Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065012.t1 | XP_024628123.1 | 93.4 | 407 | 23 | 2 | 1 | 406 | 1 | 404 | 3.90E-217 | 763.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065012.t1 | O81816 | 54.8 | 400 | 175 | 2 | 10 | 405 | 8 | 405 | 1.1e-122 | 441.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065012.t1 | A0A396K3F5 | 93.4 | 407 | 23 | 2 | 1 | 406 | 1 | 404 | 2.8e-217 | 763.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056298 | MS.gene065012 | 0.913874 | 3.71E-84 | -1.69E-46 |
| MS.gene058111 | MS.gene065012 | 0.822199 | 2.69E-53 | -1.69E-46 |
| MS.gene058171 | MS.gene065012 | 0.824781 | 6.70E-54 | -1.69E-46 |
| MS.gene058173 | MS.gene065012 | 0.822474 | 2.32E-53 | -1.69E-46 |
| MS.gene058175 | MS.gene065012 | 0.819983 | 8.72E-53 | -1.69E-46 |
| MS.gene060187 | MS.gene065012 | 0.813703 | 2.24E-51 | -1.69E-46 |
| MS.gene060602 | MS.gene065012 | 0.813437 | 2.56E-51 | -1.69E-46 |
| MS.gene06077 | MS.gene065012 | -0.81896 | 1.49E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065012.t1 | MTR_1g112780 | 94.307 | 404 | 19 | 2 | 1 | 403 | 1 | 401 | 0.0 | 762 |
| MS.gene065012.t1 | MTR_1g112780 | 77.273 | 396 | 85 | 2 | 15 | 405 | 401 | 796 | 0.0 | 586 |
| MS.gene065012.t1 | MTR_1g090667 | 76.296 | 405 | 88 | 2 | 6 | 405 | 4 | 405 | 0.0 | 625 |
| MS.gene065012.t1 | MTR_1g112740 | 78.750 | 400 | 81 | 2 | 7 | 405 | 1 | 397 | 0.0 | 617 |
| MS.gene065012.t1 | MTR_1g112750 | 73.956 | 407 | 102 | 3 | 1 | 405 | 1 | 405 | 0.0 | 557 |
| MS.gene065012.t1 | MTR_5g013260 | 42.636 | 387 | 210 | 5 | 2 | 386 | 37 | 413 | 1.70e-99 | 303 |
| MS.gene065012.t1 | MTR_5g013250 | 40.295 | 407 | 228 | 6 | 4 | 406 | 35 | 430 | 1.92e-96 | 295 |
| MS.gene065012.t1 | MTR_4g035655 | 36.520 | 408 | 238 | 9 | 8 | 406 | 481 | 876 | 2.17e-73 | 246 |
| MS.gene065012.t1 | MTR_4g035655 | 37.730 | 326 | 192 | 4 | 7 | 326 | 5 | 325 | 1.47e-65 | 224 |
| MS.gene065012.t1 | MTR_5g017350 | 28.646 | 384 | 246 | 10 | 2 | 370 | 69 | 439 | 4.52e-18 | 86.7 |
| MS.gene065012.t1 | MTR_5g017350 | 28.646 | 384 | 246 | 10 | 2 | 370 | 69 | 439 | 4.57e-18 | 86.3 |
| MS.gene065012.t1 | MTR_5g017350 | 28.646 | 384 | 246 | 10 | 2 | 370 | 69 | 439 | 9.57e-18 | 85.9 |
| MS.gene065012.t1 | MTR_5g017350 | 28.646 | 384 | 246 | 10 | 2 | 370 | 69 | 439 | 9.57e-18 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065012.t1 | AT5G05320 | 54.115 | 401 | 178 | 2 | 9 | 406 | 7 | 404 | 4.75e-157 | 449 |
| MS.gene065012.t1 | AT4G38540 | 56.000 | 400 | 170 | 2 | 10 | 405 | 8 | 405 | 1.46e-147 | 425 |
| MS.gene065012.t1 | AT2G35660 | 39.702 | 403 | 226 | 7 | 8 | 405 | 44 | 434 | 6.67e-90 | 278 |
| MS.gene065012.t1 | AT2G29720 | 37.466 | 371 | 219 | 5 | 21 | 389 | 55 | 414 | 3.08e-80 | 253 |
| MS.gene065012.t1 | AT4G15760 | 34.673 | 398 | 235 | 6 | 19 | 405 | 39 | 422 | 1.95e-71 | 230 |
| MS.gene065012.t1 | AT4G15760 | 34.406 | 404 | 240 | 7 | 19 | 405 | 39 | 434 | 3.95e-70 | 227 |
| MS.gene065012.t1 | AT2G35660 | 37.346 | 324 | 187 | 6 | 87 | 405 | 8 | 320 | 1.38e-63 | 207 |
| MS.gene065012.t1 | AT2G35660 | 37.346 | 324 | 187 | 6 | 87 | 405 | 8 | 320 | 1.38e-63 | 207 |
| MS.gene065012.t1 | AT4G15765 | 30.769 | 299 | 167 | 5 | 8 | 304 | 3 | 263 | 3.84e-39 | 141 |
| MS.gene065012.t1 | AT4G15765 | 30.120 | 166 | 116 | 0 | 139 | 304 | 25 | 190 | 4.80e-25 | 101 |
| MS.gene065012.t1 | AT4G15765 | 30.120 | 166 | 116 | 0 | 139 | 304 | 25 | 190 | 4.80e-25 | 101 |
| MS.gene065012.t1 | AT4G15765 | 30.120 | 166 | 116 | 0 | 139 | 304 | 25 | 190 | 4.80e-25 | 101 |
| MS.gene065012.t1 | AT4G15765 | 30.120 | 166 | 116 | 0 | 139 | 304 | 25 | 190 | 4.80e-25 | 101 |
Find 97 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAACATATACATCTTTA+TGG | 0.152913 | 1.2:-83525731 | MS.gene065012:CDS |
| CTGGATTTGCTTTAGGAATA+TGG | 0.163806 | 1.2:-83525805 | MS.gene065012:CDS |
| GTGACTACTTCTTTGATTAC+AGG | 0.261068 | 1.2:-83525562 | MS.gene065012:CDS |
| TCCTCCTCTTCTTCTTCCTT+TGG | 0.266684 | 1.2:+83524009 | None:intergenic |
| TCAGCAGGCTGATTCAAAAT+TGG | 0.284136 | 1.2:-83523887 | MS.gene065012:CDS |
| GTCATGAGAAAGGTGTTTAC+TGG | 0.295235 | 1.2:-83524896 | MS.gene065012:CDS |
| ATTACTACAGCTTATATTGC+AGG | 0.323766 | 1.2:-83523916 | MS.gene065012:CDS |
| AGAGTAACTGGATTTGCTTT+AGG | 0.343106 | 1.2:-83525812 | MS.gene065012:CDS |
| GTAATTGAAAAGGTATTGAT+AGG | 0.347467 | 1.2:-83525086 | MS.gene065012:intron |
| AAAGGAAATGTTTGTGTTGC+TGG | 0.349120 | 1.2:-83524138 | MS.gene065012:CDS |
| ATTGTGGGAGCTGGAATTGC+TGG | 0.349361 | 1.2:-83526029 | MS.gene065012:CDS |
| TCAGACGCATTGAGAGTAAC+TGG | 0.350706 | 1.2:-83525824 | MS.gene065012:CDS |
| CAGGTTAGGTGTAAGAAGTT+TGG | 0.359561 | 1.2:-83525858 | MS.gene065012:CDS |
| ATACAGGTAGATATGGAATC+AGG | 0.371596 | 1.2:-83525007 | MS.gene065012:CDS |
| ACATCCTTGGGAGCTCATAA+TGG | 0.372312 | 1.2:-83524172 | MS.gene065012:CDS |
| GGGTGTTGTGCTTTAGAGGA+TGG | 0.372973 | 1.2:-83524075 | MS.gene065012:CDS |
| GTTGTTGCTATAGAGGAATC+TGG | 0.376223 | 1.2:-83525285 | MS.gene065012:CDS |
| TGGATTTGCTTTAGGAATAT+GGG | 0.376418 | 1.2:-83525804 | MS.gene065012:CDS |
| GTCAAAAGTTGTTGCTATAG+AGG | 0.386849 | 1.2:-83525292 | MS.gene065012:CDS |
| GGTGTTGTGCTTTAGAGGAT+GGG | 0.387261 | 1.2:-83524074 | MS.gene065012:CDS |
| GCCACTTATACAGGTAGATA+TGG | 0.388353 | 1.2:-83525014 | MS.gene065012:CDS |
| TGCAAAGTGGTTAGGCTTCA+AGG | 0.404806 | 1.2:-83525039 | MS.gene065012:CDS |
| CACCCCATGACACCTGATCT+TGG | 0.406255 | 1.2:-83524105 | MS.gene065012:CDS |
| ACATATTGCTTCAGTTTAGC+AGG | 0.408723 | 1.2:+83524288 | None:intergenic |
| CCTATGCTTATGCAGTTCTA+TGG | 0.418184 | 1.2:-83524948 | MS.gene065012:CDS |
| ACAAACATATACATCTTTAT+GGG | 0.420565 | 1.2:-83525730 | MS.gene065012:intron |
| TTCAAGGAGGCCACTTATAC+AGG | 0.423975 | 1.2:-83525023 | MS.gene065012:CDS |
| GGTGCCATTCGGAAGTTCAT+TGG | 0.425941 | 1.2:+83525326 | None:intergenic |
| GTGTTGTGCTTTAGAGGATG+GGG | 0.426399 | 1.2:-83524073 | MS.gene065012:CDS |
| GATGTATATGTTTGTGGCGG+AGG | 0.427623 | 1.2:+83525738 | None:intergenic |
| TGTTAGAAGGAAGTTATTGT+TGG | 0.429771 | 1.2:-83525358 | MS.gene065012:CDS |
| GCTGGCCTTACTACTGCCTT+AGG | 0.433010 | 1.2:-83526011 | MS.gene065012:CDS |
| AAAATACTACATCTTGTTGA+CGG | 0.434534 | 1.2:-83525255 | MS.gene065012:CDS |
| TGTTGCAGATAAGGAGCTAA+TGG | 0.435214 | 1.2:-83524316 | MS.gene065012:intron |
| ATGATAGATCTAACATTACT+TGG | 0.440226 | 1.2:+83524243 | None:intergenic |
| AGGTGTAAGAAGTTTGGTAT+TGG | 0.442419 | 1.2:-83525852 | MS.gene065012:CDS |
| TCTGTGGTTGCAAAGTGGTT+AGG | 0.443344 | 1.2:-83525047 | MS.gene065012:CDS |
| GGTCAACTATTCAAGAAGTC+TGG | 0.446062 | 1.2:-83523823 | MS.gene065012:CDS |
| CATCCTTGGGAGCTCATAAT+GGG | 0.446436 | 1.2:-83524171 | MS.gene065012:CDS |
| TATTGCAGGTGTTATTCAGC+AGG | 0.452920 | 1.2:-83523902 | MS.gene065012:CDS |
| GTGAACTACGTAGTGTTAGA+AGG | 0.459820 | 1.2:-83525371 | MS.gene065012:CDS |
| TAGGAATATGGGAAAATGCT+TGG | 0.459941 | 1.2:-83525793 | MS.gene065012:CDS |
| CATAAAGATGTATATGTTTG+TGG | 0.466768 | 1.2:+83525732 | None:intergenic |
| TGAAGAAGATGTTGTGATTG+TGG | 0.469831 | 1.2:-83526045 | MS.gene065012:CDS |
| CATTGAGATATAGACATCCT+TGG | 0.475442 | 1.2:-83524185 | MS.gene065012:CDS |
| AACTTCCGAATGGCACCATT+AGG | 0.475545 | 1.2:-83525320 | MS.gene065012:CDS |
| AATATGCAAATGAAAGAAGA+TGG | 0.488104 | 1.2:-83523954 | MS.gene065012:CDS |
| TCCATATCTACCTGTATAAG+TGG | 0.491527 | 1.2:+83525013 | None:intergenic |
| GATGTTGTGATTGTGGGAGC+TGG | 0.492828 | 1.2:-83526038 | MS.gene065012:CDS |
| ACCAAAGGAAGAAGAAGAGG+AGG | 0.497219 | 1.2:-83524010 | MS.gene065012:CDS |
| GCCTTGGATGCTGTTGGTGT+TGG | 0.497974 | 1.2:-83525767 | MS.gene065012:CDS |
| ATTGAGATATAGACATCCTT+GGG | 0.500029 | 1.2:-83524184 | MS.gene065012:CDS |
| TGACCAAGATCAGGTGTCAT+GGG | 0.504386 | 1.2:+83524102 | None:intergenic |
| GGAGAAATACAAAAGAATTG+AGG | 0.506282 | 1.2:-83523989 | MS.gene065012:CDS |
| TTGTGCTTTAGAGGATGGGG+TGG | 0.506803 | 1.2:-83524070 | MS.gene065012:CDS |
| AAAACCAAAGGAAGAAGAAG+AGG | 0.509176 | 1.2:-83524013 | MS.gene065012:CDS |
| CTTATGCAGTTCTATGGCAA+AGG | 0.512905 | 1.2:-83524942 | MS.gene065012:CDS |
| TATATCTCAATGGAGCTGAA+TGG | 0.513754 | 1.2:+83524196 | None:intergenic |
| CAAGGATGTCTATATCTCAA+TGG | 0.515761 | 1.2:+83524186 | None:intergenic |
| TGGAAAGCCTTGGATGCTGT+TGG | 0.518048 | 1.2:-83525773 | MS.gene065012:CDS |
| GGAAAATGCTTGGAAAGCCT+TGG | 0.529652 | 1.2:-83525783 | MS.gene065012:CDS |
| GGGAATTGACCTTGGGTGGT+AGG | 0.531430 | 1.2:+83524858 | None:intergenic |
| GAAGAAGATGTTGTGATTGT+GGG | 0.532692 | 1.2:-83526044 | MS.gene065012:CDS |
| TTGACCAAGATCAGGTGTCA+TGG | 0.539777 | 1.2:+83524101 | None:intergenic |
| ATGTACCTAATGGTGCCATT+CGG | 0.542214 | 1.2:+83525315 | None:intergenic |
| CATTCGGAAGTTCATTGGCA+AGG | 0.543968 | 1.2:+83525331 | None:intergenic |
| TACAGGTAGATATGGAATCA+GGG | 0.545908 | 1.2:-83525006 | MS.gene065012:CDS |
| GTGGTACCTGTGAAGTCCTA+AGG | 0.549275 | 1.2:+83525995 | None:intergenic |
| AAATACAAAAGAATTGAGGA+AGG | 0.551011 | 1.2:-83523985 | MS.gene065012:CDS |
| GTTGTTCCTTGTCATGAGAA+AGG | 0.552354 | 1.2:-83524906 | MS.gene065012:CDS |
| ATTCGGAAGTTCATTGGCAA+GGG | 0.557741 | 1.2:+83525332 | None:intergenic |
| TCCAACACCAACAGCATCCA+AGG | 0.559236 | 1.2:+83525766 | None:intergenic |
| AATAGTTGACCAGCTAGTAA+TGG | 0.561620 | 1.2:+83523835 | None:intergenic |
| TTTCCCATTATGAGCTCCCA+AGG | 0.564495 | 1.2:+83524168 | None:intergenic |
| GAAGTCCTAAGGCAGTAGTA+AGG | 0.567536 | 1.2:+83526006 | None:intergenic |
| ATGACACCTGATCTTGGTCA+AGG | 0.568341 | 1.2:-83524099 | MS.gene065012:CDS |
| CATATTGCTTCAGTTTAGCA+GGG | 0.572399 | 1.2:+83524289 | None:intergenic |
| TGACACCTGATCTTGGTCAA+GGG | 0.574223 | 1.2:-83524098 | MS.gene065012:CDS |
| CTACTGCCTTAGGACTTCAC+AGG | 0.574990 | 1.2:-83526001 | MS.gene065012:intron |
| AAAAGGGAATTGACCTTGGG+TGG | 0.578106 | 1.2:+83524854 | None:intergenic |
| CCATAGAACTGCATAAGCAT+AGG | 0.583126 | 1.2:+83524948 | None:intergenic |
| AAGGTATTGATAGGATGTGA+TGG | 0.586088 | 1.2:-83525077 | MS.gene065012:CDS |
| GACACCTGATCTTGGTCAAG+GGG | 0.603675 | 1.2:-83524097 | MS.gene065012:CDS |
| ATAATGGGAAATATTAGCAA+AGG | 0.604077 | 1.2:-83524156 | MS.gene065012:CDS |
| ACTTGGACTCCTACCACCCA+AGG | 0.609702 | 1.2:-83524867 | MS.gene065012:intron |
| ACAGGTAGATATGGAATCAG+GGG | 0.617290 | 1.2:-83525005 | MS.gene065012:CDS |
| AATACAAAAGAATTGAGGAA+GGG | 0.636762 | 1.2:-83523984 | MS.gene065012:CDS |
| CTTGCCAATGAACTTCCGAA+TGG | 0.638428 | 1.2:-83525330 | MS.gene065012:CDS |
| GACCAAGATCAGGTGTCATG+GGG | 0.638652 | 1.2:+83524103 | None:intergenic |
| TAAACACCTTTCTCATGACA+AGG | 0.641474 | 1.2:+83524900 | None:intergenic |
| CACCTGATCTTGGTCAAGGG+GGG | 0.646163 | 1.2:-83524095 | MS.gene065012:CDS |
| TCAACTCTGTGGTTGCAAAG+TGG | 0.661332 | 1.2:-83525052 | MS.gene065012:CDS |
| ACACCTGATCTTGGTCAAGG+GGG | 0.667732 | 1.2:-83524096 | MS.gene065012:CDS |
| AAAGATGTATATGTTTGTGG+CGG | 0.679762 | 1.2:+83525735 | None:intergenic |
| CGGAACAACCATCAAAACCA+AGG | 0.684535 | 1.2:-83525235 | MS.gene065012:intron |
| ATGTGATGGAATCAACTCTG+TGG | 0.777353 | 1.2:-83525063 | MS.gene065012:CDS |
| AAAGTGGTTAGGCTTCAAGG+AGG | 0.779828 | 1.2:-83525036 | MS.gene065012:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATAATTTGTAATTGAAA+AGG | - | chr1.2:83524767-83524786 | MS.gene065012:intron | 10.0% |
| !! | TAATATTAAAAACACTAAGT+TGG | + | chr1.2:83524173-83524192 | None:intergenic | 15.0% |
| !!! | AAAATTGGTTACATTTTTTA+GGG | - | chr1.2:83525991-83526010 | MS.gene065012:intron | 15.0% |
| !!! | CTTTATAAGTCAATTTTATA+GGG | - | chr1.2:83525184-83525203 | MS.gene065012:intron | 15.0% |
| !! | ACAAACATATACATCTTTAT+GGG | - | chr1.2:83524133-83524152 | MS.gene065012:CDS | 20.0% |
| !! | GTAATTCTTGATATATATGT+TGG | + | chr1.2:83524424-83524443 | None:intergenic | 20.0% |
| !! | TTCAACATGCTTAAAAAAAA+GGG | + | chr1.2:83525028-83525047 | None:intergenic | 20.0% |
| !! | TTTCAACATGCTTAAAAAAA+AGG | + | chr1.2:83525029-83525048 | None:intergenic | 20.0% |
| !!! | AAAATTGACTTATAAAGCAA+GGG | + | chr1.2:83525181-83525200 | None:intergenic | 20.0% |
| !!! | ATCTATAAAATTGACTTGTA+AGG | + | chr1.2:83525407-83525426 | None:intergenic | 20.0% |
| !!! | ATTTTTTAGGGACAAAATTT+TGG | - | chr1.2:83526003-83526022 | MS.gene065012:CDS | 20.0% |
| !!! | CAAAATTGGTTACATTTTTT+AGG | - | chr1.2:83525990-83526009 | MS.gene065012:intron | 20.0% |
| !!! | CTTATTTCTTAACACTTTTT+AGG | + | chr1.2:83525361-83525380 | None:intergenic | 20.0% |
| !!! | GCTTTATAAGTCAATTTTAT+AGG | - | chr1.2:83525183-83525202 | MS.gene065012:intron | 20.0% |
| !!! | TAAAATTGACTTATAAAGCA+AGG | + | chr1.2:83525182-83525201 | None:intergenic | 20.0% |
| ! | AAAATACTACATCTTGTTGA+CGG | - | chr1.2:83524608-83524627 | MS.gene065012:intron | 25.0% |
| ! | AAATACAAAAGAATTGAGGA+AGG | - | chr1.2:83525878-83525897 | MS.gene065012:intron | 25.0% |
| ! | AATACAAAAGAATTGAGGAA+GGG | - | chr1.2:83525879-83525898 | MS.gene065012:intron | 25.0% |
| ! | AATATGCAAATGAAAGAAGA+TGG | - | chr1.2:83525909-83525928 | MS.gene065012:intron | 25.0% |
| ! | ATGATAGATCTAACATTACT+TGG | + | chr1.2:83525623-83525642 | None:intergenic | 25.0% |
| ! | CAAAGAAACTTCTTAAAATG+TGG | + | chr1.2:83525446-83525465 | None:intergenic | 25.0% |
| ! | CACAAACATATACATCTTTA+TGG | - | chr1.2:83524132-83524151 | MS.gene065012:CDS | 25.0% |
| ! | CATAAAGATGTATATGTTTG+TGG | + | chr1.2:83524134-83524153 | None:intergenic | 25.0% |
| ! | CTTAATACAAGCAACAAATA+AGG | + | chr1.2:83525080-83525099 | None:intergenic | 25.0% |
| ! | TACATATTCCTTATTATCGA+TGG | - | chr1.2:83523982-83524001 | MS.gene065012:CDS | 25.0% |
| ! | TGAAGAGAATAGAATTGAAA+AGG | + | chr1.2:83523897-83523916 | None:intergenic | 25.0% |
| ! | TTGATGAATTAACATGACAA+TGG | + | chr1.2:83525518-83525537 | None:intergenic | 25.0% |
| !! | AATTAGCAACTATGTCTTTT+AGG | - | chr1.2:83524329-83524348 | MS.gene065012:intron | 25.0% |
| !! | ATAATGGGAAATATTAGCAA+AGG | - | chr1.2:83525707-83525726 | MS.gene065012:intron | 25.0% |
| !! | ATTAGCAACTATGTCTTTTA+GGG | - | chr1.2:83524330-83524349 | MS.gene065012:intron | 25.0% |
| !! | TGAAACTAAAGTACTTGAAT+CGG | - | chr1.2:83524268-83524287 | MS.gene065012:CDS | 25.0% |
| !!! | GTAATTGAAAAGGTATTGAT+AGG | - | chr1.2:83524777-83524796 | MS.gene065012:intron | 25.0% |
| AAAAAAAAGGGAATTGACCT+TGG | + | chr1.2:83525016-83525035 | None:intergenic | 30.0% | |
| AAAAAAAGGGAATTGACCTT+GGG | + | chr1.2:83525015-83525034 | None:intergenic | 30.0% | |
| AAAGATGTATATGTTTGTGG+CGG | + | chr1.2:83524131-83524150 | None:intergenic | 30.0% | |
| AATAGAATTGAAAAGGTAGG+TGG | + | chr1.2:83523890-83523909 | None:intergenic | 30.0% | |
| ACTATCTTCGAATTTGGATT+TGG | + | chr1.2:83525220-83525239 | None:intergenic | 30.0% | |
| ATTACTACAGCTTATATTGC+AGG | - | chr1.2:83525947-83525966 | MS.gene065012:intron | 30.0% | |
| ATTGAGATATAGACATCCTT+GGG | - | chr1.2:83525679-83525698 | MS.gene065012:intron | 30.0% | |
| GAGAATAGAATTGAAAAGGT+AGG | + | chr1.2:83523893-83523912 | None:intergenic | 30.0% | |
| GGAGAAATACAAAAGAATTG+AGG | - | chr1.2:83525874-83525893 | MS.gene065012:intron | 30.0% | |
| GTACCAAATCGAACAAAATA+TGG | - | chr1.2:83525113-83525132 | MS.gene065012:intron | 30.0% | |
| TCTGATACTATCTTCGAATT+TGG | + | chr1.2:83525226-83525245 | None:intergenic | 30.0% | |
| TGTTAGAAGGAAGTTATTGT+TGG | - | chr1.2:83524505-83524524 | MS.gene065012:intron | 30.0% | |
| TTCAATAACATGTGCTTCAA+CGG | + | chr1.2:83525262-83525281 | None:intergenic | 30.0% | |
| ! | AACTTTTGACATGTACCTAA+TGG | + | chr1.2:83524561-83524580 | None:intergenic | 30.0% |
| ! | AAGTGTCTCTAGAAAAAAGA+AGG | + | chr1.2:83525158-83525177 | None:intergenic | 30.0% |
| ! | GAAACTAAAGTACTTGAATC+GGG | - | chr1.2:83524269-83524288 | MS.gene065012:CDS | 30.0% |
| ! | TGACCATATTTTGTTCGATT+TGG | + | chr1.2:83525119-83525138 | None:intergenic | 30.0% |
| !! | TGGATTTGCTTTAGGAATAT+GGG | - | chr1.2:83524059-83524078 | MS.gene065012:CDS | 30.0% |
| !!! | ATTGTTTACCTTGGTTTTGA+TGG | + | chr1.2:83524639-83524658 | None:intergenic | 30.0% |
| !!! | TTCTTCTTCCTTTGGTTTTT+TGG | + | chr1.2:83525849-83525868 | None:intergenic | 30.0% |
| AAAACCAAAGGAAGAAGAAG+AGG | - | chr1.2:83525850-83525869 | MS.gene065012:CDS | 35.0% | |
| AAAGGAAATGTTTGTGTTGC+TGG | - | chr1.2:83525725-83525744 | MS.gene065012:intron | 35.0% | |
| AATAGTTGACCAGCTAGTAA+TGG | + | chr1.2:83526031-83526050 | None:intergenic | 35.0% | |
| ACATATTGCTTCAGTTTAGC+AGG | + | chr1.2:83525578-83525597 | None:intergenic | 35.0% | |
| AGGTGTAAGAAGTTTGGTAT+TGG | - | chr1.2:83524011-83524030 | MS.gene065012:CDS | 35.0% | |
| ATACAGGTAGATATGGAATC+AGG | - | chr1.2:83524856-83524875 | MS.gene065012:intron | 35.0% | |
| CAAGGATGTCTATATCTCAA+TGG | + | chr1.2:83525680-83525699 | None:intergenic | 35.0% | |
| CATATTGCTTCAGTTTAGCA+GGG | + | chr1.2:83525577-83525596 | None:intergenic | 35.0% | |
| CATTGAGATATAGACATCCT+TGG | - | chr1.2:83525678-83525697 | MS.gene065012:intron | 35.0% | |
| GAAGAAGATGTTGTGATTGT+GGG | - | chr1.2:83523819-83523838 | MS.gene065012:CDS | 35.0% | |
| GTCAAAAGTTGTTGCTATAG+AGG | - | chr1.2:83524571-83524590 | MS.gene065012:intron | 35.0% | |
| GTCACACATATTGTTTACCT+TGG | + | chr1.2:83524648-83524667 | None:intergenic | 35.0% | |
| GTGACTACTTCTTTGATTAC+AGG | - | chr1.2:83524301-83524320 | MS.gene065012:CDS | 35.0% | |
| TAAAATGTTCAGTCCTAAGG+AGG | - | chr1.2:83525299-83525318 | MS.gene065012:CDS | 35.0% | |
| TAAACACCTTTCTCATGACA+AGG | + | chr1.2:83524966-83524985 | None:intergenic | 35.0% | |
| TACAGGTAGATATGGAATCA+GGG | - | chr1.2:83524857-83524876 | MS.gene065012:intron | 35.0% | |
| TAGGAATATGGGAAAATGCT+TGG | - | chr1.2:83524070-83524089 | MS.gene065012:CDS | 35.0% | |
| TATATCTCAATGGAGCTGAA+TGG | + | chr1.2:83525670-83525689 | None:intergenic | 35.0% | |
| TATTCCTTATTATCGATGGC+AGG | - | chr1.2:83523986-83524005 | MS.gene065012:CDS | 35.0% | |
| TCCATATCTACCTGTATAAG+TGG | + | chr1.2:83524853-83524872 | None:intergenic | 35.0% | |
| TGAAGAAGATGTTGTGATTG+TGG | - | chr1.2:83523818-83523837 | MS.gene065012:CDS | 35.0% | |
| TTCATTGTTTCGATCCAGAA+TGG | - | chr1.2:83525054-83525073 | MS.gene065012:CDS | 35.0% | |
| ! | AGAGTAACTGGATTTGCTTT+AGG | - | chr1.2:83524051-83524070 | MS.gene065012:CDS | 35.0% |
| ! | GATTCTTGTTATGATGAGTG+TGG | - | chr1.2:83524452-83524471 | MS.gene065012:intron | 35.0% |
| !! | AAGGTATTGATAGGATGTGA+TGG | - | chr1.2:83524786-83524805 | MS.gene065012:intron | 35.0% |
| !! | CTCTAAAATGTTCAGTCCTA+AGG | - | chr1.2:83525296-83525315 | MS.gene065012:CDS | 35.0% |
| !! | CTGGATTTGCTTTAGGAATA+TGG | - | chr1.2:83524058-83524077 | MS.gene065012:CDS | 35.0% |
| !!! | AAGAAGTCTGGTTTTGATTG+TGG | - | chr1.2:83526052-83526071 | MS.gene065012:CDS | 35.0% |
| !!! | GTGTTTACTGGTTTTTCACT+TGG | - | chr1.2:83524979-83524998 | MS.gene065012:CDS | 35.0% |
| !!! | TTCCTTTGGTTTTTTGGACA+AGG | + | chr1.2:83525843-83525862 | None:intergenic | 35.0% |
| ACAGGTAGATATGGAATCAG+GGG | - | chr1.2:83524858-83524877 | MS.gene065012:intron | 40.0% | |
| AGCAACAAATAAGGCCATTC+TGG | + | chr1.2:83525071-83525090 | None:intergenic | 40.0% | |
| ATTCGGAAGTTCATTGGCAA+GGG | + | chr1.2:83524534-83524553 | None:intergenic | 40.0% | |
| CAGGTTAGGTGTAAGAAGTT+TGG | - | chr1.2:83524005-83524024 | MS.gene065012:CDS | 40.0% | |
| CCATAGAACTGCATAAGCAT+AGG | + | chr1.2:83524918-83524937 | None:intergenic | 40.0% | |
| CCTATGCTTATGCAGTTCTA+TGG | - | chr1.2:83524915-83524934 | MS.gene065012:CDS | 40.0% | |
| CTAACCTGCCATCGATAATA+AGG | + | chr1.2:83523993-83524012 | None:intergenic | 40.0% | |
| CTTATGCAGTTCTATGGCAA+AGG | - | chr1.2:83524921-83524940 | MS.gene065012:CDS | 40.0% | |
| CTTATTATCGATGGCAGGTT+AGG | - | chr1.2:83523991-83524010 | MS.gene065012:CDS | 40.0% | |
| GCCACTTATACAGGTAGATA+TGG | - | chr1.2:83524849-83524868 | MS.gene065012:intron | 40.0% | |
| GGTCAACTATTCAAGAAGTC+TGG | - | chr1.2:83526040-83526059 | MS.gene065012:CDS | 40.0% | |
| GTGAACTACGTAGTGTTAGA+AGG | - | chr1.2:83524492-83524511 | MS.gene065012:intron | 40.0% | |
| GTTGTTCCTTGTCATGAGAA+AGG | - | chr1.2:83524957-83524976 | MS.gene065012:CDS | 40.0% | |
| GTTGTTGCTATAGAGGAATC+TGG | - | chr1.2:83524578-83524597 | MS.gene065012:intron | 40.0% | |
| TGTTGCAGATAAGGAGCTAA+TGG | - | chr1.2:83525547-83525566 | MS.gene065012:CDS | 40.0% | |
| ! | AGCCTTGTCCAAAAAACCAA+AGG | - | chr1.2:83525838-83525857 | MS.gene065012:CDS | 40.0% |
| ! | ATGTGATGGAATCAACTCTG+TGG | - | chr1.2:83524800-83524819 | MS.gene065012:intron | 40.0% |
| ! | TCAGCAGGCTGATTCAAAAT+TGG | - | chr1.2:83525976-83525995 | MS.gene065012:intron | 40.0% |
| !! | ACTATGTCTTTTAGGGACAG+AGG | - | chr1.2:83524337-83524356 | MS.gene065012:intron | 40.0% |
| !! | ATGTACCTAATGGTGCCATT+CGG | + | chr1.2:83524551-83524570 | None:intergenic | 40.0% |
| !! | CTTGACTTGTGTTGCAGATA+AGG | - | chr1.2:83525538-83525557 | MS.gene065012:CDS | 40.0% |
| !! | GTCATGAGAAAGGTGTTTAC+TGG | - | chr1.2:83524967-83524986 | MS.gene065012:CDS | 40.0% |
| !! | TATTGCAGGTGTTATTCAGC+AGG | - | chr1.2:83525961-83525980 | MS.gene065012:intron | 40.0% |
| !!! | ATTTTGGCTCCATTACTAGC+TGG | - | chr1.2:83526019-83526038 | MS.gene065012:CDS | 40.0% |
| !!! | TATGGCAAAGGTTTTAGAGC+TGG | - | chr1.2:83524933-83524952 | MS.gene065012:CDS | 40.0% |
| AAAAGGGAATTGACCTTGGG+TGG | + | chr1.2:83525012-83525031 | None:intergenic | 45.0% | |
| AAAGTGGTTAGGCTTCAAGG+AGG | - | chr1.2:83524827-83524846 | MS.gene065012:intron | 45.0% | |
| AACTTCCGAATGGCACCATT+AGG | - | chr1.2:83524543-83524562 | MS.gene065012:intron | 45.0% | |
| AATGTTCAGTCCTAAGGAGG+TGG | - | chr1.2:83525302-83525321 | MS.gene065012:CDS | 45.0% | |
| ACATCCTTGGGAGCTCATAA+TGG | - | chr1.2:83525691-83525710 | MS.gene065012:intron | 45.0% | |
| ACATGTGCTTCAACGGATCT+TGG | + | chr1.2:83525255-83525274 | None:intergenic | 45.0% | |
| ACCAAAGGAAGAAGAAGAGG+AGG | - | chr1.2:83525853-83525872 | MS.gene065012:CDS | 45.0% | |
| ATGACACCTGATCTTGGTCA+AGG | - | chr1.2:83525764-83525783 | MS.gene065012:CDS | 45.0% | |
| CATCCTTGGGAGCTCATAAT+GGG | - | chr1.2:83525692-83525711 | MS.gene065012:intron | 45.0% | |
| CATTCGGAAGTTCATTGGCA+AGG | + | chr1.2:83524535-83524554 | None:intergenic | 45.0% | |
| CGGAACAACCATCAAAACCA+AGG | - | chr1.2:83524628-83524647 | MS.gene065012:intron | 45.0% | |
| CTTGCCAATGAACTTCCGAA+TGG | - | chr1.2:83524533-83524552 | MS.gene065012:intron | 45.0% | |
| GAAGTCCTAAGGCAGTAGTA+AGG | + | chr1.2:83523860-83523879 | None:intergenic | 45.0% | |
| GATGTATATGTTTGTGGCGG+AGG | + | chr1.2:83524128-83524147 | None:intergenic | 45.0% | |
| GGAAAATGCTTGGAAAGCCT+TGG | - | chr1.2:83524080-83524099 | MS.gene065012:CDS | 45.0% | |
| TCAACTCTGTGGTTGCAAAG+TGG | - | chr1.2:83524811-83524830 | MS.gene065012:intron | 45.0% | |
| TCAGACGCATTGAGAGTAAC+TGG | - | chr1.2:83524039-83524058 | MS.gene065012:CDS | 45.0% | |
| TCCTCCTCTTCTTCTTCCTT+TGG | + | chr1.2:83525857-83525876 | None:intergenic | 45.0% | |
| TCTGTGGTTGCAAAGTGGTT+AGG | - | chr1.2:83524816-83524835 | MS.gene065012:intron | 45.0% | |
| TGACACCTGATCTTGGTCAA+GGG | - | chr1.2:83525765-83525784 | MS.gene065012:CDS | 45.0% | |
| TGCAAAGTGGTTAGGCTTCA+AGG | - | chr1.2:83524824-83524843 | MS.gene065012:intron | 45.0% | |
| TTCAAGGAGGCCACTTATAC+AGG | - | chr1.2:83524840-83524859 | MS.gene065012:intron | 45.0% | |
| TTGACCAAGATCAGGTGTCA+TGG | + | chr1.2:83525765-83525784 | None:intergenic | 45.0% | |
| TTTCCCATTATGAGCTCCCA+AGG | + | chr1.2:83525698-83525717 | None:intergenic | 45.0% | |
| ! | AAAGTACTTGAATCGGGTGC+AGG | - | chr1.2:83524275-83524294 | MS.gene065012:CDS | 45.0% |
| ! | AATCAGGGGTTTTGCAGAGT+TGG | - | chr1.2:83524872-83524891 | MS.gene065012:CDS | 45.0% |
| ! | TGACCAAGATCAGGTGTCAT+GGG | + | chr1.2:83525764-83525783 | None:intergenic | 45.0% |
| !! | GGTGTTGTGCTTTAGAGGAT+GGG | - | chr1.2:83525789-83525808 | MS.gene065012:CDS | 45.0% |
| !! | GTGTTGTGCTTTAGAGGATG+GGG | - | chr1.2:83525790-83525809 | MS.gene065012:CDS | 45.0% |
| ACACCTGATCTTGGTCAAGG+GGG | - | chr1.2:83525767-83525786 | MS.gene065012:CDS | 50.0% | |
| ATTGTGGGAGCTGGAATTGC+TGG | - | chr1.2:83523834-83523853 | MS.gene065012:CDS | 50.0% | |
| CTACTGCCTTAGGACTTCAC+AGG | - | chr1.2:83523862-83523881 | MS.gene065012:CDS | 50.0% | |
| GACACCTGATCTTGGTCAAG+GGG | - | chr1.2:83525766-83525785 | MS.gene065012:CDS | 50.0% | |
| GATGTTGTGATTGTGGGAGC+TGG | - | chr1.2:83523825-83523844 | MS.gene065012:CDS | 50.0% | |
| GTGGTACCTGTGAAGTCCTA+AGG | + | chr1.2:83523871-83523890 | None:intergenic | 50.0% | |
| TCCAACACCAACAGCATCCA+AGG | + | chr1.2:83524100-83524119 | None:intergenic | 50.0% | |
| TCTTAGCACACCACCTCCTT+AGG | + | chr1.2:83525315-83525334 | None:intergenic | 50.0% | |
| TGGAAAGCCTTGGATGCTGT+TGG | - | chr1.2:83524090-83524109 | MS.gene065012:CDS | 50.0% | |
| ! | GACCAAGATCAGGTGTCATG+GGG | + | chr1.2:83525763-83525782 | None:intergenic | 50.0% |
| !! | GGGTGTTGTGCTTTAGAGGA+TGG | - | chr1.2:83525788-83525807 | MS.gene065012:CDS | 50.0% |
| !! | GGTGCCATTCGGAAGTTCAT+TGG | + | chr1.2:83524540-83524559 | None:intergenic | 50.0% |
| !! | TTGTGCTTTAGAGGATGGGG+TGG | - | chr1.2:83525793-83525812 | MS.gene065012:CDS | 50.0% |
| !!! | AGGATGGGGTGGTTTTAGCA+AGG | - | chr1.2:83525804-83525823 | MS.gene065012:CDS | 50.0% |
| ACTTGGACTCCTACCACCCA+AGG | - | chr1.2:83524996-83525015 | MS.gene065012:CDS | 55.0% | |
| CACCCCATGACACCTGATCT+TGG | - | chr1.2:83525758-83525777 | MS.gene065012:CDS | 55.0% | |
| CACCTGATCTTGGTCAAGGG+GGG | - | chr1.2:83525768-83525787 | MS.gene065012:CDS | 55.0% | |
| GCCTTGGATGCTGTTGGTGT+TGG | - | chr1.2:83524096-83524115 | MS.gene065012:CDS | 55.0% | |
| GGGAATTGACCTTGGGTGGT+AGG | + | chr1.2:83525008-83525027 | None:intergenic | 55.0% | |
| !! | AGGGGGGTGTTGTGCTTTAG+AGG | - | chr1.2:83525784-83525803 | MS.gene065012:CDS | 55.0% |
| !! | GCTGGCCTTACTACTGCCTT+AGG | - | chr1.2:83523852-83523871 | MS.gene065012:CDS | 55.0% |
| CACCCCCCTTGACCAAGATC+AGG | + | chr1.2:83525773-83525792 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 83523798 | 83526087 | 83523798 | ID=MS.gene065012 |
| chr1.2 | mRNA | 83523798 | 83526087 | 83523798 | ID=MS.gene065012.t1;Parent=MS.gene065012 |
| chr1.2 | exon | 83526002 | 83526087 | 83526002 | ID=MS.gene065012.t1.exon1;Parent=MS.gene065012.t1 |
| chr1.2 | CDS | 83526002 | 83526087 | 83526002 | ID=cds.MS.gene065012.t1;Parent=MS.gene065012.t1 |
| chr1.2 | exon | 83525731 | 83525877 | 83525731 | ID=MS.gene065012.t1.exon2;Parent=MS.gene065012.t1 |
| chr1.2 | CDS | 83525731 | 83525877 | 83525731 | ID=cds.MS.gene065012.t1;Parent=MS.gene065012.t1 |
| chr1.2 | exon | 83525520 | 83525588 | 83525520 | ID=MS.gene065012.t1.exon3;Parent=MS.gene065012.t1 |
| chr1.2 | CDS | 83525520 | 83525588 | 83525520 | ID=cds.MS.gene065012.t1;Parent=MS.gene065012.t1 |
| chr1.2 | exon | 83525236 | 83525392 | 83525236 | ID=MS.gene065012.t1.exon4;Parent=MS.gene065012.t1 |
| chr1.2 | CDS | 83525236 | 83525392 | 83525236 | ID=cds.MS.gene065012.t1;Parent=MS.gene065012.t1 |
| chr1.2 | exon | 83524868 | 83525096 | 83524868 | ID=MS.gene065012.t1.exon5;Parent=MS.gene065012.t1 |
| chr1.2 | CDS | 83524868 | 83525096 | 83524868 | ID=cds.MS.gene065012.t1;Parent=MS.gene065012.t1 |
| chr1.2 | exon | 83523798 | 83524330 | 83523798 | ID=MS.gene065012.t1.exon6;Parent=MS.gene065012.t1 |
| chr1.2 | CDS | 83523798 | 83524330 | 83523798 | ID=cds.MS.gene065012.t1;Parent=MS.gene065012.t1 |
| Gene Sequence |
| Protein sequence |
