Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065464.t1 | XP_003608861.1 | 88.2 | 432 | 38 | 4 | 1 | 424 | 47 | 473 | 1.70E-194 | 688.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065464.t1 | O00567 | 57.2 | 388 | 158 | 3 | 1 | 385 | 48 | 430 | 7.8e-116 | 418.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065464.t1 | B7FLU4 | 88.2 | 432 | 38 | 4 | 1 | 424 | 47 | 473 | 1.2e-194 | 688.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049441 | MS.gene065464 | 0.809549 | 1.79E-50 | -1.69E-46 |
| MS.gene050427 | MS.gene065464 | 0.801293 | 9.64E-49 | -1.69E-46 |
| MS.gene052717 | MS.gene065464 | 0.801769 | 7.70E-49 | -1.69E-46 |
| MS.gene053007 | MS.gene065464 | 0.802807 | 4.71E-49 | -1.69E-46 |
| MS.gene053122 | MS.gene065464 | 0.818412 | 1.99E-52 | -1.69E-46 |
| MS.gene05689 | MS.gene065464 | 0.853386 | 2.47E-61 | -1.69E-46 |
| MS.gene058030 | MS.gene065464 | 0.810525 | 1.10E-50 | -1.69E-46 |
| MS.gene059935 | MS.gene065464 | 0.800034 | 1.74E-48 | -1.69E-46 |
| MS.gene060429 | MS.gene065464 | 0.814761 | 1.31E-51 | -1.69E-46 |
| MS.gene060830 | MS.gene065464 | 0.83741 | 5.28E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065464.t1 | MTR_4g103790 | 88.426 | 432 | 37 | 4 | 1 | 424 | 47 | 473 | 0.0 | 734 |
| MS.gene065464.t1 | MTR_5g010260 | 44.083 | 338 | 181 | 4 | 1 | 337 | 44 | 374 | 6.27e-86 | 273 |
| MS.gene065464.t1 | MTR_4g070910 | 37.978 | 445 | 213 | 11 | 1 | 400 | 44 | 470 | 1.10e-78 | 253 |
| MS.gene065464.t1 | MTR_7g037560 | 28.378 | 222 | 150 | 3 | 139 | 358 | 56 | 270 | 1.81e-17 | 84.3 |
| MS.gene065464.t1 | MTR_7g037560 | 28.378 | 222 | 150 | 3 | 139 | 358 | 117 | 331 | 2.65e-17 | 84.3 |
| MS.gene065464.t1 | MTR_6g069570 | 59.420 | 69 | 24 | 2 | 292 | 360 | 125 | 189 | 1.24e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065464.t1 | AT3G12860 | 72.544 | 397 | 97 | 3 | 1 | 390 | 47 | 438 | 0.0 | 582 |
| MS.gene065464.t1 | AT1G56110 | 71.646 | 395 | 100 | 3 | 1 | 388 | 47 | 436 | 0.0 | 582 |
| MS.gene065464.t1 | AT3G05060 | 42.564 | 390 | 213 | 7 | 1 | 389 | 45 | 424 | 5.65e-91 | 285 |
| MS.gene065464.t1 | AT5G27120 | 45.994 | 337 | 176 | 5 | 1 | 337 | 44 | 374 | 1.45e-90 | 284 |
| MS.gene065464.t1 | AT5G27140 | 37.669 | 369 | 213 | 6 | 43 | 408 | 57 | 411 | 8.66e-66 | 217 |
| MS.gene065464.t1 | AT5G27140 | 37.398 | 369 | 212 | 7 | 43 | 408 | 57 | 409 | 2.98e-63 | 210 |
| MS.gene065464.t1 | AT1G60170 | 28.986 | 138 | 97 | 1 | 220 | 357 | 194 | 330 | 1.19e-14 | 76.3 |
Find 83 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCATTCGGCCTTTGTTTC+TGG | 0.004964 | 8.3:+18626108 | None:intergenic |
| TCTTCAACTCTTCAGATTCT+TGG | 0.176244 | 8.3:-18626401 | MS.gene065464:CDS |
| CCAACTAGCGACTGCAAATT+TGG | 0.193971 | 8.3:+18626488 | None:intergenic |
| CTTTCAAGAGCAGAGGTAAA+AGG | 0.230717 | 8.3:+18628340 | None:intergenic |
| TTCTTACCTTCCTTAACTTT+AGG | 0.280668 | 8.3:+18627581 | None:intergenic |
| TTTACAATCTTCACAAGTTC+AGG | 0.281626 | 8.3:+18626853 | None:intergenic |
| GCCATTCGGCCTTTGTTTCT+GGG | 0.301796 | 8.3:+18626109 | None:intergenic |
| TGTAAACCGGGTTGACAATA+TGG | 0.341142 | 8.3:-18627241 | MS.gene065464:CDS |
| CGATGAGCTGAGGACTGTTT+TGG | 0.344431 | 8.3:-18627616 | MS.gene065464:intron |
| AATTCAATAGCAAGGTGATT+TGG | 0.344786 | 8.3:-18627320 | MS.gene065464:intron |
| TGATGGACCTATCTGATTAC+AGG | 0.375490 | 8.3:-18626556 | MS.gene065464:CDS |
| CACAAACTCGTTACTTTGAC+TGG | 0.379454 | 8.3:+18627491 | None:intergenic |
| TGGAATATAAGACCATATTT+AGG | 0.383737 | 8.3:+18626160 | None:intergenic |
| TATTATACCCATTGACGCTT+TGG | 0.385876 | 8.3:+18626702 | None:intergenic |
| GTGCAGAGAAGGCTTTGTTC+AGG | 0.401730 | 8.3:-18626379 | MS.gene065464:intron |
| TCTGCAAACAAATGCTCAAT+TGG | 0.405828 | 8.3:-18626080 | MS.gene065464:CDS |
| TCACTCTTTGTGCAAACATA+TGG | 0.406698 | 8.3:+18626576 | None:intergenic |
| CCTTCTCGATACACTTGATA+AGG | 0.408230 | 8.3:-18627202 | MS.gene065464:CDS |
| AGGTTAAGTTCAATGTAAAC+CGG | 0.411525 | 8.3:-18627254 | MS.gene065464:CDS |
| TGTGCAGAGAGTGGTATTCA+TGG | 0.424908 | 8.3:-18626882 | MS.gene065464:intron |
| AACTGTTGCAGATACAGAAA+TGG | 0.437507 | 8.3:-18625578 | MS.gene065464:intron |
| ATCGCCAACCAAGTCAGTTA+AGG | 0.438260 | 8.3:+18626756 | None:intergenic |
| CAAAGTTGCAAAATTTATTG+AGG | 0.438799 | 8.3:-18626812 | MS.gene065464:CDS |
| CGAACTTATTCGTGGTGGTC+AGG | 0.440913 | 8.3:-18627466 | MS.gene065464:CDS |
| GCTATTGAAAGTGTTGATAA+AGG | 0.441860 | 8.3:-18625839 | MS.gene065464:intron |
| TTTCAAGAGCAGAGGTAAAA+GGG | 0.450795 | 8.3:+18628341 | None:intergenic |
| AGAGGCAACACTCCTAAATA+TGG | 0.455113 | 8.3:-18626172 | MS.gene065464:CDS |
| CCAAATTTGCAGTCGCTAGT+TGG | 0.461168 | 8.3:-18626488 | MS.gene065464:CDS |
| AGAAGCCGCCAAAGCGTCAA+TGG | 0.463280 | 8.3:-18626710 | MS.gene065464:CDS |
| ACTCAACTTACCTAAAGTTA+AGG | 0.463424 | 8.3:-18627591 | MS.gene065464:CDS |
| ATTCATTCGCCATGAGAGTC+AGG | 0.465984 | 8.3:-18627173 | MS.gene065464:intron |
| TATTGAGGATAAGTCTAAGT+TGG | 0.472777 | 8.3:-18626797 | MS.gene065464:CDS |
| AAGAAGGCAAAGTTCAGCTT+AGG | 0.488720 | 8.3:-18627563 | MS.gene065464:CDS |
| TCAGATTCTTGGTGCAGAGA+AGG | 0.492010 | 8.3:-18626390 | MS.gene065464:CDS |
| TATACCCATTGACGCTTTGG+CGG | 0.501050 | 8.3:+18626705 | None:intergenic |
| AATTGAAGCCTTAACTGACT+TGG | 0.503464 | 8.3:-18626764 | MS.gene065464:CDS |
| TAAAGTTAAGGAAGGTAAGA+AGG | 0.510060 | 8.3:-18627579 | MS.gene065464:CDS |
| TTTGCAGATAGCGAGCCATT+CGG | 0.511659 | 8.3:+18626095 | None:intergenic |
| AAGAATCTGAAGAGTTGAAG+AGG | 0.512414 | 8.3:+18626403 | None:intergenic |
| CAAATCAACGCCGTTTCTGA+AGG | 0.515356 | 8.3:-18628310 | MS.gene065464:intron |
| GAGTTTATTACCTTCAGAAA+CGG | 0.525796 | 8.3:+18628300 | None:intergenic |
| AAGGCTGCAGAAATTACAAA+TGG | 0.539269 | 8.3:-18625478 | MS.gene065464:CDS |
| TTACTATACAGGAAACAAAC+CGG | 0.549205 | 8.3:+18626036 | None:intergenic |
| CCTTAGCTCTGCTGTAACTG+TGG | 0.549456 | 8.3:+18627274 | None:intergenic |
| CCACAGTTACAGCAGAGCTA+AGG | 0.551161 | 8.3:-18627274 | MS.gene065464:CDS |
| ACAAGTTTGTTGTGATCTCA+AGG | 0.553522 | 8.3:-18627433 | MS.gene065464:intron |
| GAAGCCGCCAAAGCGTCAAT+GGG | 0.554490 | 8.3:-18626709 | MS.gene065464:intron |
| GAAGCCTTAACTGACTTGGT+TGG | 0.554526 | 8.3:-18626760 | MS.gene065464:CDS |
| TTCGAGACTTTCAAGAGCAG+AGG | 0.555968 | 8.3:+18628333 | None:intergenic |
| ACCTTCTCCTGTAATCAGAT+AGG | 0.563907 | 8.3:+18626549 | None:intergenic |
| GTCGCTCTTCAACTTGCTCA+CGG | 0.564026 | 8.3:+18625918 | None:intergenic |
| AGATGACATGGCTGTAGATA+AGG | 0.568881 | 8.3:-18625497 | MS.gene065464:CDS |
| GCCCAGAAACAAAGGCCGAA+TGG | 0.570789 | 8.3:-18626110 | MS.gene065464:CDS |
| ACCTATCTGATTACAGGAGA+AGG | 0.571797 | 8.3:-18626550 | MS.gene065464:CDS |
| AGAATCTGAAGAGTTGAAGA+GGG | 0.574880 | 8.3:+18626404 | None:intergenic |
| TGGACATTGATCAAGTCCAC+AGG | 0.578477 | 8.3:+18626596 | None:intergenic |
| ATTTGGAGAAGGCCACAGCT+TGG | 0.580337 | 8.3:-18627303 | MS.gene065464:CDS |
| CCTATAGTACCTGACTCTCA+TGG | 0.583501 | 8.3:+18627164 | None:intergenic |
| CTCGACCAATAAAAGAAGAG+TGG | 0.586538 | 8.3:+18626140 | None:intergenic |
| ATAGCAAGGTGATTTGGAGA+AGG | 0.597287 | 8.3:-18627314 | MS.gene065464:intron |
| ATTTGTGAGACTACCAGCAT+GGG | 0.598797 | 8.3:+18626439 | None:intergenic |
| TCGCTAGTTGGTGATAGTGT+TGG | 0.600802 | 8.3:-18626476 | MS.gene065464:CDS |
| GGTTAAGTTCAATGTAAACC+GGG | 0.602722 | 8.3:-18627253 | MS.gene065464:CDS |
| GCATCTCTGCCCAGAAACAA+AGG | 0.603717 | 8.3:-18626118 | MS.gene065464:CDS |
| TTTGTGTGCGAACTTATTCG+TGG | 0.604563 | 8.3:-18627474 | MS.gene065464:CDS |
| TATGTTTGCACAAAGAGTGA+TGG | 0.605742 | 8.3:-18626573 | MS.gene065464:CDS |
| GAATGACCATATTGTCAACC+CGG | 0.609844 | 8.3:+18627235 | None:intergenic |
| AGGACAAGATTTGTCCCCTG+TGG | 0.610718 | 8.3:-18626612 | MS.gene065464:CDS |
| GGTGTAGCAGAGTCTAAGAT+CGG | 0.612323 | 8.3:-18627542 | MS.gene065464:CDS |
| CCTTATCAAGTGTATCGAGA+AGG | 0.614254 | 8.3:+18627202 | None:intergenic |
| GTGTGCGAACTTATTCGTGG+TGG | 0.621350 | 8.3:-18627471 | MS.gene065464:CDS |
| TGACATCAATGTTCTTACGA+GGG | 0.630630 | 8.3:+18625870 | None:intergenic |
| AATTTGTGAGACTACCAGCA+TGG | 0.634495 | 8.3:+18626438 | None:intergenic |
| GCTCGTTTGATATCCCATGC+TGG | 0.639782 | 8.3:-18626452 | MS.gene065464:CDS |
| AGCTGCAGATGGAGATGACA+TGG | 0.642008 | 8.3:-18625509 | MS.gene065464:CDS |
| AACTTACCTAAAGTTAAGGA+AGG | 0.645388 | 8.3:-18627587 | MS.gene065464:CDS |
| ATGACATCAATGTTCTTACG+AGG | 0.650333 | 8.3:+18625869 | None:intergenic |
| GACATCAATGTTCTTACGAG+GGG | 0.656258 | 8.3:+18625871 | None:intergenic |
| TGGCGATGAAGATAAAGCAA+AGG | 0.665007 | 8.3:-18626740 | MS.gene065464:CDS |
| GGACATTGATCAAGTCCACA+GGG | 0.677216 | 8.3:+18626597 | None:intergenic |
| GAATCTGAAGAGTTGAAGAG+GGG | 0.696575 | 8.3:+18626405 | None:intergenic |
| CTGTGGCAAAGACCAAGCTG+TGG | 0.696969 | 8.3:+18627291 | None:intergenic |
| GACATTGATCAAGTCCACAG+GGG | 0.785794 | 8.3:+18626598 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAGGATTATTTATCTAT+TGG | - | chr8.3:18626913-18626932 | MS.gene065464:intron | 15.0% |
| !! | TTTGAAGAAATATATATCTT+GGG | - | chr8.3:18625944-18625963 | MS.gene065464:CDS | 15.0% |
| !!! | ATAAAAATGACTTTTTTCAA+TGG | - | chr8.3:18625889-18625908 | MS.gene065464:CDS | 15.0% |
| !!! | TTTTGAAGAAATATATATCT+TGG | - | chr8.3:18625943-18625962 | MS.gene065464:CDS | 15.0% |
| !! | AAAAAAATACAGGTCAAAAT+GGG | + | chr8.3:18626471-18626490 | None:intergenic | 20.0% |
| !! | AAACCTAAAATTAAACATCA+AGG | + | chr8.3:18627488-18627507 | None:intergenic | 20.0% |
| !! | GAAAAGAAACAAAAAAATAC+AGG | + | chr8.3:18626481-18626500 | None:intergenic | 20.0% |
| !! | GATAGATAAAATTACTATAC+AGG | + | chr8.3:18627807-18627826 | None:intergenic | 20.0% |
| !! | TATAATTTATGTAGTGCATT+AGG | + | chr8.3:18628209-18628228 | None:intergenic | 20.0% |
| !! | TATGAATCTGTTATGTAATA+GGG | - | chr8.3:18625580-18625599 | MS.gene065464:intron | 20.0% |
| !!! | CAAGAAATAGATATTTGTTA+AGG | - | chr8.3:18626058-18626077 | MS.gene065464:CDS | 20.0% |
| ! | AGTAGTAAACAAACAGAAAT+AGG | + | chr8.3:18625868-18625887 | None:intergenic | 25.0% |
| ! | ATAGGGGTTATTTATTTAAC+TGG | - | chr8.3:18625597-18625616 | MS.gene065464:intron | 25.0% |
| ! | ATGAATCTGTTATGTAATAG+GGG | - | chr8.3:18625581-18625600 | MS.gene065464:intron | 25.0% |
| ! | CAAAAAAATACAGGTCAAAA+TGG | + | chr8.3:18626472-18626491 | None:intergenic | 25.0% |
| ! | CAAAGTTGCAAAATTTATTG+AGG | - | chr8.3:18627017-18627036 | MS.gene065464:intron | 25.0% |
| ! | CTTACTATGTTAACATCATA+TGG | - | chr8.3:18626857-18626876 | MS.gene065464:CDS | 25.0% |
| ! | GTATGAATCTGTTATGTAAT+AGG | - | chr8.3:18625579-18625598 | MS.gene065464:intron | 25.0% |
| ! | GTTATTTATTTAACTGGTAC+TGG | - | chr8.3:18625603-18625622 | MS.gene065464:intron | 25.0% |
| ! | TCAGCTAAAAAAAGATTATG+TGG | - | chr8.3:18625828-18625847 | MS.gene065464:intron | 25.0% |
| ! | TGGAATATAAGACCATATTT+AGG | + | chr8.3:18627672-18627691 | None:intergenic | 25.0% |
| !! | AATGTTGTTTATGAAGCTTT+AGG | - | chr8.3:18625705-18625724 | MS.gene065464:intron | 25.0% |
| !! | ATATTCCACTCTTCTTTTAT+TGG | - | chr8.3:18627684-18627703 | MS.gene065464:intron | 25.0% |
| !! | TTTTTCTCATAGCATGAATT+TGG | - | chr8.3:18628050-18628069 | MS.gene065464:intron | 25.0% |
| !!! | AAAATCGACTCTAAAATGAA+AGG | + | chr8.3:18625988-18626007 | None:intergenic | 25.0% |
| !!! | ATTATCACCTTTGTCATTTT+TGG | + | chr8.3:18626031-18626050 | None:intergenic | 25.0% |
| !!! | TCTTAAGTTGTTTTGTTTGT+TGG | - | chr8.3:18626167-18626186 | MS.gene065464:CDS | 25.0% |
| !!! | TGTCCTTGATGTTTAATTTT+AGG | - | chr8.3:18627482-18627501 | MS.gene065464:CDS | 25.0% |
| !!! | TTATCACCTTTGTCATTTTT+GGG | + | chr8.3:18626030-18626049 | None:intergenic | 25.0% |
| AACTTACCTAAAGTTAAGGA+AGG | - | chr8.3:18626242-18626261 | MS.gene065464:intron | 30.0% | |
| AATTCAATAGCAAGGTGATT+TGG | - | chr8.3:18626509-18626528 | MS.gene065464:CDS | 30.0% | |
| ACTCAACTTACCTAAAGTTA+AGG | - | chr8.3:18626238-18626257 | MS.gene065464:intron | 30.0% | |
| AGGTTAAGTTCAATGTAAAC+CGG | - | chr8.3:18626575-18626594 | MS.gene065464:CDS | 30.0% | |
| ATGCTATGAGAAAAATGAGA+TGG | + | chr8.3:18628045-18628064 | None:intergenic | 30.0% | |
| CATATAGCATCACCAAAAAA+TGG | + | chr8.3:18628126-18628145 | None:intergenic | 30.0% | |
| GACAAGTGACTGTTATTATT+GGG | - | chr8.3:18627574-18627593 | MS.gene065464:CDS | 30.0% | |
| GAGTTTATTACCTTCAGAAA+CGG | + | chr8.3:18625532-18625551 | None:intergenic | 30.0% | |
| TAAAGTTAAGGAAGGTAAGA+AGG | - | chr8.3:18626250-18626269 | MS.gene065464:intron | 30.0% | |
| TATTGAGGATAAGTCTAAGT+TGG | - | chr8.3:18627032-18627051 | MS.gene065464:intron | 30.0% | |
| TCAGAGAGCTATAAACTTAT+AGG | - | chr8.3:18626897-18626916 | MS.gene065464:intron | 30.0% | |
| TGCATTTGAATTCAATAGCA+AGG | - | chr8.3:18626501-18626520 | MS.gene065464:CDS | 30.0% | |
| TTACTATACAGGAAACAAAC+CGG | + | chr8.3:18627796-18627815 | None:intergenic | 30.0% | |
| TTCTTACCTTCCTTAACTTT+AGG | + | chr8.3:18626251-18626270 | None:intergenic | 30.0% | |
| TTTACAATCTTCACAAGTTC+AGG | + | chr8.3:18626979-18626998 | None:intergenic | 30.0% | |
| ! | CGACTTGACTTTTATGATAA+GGG | - | chr8.3:18627930-18627949 | MS.gene065464:intron | 30.0% |
| ! | TTTCGATATGCTATGTTTTG+AGG | - | chr8.3:18626112-18626131 | MS.gene065464:CDS | 30.0% |
| !! | GAAAGTGTTGATAAAGGTAA+GGG | - | chr8.3:18627996-18628015 | MS.gene065464:intron | 30.0% |
| !! | GCTATTGAAAGTGTTGATAA+AGG | - | chr8.3:18627990-18628009 | MS.gene065464:intron | 30.0% |
| !! | TCAAGAATAGATTGCTTTTC+CGG | - | chr8.3:18627774-18627793 | MS.gene065464:intron | 30.0% |
| !! | TGAAAGTGTTGATAAAGGTA+AGG | - | chr8.3:18627995-18628014 | MS.gene065464:intron | 30.0% |
| !! | TTAGTTTGTTTCAGTATGCA+TGG | - | chr8.3:18625760-18625779 | MS.gene065464:intron | 30.0% |
| !! | TTCGATATGCTATGTTTTGA+GGG | - | chr8.3:18626113-18626132 | MS.gene065464:CDS | 30.0% |
| !!! | CATTTTTTGGTGATGCTATA+TGG | - | chr8.3:18628124-18628143 | MS.gene065464:intron | 30.0% |
| !!! | CTTTTTTCGTGCTTTATTCA+GGG | - | chr8.3:18627623-18627642 | MS.gene065464:intron | 30.0% |
| !!! | TAAGTTGTTTTGTTTGTTGG+TGG | - | chr8.3:18626170-18626189 | MS.gene065464:CDS | 30.0% |
| !!! | TCATTTTTGGGTGTTTGTTT+AGG | + | chr8.3:18626018-18626037 | None:intergenic | 30.0% |
| !!! | TCTTTTTTCGTGCTTTATTC+AGG | - | chr8.3:18627622-18627641 | MS.gene065464:intron | 30.0% |
| !!! | TTTTTTTCATAGAAACGAGC+AGG | - | chr8.3:18627518-18627537 | MS.gene065464:CDS | 30.0% |
| AACTGTTGCAGATACAGAAA+TGG | - | chr8.3:18628251-18628270 | MS.gene065464:intron | 35.0% | |
| AAGAATCTGAAGAGTTGAAG+AGG | + | chr8.3:18627429-18627448 | None:intergenic | 35.0% | |
| AAGGCTGCAGAAATTACAAA+TGG | - | chr8.3:18628351-18628370 | MS.gene065464:CDS | 35.0% | |
| AATTGAAGCCTTAACTGACT+TGG | - | chr8.3:18627065-18627084 | MS.gene065464:intron | 35.0% | |
| AGAATCTGAAGAGTTGAAGA+GGG | + | chr8.3:18627428-18627447 | None:intergenic | 35.0% | |
| ATGACATCAATGTTCTTACG+AGG | + | chr8.3:18627963-18627982 | None:intergenic | 35.0% | |
| CAAACACCCAAAAATGACAA+AGG | - | chr8.3:18626021-18626040 | MS.gene065464:intron | 35.0% | |
| CCAACAAGTAAAAACACAAG+AGG | + | chr8.3:18626438-18626457 | None:intergenic | 35.0% | |
| CTATGAGAAAAATGAGATGG+AGG | + | chr8.3:18628042-18628061 | None:intergenic | 35.0% | |
| GGACAAGTGACTGTTATTAT+TGG | - | chr8.3:18627573-18627592 | MS.gene065464:CDS | 35.0% | |
| GGTTAAGTTCAATGTAAACC+GGG | - | chr8.3:18626576-18626595 | MS.gene065464:CDS | 35.0% | |
| TATGTTTGCACAAAGAGTGA+TGG | - | chr8.3:18627256-18627275 | MS.gene065464:CDS | 35.0% | |
| TATTATACCCATTGACGCTT+TGG | + | chr8.3:18627130-18627149 | None:intergenic | 35.0% | |
| TCACTCTTTGTGCAAACATA+TGG | + | chr8.3:18627256-18627275 | None:intergenic | 35.0% | |
| TCCTGAAAATAGAGAGACAA+AGG | + | chr8.3:18627201-18627220 | None:intergenic | 35.0% | |
| TCTGCAAACAAATGCTCAAT+TGG | - | chr8.3:18627749-18627768 | MS.gene065464:intron | 35.0% | |
| TCTTCAACTCTTCAGATTCT+TGG | - | chr8.3:18627428-18627447 | MS.gene065464:intron | 35.0% | |
| TGACATCAATGTTCTTACGA+GGG | + | chr8.3:18627962-18627981 | None:intergenic | 35.0% | |
| TTTCAAGAGCAGAGGTAAAA+GGG | + | chr8.3:18625491-18625510 | None:intergenic | 35.0% | |
| TTTGATGTGCTTTGCTTGTT+TGG | - | chr8.3:18626089-18626108 | MS.gene065464:CDS | 35.0% | |
| ! | AGCTTTTTGCTTCTTCTTCT+TGG | + | chr8.3:18628304-18628323 | None:intergenic | 35.0% |
| ! | CTCAAGGTTGGCATTTATTT+TGG | - | chr8.3:18626412-18626431 | MS.gene065464:CDS | 35.0% |
| ! | GAAACTGTTTGTGTTTTGTC+AGG | - | chr8.3:18627552-18627571 | MS.gene065464:CDS | 35.0% |
| ! | GCGACTTGACTTTTATGATA+AGG | - | chr8.3:18627929-18627948 | MS.gene065464:intron | 35.0% |
| ! | TAACATAGTAAGTGTTGCCT+GGG | + | chr8.3:18626849-18626868 | None:intergenic | 35.0% |
| ! | TATCAATTTTGTGCAGAGAG+TGG | - | chr8.3:18626938-18626957 | MS.gene065464:intron | 35.0% |
| ! | TCCTTTGTCTCTCTATTTTC+AGG | - | chr8.3:18627197-18627216 | MS.gene065464:CDS | 35.0% |
| ! | TTAACATAGTAAGTGTTGCC+TGG | + | chr8.3:18626850-18626869 | None:intergenic | 35.0% |
| !! | AAAAAGGGTACTTCAGCATT+TGG | - | chr8.3:18627879-18627898 | MS.gene065464:intron | 35.0% |
| !! | ACAAGTTTGTTGTGATCTCA+AGG | - | chr8.3:18626396-18626415 | MS.gene065464:CDS | 35.0% |
| !! | CCTCTTGTGTTTTTACTTGT+TGG | - | chr8.3:18626435-18626454 | MS.gene065464:CDS | 35.0% |
| !! | CTCTAAAATGAAAGGCTACT+AGG | + | chr8.3:18625980-18625999 | None:intergenic | 35.0% |
| !! | CTTCTTCTTCTTGGTTTTCT+TGG | + | chr8.3:18628295-18628314 | None:intergenic | 35.0% |
| !!! | TTTTTGGTGATGCTATATGG+TGG | - | chr8.3:18628127-18628146 | MS.gene065464:intron | 35.0% |
| AAAAATGAGATGGAGGCAGT+AGG | + | chr8.3:18628035-18628054 | None:intergenic | 40.0% | |
| AAGAAGCAAAAAGCTGCAGA+TGG | - | chr8.3:18628309-18628328 | MS.gene065464:intron | 40.0% | |
| AAGAAGGCAAAGTTCAGCTT+AGG | - | chr8.3:18626266-18626285 | MS.gene065464:intron | 40.0% | |
| AATTTGTGAGACTACCAGCA+TGG | + | chr8.3:18627394-18627413 | None:intergenic | 40.0% | |
| ACAGGTCAAAATGGGCAAAA+GGG | + | chr8.3:18626463-18626482 | None:intergenic | 40.0% | |
| ACCTATCTGATTACAGGAGA+AGG | - | chr8.3:18627279-18627298 | MS.gene065464:CDS | 40.0% | |
| ACCTTCTCCTGTAATCAGAT+AGG | + | chr8.3:18627283-18627302 | None:intergenic | 40.0% | |
| AGAGGCAACACTCCTAAATA+TGG | - | chr8.3:18627657-18627676 | MS.gene065464:intron | 40.0% | |
| AGATGACATGGCTGTAGATA+AGG | - | chr8.3:18628332-18628351 | MS.gene065464:CDS | 40.0% | |
| ATTTGTGAGACTACCAGCAT+GGG | + | chr8.3:18627393-18627412 | None:intergenic | 40.0% | |
| CCTTATCAAGTGTATCGAGA+AGG | + | chr8.3:18626630-18626649 | None:intergenic | 40.0% | |
| CCTTCTCGATACACTTGATA+AGG | - | chr8.3:18626627-18626646 | MS.gene065464:intron | 40.0% | |
| CTCGACCAATAAAAGAAGAG+TGG | + | chr8.3:18627692-18627711 | None:intergenic | 40.0% | |
| CTTTCAAGAGCAGAGGTAAA+AGG | + | chr8.3:18625492-18625511 | None:intergenic | 40.0% | |
| GAATCTGAAGAGTTGAAGAG+GGG | + | chr8.3:18627427-18627446 | None:intergenic | 40.0% | |
| GAATGACCATATTGTCAACC+CGG | + | chr8.3:18626597-18626616 | None:intergenic | 40.0% | |
| GACATCAATGTTCTTACGAG+GGG | + | chr8.3:18627961-18627980 | None:intergenic | 40.0% | |
| TACAGGTCAAAATGGGCAAA+AGG | + | chr8.3:18626464-18626483 | None:intergenic | 40.0% | |
| TGGCGATGAAGATAAAGCAA+AGG | - | chr8.3:18627089-18627108 | MS.gene065464:intron | 40.0% | |
| TGGTGTGTTCTGCAGAAAAA+GGG | - | chr8.3:18627864-18627883 | MS.gene065464:intron | 40.0% | |
| TTGGTGTGTTCTGCAGAAAA+AGG | - | chr8.3:18627863-18627882 | MS.gene065464:intron | 40.0% | |
| TTTGTGTGCGAACTTATTCG+TGG | - | chr8.3:18626355-18626374 | MS.gene065464:intron | 40.0% | |
| ! | AGTGGGAGATTGTGATTTGT+GGG | - | chr8.3:18626797-18626816 | MS.gene065464:CDS | 40.0% |
| ! | ATAGCAAGGTGATTTGGAGA+AGG | - | chr8.3:18626515-18626534 | MS.gene065464:CDS | 40.0% |
| ! | CACAAACTCGTTACTTTGAC+TGG | + | chr8.3:18626341-18626360 | None:intergenic | 40.0% |
| ! | TGATGGACCTATCTGATTAC+AGG | - | chr8.3:18627273-18627292 | MS.gene065464:CDS | 40.0% |
| ! | TGTAAACCGGGTTGACAATA+TGG | - | chr8.3:18626588-18626607 | MS.gene065464:CDS | 40.0% |
| ! | TTCAGGGCATTAAAAACGAG+AGG | - | chr8.3:18627639-18627658 | MS.gene065464:intron | 40.0% |
| !! | GTTTGTTGTGATCTCAAGGT+TGG | - | chr8.3:18626400-18626419 | MS.gene065464:CDS | 40.0% |
| !! | TGGGGGTCTTTTCCATTTTT+TGG | - | chr8.3:18628111-18628130 | MS.gene065464:intron | 40.0% |
| ATCGCCAACCAAGTCAGTTA+AGG | + | chr8.3:18627076-18627095 | None:intergenic | 45.0% | |
| ATTCATTCGCCATGAGAGTC+AGG | - | chr8.3:18626656-18626675 | MS.gene065464:intron | 45.0% | |
| ATTTCTGCCCTGCTACTACA+TGG | - | chr8.3:18628091-18628110 | MS.gene065464:intron | 45.0% | |
| CAAAACAGTCCTCAGCTCAT+CGG | + | chr8.3:18626215-18626234 | None:intergenic | 45.0% | |
| CAAATCAACGCCGTTTCTGA+AGG | - | chr8.3:18625519-18625538 | MS.gene065464:CDS | 45.0% | |
| CAACACACACACACAAACCA+GGG | - | chr8.3:18626774-18626793 | MS.gene065464:CDS | 45.0% | |
| CCAAATTTGCAGTCGCTAGT+TGG | - | chr8.3:18627341-18627360 | MS.gene065464:intron | 45.0% | |
| CCAACTAGCGACTGCAAATT+TGG | + | chr8.3:18627344-18627363 | None:intergenic | 45.0% | |
| CCATGAGAGTCAGGTACTAT+AGG | - | chr8.3:18626665-18626684 | MS.gene065464:intron | 45.0% | |
| CCTATAGTACCTGACTCTCA+TGG | + | chr8.3:18626668-18626687 | None:intergenic | 45.0% | |
| GACATTGATCAAGTCCACAG+GGG | + | chr8.3:18627234-18627253 | None:intergenic | 45.0% | |
| GAGTGGGAGATTGTGATTTG+TGG | - | chr8.3:18626796-18626815 | MS.gene065464:CDS | 45.0% | |
| GGACATTGATCAAGTCCACA+GGG | + | chr8.3:18627235-18627254 | None:intergenic | 45.0% | |
| GTATTATGACCGATGAGCTG+AGG | - | chr8.3:18626203-18626222 | MS.gene065464:intron | 45.0% | |
| TATACCCATTGACGCTTTGG+CGG | + | chr8.3:18627127-18627146 | None:intergenic | 45.0% | |
| TGGACATTGATCAAGTCCAC+AGG | + | chr8.3:18627236-18627255 | None:intergenic | 45.0% | |
| TGTGCAGAGAGTGGTATTCA+TGG | - | chr8.3:18626947-18626966 | MS.gene065464:intron | 45.0% | |
| TTCGAGACTTTCAAGAGCAG+AGG | + | chr8.3:18625499-18625518 | None:intergenic | 45.0% | |
| TTTCTGCCCTGCTACTACAT+GGG | - | chr8.3:18628092-18628111 | MS.gene065464:intron | 45.0% | |
| TTTGCAGATAGCGAGCCATT+CGG | + | chr8.3:18627737-18627756 | None:intergenic | 45.0% | |
| ! | CTGGTTTGTGTGTGTGTGTT+GGG | + | chr8.3:18626775-18626794 | None:intergenic | 45.0% |
| ! | GCGCATCTGAATCATGCTTT+TGG | - | chr8.3:18627844-18627863 | MS.gene065464:intron | 45.0% |
| ! | GGTGTAGCAGAGTCTAAGAT+CGG | - | chr8.3:18626287-18626306 | MS.gene065464:intron | 45.0% |
| ! | TCAGATTCTTGGTGCAGAGA+AGG | - | chr8.3:18627439-18627458 | MS.gene065464:CDS | 45.0% |
| ! | TGGTTTGTGTGTGTGTGTTG+GGG | + | chr8.3:18626774-18626793 | None:intergenic | 45.0% |
| !! | GAAGCCTTAACTGACTTGGT+TGG | - | chr8.3:18627069-18627088 | MS.gene065464:intron | 45.0% |
| !! | GTTTGTTGGTGGCGATGTAA+AGG | - | chr8.3:18626181-18626200 | MS.gene065464:CDS | 45.0% |
| !! | TCGCTAGTTGGTGATAGTGT+TGG | - | chr8.3:18627353-18627372 | MS.gene065464:intron | 45.0% |
| !! | TTCACATCTGCTTTTGCGCA+TGG | - | chr8.3:18626740-18626759 | MS.gene065464:CDS | 45.0% |
| AAAGACCCCCATGTAGTAGC+AGG | + | chr8.3:18628102-18628121 | None:intergenic | 50.0% | |
| AAGACCCCCATGTAGTAGCA+GGG | + | chr8.3:18628101-18628120 | None:intergenic | 50.0% | |
| AATCACAATCTCCCACTCCC+TGG | + | chr8.3:18626794-18626813 | None:intergenic | 50.0% | |
| ACACACACAAACCAGGGAGT+GGG | - | chr8.3:18626780-18626799 | MS.gene065464:CDS | 50.0% | |
| AGCTGCAGATGGAGATGACA+TGG | - | chr8.3:18628320-18628339 | MS.gene065464:CDS | 50.0% | |
| AGGACAAGATTTGTCCCCTG+TGG | - | chr8.3:18627217-18627236 | MS.gene065464:CDS | 50.0% | |
| ATGGAGGCAGTAGGTCTCAT+AGG | + | chr8.3:18628026-18628045 | None:intergenic | 50.0% | |
| ATTTGGAGAAGGCCACAGCT+TGG | - | chr8.3:18626526-18626545 | MS.gene065464:CDS | 50.0% | |
| CCAACACACACACACAAACC+AGG | - | chr8.3:18626773-18626792 | MS.gene065464:CDS | 50.0% | |
| CCACAGTTACAGCAGAGCTA+AGG | - | chr8.3:18626555-18626574 | MS.gene065464:CDS | 50.0% | |
| CGAACTTATTCGTGGTGGTC+AGG | - | chr8.3:18626363-18626382 | MS.gene065464:intron | 50.0% | |
| GCATCTCTGCCCAGAAACAA+AGG | - | chr8.3:18627711-18627730 | MS.gene065464:intron | 50.0% | |
| GCTCGTTTGATATCCCATGC+TGG | - | chr8.3:18627377-18627396 | MS.gene065464:intron | 50.0% | |
| GTGTGCGAACTTATTCGTGG+TGG | - | chr8.3:18626358-18626377 | MS.gene065464:intron | 50.0% | |
| TGATTCAGATGCGCAGCGTA+AGG | + | chr8.3:18627838-18627857 | None:intergenic | 50.0% | |
| TGGAGGCAGTAGGTCTCATA+GGG | + | chr8.3:18628025-18628044 | None:intergenic | 50.0% | |
| TTCTGCCCTGCTACTACATG+GGG | - | chr8.3:18628093-18628112 | MS.gene065464:intron | 50.0% | |
| ! | AGCCATTCGGCCTTTGTTTC+TGG | + | chr8.3:18627724-18627743 | None:intergenic | 50.0% |
| ! | CCTGGTTTGTGTGTGTGTGT+TGG | + | chr8.3:18626776-18626795 | None:intergenic | 50.0% |
| ! | CGATGAGCTGAGGACTGTTT+TGG | - | chr8.3:18626213-18626232 | MS.gene065464:intron | 50.0% |
| ! | GCCATTCGGCCTTTGTTTCT+GGG | + | chr8.3:18627723-18627742 | None:intergenic | 50.0% |
| ! | GTCGCTCTTCAACTTGCTCA+CGG | + | chr8.3:18627914-18627933 | None:intergenic | 50.0% |
| ! | TGCTTTTGCGCATGGTCTAC+TGG | - | chr8.3:18626748-18626767 | MS.gene065464:CDS | 50.0% |
| !! | CCTTAGCTCTGCTGTAACTG+TGG | + | chr8.3:18626558-18626577 | None:intergenic | 50.0% |
| !! | GTGCAGAGAAGGCTTTGTTC+AGG | - | chr8.3:18627450-18627469 | MS.gene065464:CDS | 50.0% |
| CACACACACAAACCAGGGAG+TGG | - | chr8.3:18626779-18626798 | MS.gene065464:CDS | 55.0% | |
| CTCAAGCACACAAGTGTCCC+AGG | - | chr8.3:18626829-18626848 | MS.gene065464:CDS | 55.0% | |
| CTGTGGCAAAGACCAAGCTG+TGG | + | chr8.3:18626541-18626560 | None:intergenic | 55.0% | |
| GCCCAGAAACAAAGGCCGAA+TGG | - | chr8.3:18627719-18627738 | MS.gene065464:intron | 55.0% | |
| GGGACACTTGTGTGCTTGAG+TGG | + | chr8.3:18626829-18626848 | None:intergenic | 55.0% | |
| TCTGCCCTGCTACTACATGG+GGG | - | chr8.3:18628094-18628113 | MS.gene065464:intron | 55.0% | |
| ! | AGAAGCCGCCAAAGCGTCAA+TGG | - | chr8.3:18627119-18627138 | MS.gene065464:intron | 55.0% |
| ! | GAAGCCGCCAAAGCGTCAAT+GGG | - | chr8.3:18627120-18627139 | MS.gene065464:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 18625474 | 18628377 | 18625474 | ID=MS.gene065464 |
| chr8.3 | mRNA | 18625474 | 18628377 | 18625474 | ID=MS.gene065464.t1;Parent=MS.gene065464 |
| chr8.3 | exon | 18628311 | 18628377 | 18628311 | ID=MS.gene065464.t1.exon1;Parent=MS.gene065464.t1 |
| chr8.3 | CDS | 18628311 | 18628377 | 18628311 | ID=cds.MS.gene065464.t1;Parent=MS.gene065464.t1 |
| chr8.3 | exon | 18627434 | 18627626 | 18627434 | ID=MS.gene065464.t1.exon2;Parent=MS.gene065464.t1 |
| chr8.3 | CDS | 18627434 | 18627626 | 18627434 | ID=cds.MS.gene065464.t1;Parent=MS.gene065464.t1 |
| chr8.3 | exon | 18627174 | 18627332 | 18627174 | ID=MS.gene065464.t1.exon3;Parent=MS.gene065464.t1 |
| chr8.3 | CDS | 18627174 | 18627332 | 18627174 | ID=cds.MS.gene065464.t1;Parent=MS.gene065464.t1 |
| chr8.3 | exon | 18626710 | 18626897 | 18626710 | ID=MS.gene065464.t1.exon4;Parent=MS.gene065464.t1 |
| chr8.3 | CDS | 18626710 | 18626897 | 18626710 | ID=cds.MS.gene065464.t1;Parent=MS.gene065464.t1 |
| chr8.3 | exon | 18626380 | 18626632 | 18626380 | ID=MS.gene065464.t1.exon5;Parent=MS.gene065464.t1 |
| chr8.3 | CDS | 18626380 | 18626632 | 18626380 | ID=cds.MS.gene065464.t1;Parent=MS.gene065464.t1 |
| chr8.3 | exon | 18626045 | 18626207 | 18626045 | ID=MS.gene065464.t1.exon6;Parent=MS.gene065464.t1 |
| chr8.3 | CDS | 18626045 | 18626207 | 18626045 | ID=cds.MS.gene065464.t1;Parent=MS.gene065464.t1 |
| chr8.3 | exon | 18625840 | 18625972 | 18625840 | ID=MS.gene065464.t1.exon7;Parent=MS.gene065464.t1 |
| chr8.3 | CDS | 18625840 | 18625972 | 18625840 | ID=cds.MS.gene065464.t1;Parent=MS.gene065464.t1 |
| chr8.3 | exon | 18625474 | 18625589 | 18625474 | ID=MS.gene065464.t1.exon8;Parent=MS.gene065464.t1 |
| chr8.3 | CDS | 18625474 | 18625589 | 18625474 | ID=cds.MS.gene065464.t1;Parent=MS.gene065464.t1 |
| Gene Sequence |
| Protein sequence |
