AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060187


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060187.t1 MTR_2g076590 90.104 384 36 1 1 382 55 438 0.0 709
MS.gene060187.t1 MTR_2g076490 87.435 382 30 1 1 382 55 418 0.0 689
MS.gene060187.t1 MTR_2g076610 79.461 297 40 2 35 331 19 294 2.81e-169 474
MS.gene060187.t1 MTR_2g076650 73.043 230 44 3 1 228 22 235 3.38e-110 323
MS.gene060187.t1 MTR_1g012550 26.440 382 238 13 9 379 65 414 2.37e-23 102
MS.gene060187.t1 MTR_2g089440 28.763 372 213 15 39 379 80 430 2.45e-23 102
MS.gene060187.t1 MTR_0280s0040 26.716 408 235 19 9 379 49 429 1.37e-20 94.4
MS.gene060187.t1 MTR_7g058830 26.835 395 247 18 6 380 47 419 3.13e-20 93.2
MS.gene060187.t1 MTR_7g072460 25.749 334 207 12 58 380 101 404 4.30e-20 92.0
MS.gene060187.t1 MTR_7g092050 29.856 278 156 12 6 273 48 296 4.82e-20 92.4
MS.gene060187.t1 MTR_7g058530 27.540 374 236 12 6 363 48 402 6.32e-20 92.0
MS.gene060187.t1 MTR_2g089360 27.049 366 216 16 39 375 77 420 1.02e-19 91.7
MS.gene060187.t1 MTR_3g031640 27.513 378 229 16 9 363 42 397 1.83e-19 90.9
MS.gene060187.t1 MTR_3g102400 27.424 361 217 17 6 344 45 382 2.34e-19 90.5
MS.gene060187.t1 MTR_3g107070 23.958 384 240 13 9 377 41 387 5.63e-19 89.4
MS.gene060187.t1 MTR_3g031580 26.667 390 241 17 9 380 45 407 7.41e-19 89.0
MS.gene060187.t1 MTR_2g011150 26.975 367 210 18 9 347 50 386 9.41e-19 88.6
MS.gene060187.t1 MTR_3g031610 25.641 390 257 13 9 382 42 414 1.78e-18 87.8
MS.gene060187.t1 MTR_1g099400 24.819 415 259 15 6 379 33 435 1.79e-18 87.8
MS.gene060187.t1 MTR_3g031480 26.243 362 223 15 9 349 45 383 1.85e-18 87.8
MS.gene060187.t1 MTR_4g094858 27.701 361 217 15 6 347 46 381 2.49e-17 84.3
MS.gene060187.t1 MTR_3g031470 27.989 368 216 17 9 349 44 389 3.44e-17 84.0
MS.gene060187.t1 MTR_8g030500 25.000 404 249 17 6 380 31 409 6.29e-17 83.2
MS.gene060187.t1 MTR_7g053050 24.747 396 248 15 9 380 49 418 1.14e-16 82.4
MS.gene060187.t1 MTR_3g031600 28.169 355 224 13 9 349 42 379 2.15e-16 81.3
MS.gene060187.t1 MTR_3g031490 26.010 396 245 15 9 380 42 413 3.75e-16 80.5
MS.gene060187.t1 MTR_3g031500 27.042 355 215 15 42 380 2 328 3.87e-16 80.5
MS.gene060187.t1 MTR_0090s0020 25.000 360 228 13 9 347 44 382 5.17e-16 80.1
MS.gene060187.t1 MTR_0090s0020 25.000 360 228 13 9 347 44 382 7.36e-16 79.7
MS.gene060187.t1 MTR_0090s0020 25.000 360 228 13 9 347 44 382 7.61e-16 79.7
MS.gene060187.t1 MTR_0090s0020 25.000 360 228 13 9 347 44 382 8.33e-16 79.7
MS.gene060187.t1 MTR_2g080080 23.421 380 243 16 9 377 63 405 1.02e-15 79.3
MS.gene060187.t1 MTR_5g067290 35.862 145 83 5 6 143 49 190 8.36e-15 75.9
MS.gene060187.t1 MTR_2g011180 27.224 371 216 19 6 347 46 391 8.50e-15 76.6
MS.gene060187.t1 MTR_7g056450 25.135 370 225 19 9 352 58 401 9.05e-15 76.3
MS.gene060187.t1 MTR_8g013600 24.185 368 232 14 39 380 77 423 9.12e-15 76.3
MS.gene060187.t1 MTR_2g011180 27.346 373 213 19 6 347 46 391 1.03e-14 76.3
MS.gene060187.t1 MTR_7g056450 25.135 370 225 19 9 352 48 391 1.36e-14 75.9
MS.gene060187.t1 MTR_5g067250 35.862 145 83 5 6 143 48 189 2.16e-14 75.1
MS.gene060187.t1 MTR_7g103870 25.570 395 237 15 9 379 63 424 3.50e-14 74.3
MS.gene060187.t1 MTR_2g080100 22.704 392 248 13 6 379 61 415 4.21e-14 74.3
MS.gene060187.t1 MTR_2g011160 26.486 370 208 19 9 347 48 384 4.28e-14 74.3
MS.gene060187.t1 MTR_2g011160 26.486 370 208 19 9 347 48 384 7.44e-14 73.6
MS.gene060187.t1 MTR_2g103810 37.168 113 66 2 6 118 56 163 8.01e-14 73.6
MS.gene060187.t1 MTR_8g465510 24.933 373 230 12 3 347 38 388 9.06e-14 73.2
MS.gene060187.t1 MTR_8g013610 24.390 369 231 13 39 380 78 425 1.84e-13 72.4
MS.gene060187.t1 MTR_5g006160 23.214 392 255 16 9 380 45 410 3.81e-13 71.2
MS.gene060187.t1 MTR_3g007630 24.880 418 242 18 6 379 45 434 7.35e-13 70.5
MS.gene060187.t1 MTR_2g080090 22.365 389 247 13 9 379 63 414 7.79e-13 70.5
MS.gene060187.t1 MTR_4g081665 34.940 166 86 9 9 156 46 207 1.04e-12 70.1
MS.gene060187.t1 MTR_8g013560 23.138 376 226 14 39 380 77 423 1.30e-12 69.7
MS.gene060187.t1 MTR_7g056680 24.625 333 209 14 39 347 75 389 1.71e-12 69.3
MS.gene060187.t1 MTR_7g056680 24.625 333 209 14 39 347 75 389 1.77e-12 69.3
MS.gene060187.t1 MTR_7g056680 24.625 333 209 14 39 347 75 389 1.87e-12 69.3
MS.gene060187.t1 MTR_7g056680 24.625 333 209 14 39 347 75 389 2.08e-12 69.3
MS.gene060187.t1 MTR_4g081675 27.647 340 193 16 37 347 73 388 3.03e-12 68.6
MS.gene060187.t1 MTR_2g067990 24.403 377 239 14 9 357 260 618 3.11e-12 68.6
MS.gene060187.t1 MTR_7g056510 26.667 330 201 15 39 347 75 384 3.40e-12 68.2
MS.gene060187.t1 MTR_7g056510 26.667 330 201 15 39 347 65 374 4.03e-12 68.2
MS.gene060187.t1 MTR_7g056510 26.667 330 201 15 39 347 75 384 4.57e-12 67.8
MS.gene060187.t1 MTR_7g056510 26.667 330 201 15 39 347 75 384 4.72e-12 67.8
MS.gene060187.t1 MTR_8g011410 23.460 341 224 14 39 357 80 405 4.95e-12 68.2
MS.gene060187.t1 MTR_7g056510 26.667 330 201 15 39 347 75 384 5.75e-12 67.8
MS.gene060187.t1 MTR_3g019500 23.824 340 201 15 39 347 79 391 8.04e-12 67.0
MS.gene060187.t1 MTR_3g019500 23.824 340 201 15 39 347 79 391 8.81e-12 67.0
MS.gene060187.t1 MTR_8g013580 25.668 374 220 19 39 380 84 431 8.93e-12 67.0
MS.gene060187.t1 MTR_2g089290 46.341 82 36 4 39 115 84 162 9.39e-12 67.0
MS.gene060187.t1 MTR_1g052880 24.396 414 209 20 9 361 45 415 1.03e-11 67.0
MS.gene060187.t1 MTR_4g081685 27.647 340 191 16 39 347 74 389 1.05e-11 67.0
MS.gene060187.t1 MTR_3g007650 24.337 415 248 17 6 379 46 435 1.07e-11 67.0
MS.gene060187.t1 MTR_3g019500 23.824 340 201 15 39 347 79 391 1.24e-11 66.6
MS.gene060187.t1 MTR_5g013070 24.365 394 224 17 9 357 47 411 1.27e-11 66.6
MS.gene060187.t1 MTR_4g081730 27.515 338 196 15 38 347 72 388 1.76e-11 66.2
MS.gene060187.t1 MTR_8g011430 24.207 347 217 11 39 357 85 413 1.85e-11 65.9
MS.gene060187.t1 MTR_3g072800 23.360 381 220 17 39 379 81 429 2.51e-11 65.9
MS.gene060187.t1 MTR_8g465980 25.068 367 220 19 6 347 43 379 3.48e-11 65.5
MS.gene060187.t1 MTR_4g114240 23.181 371 238 13 9 349 59 412 9.21e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060187.t1 AT1G78850 50.262 382 182 4 5 381 56 434 4.11e-136 396
MS.gene060187.t1 AT1G78860 50.524 382 181 4 5 381 56 434 1.16e-135 395
MS.gene060187.t1 AT1G78830 43.890 401 196 7 3 378 58 454 1.79e-107 323
MS.gene060187.t1 AT1G16905 43.490 384 200 6 2 381 52 422 4.01e-105 316
MS.gene060187.t1 AT1G78820 42.643 401 201 7 3 378 58 454 4.05e-103 312
MS.gene060187.t1 AT5G35370 26.431 367 214 15 39 379 86 422 2.26e-23 102
MS.gene060187.t1 AT4G00340 26.757 370 224 15 5 354 36 378 1.69e-20 94.0
MS.gene060187.t1 AT4G00340 26.757 370 224 15 5 354 36 378 1.86e-20 94.0
MS.gene060187.t1 AT4G32300 24.590 366 233 13 6 358 52 387 1.70e-19 90.9
MS.gene060187.t1 AT5G03700 24.679 389 248 16 1 379 56 409 6.09e-19 88.6
MS.gene060187.t1 AT3G12000 28.647 377 208 18 9 352 56 404 2.28e-18 86.7
MS.gene060187.t1 AT4G11900 25.587 426 234 20 9 379 49 446 3.96e-18 86.7
MS.gene060187.t1 AT4G11900 25.587 426 234 20 9 379 49 446 3.96e-18 86.7
MS.gene060187.t1 AT4G11900 25.467 428 236 20 9 381 49 448 4.19e-18 86.7
MS.gene060187.t1 AT4G11900 25.467 428 236 20 9 381 49 448 4.19e-18 86.7
MS.gene060187.t1 AT4G11900 25.467 428 236 20 9 381 49 448 4.28e-18 86.7
MS.gene060187.t1 AT4G11900 25.467 428 236 20 9 381 49 448 4.28e-18 86.7
MS.gene060187.t1 AT4G11900 25.587 426 234 20 9 379 49 446 4.39e-18 86.7
MS.gene060187.t1 AT4G11900 25.467 428 236 20 9 381 49 448 4.56e-18 86.7
MS.gene060187.t1 AT4G21390 25.378 331 210 11 39 347 79 394 6.51e-18 86.3
MS.gene060187.t1 AT4G21390 25.378 331 210 11 39 347 79 394 6.62e-18 86.3
MS.gene060187.t1 AT4G11900 25.758 396 213 18 39 381 12 379 3.01e-17 84.0
MS.gene060187.t1 AT4G11900 25.888 394 211 18 39 379 12 377 3.60e-17 84.0
MS.gene060187.t1 AT5G24080 26.055 403 231 20 6 362 49 430 3.25e-16 80.9
MS.gene060187.t1 AT1G11330 25.995 377 221 17 9 351 54 406 3.19e-15 77.8
MS.gene060187.t1 AT1G11330 25.995 377 221 17 9 351 54 406 3.41e-15 77.8
MS.gene060187.t1 AT1G11330 25.995 377 221 17 9 351 54 406 4.46e-15 77.4
MS.gene060187.t1 AT1G61380 25.959 339 201 15 39 349 70 386 1.64e-14 75.9
MS.gene060187.t1 AT1G11303 23.894 339 209 16 39 349 77 394 2.21e-14 75.5
MS.gene060187.t1 AT1G65790 24.722 360 225 12 9 347 51 385 4.78e-14 73.9
MS.gene060187.t1 AT1G65790 24.722 360 225 12 9 347 51 385 4.78e-14 73.9
MS.gene060187.t1 AT1G65790 25.000 364 219 16 9 347 51 385 7.71e-14 73.6
MS.gene060187.t1 AT4G03230 26.149 348 205 17 59 379 30 352 1.56e-13 72.8
MS.gene060187.t1 AT1G65800 28.322 286 171 13 9 281 51 315 2.92e-12 68.6
MS.gene060187.t1 AT1G65800 26.586 331 203 15 38 347 78 389 3.67e-12 68.6
MS.gene060187.t1 AT1G61390 25.656 343 197 18 39 349 91 407 3.81e-12 68.6
MS.gene060187.t1 AT2G41890 26.688 311 193 13 54 352 96 383 4.24e-12 68.2
MS.gene060187.t1 AT4G27300 24.863 366 227 16 9 347 47 391 3.25e-11 65.5
MS.gene060187.t1 AT1G61370 23.392 342 207 14 39 349 74 391 7.42e-11 64.3
MS.gene060187.t1 AT1G61360 24.189 339 207 14 39 349 69 385 8.28e-11 64.3
MS.gene060187.t1 AT4G27290 22.455 334 214 12 39 347 74 387 9.57e-11 63.9
MS.gene060187.t1 AT4G27290 22.455 334 214 12 39 347 74 387 9.79e-11 63.9

Find 85 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGAAAGATGTGGAAAATT+TGG 0.118905 2.3:-20534018 MS.gene060187:CDS
GATGAAAACCAATATTTAAT+TGG 0.200636 2.3:+20534321 None:intergenic
TAAGGCAACAACACCTTTAT+TGG 0.209968 2.3:+20534575 None:intergenic
CCATTAGAGAATGGAATATT+TGG 0.219627 2.3:-20533964 MS.gene060187:CDS
CTCCTAAGCCAATTAAATAT+TGG 0.243041 2.3:-20534329 MS.gene060187:CDS
CAGAAAGATGTGGAAAATTT+GGG 0.284978 2.3:-20534017 MS.gene060187:CDS
TGGTCCTTATAGTTTGGTTT+TGG 0.289630 2.3:-20534391 MS.gene060187:CDS
CCAAATATTCCATTCTCTAA+TGG 0.320122 2.3:+20533964 None:intergenic
CATACTCCTCCTAGAGGCTT+AGG 0.322122 2.3:+20533922 None:intergenic
AATCCATACTCAAAAGATTC+AGG 0.330365 2.3:+20534243 None:intergenic
GGGCTAAAGTGAAGGCATTT+GGG 0.333114 2.3:+20534757 None:intergenic
CAAACAAACACTTCCAATAA+AGG 0.333204 2.3:-20534588 MS.gene060187:CDS
TAATATAAAGCCAAACCTTT+AGG 0.338248 2.3:+20534366 None:intergenic
TATCTTAGGCTTGGAATTGA+TGG 0.341629 2.3:-20534144 MS.gene060187:CDS
AGCAGCTCTTCCGGTGGGTA+TGG 0.348471 2.3:-20534710 MS.gene060187:CDS
TCATCCTACAAATACCCTTT+TGG 0.349912 2.3:-20534484 MS.gene060187:CDS
AGGGCTAAAGTGAAGGCATT+TGG 0.354028 2.3:+20534756 None:intergenic
TGTTGATGGTCCTTATAGTT+TGG 0.357941 2.3:-20534397 MS.gene060187:CDS
GGCTCCAAAACCAAACTATA+AGG 0.363469 2.3:+20534387 None:intergenic
GGCTTATCTTATTACTTATT+AGG 0.367191 2.3:+20533670 None:intergenic
ATAAAGGTGTTGTTGCCTTA+AGG 0.368914 2.3:-20534572 MS.gene060187:CDS
CCCAACACATTTACAATCCT+TGG 0.370844 2.3:+20533792 None:intergenic
TTAAATATTGATCAACCAAA+AGG 0.385064 2.3:+20534469 None:intergenic
ATAGTACCTTAACATATCTT+AGG 0.400121 2.3:-20534158 MS.gene060187:CDS
ACCATTTGAGAGTAACCTTA+AGG 0.414604 2.3:+20534557 None:intergenic
TTGATGTGCGTAGTGGTGTT+TGG 0.414658 2.3:-20534095 MS.gene060187:CDS
AACGATCGGAGCAGCTCTTC+CGG 0.424012 2.3:-20534719 MS.gene060187:CDS
TTTCATTACTACAAAATTGA+AGG 0.426055 2.3:-20533886 MS.gene060187:CDS
ACTTCCGTCAATAGTTTCAT+TGG 0.433496 2.3:-20534195 MS.gene060187:CDS
ATTGACGGAAGTGGTAGAAT+TGG 0.443177 2.3:+20534206 None:intergenic
ACCTTAACATATCTTAGGCT+TGG 0.444137 2.3:-20534153 MS.gene060187:CDS
TCCAAGCCTAAGATATGTTA+AGG 0.448009 2.3:+20534152 None:intergenic
GCCTTAAGGTTACTCTCAAA+TGG 0.450182 2.3:-20534558 MS.gene060187:CDS
TCAACCAAAAGGGTATTTGT+AGG 0.451409 2.3:+20534480 None:intergenic
TACATGAGCAAATACACTAT+TGG 0.453668 2.3:-20533853 MS.gene060187:CDS
GATCAATATTTAAAACGTAA+TGG 0.454114 2.3:-20534459 MS.gene060187:CDS
TTCACTTTAGCCCTTCGAAT+CGG 0.459599 2.3:-20534747 MS.gene060187:CDS
AACCAATATTTAATTGGCTT+AGG 0.460614 2.3:+20534327 None:intergenic
GCAGCTCTTCCGGTGGGTAT+GGG 0.492435 2.3:-20534709 MS.gene060187:CDS
CCGTCAATAGTTTCATTGGT+AGG 0.500066 2.3:-20534191 MS.gene060187:CDS
TTCAATGCTCCATTCCAAGT+TGG 0.505787 2.3:-20534795 MS.gene060187:CDS
TAGAGAATGGAATATTTGGT+TGG 0.506562 2.3:-20533960 MS.gene060187:CDS
TAAATATTGATCAACCAAAA+GGG 0.511119 2.3:+20534470 None:intergenic
CAAAGATAACTCAAGGTGTT+GGG 0.512262 2.3:-20533758 MS.gene060187:CDS
ATCGTTGAAGTCCGATTCGA+AGG 0.516738 2.3:+20534736 None:intergenic
AACACCTTGAGTTATCTTTG+TGG 0.519796 2.3:+20533761 None:intergenic
ATACTCCTCCTAGAGGCTTA+GGG 0.524459 2.3:+20533923 None:intergenic
GTTAAGGTACTATTATTCAC+TGG 0.525455 2.3:+20534168 None:intergenic
ATGCTGATGGAAGAATTGTT+TGG 0.528512 2.3:-20534611 MS.gene060187:CDS
ACAAAGATAACTCAAGGTGT+TGG 0.529219 2.3:-20533759 MS.gene060187:CDS
CCAAGGATTGTAAATGTGTT+GGG 0.530997 2.3:-20533792 MS.gene060187:CDS
CTTGTGTTGGCTAATGCTGA+TGG 0.532407 2.3:-20534624 MS.gene060187:CDS
AAATGTAGCCCTAAGCCTCT+AGG 0.537850 2.3:-20533931 MS.gene060187:CDS
AATGAAACTATTGACGGAAG+TGG 0.554079 2.3:+20534197 None:intergenic
ACCAAGGATTGTAAATGTGT+TGG 0.570496 2.3:-20533793 MS.gene060187:CDS
CCTACCAATGAAACTATTGA+CGG 0.576306 2.3:+20534191 None:intergenic
GTTGGTTGTCCATTAGAGAA+TGG 0.582754 2.3:-20533973 MS.gene060187:CDS
TGTGAGGATAACCAATGTGT+TGG 0.588235 2.3:-20533991 MS.gene060187:CDS
GGCTAAAGTGAAGGCATTTG+GGG 0.589808 2.3:+20534758 None:intergenic
GATTCGAAGGGCTAAAGTGA+AGG 0.591835 2.3:+20534749 None:intergenic
CTTAATAAAACCCACGTGTG+TGG 0.596724 2.3:+20533696 None:intergenic
GATCGGAGCAGCTCTTCCGG+TGG 0.597266 2.3:-20534716 MS.gene060187:CDS
ACTACGCACATCAAGGAAGT+AGG 0.599160 2.3:+20534104 None:intergenic
TTTGATGAAGATAAAGATGA+GGG 0.601254 2.3:-20534054 MS.gene060187:CDS
GCAAATAGAGGTAATCCAGT+TGG 0.601681 2.3:-20534684 MS.gene060187:CDS
AAACACCACTACGCACATCA+AGG 0.602531 2.3:+20534097 None:intergenic
CTTTGATGAAGATAAAGATG+AGG 0.610079 2.3:-20534055 MS.gene060187:CDS
TATTTGCTTCCCATACCCAC+CGG 0.610779 2.3:+20534700 None:intergenic
TGGAAAATTTGGGCTTTGTG+AGG 0.616742 2.3:-20534007 MS.gene060187:CDS
CTAATGGACAACCAACACAT+TGG 0.620593 2.3:+20533980 None:intergenic
GTTACTCTCAAATGGTAACA+TGG 0.622365 2.3:-20534550 MS.gene060187:CDS
ATCGGAGCAGCTCTTCCGGT+GGG 0.626587 2.3:-20534715 MS.gene060187:CDS
TGTTGATGGAAATCTTGTGT+TGG 0.627952 2.3:-20534637 MS.gene060187:CDS
TCTACCACAAAGATAACTCA+AGG 0.628662 2.3:-20533765 MS.gene060187:CDS
TGGGTATGGGAAGCAAATAG+AGG 0.632819 2.3:-20534696 MS.gene060187:CDS
TGTCAATTACCAGAAAGATG+TGG 0.634945 2.3:-20534027 MS.gene060187:CDS
GCTTTGCATACTCCTCCTAG+AGG 0.645802 2.3:+20533916 None:intergenic
TCGAATCGGACTTCAACGAT+CGG 0.646165 2.3:-20534733 MS.gene060187:CDS
TACTTCCTTGATGTGCGTAG+TGG 0.646724 2.3:-20534102 MS.gene060187:CDS
TCGTTGAAGTCCGATTCGAA+GGG 0.657162 2.3:+20534737 None:intergenic
ATGTGGAAATAAATGTACCA+AGG 0.670705 2.3:-20533809 MS.gene060187:CDS
TGTAGCCCTAAGCCTCTAGG+AGG 0.678110 2.3:-20533928 MS.gene060187:CDS
AGTTCAAAATACCACACACG+TGG 0.683003 2.3:-20533707 MS.gene060187:CDS
AAAGCAAGTGAAGATGCATG+TGG 0.718199 2.3:-20533826 MS.gene060187:CDS
GTTCAAAATACCACACACGT+GGG 0.740438 2.3:-20533706 MS.gene060187:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATGAAAACCAATATTTAAT+TGG + chr2.3:20534170-20534189 None:intergenic 20.0%
!! TAAATATTGATCAACCAAAA+GGG + chr2.3:20534021-20534040 None:intergenic 20.0%
!! TTAAATATTGATCAACCAAA+AGG + chr2.3:20534022-20534041 None:intergenic 20.0%
!! TTTCATTACTACAAAATTGA+AGG - chr2.3:20534602-20534621 MS.gene060187:CDS 20.0%
!!! ATGGTTTTAATTGATACTAA+AGG - chr2.3:20533957-20533976 MS.gene060187:CDS 20.0%
!!! GATCAATATTTAAAACGTAA+TGG - chr2.3:20534029-20534048 MS.gene060187:CDS 20.0%
! ATAGTACCTTAACATATCTT+AGG - chr2.3:20534330-20534349 MS.gene060187:CDS 25.0%
! TAATATAAAGCCAAACCTTT+AGG + chr2.3:20534125-20534144 None:intergenic 25.0%
! TCAGAAAAAGAAAATGTTGA+TGG - chr2.3:20534077-20534096 MS.gene060187:CDS 25.0%
! TTTGATGAAGATAAAGATGA+GGG - chr2.3:20534434-20534453 MS.gene060187:CDS 25.0%
!! AACCAATATTTAATTGGCTT+AGG + chr2.3:20534164-20534183 None:intergenic 25.0%
!!! AATATTGGTTTTCATCTTCT+TGG - chr2.3:20534174-20534193 MS.gene060187:CDS 25.0%
!!! ATACTAAAGGTAGTTTTGTT+TGG - chr2.3:20533970-20533989 MS.gene060187:CDS 25.0%
!!! GAAAATGCAACTTTTTCATT+AGG - chr2.3:20533828-20533847 MS.gene060187:CDS 25.0%
AATCCATACTCAAAAGATTC+AGG + chr2.3:20534248-20534267 None:intergenic 30.0%
ATGTGGAAATAAATGTACCA+AGG - chr2.3:20534679-20534698 MS.gene060187:CDS 30.0%
CAAACAAACACTTCCAATAA+AGG - chr2.3:20533900-20533919 MS.gene060187:CDS 30.0%
CAGAAAGATGTGGAAAATTT+GGG - chr2.3:20534471-20534490 MS.gene060187:CDS 30.0%
CCAAATATTCCATTCTCTAA+TGG + chr2.3:20534527-20534546 None:intergenic 30.0%
CCATTAGAGAATGGAATATT+TGG - chr2.3:20534524-20534543 MS.gene060187:CDS 30.0%
CTCCTAAGCCAATTAAATAT+TGG - chr2.3:20534159-20534178 MS.gene060187:CDS 30.0%
CTTTGATGAAGATAAAGATG+AGG - chr2.3:20534433-20534452 MS.gene060187:CDS 30.0%
TACATGAGCAAATACACTAT+TGG - chr2.3:20534635-20534654 MS.gene060187:CDS 30.0%
TAGAGAATGGAATATTTGGT+TGG - chr2.3:20534528-20534547 MS.gene060187:CDS 30.0%
TAGTGTTGTAAAAACCAACT+TGG + chr2.3:20533710-20533729 None:intergenic 30.0%
TTGTAAAAACCAACTTGGAA+TGG + chr2.3:20533705-20533724 None:intergenic 30.0%
! GTTAAGGTACTATTATTCAC+TGG + chr2.3:20534323-20534342 None:intergenic 30.0%
!! AGTCTACTAACAAGTTTTGA+AGG + chr2.3:20534056-20534075 None:intergenic 30.0%
!!! ACTTTTTCATTAGGTGTTGA+TGG - chr2.3:20533837-20533856 MS.gene060187:CDS 30.0%
AACACCTTGAGTTATCTTTG+TGG + chr2.3:20534730-20534749 None:intergenic 35.0%
AATGAAACTATTGACGGAAG+TGG + chr2.3:20534294-20534313 None:intergenic 35.0%
ACAAAGATAACTCAAGGTGT+TGG - chr2.3:20534729-20534748 MS.gene060187:CDS 35.0%
ACCAAGGATTGTAAATGTGT+TGG - chr2.3:20534695-20534714 MS.gene060187:CDS 35.0%
ACCATTTGAGAGTAACCTTA+AGG + chr2.3:20533934-20533953 None:intergenic 35.0%
ACCTTAACATATCTTAGGCT+TGG - chr2.3:20534335-20534354 MS.gene060187:CDS 35.0%
ACTTCCGTCAATAGTTTCAT+TGG - chr2.3:20534293-20534312 MS.gene060187:CDS 35.0%
ATGCTGATGGAAGAATTGTT+TGG - chr2.3:20533877-20533896 MS.gene060187:CDS 35.0%
CCAAGGATTGTAAATGTGTT+GGG - chr2.3:20534696-20534715 MS.gene060187:CDS 35.0%
CCAGAAAGATGTGGAAAATT+TGG - chr2.3:20534470-20534489 MS.gene060187:CDS 35.0%
CCTACCAATGAAACTATTGA+CGG + chr2.3:20534300-20534319 None:intergenic 35.0%
GTTACTCTCAAATGGTAACA+TGG - chr2.3:20533938-20533957 MS.gene060187:CDS 35.0%
TAAGGCAACAACACCTTTAT+TGG + chr2.3:20533916-20533935 None:intergenic 35.0%
TATCTTAGGCTTGGAATTGA+TGG - chr2.3:20534344-20534363 MS.gene060187:CDS 35.0%
TCCAAGCCTAAGATATGTTA+AGG + chr2.3:20534339-20534358 None:intergenic 35.0%
TCTACCACAAAGATAACTCA+AGG - chr2.3:20534723-20534742 MS.gene060187:CDS 35.0%
TGTCAATTACCAGAAAGATG+TGG - chr2.3:20534461-20534480 MS.gene060187:CDS 35.0%
! AAAGTTGCATTTTCACCAAC+TGG + chr2.3:20533822-20533841 None:intergenic 35.0%
! CAAAGATAACTCAAGGTGTT+GGG - chr2.3:20534730-20534749 MS.gene060187:CDS 35.0%
! CCAAATTTTCCACATCTTTC+TGG + chr2.3:20534473-20534492 None:intergenic 35.0%
! TCATCCTACAAATACCCTTT+TGG - chr2.3:20534004-20534023 MS.gene060187:CDS 35.0%
! TGTTGATGGAAATCTTGTGT+TGG - chr2.3:20533851-20533870 MS.gene060187:CDS 35.0%
!! ATAAAGGTGTTGTTGCCTTA+AGG - chr2.3:20533916-20533935 MS.gene060187:CDS 35.0%
!! GATCCTGAATCTTTTGAGTA+TGG - chr2.3:20534242-20534261 MS.gene060187:CDS 35.0%
!! TCAACCAAAAGGGTATTTGT+AGG + chr2.3:20534011-20534030 None:intergenic 35.0%
!! TGGTCCTTATAGTTTGGTTT+TGG - chr2.3:20534097-20534116 MS.gene060187:CDS 35.0%
!! TGTTGATGGTCCTTATAGTT+TGG - chr2.3:20534091-20534110 MS.gene060187:CDS 35.0%
AAAGCAAGTGAAGATGCATG+TGG - chr2.3:20534662-20534681 MS.gene060187:CDS 40.0%
AGTTCAAAATACCACACACG+TGG - chr2.3:20534781-20534800 MS.gene060187:CDS 40.0%
ATTGACGGAAGTGGTAGAAT+TGG + chr2.3:20534285-20534304 None:intergenic 40.0%
CCCAACACATTTACAATCCT+TGG + chr2.3:20534699-20534718 None:intergenic 40.0%
CCGTCAATAGTTTCATTGGT+AGG - chr2.3:20534297-20534316 MS.gene060187:CDS 40.0%
CTTAATAAAACCCACGTGTG+TGG + chr2.3:20534795-20534814 None:intergenic 40.0%
GCAAATAGAGGTAATCCAGT+TGG - chr2.3:20533804-20533823 MS.gene060187:CDS 40.0%
GCCTTAAGGTTACTCTCAAA+TGG - chr2.3:20533930-20533949 MS.gene060187:CDS 40.0%
GGCTCCAAAACCAAACTATA+AGG + chr2.3:20534104-20534123 None:intergenic 40.0%
GTTCAAAATACCACACACGT+GGG - chr2.3:20534782-20534801 MS.gene060187:CDS 40.0%
GTTGGTTGTCCATTAGAGAA+TGG - chr2.3:20534515-20534534 MS.gene060187:CDS 40.0%
TGTGAGGATAACCAATGTGT+TGG - chr2.3:20534497-20534516 MS.gene060187:CDS 40.0%
TTCAATGCTCCATTCCAAGT+TGG - chr2.3:20533693-20533712 MS.gene060187:CDS 40.0%
TTCACTTTAGCCCTTCGAAT+CGG - chr2.3:20533741-20533760 MS.gene060187:CDS 40.0%
! CTAATGGACAACCAACACAT+TGG + chr2.3:20534511-20534530 None:intergenic 40.0%
! TGGAAAATTTGGGCTTTGTG+AGG - chr2.3:20534481-20534500 MS.gene060187:CDS 40.0%
!!! AGTTTGGTTTTGGAGCCTAA+AGG - chr2.3:20534107-20534126 MS.gene060187:CDS 40.0%
!!! CACACACGTGGGTTTTATTA+AGG - chr2.3:20534793-20534812 MS.gene060187:CDS 40.0%
AAACACCACTACGCACATCA+AGG + chr2.3:20534394-20534413 None:intergenic 45.0%
AAATGTAGCCCTAAGCCTCT+AGG - chr2.3:20534557-20534576 MS.gene060187:CDS 45.0%
ACTACGCACATCAAGGAAGT+AGG + chr2.3:20534387-20534406 None:intergenic 45.0%
ATACTCCTCCTAGAGGCTTA+GGG + chr2.3:20534568-20534587 None:intergenic 45.0%
GATTCGAAGGGCTAAAGTGA+AGG + chr2.3:20533742-20533761 None:intergenic 45.0%
TACTTCCTTGATGTGCGTAG+TGG - chr2.3:20534386-20534405 MS.gene060187:CDS 45.0%
TATTTGCTTCCCATACCCAC+CGG + chr2.3:20533791-20533810 None:intergenic 45.0%
TCGAATCGGACTTCAACGAT+CGG - chr2.3:20533755-20533774 MS.gene060187:CDS 45.0%
TGGGTATGGGAAGCAAATAG+AGG - chr2.3:20533792-20533811 MS.gene060187:CDS 45.0%
TTGATGTGCGTAGTGGTGTT+TGG - chr2.3:20534393-20534412 MS.gene060187:CDS 45.0%
! ATCGTTGAAGTCCGATTCGA+AGG + chr2.3:20533755-20533774 None:intergenic 45.0%
! TCGTTGAAGTCCGATTCGAA+GGG + chr2.3:20533754-20533773 None:intergenic 45.0%
!! AGGGCTAAAGTGAAGGCATT+TGG + chr2.3:20533735-20533754 None:intergenic 45.0%
!! CTTGTGTTGGCTAATGCTGA+TGG - chr2.3:20533864-20533883 MS.gene060187:CDS 45.0%
!! GGCTAAAGTGAAGGCATTTG+GGG + chr2.3:20533733-20533752 None:intergenic 45.0%
!! GGGCTAAAGTGAAGGCATTT+GGG + chr2.3:20533734-20533753 None:intergenic 45.0%
!!! GGTTTTGGAGCCTAAAGGTT+TGG - chr2.3:20534112-20534131 MS.gene060187:CDS 45.0%
CATACTCCTCCTAGAGGCTT+AGG + chr2.3:20534569-20534588 None:intergenic 50.0%
GCTTTGCATACTCCTCCTAG+AGG + chr2.3:20534575-20534594 None:intergenic 50.0%
AACGATCGGAGCAGCTCTTC+CGG - chr2.3:20533769-20533788 MS.gene060187:CDS 55.0%
TGTAGCCCTAAGCCTCTAGG+AGG - chr2.3:20534560-20534579 MS.gene060187:CDS 55.0%
AGCAGCTCTTCCGGTGGGTA+TGG - chr2.3:20533778-20533797 MS.gene060187:CDS 60.0%
ATCGGAGCAGCTCTTCCGGT+GGG - chr2.3:20533773-20533792 MS.gene060187:CDS 60.0%
GCAGCTCTTCCGGTGGGTAT+GGG - chr2.3:20533779-20533798 MS.gene060187:CDS 60.0%
GATCGGAGCAGCTCTTCCGG+TGG - chr2.3:20533772-20533791 MS.gene060187:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 20533681 20534829 20533681 ID=MS.gene060187
chr2.3 mRNA 20533681 20534829 20533681 ID=MS.gene060187.t1;Parent=MS.gene060187
chr2.3 exon 20533681 20534829 20533681 ID=MS.gene060187.t1.exon1;Parent=MS.gene060187.t1
chr2.3 CDS 20533681 20534829 20533681 ID=cds.MS.gene060187.t1;Parent=MS.gene060187.t1
Gene Sequence

>MS.gene060187

ATGATAAGCATATTCAATGCTCCATTCCAAGTTGGTTTTTACAACACTACCCCAAATGCCTTCACTTTAGCCCTTCGAATCGGACTTCAACGATCGGAGCAGCTCTTCCGGTGGGTATGGGAAGCAAATAGAGGTAATCCAGTTGGTGAAAATGCAACTTTTTCATTAGGTGTTGATGGAAATCTTGTGTTGGCTAATGCTGATGGAAGAATTGTTTGGCAAACAAACACTTCCAATAAAGGTGTTGTTGCCTTAAGGTTACTCTCAAATGGTAACATGGTTTTAATTGATACTAAAGGTAGTTTTGTTTGGCAAAGTTTTGATCATCCTACAAATACCCTTTTGGTTGATCAATATTTAAAACGTAATGGTCCTTCAAAACTTGTTAGTAGACTTTCAGAAAAAGAAAATGTTGATGGTCCTTATAGTTTGGTTTTGGAGCCTAAAGGTTTGGCTTTATATTATAAGAGTAAAAATTCTCCTAAGCCAATTAAATATTGGTTTTCATCTTCTTGGTTTTCATTTGAAAAAAGCACAATAGAAAATGTCACACTTAAATCTGATCCTGAATCTTTTGAGTATGGATTTGAAATTTTTGTTGCCAATTCTACCACTTCCGTCAATAGTTTCATTGGTAGGCCAGTGAATAATAGTACCTTAACATATCTTAGGCTTGGAATTGATGGTAATATTAAATTTCACACCTACTTCCTTGATGTGCGTAGTGGTGTTTGGAAAGTGACATACACTCTCTTTGATGAAGATAAAGATGAGGGTGAGTGTCAATTACCAGAAAGATGTGGAAAATTTGGGCTTTGTGAGGATAACCAATGTGTTGGTTGTCCATTAGAGAATGGAATATTTGGTTGGAGTAATAAATGTAGCCCTAAGCCTCTAGGAGGAGTATGCAAAGCAAGTGAATTTCATTACTACAAAATTGAAGGAGTTGAGCATTACATGAGCAAATACACTATTGGTGATAAAGCAAGTGAAGATGCATGTGGAAATAAATGTACCAAGGATTGTAAATGTGTTGGGTATTTCTACCACAAAGATAACTCAAGGTGTTGGGTAGCTTATGATCTTCAAACTCTTACTAGAGTTCAAAATACCACACACGTGGGTTTTATTAAGGTGCCTAATAAGTAA

Protein sequence

>MS.gene060187.t1

MISIFNAPFQVGFYNTTPNAFTLALRIGLQRSEQLFRWVWEANRGNPVGENATFSLGVDGNLVLANADGRIVWQTNTSNKGVVALRLLSNGNMVLIDTKGSFVWQSFDHPTNTLLVDQYLKRNGPSKLVSRLSEKENVDGPYSLVLEPKGLALYYKSKNSPKPIKYWFSSSWFSFEKSTIENVTLKSDPESFEYGFEIFVANSTTSVNSFIGRPVNNSTLTYLRLGIDGNIKFHTYFLDVRSGVWKVTYTLFDEDKDEGECQLPERCGKFGLCEDNQCVGCPLENGIFGWSNKCSPKPLGGVCKASEFHYYKIEGVEHYMSKYTIGDKASEDACGNKCTKDCKCVGYFYHKDNSRCWVAYDLQTLTRVQNTTHVGFIKVPNK