Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06507.t1 | XP_013461535.1 | 98 | 345 | 7 | 0 | 1 | 345 | 1 | 345 | 5.00E-181 | 643.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06507.t1 | Q8RXL8 | 78.0 | 354 | 69 | 1 | 1 | 345 | 1 | 354 | 7.4e-149 | 528.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06507.t1 | A0A072VBK1 | 98.0 | 345 | 7 | 0 | 1 | 345 | 1 | 345 | 3.6e-181 | 643.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24076 | MS.gene06507 | PPI |
| MS.gene24078 | MS.gene06507 | PPI |
| MS.gene88927 | MS.gene06507 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06507.t1 | MTR_3g094270 | 97.971 | 345 | 7 | 0 | 1 | 345 | 1 | 345 | 0.0 | 686 |
| MS.gene06507.t1 | MTR_3g094260 | 83.954 | 349 | 52 | 1 | 1 | 345 | 1 | 349 | 0.0 | 581 |
| MS.gene06507.t1 | MTR_4g058860 | 66.261 | 329 | 110 | 1 | 1 | 328 | 1 | 329 | 8.91e-155 | 438 |
| MS.gene06507.t1 | MTR_2g094640 | 64.157 | 332 | 115 | 2 | 1 | 328 | 1 | 332 | 1.68e-152 | 432 |
| MS.gene06507.t1 | MTR_3g095130 | 37.374 | 297 | 179 | 3 | 2 | 295 | 7 | 299 | 1.18e-58 | 192 |
| MS.gene06507.t1 | MTR_8g092190 | 39.667 | 300 | 168 | 6 | 2 | 295 | 7 | 299 | 1.50e-58 | 192 |
| MS.gene06507.t1 | MTR_1g026590 | 36.890 | 328 | 196 | 4 | 13 | 329 | 14 | 341 | 7.44e-55 | 183 |
| MS.gene06507.t1 | MTR_1g098240 | 38.516 | 283 | 173 | 1 | 14 | 295 | 17 | 299 | 4.47e-54 | 180 |
| MS.gene06507.t1 | MTR_5g004620 | 35.202 | 321 | 199 | 4 | 4 | 317 | 7 | 325 | 1.36e-51 | 175 |
| MS.gene06507.t1 | MTR_3g095130 | 36.777 | 242 | 151 | 2 | 56 | 295 | 9 | 250 | 7.63e-48 | 163 |
| MS.gene06507.t1 | MTR_1291s0010 | 70.874 | 103 | 30 | 0 | 1 | 103 | 1 | 103 | 1.43e-42 | 144 |
| MS.gene06507.t1 | MTR_5g096310 | 28.783 | 337 | 221 | 4 | 10 | 333 | 55 | 385 | 1.47e-35 | 133 |
| MS.gene06507.t1 | MTR_2g038410 | 26.994 | 326 | 224 | 3 | 10 | 331 | 54 | 369 | 1.03e-31 | 122 |
| MS.gene06507.t1 | MTR_3g072380 | 25.397 | 315 | 217 | 6 | 22 | 325 | 26 | 333 | 2.10e-24 | 102 |
| MS.gene06507.t1 | MTR_1g030320 | 24.921 | 317 | 219 | 6 | 22 | 325 | 25 | 335 | 2.34e-23 | 99.4 |
| MS.gene06507.t1 | MTR_0011s0320 | 24.419 | 344 | 209 | 13 | 22 | 332 | 25 | 350 | 9.65e-16 | 77.8 |
| MS.gene06507.t1 | MTR_4g114360 | 25.305 | 328 | 198 | 13 | 22 | 319 | 25 | 335 | 1.48e-15 | 77.0 |
| MS.gene06507.t1 | MTR_3g107470 | 24.771 | 327 | 201 | 13 | 22 | 319 | 29 | 339 | 1.81e-14 | 73.9 |
| MS.gene06507.t1 | MTR_2g070400 | 23.894 | 339 | 238 | 10 | 1 | 325 | 1 | 333 | 1.02e-11 | 65.5 |
| MS.gene06507.t1 | MTR_7g110380 | 23.724 | 333 | 228 | 11 | 22 | 341 | 26 | 345 | 2.95e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06507.t1 | AT1G06890 | 77.966 | 354 | 69 | 1 | 1 | 345 | 1 | 354 | 0.0 | 535 |
| MS.gene06507.t1 | AT1G06890 | 77.966 | 354 | 69 | 1 | 1 | 345 | 1 | 354 | 0.0 | 535 |
| MS.gene06507.t1 | AT2G30460 | 77.714 | 350 | 73 | 1 | 1 | 345 | 1 | 350 | 0.0 | 533 |
| MS.gene06507.t1 | AT2G30460 | 77.714 | 350 | 73 | 1 | 1 | 345 | 1 | 350 | 0.0 | 533 |
| MS.gene06507.t1 | AT1G06890 | 80.896 | 335 | 64 | 0 | 1 | 335 | 1 | 335 | 0.0 | 528 |
| MS.gene06507.t1 | AT1G06890 | 80.896 | 335 | 64 | 0 | 1 | 335 | 1 | 335 | 0.0 | 527 |
| MS.gene06507.t1 | AT2G30460 | 73.414 | 331 | 81 | 2 | 20 | 345 | 1 | 329 | 2.28e-178 | 497 |
| MS.gene06507.t1 | AT2G30460 | 73.414 | 331 | 81 | 2 | 20 | 345 | 1 | 329 | 2.28e-178 | 497 |
| MS.gene06507.t1 | AT2G30460 | 73.414 | 331 | 81 | 2 | 20 | 345 | 1 | 329 | 2.28e-178 | 497 |
| MS.gene06507.t1 | AT2G28315 | 64.140 | 343 | 118 | 2 | 1 | 339 | 1 | 342 | 6.95e-156 | 441 |
| MS.gene06507.t1 | AT2G28315 | 69.737 | 304 | 92 | 0 | 1 | 304 | 1 | 304 | 2.21e-153 | 433 |
| MS.gene06507.t1 | AT2G30460 | 83.784 | 222 | 36 | 0 | 1 | 222 | 1 | 222 | 3.81e-120 | 350 |
| MS.gene06507.t1 | AT4G09810 | 39.873 | 316 | 181 | 4 | 13 | 321 | 16 | 329 | 2.34e-65 | 210 |
| MS.gene06507.t1 | AT1G34020 | 37.942 | 311 | 184 | 4 | 18 | 321 | 21 | 329 | 5.77e-61 | 199 |
| MS.gene06507.t1 | AT1G34020 | 37.942 | 311 | 184 | 4 | 18 | 321 | 21 | 329 | 5.77e-61 | 199 |
| MS.gene06507.t1 | AT1G34020 | 37.942 | 311 | 184 | 4 | 18 | 321 | 21 | 329 | 5.77e-61 | 199 |
| MS.gene06507.t1 | AT5G42420 | 35.669 | 314 | 196 | 2 | 12 | 319 | 16 | 329 | 2.30e-59 | 195 |
| MS.gene06507.t1 | AT1G21070 | 37.459 | 307 | 186 | 3 | 3 | 305 | 7 | 311 | 3.24e-59 | 194 |
| MS.gene06507.t1 | AT1G76670 | 36.760 | 321 | 197 | 3 | 3 | 319 | 6 | 324 | 1.58e-58 | 192 |
| MS.gene06507.t1 | AT1G76670 | 36.760 | 321 | 197 | 3 | 3 | 319 | 6 | 324 | 1.58e-58 | 192 |
| MS.gene06507.t1 | AT4G39390 | 36.842 | 285 | 179 | 1 | 12 | 295 | 16 | 300 | 6.90e-57 | 188 |
| MS.gene06507.t1 | AT4G39390 | 36.842 | 285 | 179 | 1 | 12 | 295 | 20 | 304 | 6.97e-57 | 188 |
| MS.gene06507.t1 | AT4G39390 | 36.842 | 285 | 179 | 1 | 12 | 295 | 20 | 304 | 6.97e-57 | 188 |
| MS.gene06507.t1 | AT4G09810 | 39.464 | 261 | 151 | 3 | 66 | 321 | 14 | 272 | 2.64e-55 | 182 |
| MS.gene06507.t1 | AT4G09810 | 41.905 | 210 | 118 | 2 | 13 | 220 | 16 | 223 | 1.26e-44 | 153 |
| MS.gene06507.t1 | AT5G55950 | 30.088 | 339 | 219 | 5 | 10 | 337 | 56 | 387 | 7.17e-39 | 142 |
| MS.gene06507.t1 | AT5G55950 | 29.940 | 334 | 216 | 5 | 15 | 337 | 1 | 327 | 6.03e-38 | 139 |
| MS.gene06507.t1 | AT5G57100 | 29.655 | 290 | 196 | 2 | 10 | 295 | 63 | 348 | 7.53e-36 | 134 |
| MS.gene06507.t1 | AT5G55950 | 29.966 | 297 | 196 | 4 | 46 | 337 | 20 | 309 | 1.92e-34 | 129 |
| MS.gene06507.t1 | AT5G42420 | 28.025 | 314 | 153 | 7 | 12 | 319 | 16 | 262 | 3.96e-29 | 114 |
| MS.gene06507.t1 | AT5G55950 | 30.992 | 242 | 155 | 3 | 10 | 245 | 56 | 291 | 6.87e-28 | 111 |
| MS.gene06507.t1 | AT5G57100 | 28.750 | 240 | 163 | 2 | 10 | 245 | 63 | 298 | 1.16e-26 | 107 |
| MS.gene06507.t1 | AT5G57100 | 30.303 | 198 | 134 | 1 | 98 | 295 | 40 | 233 | 7.37e-25 | 102 |
| MS.gene06507.t1 | AT5G57100 | 31.395 | 172 | 114 | 1 | 10 | 177 | 63 | 234 | 9.81e-22 | 93.6 |
| MS.gene06507.t1 | AT1G77610 | 24.444 | 315 | 221 | 5 | 22 | 325 | 20 | 328 | 3.99e-20 | 90.1 |
| MS.gene06507.t1 | AT1G21870 | 25.000 | 320 | 227 | 5 | 22 | 332 | 26 | 341 | 2.82e-19 | 87.8 |
| MS.gene06507.t1 | AT5G11230 | 25.348 | 359 | 223 | 12 | 9 | 330 | 1 | 351 | 5.37e-19 | 87.0 |
| MS.gene06507.t1 | AT5G25400 | 25.455 | 330 | 222 | 10 | 22 | 338 | 29 | 347 | 4.18e-17 | 81.6 |
| MS.gene06507.t1 | AT2G25520 | 25.836 | 329 | 197 | 13 | 22 | 320 | 29 | 340 | 1.27e-15 | 77.4 |
| MS.gene06507.t1 | AT4G32390 | 25.466 | 322 | 208 | 12 | 22 | 320 | 29 | 341 | 5.30e-15 | 75.5 |
| MS.gene06507.t1 | AT5G05820 | 23.826 | 298 | 208 | 4 | 11 | 295 | 11 | 302 | 2.37e-11 | 64.3 |
| MS.gene06507.t1 | AT3G11320 | 24.497 | 298 | 206 | 6 | 11 | 295 | 11 | 302 | 3.41e-11 | 63.9 |
Find 50 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGTACATTTCTTGTAAT+TGG | 0.131705 | 3.2:-79038425 | MS.gene06507:CDS |
| TTCTCTTGCAATCCTACTTT+TGG | 0.149841 | 3.2:-79039365 | MS.gene06507:CDS |
| GTTGATAACCGGACCATATT+TGG | 0.214078 | 3.2:-79038629 | MS.gene06507:CDS |
| GAGAAACATACTAGGAATTT+TGG | 0.218917 | 3.2:-79038306 | MS.gene06507:CDS |
| GTAGGATTGCAAGAGAAAAT+TGG | 0.229086 | 3.2:+79039371 | None:intergenic |
| CCCCTCATTAACGTGGAAAA+TGG | 0.263001 | 3.2:-79038072 | MS.gene06507:CDS |
| ACATGTCTTGTACTGGCTTT+TGG | 0.278525 | 3.2:-79038359 | MS.gene06507:CDS |
| CAGAAAGCGGTGATGGGATT+TGG | 0.280505 | 3.2:-79040510 | MS.gene06507:CDS |
| AACAAGGTTGCTGCCTGATA+TGG | 0.285190 | 3.2:+79038649 | None:intergenic |
| AACTGCAGCACAAGCATTAC+AGG | 0.298578 | 3.2:-79038216 | MS.gene06507:intron |
| TGGGTTGTTAAATTTGAGTC+TGG | 0.300848 | 3.2:-79040466 | MS.gene06507:CDS |
| AGTATGTTTCTCCAACTAAA+AGG | 0.331771 | 3.2:+79038317 | None:intergenic |
| CCAAGGACTTGGTAGGTAAC+TGG | 0.383495 | 3.2:+79038392 | None:intergenic |
| TTCATGTCTTATTTCTATCT+CGG | 0.391540 | 3.2:-79038453 | MS.gene06507:CDS |
| ATATCAATCATGTCCATATC+AGG | 0.392944 | 3.2:-79038662 | MS.gene06507:CDS |
| TAGGATTGCAAGAGAAAATT+GGG | 0.413584 | 3.2:+79039372 | None:intergenic |
| GGGTTGTTAAATTTGAGTCT+GGG | 0.441493 | 3.2:-79040465 | MS.gene06507:CDS |
| AGTCTGGGTTTCAATTCTGT+TGG | 0.443753 | 3.2:-79040450 | MS.gene06507:CDS |
| CAATTCTGTTGGATTCTACC+AGG | 0.443860 | 3.2:-79040439 | MS.gene06507:intron |
| GTGCACCGATAGTTCCCAAT+TGG | 0.446550 | 3.2:+79041670 | None:intergenic |
| ATCACCGCTTTCTGCTCAAA+AGG | 0.450801 | 3.2:+79040519 | None:intergenic |
| TCTTAAGATGTCCAAGGACT+TGG | 0.466403 | 3.2:+79038381 | None:intergenic |
| TTCTGAATGGAATCTCGATT+GGG | 0.468543 | 3.2:-79040485 | MS.gene06507:CDS |
| ATTCTGAATGGAATCTCGAT+TGG | 0.469832 | 3.2:-79040486 | MS.gene06507:CDS |
| GCAGCAACCTTGTTGATAAC+CGG | 0.471022 | 3.2:-79038640 | MS.gene06507:CDS |
| CCAGTTACCTACCAAGTCCT+TGG | 0.485286 | 3.2:-79038392 | MS.gene06507:CDS |
| GATTTACAACTCAATGCGTT+GGG | 0.485909 | 3.2:-79039319 | MS.gene06507:CDS |
| CAGCTACAACATTGACAAGT+TGG | 0.486149 | 3.2:-79040605 | MS.gene06507:CDS |
| AATTCCGTGTACTATTCTAC+TGG | 0.494484 | 3.2:-79040297 | MS.gene06507:CDS |
| CAATTCCAACACCCAAAAGT+AGG | 0.494991 | 3.2:+79039353 | None:intergenic |
| TGATTTACAACTCAATGCGT+TGG | 0.498236 | 3.2:-79039320 | MS.gene06507:CDS |
| TTTAGTTGGAGAAACATACT+AGG | 0.501343 | 3.2:-79038314 | MS.gene06507:CDS |
| ATGGGATTTGGAATTCTGAA+TGG | 0.502641 | 3.2:-79040498 | MS.gene06507:CDS |
| TCTTAAGACATGTCTTGTAC+TGG | 0.504547 | 3.2:-79038366 | MS.gene06507:CDS |
| GATTCTCAAGAATGCAAAAG+TGG | 0.512823 | 3.2:+79038255 | None:intergenic |
| AAATTCCAATTGGGAACTAT+CGG | 0.532072 | 3.2:-79041675 | MS.gene06507:CDS |
| ATGCATTCAGATGACAAAGT+TGG | 0.545812 | 3.2:-79040324 | MS.gene06507:intron |
| TTTGAGCAGAAAGCGGTGAT+GGG | 0.547487 | 3.2:-79040516 | MS.gene06507:CDS |
| GAAGTACAATATTGAACAAG+AGG | 0.558506 | 3.2:-79038050 | MS.gene06507:CDS |
| ATTCTCAAGAATGCAAAAGT+GGG | 0.604113 | 3.2:+79038256 | None:intergenic |
| ATCTGATCCCCTCATTAACG+TGG | 0.611663 | 3.2:-79038079 | MS.gene06507:CDS |
| ATATGGTCCGGTTATCAACA+AGG | 0.616786 | 3.2:+79038633 | None:intergenic |
| CAAGTACACAACACAAGTGA+CGG | 0.633666 | 3.2:-79038572 | MS.gene06507:intron |
| GTCGATTGTGATTTGTAACA+AGG | 0.635859 | 3.2:-79041622 | MS.gene06507:CDS |
| CGGTGCACTAAGTCTATCTG+TGG | 0.644881 | 3.2:-79041655 | MS.gene06507:CDS |
| ATACATAAGCATCCCAACCA+TGG | 0.648173 | 3.2:+79038280 | None:intergenic |
| AATAAGACATGAAAGAACGA+TGG | 0.661070 | 3.2:+79038463 | None:intergenic |
| AAGATGTCCAAGGACTTGGT+AGG | 0.668600 | 3.2:+79038385 | None:intergenic |
| ATCTCCAGTAGAATAGTACA+CGG | 0.681945 | 3.2:+79040293 | None:intergenic |
| GACATGTCTTAAGATGTCCA+AGG | 0.714030 | 3.2:+79038375 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAAAAAATATGATATT+AGG | + | chr3.2:79038765-79038784 | None:intergenic | 10.0% |
| !! | TAAAAGTAATATTGATAAAA+TGG | + | chr3.2:79040093-79040112 | None:intergenic | 10.0% |
| !! | TAAATTATTAAGGTTATTAT+TGG | - | chr3.2:79040151-79040170 | MS.gene06507:intron | 10.0% |
| !!! | AAAAATGATAATGATAATTT+TGG | + | chr3.2:79039949-79039968 | None:intergenic | 10.0% |
| !!! | ATTATCATTATCATTTTTTA+TGG | - | chr3.2:79039951-79039970 | MS.gene06507:intron | 10.0% |
| !! | TAAACACAAAAAATAGATAA+TGG | + | chr3.2:79039738-79039757 | None:intergenic | 15.0% |
| !! | TCGTTAAAAATAATTTCATA+AGG | + | chr3.2:79040565-79040584 | None:intergenic | 15.0% |
| !!! | AATTTTACTTTTCCATAATA+AGG | + | chr3.2:79040763-79040782 | None:intergenic | 15.0% |
| !!! | ATTTTACTTTTCCATAATAA+GGG | + | chr3.2:79040762-79040781 | None:intergenic | 15.0% |
| !!! | TAGATAATTTAATTTAAACG+AGG | - | chr3.2:79038279-79038298 | MS.gene06507:CDS | 15.0% |
| !!! | TATCATAAGAACAATTTTAT+AGG | + | chr3.2:79040642-79040661 | None:intergenic | 15.0% |
| !!! | TTTTTATTTGCAATTTGATA+TGG | - | chr3.2:79038165-79038184 | MS.gene06507:intron | 15.0% |
| !! | AAAATATTAAAAAGGAACGA+AGG | - | chr3.2:79040250-79040269 | MS.gene06507:intron | 20.0% |
| !! | AACTATAAAATGTTTGAGTA+TGG | + | chr3.2:79039809-79039828 | None:intergenic | 20.0% |
| !! | ACAAAAGTAACAAAGTTAAT+TGG | - | chr3.2:79040193-79040212 | MS.gene06507:intron | 20.0% |
| !! | ATTTACTTTAATCGACAATA+AGG | + | chr3.2:79038524-79038543 | None:intergenic | 20.0% |
| !! | CAAAATAAAATCTATGAATG+CGG | + | chr3.2:79038943-79038962 | None:intergenic | 20.0% |
| !! | CAGTAAATACTTTAATAGTT+AGG | + | chr3.2:79038860-79038879 | None:intergenic | 20.0% |
| !! | GAAATTGAGATAATTGTAAA+TGG | + | chr3.2:79039553-79039572 | None:intergenic | 20.0% |
| !! | TTATCGTCTATATACATTTA+TGG | - | chr3.2:79039479-79039498 | MS.gene06507:intron | 20.0% |
| !! | TTTAGTACATTTCTTGTAAT+TGG | - | chr3.2:79041285-79041304 | MS.gene06507:intron | 20.0% |
| !!! | ACTTATATTTTCCCTTATTA+TGG | - | chr3.2:79040748-79040767 | MS.gene06507:intron | 20.0% |
| !!! | ATATAAGATCTTTTTTGTTC+CGG | + | chr3.2:79038588-79038607 | None:intergenic | 20.0% |
| !!! | ATTAAAGTATTTACTGGATT+TGG | - | chr3.2:79038864-79038883 | MS.gene06507:intron | 20.0% |
| !!! | CTAACTATTAAAGTATTTAC+TGG | - | chr3.2:79038858-79038877 | MS.gene06507:intron | 20.0% |
| !!! | GCATTCATAGATTTTATTTT+GGG | - | chr3.2:79038942-79038961 | MS.gene06507:intron | 20.0% |
| !!! | TTAAAGTATTTACTGGATTT+GGG | - | chr3.2:79038865-79038884 | MS.gene06507:intron | 20.0% |
| ! | AAATGTATATAGACGATAAG+AGG | + | chr3.2:79039478-79039497 | None:intergenic | 25.0% |
| ! | AATATGATATTAGGTCACAT+CGG | + | chr3.2:79038756-79038775 | None:intergenic | 25.0% |
| ! | ACAAAGTTAATTGGTTACTT+TGG | - | chr3.2:79040202-79040221 | MS.gene06507:intron | 25.0% |
| ! | ATAAGTTTGAATGTTTGATG+AGG | - | chr3.2:79038436-79038455 | MS.gene06507:CDS | 25.0% |
| ! | ATTAGAACTTATCATCAACA+AGG | + | chr3.2:79038472-79038491 | None:intergenic | 25.0% |
| ! | CCATGATAAAACTAATTGAA+TGG | + | chr3.2:79038823-79038842 | None:intergenic | 25.0% |
| ! | GATAGAGAAAAATTCCAATT+GGG | - | chr3.2:79038026-79038045 | MS.gene06507:CDS | 25.0% |
| ! | TAAGTTTGAATGTTTGATGA+GGG | - | chr3.2:79038437-79038456 | MS.gene06507:CDS | 25.0% |
| ! | TAATATTGATAAAATGGCAG+AGG | + | chr3.2:79040087-79040106 | None:intergenic | 25.0% |
| ! | TATTTGCAATTTGATATGGT+TGG | - | chr3.2:79038169-79038188 | MS.gene06507:intron | 25.0% |
| ! | TCTCCATTTCTCAAAATAAA+TGG | + | chr3.2:79039782-79039801 | None:intergenic | 25.0% |
| ! | TGATAGAGAAAAATTCCAAT+TGG | - | chr3.2:79038025-79038044 | MS.gene06507:CDS | 25.0% |
| !! | AATCCTTTATTGTTGTTGTT+TGG | - | chr3.2:79039323-79039342 | MS.gene06507:CDS | 25.0% |
| !! | AATTTTATCCAAATATGGTC+CGG | + | chr3.2:79041092-79041111 | None:intergenic | 25.0% |
| !! | AGTACATTGCAATTCATTTT+TGG | - | chr3.2:79038119-79038138 | MS.gene06507:intron | 25.0% |
| !! | CAAGAGTGAAATTTTCTTTA+AGG | + | chr3.2:79040470-79040489 | None:intergenic | 25.0% |
| !! | CTTTTTCCTTATTCCAAATA+GGG | + | chr3.2:79041688-79041707 | None:intergenic | 25.0% |
| !! | GTGAGAATTTTATCCAAATA+TGG | + | chr3.2:79041097-79041116 | None:intergenic | 25.0% |
| !! | TCTTTTTCCTTATTCCAAAT+AGG | + | chr3.2:79041689-79041708 | None:intergenic | 25.0% |
| !! | TTGATAGATTTGAGATTCTT+TGG | - | chr3.2:79038303-79038322 | MS.gene06507:CDS | 25.0% |
| !! | TTTTATATCCTACGTAGTTA+AGG | - | chr3.2:79039016-79039035 | MS.gene06507:intron | 25.0% |
| !! | TTTTTATGCATATGTTCCAA+GGG | + | chr3.2:79038682-79038701 | None:intergenic | 25.0% |
| !! | TTTTTCCTTATTCCAAATAG+GGG | + | chr3.2:79041687-79041706 | None:intergenic | 25.0% |
| !!! | AAGAAACCTTAAACTTTTTC+TGG | + | chr3.2:79041015-79041034 | None:intergenic | 25.0% |
| !!! | ACTCCATTTATTTTGAGAAA+TGG | - | chr3.2:79039776-79039795 | MS.gene06507:intron | 25.0% |
| !!! | ATCCTTTATTGTTGTTGTTT+GGG | - | chr3.2:79039324-79039343 | MS.gene06507:CDS | 25.0% |
| !!! | CCATTCAATTAGTTTTATCA+TGG | - | chr3.2:79038820-79038839 | MS.gene06507:intron | 25.0% |
| !!! | CGCATTCATAGATTTTATTT+TGG | - | chr3.2:79038941-79038960 | MS.gene06507:intron | 25.0% |
| !!! | TAAAAGAGTGCTTACATATA+AGG | + | chr3.2:79039630-79039649 | None:intergenic | 25.0% |
| !!! | TTCATGTCTTATTTCTATCT+CGG | - | chr3.2:79041257-79041276 | MS.gene06507:intron | 25.0% |
| !!! | TTTTTTATGCATATGTTCCA+AGG | + | chr3.2:79038683-79038702 | None:intergenic | 25.0% |
| AAATATGTTGCTAACAACAC+AGG | - | chr3.2:79040586-79040605 | MS.gene06507:CDS | 30.0% | |
| AAATTCCAATTGGGAACTAT+CGG | - | chr3.2:79038035-79038054 | MS.gene06507:CDS | 30.0% | |
| AATAAGACATGAAAGAACGA+TGG | + | chr3.2:79041250-79041269 | None:intergenic | 30.0% | |
| AATATGTTGCTAACAACACA+GGG | - | chr3.2:79040587-79040606 | MS.gene06507:CDS | 30.0% | |
| AATTTATCCTATTAGTCCCT+TGG | - | chr3.2:79038663-79038682 | MS.gene06507:CDS | 30.0% | |
| AGTATGTTTCTCCAACTAAA+AGG | + | chr3.2:79041396-79041415 | None:intergenic | 30.0% | |
| ATATCAATCATGTCCATATC+AGG | - | chr3.2:79041048-79041067 | MS.gene06507:intron | 30.0% | |
| ATATGTCATCTCACATACAA+AGG | + | chr3.2:79040710-79040729 | None:intergenic | 30.0% | |
| ATTCTCAAGAATGCAAAAGT+GGG | + | chr3.2:79041457-79041476 | None:intergenic | 30.0% | |
| CATTTCATTTGAGCATGATT+TGG | - | chr3.2:79040859-79040878 | MS.gene06507:intron | 30.0% | |
| GAAGTACAATATTGAACAAG+AGG | - | chr3.2:79041660-79041679 | MS.gene06507:CDS | 30.0% | |
| GAGACTTGTGAATATCATAA+AGG | + | chr3.2:79039898-79039917 | None:intergenic | 30.0% | |
| TAGGATTGCAAGAGAAAATT+GGG | + | chr3.2:79040341-79040360 | None:intergenic | 30.0% | |
| TATGTCATCTCACATACAAA+GGG | + | chr3.2:79040709-79040728 | None:intergenic | 30.0% | |
| TGTGTCTTTGTCTTTCTAAA+TGG | + | chr3.2:79039578-79039597 | None:intergenic | 30.0% | |
| TTAGATATGTAGACGTCTAA+AGG | - | chr3.2:79039055-79039074 | MS.gene06507:intron | 30.0% | |
| TTTAGTTGGAGAAACATACT+AGG | - | chr3.2:79041396-79041415 | MS.gene06507:intron | 30.0% | |
| ! | GAGAAACATACTAGGAATTT+TGG | - | chr3.2:79041404-79041423 | MS.gene06507:intron | 30.0% |
| ! | TACATTTTGTTCTCTTCATG+TGG | - | chr3.2:79039139-79039158 | MS.gene06507:intron | 30.0% |
| ! | TCTACATATCTAAGACAAGT+AGG | + | chr3.2:79039048-79039067 | None:intergenic | 30.0% |
| ! | TGTAAGCACTCTTTTATTAG+AGG | - | chr3.2:79039634-79039653 | MS.gene06507:intron | 30.0% |
| ! | TTTACCAATAAAAAAGCACG+AGG | + | chr3.2:79041549-79041568 | None:intergenic | 30.0% |
| ! | TTTTCCTTATTCCAAATAGG+GGG | + | chr3.2:79041686-79041705 | None:intergenic | 30.0% |
| ! | TTTTTCTTGGCAAGAAATTC+AGG | - | chr3.2:79039442-79039461 | MS.gene06507:intron | 30.0% |
| !! | AACCTTAAACTTTTTCTGGA+TGG | + | chr3.2:79041011-79041030 | None:intergenic | 30.0% |
| !! | TTCTTTGGAATCACATCAAA+TGG | - | chr3.2:79038318-79038337 | MS.gene06507:CDS | 30.0% |
| !!! | AACTGCTCTAGTTTTTACAA+TGG | - | chr3.2:79040492-79040511 | MS.gene06507:CDS | 30.0% |
| !!! | GACTTGCACTATTTTTTGTT+AGG | - | chr3.2:79038391-79038410 | MS.gene06507:CDS | 30.0% |
| !!! | TATTCCTCGTGCTTTTTTAT+TGG | - | chr3.2:79041542-79041561 | MS.gene06507:intron | 30.0% |
| !!! | TGAGTTTTTTTTTTCTTCCG+TGG | - | chr3.2:79038207-79038226 | MS.gene06507:intron | 30.0% |
| AAATGCGACGAAAGAAACAT+AGG | + | chr3.2:79040011-79040030 | None:intergenic | 35.0% | |
| AATGCGACGAAAGAAACATA+GGG | + | chr3.2:79040010-79040029 | None:intergenic | 35.0% | |
| AATTCCGTGTACTATTCTAC+TGG | - | chr3.2:79039413-79039432 | MS.gene06507:intron | 35.0% | |
| ACACGTACAAAAAAAACACC+TGG | + | chr3.2:79039292-79039311 | None:intergenic | 35.0% | |
| ATATGTTCCAAGGGACTAAT+AGG | + | chr3.2:79038673-79038692 | None:intergenic | 35.0% | |
| ATCATGAAAAAGCAGATGCA+TGG | + | chr3.2:79038255-79038274 | None:intergenic | 35.0% | |
| ATCTCCAGTAGAATAGTACA+CGG | + | chr3.2:79039420-79039439 | None:intergenic | 35.0% | |
| ATGCATTCAGATGACAAAGT+TGG | - | chr3.2:79039386-79039405 | MS.gene06507:intron | 35.0% | |
| ATTCTGAATGGAATCTCGAT+TGG | - | chr3.2:79039224-79039243 | MS.gene06507:intron | 35.0% | |
| CACCATCCAGAAAAAGTTTA+AGG | - | chr3.2:79041006-79041025 | MS.gene06507:intron | 35.0% | |
| CCTGAAAACATTGGAAAACA+AGG | + | chr3.2:79041598-79041617 | None:intergenic | 35.0% | |
| GATTCTCAAGAATGCAAAAG+TGG | + | chr3.2:79041458-79041477 | None:intergenic | 35.0% | |
| GATTTACAACTCAATGCGTT+GGG | - | chr3.2:79040391-79040410 | MS.gene06507:intron | 35.0% | |
| GGGTTGTTAAATTTGAGTCT+GGG | - | chr3.2:79039245-79039264 | MS.gene06507:intron | 35.0% | |
| GTAGACGTCTAAAGGTTTAA+TGG | - | chr3.2:79039063-79039082 | MS.gene06507:intron | 35.0% | |
| GTAGGATTGCAAGAGAAAAT+TGG | + | chr3.2:79040342-79040361 | None:intergenic | 35.0% | |
| GTCTTTGTCTTTCTAAATGG+AGG | + | chr3.2:79039575-79039594 | None:intergenic | 35.0% | |
| TATGATATTCACAAGTCTCG+AGG | - | chr3.2:79039899-79039918 | MS.gene06507:intron | 35.0% | |
| TCTTAAGACATGTCTTGTAC+TGG | - | chr3.2:79041344-79041363 | MS.gene06507:intron | 35.0% | |
| TGATTTACAACTCAATGCGT+TGG | - | chr3.2:79040390-79040409 | MS.gene06507:intron | 35.0% | |
| TGCCCAAACAACAACAATAA+AGG | + | chr3.2:79039329-79039348 | None:intergenic | 35.0% | |
| TGGGTTGTTAAATTTGAGTC+TGG | - | chr3.2:79039244-79039263 | MS.gene06507:intron | 35.0% | |
| TTCTGAATGGAATCTCGATT+GGG | - | chr3.2:79039225-79039244 | MS.gene06507:intron | 35.0% | |
| TTTCCAAGACATCGTGTAAT+TGG | - | chr3.2:79039846-79039865 | MS.gene06507:intron | 35.0% | |
| ! | ACATATCTAAGACAAGTAGG+AGG | + | chr3.2:79039045-79039064 | None:intergenic | 35.0% |
| ! | AGAGTGCTTACATATAAGGA+CGG | + | chr3.2:79039626-79039645 | None:intergenic | 35.0% |
| ! | ATGGGATTTGGAATTCTGAA+TGG | - | chr3.2:79039212-79039231 | MS.gene06507:intron | 35.0% |
| ! | CTACTGGAGATTCTTTTTCT+TGG | - | chr3.2:79039429-79039448 | MS.gene06507:intron | 35.0% |
| ! | GTCGATTGTGATTTGTAACA+AGG | - | chr3.2:79038088-79038107 | MS.gene06507:CDS | 35.0% |
| ! | TCCATTTTCCACGTTAATGA+GGG | + | chr3.2:79041642-79041661 | None:intergenic | 35.0% |
| ! | TTCCATTTTCCACGTTAATG+AGG | + | chr3.2:79041643-79041662 | None:intergenic | 35.0% |
| ! | TTCTCTTGCAATCCTACTTT+TGG | - | chr3.2:79040345-79040364 | MS.gene06507:intron | 35.0% |
| ! | TTGTACGTGATCCTTTTAGT+TGG | - | chr3.2:79041382-79041401 | MS.gene06507:intron | 35.0% |
| !! | AACTTATCGTCCTTTTCAAG+TGG | + | chr3.2:79040909-79040928 | None:intergenic | 35.0% |
| !! | AATGTTTTCAGGCAAGAGAA+GGG | - | chr3.2:79041606-79041625 | MS.gene06507:CDS | 35.0% |
| !! | GCAAAGAGTGCTTACATATA+GGG | - | chr3.2:79039656-79039675 | MS.gene06507:intron | 35.0% |
| !! | TCTCTTGCAATCCTACTTTT+GGG | - | chr3.2:79040346-79040365 | MS.gene06507:intron | 35.0% |
| !!! | CCTTGTTTTCCAATGTTTTC+AGG | - | chr3.2:79041595-79041614 | MS.gene06507:CDS | 35.0% |
| !!! | GATTTTATTTTGGGCACAAG+AGG | - | chr3.2:79038951-79038970 | MS.gene06507:intron | 35.0% |
| AGTCTGGGTTTCAATTCTGT+TGG | - | chr3.2:79039260-79039279 | MS.gene06507:intron | 40.0% | |
| ATACATAAGCATCCCAACCA+TGG | + | chr3.2:79041433-79041452 | None:intergenic | 40.0% | |
| ATATGGTCCGGTTATCAACA+AGG | + | chr3.2:79041080-79041099 | None:intergenic | 40.0% | |
| CAAGTACACAACACAAGTGA+CGG | - | chr3.2:79041138-79041157 | MS.gene06507:intron | 40.0% | |
| CAATTCCAACACCCAAAAGT+AGG | + | chr3.2:79040360-79040379 | None:intergenic | 40.0% | |
| CAATTCTGTTGGATTCTACC+AGG | - | chr3.2:79039271-79039290 | MS.gene06507:CDS | 40.0% | |
| CAGCTACAACATTGACAAGT+TGG | - | chr3.2:79039105-79039124 | MS.gene06507:intron | 40.0% | |
| CTTCTCTTGCCTGAAAACAT+TGG | + | chr3.2:79041607-79041626 | None:intergenic | 40.0% | |
| GACATGTCTTAAGATGTCCA+AGG | + | chr3.2:79041338-79041357 | None:intergenic | 40.0% | |
| GCTATGTTGACCACTTGAAA+AGG | - | chr3.2:79040896-79040915 | MS.gene06507:intron | 40.0% | |
| GCTGCTTGATGTACAAATCA+TGG | + | chr3.2:79038566-79038585 | None:intergenic | 40.0% | |
| TCACATACAAAGGGAAGCTT+AGG | + | chr3.2:79040700-79040719 | None:intergenic | 40.0% | |
| TCTTAAGATGTCCAAGGACT+TGG | + | chr3.2:79041332-79041351 | None:intergenic | 40.0% | |
| TTGCCAATTACACGATGTCT+TGG | + | chr3.2:79039852-79039871 | None:intergenic | 40.0% | |
| ! | AGAGTGCTTACATATAGGGA+CGG | - | chr3.2:79039660-79039679 | MS.gene06507:intron | 40.0% |
| ! | CCATTTTCCACGTTAATGAG+GGG | + | chr3.2:79041641-79041660 | None:intergenic | 40.0% |
| ! | GGGCTCTTTCTTATCTTTTC+TGG | - | chr3.2:79040411-79040430 | MS.gene06507:intron | 40.0% |
| ! | TGATTTGTACATCAAGCAGC+CGG | - | chr3.2:79038566-79038585 | MS.gene06507:intron | 40.0% |
| ! | TGGTGTTTGTCATCTGAAGT+CGG | + | chr3.2:79040991-79041010 | None:intergenic | 40.0% |
| !! | ACTAGGAATTTTGGTAGCCA+TGG | - | chr3.2:79041413-79041432 | MS.gene06507:intron | 40.0% |
| !! | ATGTTTTCAGGCAAGAGAAG+GGG | - | chr3.2:79041607-79041626 | MS.gene06507:CDS | 40.0% |
| !! | CAATGTTTTCAGGCAAGAGA+AGG | - | chr3.2:79041605-79041624 | MS.gene06507:CDS | 40.0% |
| !! | GAATTTTGGTAGCCATGGTT+GGG | - | chr3.2:79041418-79041437 | MS.gene06507:intron | 40.0% |
| !! | GGCAAAGAGTGCTTACATAT+AGG | - | chr3.2:79039655-79039674 | MS.gene06507:intron | 40.0% |
| !! | GTTGATAACCGGACCATATT+TGG | - | chr3.2:79041081-79041100 | MS.gene06507:intron | 40.0% |
| !!! | ACATGTCTTGTACTGGCTTT+TGG | - | chr3.2:79041351-79041370 | MS.gene06507:intron | 40.0% |
| AACAAGGTTGCTGCCTGATA+TGG | + | chr3.2:79041064-79041083 | None:intergenic | 45.0% | |
| AACTGCAGCACAAGCATTAC+AGG | - | chr3.2:79041494-79041513 | MS.gene06507:intron | 45.0% | |
| ACATGCAGTAACAGTCACCA+CGG | + | chr3.2:79038227-79038246 | None:intergenic | 45.0% | |
| ATCACCGCTTTCTGCTCAAA+AGG | + | chr3.2:79039194-79039213 | None:intergenic | 45.0% | |
| ATCTGATCCCCTCATTAACG+TGG | - | chr3.2:79041631-79041650 | MS.gene06507:CDS | 45.0% | |
| CCCCTCATTAACGTGGAAAA+TGG | - | chr3.2:79041638-79041657 | MS.gene06507:CDS | 45.0% | |
| TGCTTACATATAGGGACGGA+TGG | - | chr3.2:79039664-79039683 | MS.gene06507:intron | 45.0% | |
| TTTGAGCAGAAAGCGGTGAT+GGG | - | chr3.2:79039194-79039213 | MS.gene06507:intron | 45.0% | |
| ! | AAGATGTCCAAGGACTTGGT+AGG | + | chr3.2:79041328-79041347 | None:intergenic | 45.0% |
| ! | CAAGCCTTTTGAGCAGAAAG+CGG | - | chr3.2:79039187-79039206 | MS.gene06507:intron | 45.0% |
| ! | TTTTGAGCAGAAAGCGGTGA+TGG | - | chr3.2:79039193-79039212 | MS.gene06507:intron | 45.0% |
| !! | AGGAGTATCGAGATGCTTAC+TGG | - | chr3.2:79038411-79038430 | MS.gene06507:CDS | 45.0% |
| !! | GCAATCCTACTTTTGGGTGT+TGG | - | chr3.2:79040352-79040371 | MS.gene06507:intron | 45.0% |
| !! | GCAGCAACCTTGTTGATAAC+CGG | - | chr3.2:79041070-79041089 | MS.gene06507:intron | 45.0% |
| !! | GGAATTTTGGTAGCCATGGT+TGG | - | chr3.2:79041417-79041436 | MS.gene06507:intron | 45.0% |
| !! | AAAAATACAAAATATTAAAA+AGG | - | chr3.2:79040242-79040261 | MS.gene06507:intron | 5.0% |
| !! | TACAATATATTAAATTATTA+AGG | - | chr3.2:79040141-79040160 | MS.gene06507:intron | 5.0% |
| CCAGTTACCTACCAAGTCCT+TGG | - | chr3.2:79041318-79041337 | MS.gene06507:intron | 50.0% | |
| CGGTGCACTAAGTCTATCTG+TGG | - | chr3.2:79038055-79038074 | MS.gene06507:CDS | 50.0% | |
| GGAGGAAGCCTTAACTACGT+AGG | + | chr3.2:79039027-79039046 | None:intergenic | 50.0% | |
| TGAACAAGAGGCCCCCTATT+TGG | - | chr3.2:79041672-79041691 | MS.gene06507:CDS | 50.0% | |
| ! | CCAAGGACTTGGTAGGTAAC+TGG | + | chr3.2:79041321-79041340 | None:intergenic | 50.0% |
| ! | GAGGCCCCCTATTTGGAATA+AGG | - | chr3.2:79041679-79041698 | MS.gene06507:CDS | 50.0% |
| ! | GTGCACCGATAGTTCCCAAT+TGG | + | chr3.2:79038043-79038062 | None:intergenic | 50.0% |
| !! | CAGAAAGCGGTGATGGGATT+TGG | - | chr3.2:79039200-79039219 | MS.gene06507:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 79038020 | 79041712 | 79038020 | ID=MS.gene06507 |
| chr3.2 | mRNA | 79038020 | 79041712 | 79038020 | ID=MS.gene06507.t1;Parent=MS.gene06507 |
| chr3.2 | exon | 79041592 | 79041712 | 79041592 | ID=MS.gene06507.t1.exon1;Parent=MS.gene06507.t1 |
| chr3.2 | CDS | 79041592 | 79041712 | 79041592 | ID=cds.MS.gene06507.t1;Parent=MS.gene06507.t1 |
| chr3.2 | exon | 79040440 | 79040624 | 79040440 | ID=MS.gene06507.t1.exon2;Parent=MS.gene06507.t1 |
| chr3.2 | CDS | 79040440 | 79040624 | 79040440 | ID=cds.MS.gene06507.t1;Parent=MS.gene06507.t1 |
| chr3.2 | exon | 79040269 | 79040336 | 79040269 | ID=MS.gene06507.t1.exon3;Parent=MS.gene06507.t1 |
| chr3.2 | CDS | 79040269 | 79040336 | 79040269 | ID=cds.MS.gene06507.t1;Parent=MS.gene06507.t1 |
| chr3.2 | exon | 79039270 | 79039402 | 79039270 | ID=MS.gene06507.t1.exon4;Parent=MS.gene06507.t1 |
| chr3.2 | CDS | 79039270 | 79039402 | 79039270 | ID=cds.MS.gene06507.t1;Parent=MS.gene06507.t1 |
| chr3.2 | exon | 79038573 | 79038734 | 79038573 | ID=MS.gene06507.t1.exon5;Parent=MS.gene06507.t1 |
| chr3.2 | CDS | 79038573 | 79038734 | 79038573 | ID=cds.MS.gene06507.t1;Parent=MS.gene06507.t1 |
| chr3.2 | exon | 79038217 | 79038489 | 79038217 | ID=MS.gene06507.t1.exon6;Parent=MS.gene06507.t1 |
| chr3.2 | CDS | 79038217 | 79038489 | 79038217 | ID=cds.MS.gene06507.t1;Parent=MS.gene06507.t1 |
| chr3.2 | exon | 79038020 | 79038115 | 79038020 | ID=MS.gene06507.t1.exon7;Parent=MS.gene06507.t1 |
| chr3.2 | CDS | 79038020 | 79038115 | 79038020 | ID=cds.MS.gene06507.t1;Parent=MS.gene06507.t1 |
| Gene Sequence |
| Protein sequence |
