Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049441.t1 | XP_003602435.1 | 89.7 | 416 | 39 | 2 | 1 | 412 | 1 | 416 | 2.30E-156 | 562 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049441.t1 | Q9FLU1 | 73.9 | 138 | 32 | 3 | 229 | 365 | 272 | 406 | 9.7e-47 | 189.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049441.t1 | G7J9P4 | 89.7 | 416 | 39 | 2 | 1 | 412 | 1 | 416 | 1.7e-156 | 562.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049441 | MS.gene049824 | 0.829415 | 5.22E-55 | -1.69E-46 |
| MS.gene049441 | MS.gene049825 | 0.802722 | 4.90E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene053122 | 0.843095 | 1.73E-58 | -1.69E-46 |
| MS.gene049441 | MS.gene054967 | 0.812306 | 4.53E-51 | -1.69E-46 |
| MS.gene049441 | MS.gene055580 | -0.829883 | 4.01E-55 | -1.69E-46 |
| MS.gene049441 | MS.gene055808 | 0.804079 | 2.57E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene056043 | -0.807913 | 4.01E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene061811 | 0.806268 | 8.93E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene063452 | 0.81741 | 3.35E-52 | -1.69E-46 |
| MS.gene049441 | MS.gene064321 | 0.802441 | 5.60E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene065464 | 0.809549 | 1.79E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene06571 | 0.915738 | 4.12E-85 | -1.69E-46 |
| MS.gene049441 | MS.gene068159 | 0.800623 | 1.32E-48 | -1.69E-46 |
| MS.gene049441 | MS.gene071987 | 0.808887 | 2.48E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene073092 | 0.854229 | 1.41E-61 | -1.69E-46 |
| MS.gene049441 | MS.gene073300 | 0.80547 | 1.31E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene07374 | 0.806091 | 9.73E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene07393 | 0.822108 | 2.83E-53 | -1.69E-46 |
| MS.gene049441 | MS.gene074356 | 0.812798 | 3.54E-51 | -1.69E-46 |
| MS.gene049441 | MS.gene07719 | 0.84024 | 9.80E-58 | -1.69E-46 |
| MS.gene049441 | MS.gene20920 | 0.800745 | 1.25E-48 | -1.69E-46 |
| MS.gene049441 | MS.gene22255 | 0.8262 | 3.09E-54 | -1.69E-46 |
| MS.gene049441 | MS.gene22964 | 0.803931 | 2.75E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene23697 | 0.804335 | 2.27E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene24264 | 0.801944 | 7.09E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene25965 | 0.840817 | 6.92E-58 | -1.69E-46 |
| MS.gene049441 | MS.gene26380 | 0.80489 | 1.74E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene26976 | 0.811932 | 5.47E-51 | -1.69E-46 |
| MS.gene049441 | MS.gene27041 | 0.807528 | 4.84E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene27299 | 0.826315 | 2.90E-54 | -1.69E-46 |
| MS.gene049441 | MS.gene27646 | -0.807349 | 5.28E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene28387 | 0.804631 | 1.97E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene28652 | 0.802582 | 5.24E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene28852 | 0.804122 | 2.51E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene36265 | 0.802882 | 4.54E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene36496 | 0.801928 | 7.14E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene37029 | 0.803784 | 2.95E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene37656 | 0.807567 | 4.75E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene40160 | 0.83229 | 1.03E-55 | -1.69E-46 |
| MS.gene049441 | MS.gene40409 | 0.802228 | 6.20E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene41651 | 0.802365 | 5.81E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene42649 | 0.803882 | 2.82E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene42882 | 0.800258 | 1.57E-48 | -1.69E-46 |
| MS.gene049441 | MS.gene43087 | 0.820843 | 5.54E-53 | -1.69E-46 |
| MS.gene049441 | MS.gene43970 | 0.810548 | 1.09E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene46475 | 0.820883 | 5.42E-53 | -1.69E-46 |
| MS.gene049441 | MS.gene46997 | 0.829657 | 4.55E-55 | -1.69E-46 |
| MS.gene049441 | MS.gene48346 | 0.810567 | 1.08E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene48376 | 0.832602 | 8.61E-56 | -1.69E-46 |
| MS.gene049441 | MS.gene49714 | 0.803368 | 3.60E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene52941 | 0.833551 | 5.00E-56 | -1.69E-46 |
| MS.gene049441 | MS.gene55818 | 0.809746 | 1.63E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene56067 | 0.801498 | 8.75E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene58719 | 0.833634 | 4.76E-56 | -1.69E-46 |
| MS.gene049441 | MS.gene59146 | 0.812341 | 4.45E-51 | -1.69E-46 |
| MS.gene049441 | MS.gene59369 | 0.811838 | 5.73E-51 | -1.69E-46 |
| MS.gene049441 | MS.gene61267 | 0.806584 | 7.66E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene61739 | 0.84229 | 2.83E-58 | -1.69E-46 |
| MS.gene049441 | MS.gene62491 | 0.821027 | 5.02E-53 | -1.69E-46 |
| MS.gene049441 | MS.gene63988 | 0.816272 | 6.03E-52 | -1.69E-46 |
| MS.gene049441 | MS.gene65123 | 0.808713 | 2.70E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene65249 | 0.807034 | 6.16E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene68663 | 0.808426 | 3.12E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene69778 | 0.810339 | 1.21E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene70656 | 0.81849 | 1.91E-52 | -1.69E-46 |
| MS.gene049441 | MS.gene72367 | 0.834588 | 2.75E-56 | -1.69E-46 |
| MS.gene049441 | MS.gene74606 | 0.806816 | 6.85E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene75670 | 0.802131 | 6.49E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene76227 | 0.812966 | 3.25E-51 | -1.69E-46 |
| MS.gene049441 | MS.gene76314 | 0.818185 | 2.24E-52 | -1.69E-46 |
| MS.gene049441 | MS.gene77739 | 0.806466 | 8.11E-50 | -1.69E-46 |
| MS.gene049441 | MS.gene78222 | 0.844799 | 6.05E-59 | -1.69E-46 |
| MS.gene049441 | MS.gene91485 | 0.834038 | 3.78E-56 | -1.69E-46 |
| MS.gene049441 | MS.gene92059 | 0.827841 | 1.25E-54 | -1.69E-46 |
| MS.gene049441 | MS.gene93501 | 0.822086 | 2.86E-53 | -1.69E-46 |
| MS.gene049441 | MS.gene96338 | 0.802205 | 6.26E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene96762 | 0.80561 | 1.23E-49 | -1.69E-46 |
| MS.gene049441 | MS.gene99657 | 0.800111 | 1.68E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049441.t1 | MTR_3g093330 | 96.394 | 416 | 11 | 2 | 1 | 412 | 1 | 416 | 0.0 | 797 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049441.t1 | AT5G24630 | 59.804 | 204 | 70 | 5 | 208 | 409 | 242 | 435 | 1.67e-65 | 216 |
| MS.gene049441.t1 | AT5G24630 | 63.934 | 183 | 55 | 4 | 228 | 409 | 225 | 397 | 3.71e-65 | 214 |
| MS.gene049441.t1 | AT5G24630 | 63.934 | 183 | 55 | 4 | 228 | 409 | 225 | 397 | 3.71e-65 | 214 |
| MS.gene049441.t1 | AT5G24630 | 63.934 | 183 | 55 | 4 | 228 | 409 | 225 | 397 | 3.71e-65 | 214 |
| MS.gene049441.t1 | AT5G24630 | 63.934 | 183 | 55 | 4 | 228 | 409 | 261 | 433 | 7.63e-65 | 214 |
| MS.gene049441.t1 | AT5G24630 | 63.934 | 183 | 55 | 4 | 228 | 409 | 249 | 421 | 9.02e-65 | 214 |
| MS.gene049441.t1 | AT5G24630 | 63.934 | 183 | 55 | 4 | 228 | 409 | 265 | 437 | 1.11e-64 | 214 |
| MS.gene049441.t1 | AT5G24630 | 63.934 | 183 | 55 | 4 | 228 | 409 | 267 | 439 | 1.16e-64 | 214 |
| MS.gene049441.t1 | AT5G24630 | 63.934 | 183 | 55 | 4 | 228 | 409 | 267 | 439 | 1.16e-64 | 214 |
| MS.gene049441.t1 | AT5G24630 | 63.934 | 183 | 55 | 4 | 228 | 409 | 267 | 439 | 1.16e-64 | 214 |
| MS.gene049441.t1 | AT5G24630 | 63.934 | 183 | 55 | 4 | 228 | 409 | 268 | 440 | 1.19e-64 | 214 |
| MS.gene049441.t1 | AT5G24630 | 63.934 | 183 | 55 | 4 | 228 | 409 | 271 | 443 | 1.26e-64 | 214 |
Find 95 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCACTACCCTTGTTCTTAT+TGG | 0.135839 | 3.3:+77785230 | None:intergenic |
| GCTTTCTTCTTTGCTGTCTT+TGG | 0.190175 | 3.3:+77782391 | None:intergenic |
| GAAGACTGCACACCAGTAAA+AGG | 0.264190 | 3.3:-77784546 | MS.gene049441:CDS |
| CTTTCTTTGACTCATTTCTT+AGG | 0.266328 | 3.3:+77782346 | None:intergenic |
| CATAGATCTGAGTGGTGATA+TGG | 0.271690 | 3.3:-77783770 | MS.gene049441:CDS |
| GACAGTGTCACCGGCGAATT+AGG | 0.285567 | 3.3:+77785351 | None:intergenic |
| TTTCTTAGGCTTTGCCCTCT+TGG | 0.289065 | 3.3:+77782360 | None:intergenic |
| CGGAAAATCTCCATCCAAAA+AGG | 0.297047 | 3.3:-77784607 | MS.gene049441:CDS |
| TTATTGGCCTTAAGATTCTT+AGG | 0.303993 | 3.3:+77785246 | None:intergenic |
| AGATTGGTTGCGTTCTTATC+AGG | 0.332376 | 3.3:-77785518 | MS.gene049441:intron |
| TGTTTATGAAGCTGAAACTA+TGG | 0.348887 | 3.3:-77782833 | MS.gene049441:CDS |
| GGCTTTGCCCTCTTGGAACT+TGG | 0.354261 | 3.3:+77782367 | None:intergenic |
| CATATCACCACTCAGATCTA+TGG | 0.355840 | 3.3:+77783771 | None:intergenic |
| GAAACTAAACCTCAACCTTC+TGG | 0.374230 | 3.3:-77784654 | MS.gene049441:CDS |
| AGATTCCCCGTCCGGGGATC+AGG | 0.383118 | 3.3:-77783722 | MS.gene049441:CDS |
| TTTATGCTCTGCTTCCTTGT+CGG | 0.385678 | 3.3:+77784929 | None:intergenic |
| GTGTACAGTTTCTTTCTTGT+GGG | 0.388627 | 3.3:+77785147 | None:intergenic |
| TTAAGATTCTTAGGTGACTT+AGG | 0.394502 | 3.3:+77785255 | None:intergenic |
| ATTCTTACATTAGGTACAAC+AGG | 0.403661 | 3.3:+77784322 | None:intergenic |
| AAAACAAAGGTTAATGCAAA+GGG | 0.449941 | 3.3:-77784519 | MS.gene049441:CDS |
| ATTATCTCAGATTCCCCGTC+CGG | 0.450226 | 3.3:-77783730 | MS.gene049441:CDS |
| CCTCAACCTTCTGGTGAAGA+TGG | 0.453566 | 3.3:-77784645 | MS.gene049441:CDS |
| CAGCTCCCACATTGAATGAA+TGG | 0.455114 | 3.3:+77784740 | None:intergenic |
| TGATAAGAACGCAACCAATC+TGG | 0.466147 | 3.3:+77785520 | None:intergenic |
| CGTGTACAGTTTCTTTCTTG+TGG | 0.470835 | 3.3:+77785146 | None:intergenic |
| AACTGAAGATCATATTGATC+AGG | 0.477695 | 3.3:-77784679 | MS.gene049441:CDS |
| CTGGAGATAGTTCGCCAGAT+TGG | 0.481862 | 3.3:-77785534 | MS.gene049441:CDS |
| TTATCTCAGATTCCCCGTCC+GGG | 0.484353 | 3.3:-77783729 | MS.gene049441:CDS |
| TAAGTCACCTAAGAATCTTA+AGG | 0.484727 | 3.3:-77785253 | MS.gene049441:CDS |
| CCATCTTCACCAGAAGGTTG+AGG | 0.485121 | 3.3:+77784645 | None:intergenic |
| GAAGCTGAAACTATGGTTGA+AGG | 0.487381 | 3.3:-77782826 | MS.gene049441:intron |
| GACATACAACGCAAAATGTC+CGG | 0.488117 | 3.3:+77783262 | None:intergenic |
| ATAGATCTGAGTGGTGATAT+GGG | 0.488389 | 3.3:-77783769 | MS.gene049441:CDS |
| GTACTATGATGCAGGAAAGA+AGG | 0.488549 | 3.3:-77784982 | MS.gene049441:intron |
| TTTGATTCTGACGAGGAAGA+TGG | 0.492638 | 3.3:-77782648 | MS.gene049441:CDS |
| ATGTGAAAAGGGACATTGGA+TGG | 0.498992 | 3.3:-77782678 | MS.gene049441:intron |
| CAGGCTCTTGTTGAGTGTCA+AGG | 0.504953 | 3.3:-77783799 | MS.gene049441:CDS |
| ACATTTCCTGATCCCCGGAC+GGG | 0.507819 | 3.3:+77783716 | None:intergenic |
| CGAAATGGGACAGGTGGTGA+TGG | 0.508948 | 3.3:-77784382 | MS.gene049441:intron |
| GTGATATGGGAGCTGTAGGG+AGG | 0.516201 | 3.3:-77783756 | MS.gene049441:CDS |
| CTGACGAGGAAGATGGTAAG+AGG | 0.521899 | 3.3:-77782641 | MS.gene049441:CDS |
| AGACACCTGGTAAATCCAAA+AGG | 0.527784 | 3.3:-77782572 | MS.gene049441:CDS |
| ATCTTCCTCGTCAGAATCAA+AGG | 0.528675 | 3.3:+77782650 | None:intergenic |
| TTTCATGTGAAAAGGGACAT+TGG | 0.535477 | 3.3:-77782682 | MS.gene049441:intron |
| GAAAACAAAGGTTAATGCAA+AGG | 0.535733 | 3.3:-77784520 | MS.gene049441:CDS |
| AAGACTGCACACCAGTAAAA+GGG | 0.542093 | 3.3:-77784545 | MS.gene049441:CDS |
| AAGGTTAATGCAAAGGGGAA+AGG | 0.542305 | 3.3:-77784513 | MS.gene049441:intron |
| TACAGTTTCTTTCTTGTGGG+TGG | 0.543570 | 3.3:+77785150 | None:intergenic |
| TCTGGTGAAGATGGACTTCG+TGG | 0.547152 | 3.3:-77784636 | MS.gene049441:CDS |
| GATGGACTTCGTGGCAATGA+CGG | 0.550838 | 3.3:-77784627 | MS.gene049441:CDS |
| AGTGGTGATATGGGAGCTGT+AGG | 0.551651 | 3.3:-77783760 | MS.gene049441:CDS |
| CATTTCCTGATCCCCGGACG+GGG | 0.562368 | 3.3:+77783717 | None:intergenic |
| CACATTTCCTGATCCCCGGA+CGG | 0.578180 | 3.3:+77783715 | None:intergenic |
| GAATCAGATGACAGTGTCAC+CGG | 0.579458 | 3.3:+77785342 | None:intergenic |
| AGAAAGCTCCAAGTTCCAAG+AGG | 0.587132 | 3.3:-77782375 | MS.gene049441:CDS |
| CTGTATGAAGTCGTTCATGA+TGG | 0.587502 | 3.3:+77782873 | None:intergenic |
| TAAGCACATTTCCTGATCCC+CGG | 0.588249 | 3.3:+77783711 | None:intergenic |
| CACGCTGAGGAACAGACACC+TGG | 0.588572 | 3.3:-77782585 | MS.gene049441:CDS |
| CTTTGGGCAGACAGAGGCAA+AGG | 0.589063 | 3.3:-77783096 | MS.gene049441:intron |
| GCTATGATCACGACATGACT+CGG | 0.590906 | 3.3:+77784707 | None:intergenic |
| TCTTAAGGCCAATAAGAACA+AGG | 0.596455 | 3.3:-77785238 | MS.gene049441:CDS |
| GGTGCCCACTCCTAATTCGC+CGG | 0.598921 | 3.3:-77785361 | MS.gene049441:CDS |
| ACTTTCTCAGAAAGCATCAA+AGG | 0.599098 | 3.3:+77784137 | None:intergenic |
| GCGACTATCATGTAAATACT+CGG | 0.599318 | 3.3:+77785320 | None:intergenic |
| TATCTCAGATTCCCCGTCCG+GGG | 0.600901 | 3.3:-77783728 | MS.gene049441:CDS |
| ACCTGGTAAATCCAAAAGGA+AGG | 0.601971 | 3.3:-77782568 | MS.gene049441:CDS |
| AAGCATCAAAGGCAATATTG+AGG | 0.602144 | 3.3:+77784148 | None:intergenic |
| GTGGTGATATGGGAGCTGTA+GGG | 0.605513 | 3.3:-77783759 | MS.gene049441:CDS |
| GAAATGTGCTTAGATTTGAA+AGG | 0.606376 | 3.3:-77783700 | MS.gene049441:intron |
| GAAAGCTCCAAGTTCCAAGA+GGG | 0.606806 | 3.3:-77782374 | MS.gene049441:CDS |
| TCAGCTTCATAAACATCAGA+CGG | 0.609363 | 3.3:+77782841 | None:intergenic |
| CGAAGTCCATCTTCACCAGA+AGG | 0.616356 | 3.3:+77784639 | None:intergenic |
| ACAACGCAAAATGTCCGGCT+AGG | 0.617134 | 3.3:+77783267 | None:intergenic |
| AAAGAAACTGTACACGCGGA+AGG | 0.621325 | 3.3:-77785139 | MS.gene049441:CDS |
| AGGAATCCATTCATTCAATG+TGG | 0.621403 | 3.3:-77784746 | MS.gene049441:CDS |
| AAACATCTATAGTTCCTAGC+CGG | 0.625002 | 3.3:-77783281 | MS.gene049441:CDS |
| TGATATGGGAGCTGTAGGGA+GGG | 0.625544 | 3.3:-77783755 | MS.gene049441:CDS |
| GGAATCCATTCATTCAATGT+GGG | 0.629446 | 3.3:-77784745 | MS.gene049441:CDS |
| GGTTAGCTTTGGGCAGACAG+AGG | 0.635444 | 3.3:-77783102 | MS.gene049441:CDS |
| CAAGAAAGAAACTGTACACG+CGG | 0.635708 | 3.3:-77785143 | MS.gene049441:CDS |
| CTATGATGCAGGAAAGAAGG+AGG | 0.639245 | 3.3:-77784979 | MS.gene049441:intron |
| CATCAAAGGCAATATTGAGG+AGG | 0.641549 | 3.3:+77784151 | None:intergenic |
| TGTCACCGGCGAATTAGGAG+TGG | 0.641843 | 3.3:+77785356 | None:intergenic |
| GTCACCGGCGAATTAGGAGT+GGG | 0.658496 | 3.3:+77785357 | None:intergenic |
| CTTAAGGCCAATAAGAACAA+GGG | 0.659601 | 3.3:-77785237 | MS.gene049441:CDS |
| TGAGAAAGTTCATCGCACAA+AGG | 0.671129 | 3.3:-77784123 | MS.gene049441:intron |
| AAGGAAGGCGGACAAAACAT+CGG | 0.672092 | 3.3:-77782553 | MS.gene049441:intron |
| AGTAAAAGGGAAGAAAACAA+AGG | 0.673109 | 3.3:-77784532 | MS.gene049441:CDS |
| CAGGGTGCTGAAAAGAAGAG+AGG | 0.682800 | 3.3:-77782439 | MS.gene049441:CDS |
| TGATCAAAACGAGCACGCTG+AGG | 0.690459 | 3.3:-77782598 | MS.gene049441:CDS |
| GCTTCATAAACATCAGACGG+TGG | 0.691289 | 3.3:+77782844 | None:intergenic |
| TGGTAAATCCAAAAGGAAGG+CGG | 0.692323 | 3.3:-77782565 | MS.gene049441:CDS |
| GCTCGATTCAGACACCGACA+AGG | 0.693845 | 3.3:-77784943 | MS.gene049441:CDS |
| AAACAAAGGTTAATGCAAAG+GGG | 0.698410 | 3.3:-77784518 | MS.gene049441:CDS |
| GGTGACTCCATAGATCTGAG+TGG | 0.759776 | 3.3:-77783778 | MS.gene049441:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGTAAATTAAATAAATG+AGG | + | chr3.3:77784926-77784945 | None:intergenic | 10.0% |
| !!! | TTTTAACTTTTAAGAAAAAA+AGG | - | chr3.3:77783426-77783445 | MS.gene049441:intron | 10.0% |
| !! | TTTAGATGAAATAGTATTTA+TGG | - | chr3.3:77782829-77782848 | MS.gene049441:CDS | 15.0% |
| !!! | ATATTATTTTACCGAAAAAA+AGG | - | chr3.3:77785155-77785174 | MS.gene049441:CDS | 15.0% |
| !!! | CTTGATATTTGATTTTAATT+TGG | - | chr3.3:77782799-77782818 | MS.gene049441:intron | 15.0% |
| !!! | TCATATTTTTTCCTTTTTTT+CGG | + | chr3.3:77785169-77785188 | None:intergenic | 15.0% |
| !! | AAAGCAATATTTAAAAGGTA+TGG | + | chr3.3:77784749-77784768 | None:intergenic | 20.0% |
| !! | AAATAAAGATTTGAACAATC+AGG | + | chr3.3:77784579-77784598 | None:intergenic | 20.0% |
| !! | AAGAAAATTACGACTTATAA+TGG | + | chr3.3:77784523-77784542 | None:intergenic | 20.0% |
| !! | ACATTAGAACAAATATAACT+TGG | + | chr3.3:77784498-77784517 | None:intergenic | 20.0% |
| !! | AGTTACAGGTTAAATATTAA+TGG | + | chr3.3:77784992-77785011 | None:intergenic | 20.0% |
| !! | GTATGAAAGCAATATTTAAA+AGG | + | chr3.3:77784754-77784773 | None:intergenic | 20.0% |
| !!! | ATCTTACCTGTTTTAAAAAA+AGG | - | chr3.3:77784401-77784420 | MS.gene049441:intron | 20.0% |
| !!! | ATTTCCTTTTTTCATGAAAA+AGG | - | chr3.3:77784045-77784064 | MS.gene049441:intron | 20.0% |
| !!! | CAAATCTTTATTTTCTTTTC+AGG | - | chr3.3:77784586-77784605 | MS.gene049441:CDS | 20.0% |
| !!! | CTATTATTTTCATGTGAAAA+GGG | - | chr3.3:77785212-77785231 | MS.gene049441:CDS | 20.0% |
| !!! | GCTTATAATTTTGTTTTGAA+TGG | - | chr3.3:77783960-77783979 | MS.gene049441:intron | 20.0% |
| !!! | TCTATTATTTTCATGTGAAA+AGG | - | chr3.3:77785211-77785230 | MS.gene049441:CDS | 20.0% |
| !!! | TCTTACCTGTTTTAAAAAAA+GGG | - | chr3.3:77784402-77784421 | MS.gene049441:intron | 20.0% |
| !!! | TTTTTCATGAAAAAAGGAAA+TGG | + | chr3.3:77784046-77784065 | None:intergenic | 20.0% |
| ! | AAAACAAAGGTTAATGCAAA+GGG | - | chr3.3:77783382-77783401 | MS.gene049441:intron | 25.0% |
| ! | AAAATAGCTAAGCTGTATTA+TGG | + | chr3.3:77784330-77784349 | None:intergenic | 25.0% |
| ! | AACAATGTCATTCTTACATT+AGG | + | chr3.3:77783591-77783610 | None:intergenic | 25.0% |
| ! | AAGTAAAATCTAGACAACAA+CGG | + | chr3.3:77784832-77784851 | None:intergenic | 25.0% |
| ! | AGAAACATGTATAAATGGTA+AGG | + | chr3.3:77783499-77783518 | None:intergenic | 25.0% |
| ! | ATAATCACAATACAAATAGC+AGG | + | chr3.3:77783111-77783130 | None:intergenic | 25.0% |
| ! | GAAATCAAAATGTCAAAAAG+AGG | + | chr3.3:77784471-77784490 | None:intergenic | 25.0% |
| ! | TAAAATCCTCAGTTAATTGT+TGG | + | chr3.3:77785114-77785133 | None:intergenic | 25.0% |
| ! | TCGAAAACATATAAATTTCG+TGG | - | chr3.3:77783918-77783937 | MS.gene049441:intron | 25.0% |
| ! | TCTATCTGAAAATAAGTTAC+AGG | + | chr3.3:77785006-77785025 | None:intergenic | 25.0% |
| ! | TTATACATGTTTCTCGAAAT+GGG | - | chr3.3:77783505-77783524 | MS.gene049441:intron | 25.0% |
| ! | TTTATACATGTTTCTCGAAA+TGG | - | chr3.3:77783504-77783523 | MS.gene049441:intron | 25.0% |
| ! | TTTCGAGAAACATGTATAAA+TGG | + | chr3.3:77783504-77783523 | None:intergenic | 25.0% |
| !! | ATAATATTTAAAGCAGCACT+AGG | + | chr3.3:77785142-77785161 | None:intergenic | 25.0% |
| !! | CAATATGATCTTCAGTTTTT+GGG | + | chr3.3:77783219-77783238 | None:intergenic | 25.0% |
| !! | CCATGCTGTAAAATATTTTT+AGG | + | chr3.3:77783624-77783643 | None:intergenic | 25.0% |
| !! | CCTAAAAATATTTTACAGCA+TGG | - | chr3.3:77783621-77783640 | MS.gene049441:intron | 25.0% |
| !! | TCAATATGATCTTCAGTTTT+TGG | + | chr3.3:77783220-77783239 | None:intergenic | 25.0% |
| !! | TTTCTTCTTCTTTTTCTTTC+AGG | - | chr3.3:77784778-77784797 | MS.gene049441:intron | 25.0% |
| !!! | AGATTCCCTTTTTTTAAAAC+AGG | + | chr3.3:77784410-77784429 | None:intergenic | 25.0% |
| !!! | GTTTCCTTTTTCATGAAAAA+AGG | + | chr3.3:77784052-77784071 | None:intergenic | 25.0% |
| !!! | GTTTGGTTTTATAGTTGTAT+GGG | - | chr3.3:77783843-77783862 | MS.gene049441:intron | 25.0% |
| !!! | TATACCAAATGTTTTTGCAT+AGG | - | chr3.3:77783135-77783154 | MS.gene049441:intron | 25.0% |
| !!! | TGTAACTTATTTTCAGATAG+AGG | - | chr3.3:77785005-77785024 | MS.gene049441:intron | 25.0% |
| !!! | TGTTTGGTTTTATAGTTGTA+TGG | - | chr3.3:77783842-77783861 | MS.gene049441:intron | 25.0% |
| AAAACCAAACATGTAGCAAA+GGG | + | chr3.3:77783833-77783852 | None:intergenic | 30.0% | |
| AAACAAAGGTTAATGCAAAG+GGG | - | chr3.3:77783383-77783402 | MS.gene049441:intron | 30.0% | |
| AAAGATTTGAACAATCAGGT+AGG | + | chr3.3:77784575-77784594 | None:intergenic | 30.0% | |
| AACTGAAGATCATATTGATC+AGG | - | chr3.3:77783222-77783241 | MS.gene049441:intron | 30.0% | |
| AAGAAGAGAGGTAAAAATAC+TGG | - | chr3.3:77785474-77785493 | MS.gene049441:intron | 30.0% | |
| AAGGTATGGTATCTTAATCA+TGG | + | chr3.3:77784735-77784754 | None:intergenic | 30.0% | |
| AATCTAAACCAAAAGCAACT+AGG | + | chr3.3:77785381-77785400 | None:intergenic | 30.0% | |
| AGTAAAAGGGAAGAAAACAA+AGG | - | chr3.3:77783369-77783388 | MS.gene049441:intron | 30.0% | |
| AGTAGTAATCCAGATGTATT+CGG | + | chr3.3:77784883-77784902 | None:intergenic | 30.0% | |
| ATTCTTACATTAGGTACAAC+AGG | + | chr3.3:77783582-77783601 | None:intergenic | 30.0% | |
| ATTGTGTCAAAAATATGGGT+TGG | - | chr3.3:77783079-77783098 | MS.gene049441:intron | 30.0% | |
| CATGCATATGGATATGAAAT+AGG | - | chr3.3:77783468-77783487 | MS.gene049441:intron | 30.0% | |
| CATGTTTAAATACTACCACA+GGG | - | chr3.3:77783867-77783886 | MS.gene049441:intron | 30.0% | |
| CTAACATTTAAAGATGCGAT+GGG | + | chr3.3:77783004-77783023 | None:intergenic | 30.0% | |
| GAAAACAAAGGTTAATGCAA+AGG | - | chr3.3:77783381-77783400 | MS.gene049441:intron | 30.0% | |
| GAAATGTGCTTAGATTTGAA+AGG | - | chr3.3:77784201-77784220 | MS.gene049441:intron | 30.0% | |
| GATTCCTATGCAAAAACATT+TGG | + | chr3.3:77783142-77783161 | None:intergenic | 30.0% | |
| GTAAAAATAACACTCTCGAA+TGG | + | chr3.3:77782885-77782904 | None:intergenic | 30.0% | |
| GTAATCTGCATTTATCATCA+CGG | - | chr3.3:77784671-77784690 | MS.gene049441:CDS | 30.0% | |
| TAAAACCAAACATGTAGCAA+AGG | + | chr3.3:77783834-77783853 | None:intergenic | 30.0% | |
| TAAATATGTCCGAATACATC+TGG | - | chr3.3:77784871-77784890 | MS.gene049441:intron | 30.0% | |
| TAAGTCACCTAAGAATCTTA+AGG | - | chr3.3:77782648-77782667 | MS.gene049441:CDS | 30.0% | |
| TGTTTATGAAGCTGAAACTA+TGG | - | chr3.3:77785068-77785087 | MS.gene049441:intron | 30.0% | |
| TTAAGATTCTTAGGTGACTT+AGG | + | chr3.3:77782649-77782668 | None:intergenic | 30.0% | |
| TTGCTGAAAATTTCGAAACA+GGG | - | chr3.3:77785444-77785463 | MS.gene049441:intron | 30.0% | |
| TTGTGCAATACTAACATCAT+TGG | - | chr3.3:77782493-77782512 | MS.gene049441:intron | 30.0% | |
| TTGTTCATGTATCAAAGTGA+CGG | + | chr3.3:77783647-77783666 | None:intergenic | 30.0% | |
| ! | ATTTTACAAAATCCTGGTCA+AGG | + | chr3.3:77784963-77784982 | None:intergenic | 30.0% |
| ! | GACCAGGATTTTGTAAAATA+CGG | - | chr3.3:77784964-77784983 | MS.gene049441:CDS | 30.0% |
| ! | GTATTGATGATTGAAATTGC+TGG | - | chr3.3:77785406-77785425 | MS.gene049441:intron | 30.0% |
| !! | ACACTACTTTTGTCTAATAG+TGG | - | chr3.3:77784546-77784565 | MS.gene049441:CDS | 30.0% |
| !! | TTACACATTTTTGTGCTACT+AGG | - | chr3.3:77782519-77782538 | MS.gene049441:intron | 30.0% |
| !! | TTATTGGCCTTAAGATTCTT+AGG | + | chr3.3:77782658-77782677 | None:intergenic | 30.0% |
| !! | TTTGTTTTCTTCCCTTTTAC+TGG | + | chr3.3:77783370-77783389 | None:intergenic | 30.0% |
| !!! | TCAAAAATATGGGTTGGTTT+TGG | - | chr3.3:77783085-77783104 | MS.gene049441:intron | 30.0% |
| !!! | TTTTCTTTCAGGTTAGCTTT+GGG | - | chr3.3:77784789-77784808 | MS.gene049441:intron | 30.0% |
| !!! | TTTTTCTTTCAGGTTAGCTT+TGG | - | chr3.3:77784788-77784807 | MS.gene049441:intron | 30.0% |
| AAACATCTATAGTTCCTAGC+CGG | - | chr3.3:77784620-77784639 | MS.gene049441:CDS | 35.0% | |
| AAGAGAGGTAAAAATACTGG+AGG | - | chr3.3:77785477-77785496 | MS.gene049441:intron | 35.0% | |
| AAGCATCAAAGGCAATATTG+AGG | + | chr3.3:77783756-77783775 | None:intergenic | 35.0% | |
| AATCCTCAGTTAATTGTTGG+TGG | + | chr3.3:77785111-77785130 | None:intergenic | 35.0% | |
| ACATTGTACATCAGTTCCTA+AGG | - | chr3.3:77782465-77782484 | MS.gene049441:intron | 35.0% | |
| AGGAATCCATTCATTCAATG+TGG | - | chr3.3:77783155-77783174 | MS.gene049441:intron | 35.0% | |
| AGGCCAAATAGAAACTTTCA+AGG | + | chr3.3:77784697-77784716 | None:intergenic | 35.0% | |
| ATAGATCTGAGTGGTGATAT+GGG | - | chr3.3:77784132-77784151 | MS.gene049441:CDS | 35.0% | |
| CATATCCATATGCATGAAGA+TGG | + | chr3.3:77783464-77783483 | None:intergenic | 35.0% | |
| CATTGTACATCAGTTCCTAA+GGG | - | chr3.3:77782466-77782485 | MS.gene049441:intron | 35.0% | |
| CCATCGCATCTTTAAATGTT+AGG | - | chr3.3:77783002-77783021 | MS.gene049441:intron | 35.0% | |
| CCATGTTTAAATACTACCAC+AGG | - | chr3.3:77783866-77783885 | MS.gene049441:intron | 35.0% | |
| CCTAACATTTAAAGATGCGA+TGG | + | chr3.3:77783005-77783024 | None:intergenic | 35.0% | |
| CCTGTGGTAGTATTTAAACA+TGG | + | chr3.3:77783869-77783888 | None:intergenic | 35.0% | |
| CTTAAGGCCAATAAGAACAA+GGG | - | chr3.3:77782664-77782683 | MS.gene049441:CDS | 35.0% | |
| CTTTGCTTTCTATTTGTTCC+AGG | - | chr3.3:77783724-77783743 | MS.gene049441:CDS | 35.0% | |
| GAGGTAATCGCTAAAAATCA+AGG | + | chr3.3:77784452-77784471 | None:intergenic | 35.0% | |
| GCGACTATCATGTAAATACT+CGG | + | chr3.3:77782584-77782603 | None:intergenic | 35.0% | |
| GCGCATTGTGTCAAAAATAT+GGG | - | chr3.3:77783075-77783094 | MS.gene049441:intron | 35.0% | |
| GGAATCCATTCATTCAATGT+GGG | - | chr3.3:77783156-77783175 | MS.gene049441:intron | 35.0% | |
| GTGTACAGTTTCTTTCTTGT+GGG | + | chr3.3:77782757-77782776 | None:intergenic | 35.0% | |
| GTTGCTGAAAATTTCGAAAC+AGG | - | chr3.3:77785443-77785462 | MS.gene049441:intron | 35.0% | |
| TAGGTGGCATTTGTAGATTT+GGG | - | chr3.3:77783021-77783040 | MS.gene049441:intron | 35.0% | |
| TCAGCTTCATAAACATCAGA+CGG | + | chr3.3:77785063-77785082 | None:intergenic | 35.0% | |
| TCGCATCTTTAAATGTTAGG+TGG | - | chr3.3:77783005-77783024 | MS.gene049441:intron | 35.0% | |
| TCTTAAGGCCAATAAGAACA+AGG | - | chr3.3:77782663-77782682 | MS.gene049441:CDS | 35.0% | |
| TGCGCATTGTGTCAAAAATA+TGG | - | chr3.3:77783074-77783093 | MS.gene049441:intron | 35.0% | |
| TTAGGTGGCATTTGTAGATT+TGG | - | chr3.3:77783020-77783039 | MS.gene049441:intron | 35.0% | |
| TTGACACAATGCGCATAATA+AGG | + | chr3.3:77783069-77783088 | None:intergenic | 35.0% | |
| TTTCATGTGAAAAGGGACAT+TGG | - | chr3.3:77785219-77785238 | MS.gene049441:CDS | 35.0% | |
| ! | AAAGCACAATTTAGAATGCC+AGG | + | chr3.3:77783708-77783727 | None:intergenic | 35.0% |
| ! | CACCGTATTTTACAAAATCC+TGG | + | chr3.3:77784969-77784988 | None:intergenic | 35.0% |
| ! | TTTTGCGTTGTATGTCATCT+TGG | - | chr3.3:77784646-77784665 | MS.gene049441:CDS | 35.0% |
| ! | TTTTTCCTTTGATTCTGACG+AGG | - | chr3.3:77785246-77785265 | MS.gene049441:CDS | 35.0% |
| !! | ACTTTCTCAGAAAGCATCAA+AGG | + | chr3.3:77783767-77783786 | None:intergenic | 35.0% |
| !! | GTAAGTTTCCTAGTTGCTTT+TGG | - | chr3.3:77785370-77785389 | MS.gene049441:intron | 35.0% |
| !! | GTCATTTTGTACTATGATGC+AGG | - | chr3.3:77782911-77782930 | MS.gene049441:intron | 35.0% |
| !! | GTTTTGAATGGAACGACAAA+TGG | - | chr3.3:77783972-77783991 | MS.gene049441:intron | 35.0% |
| AAGACTGCACACCAGTAAAA+GGG | - | chr3.3:77783356-77783375 | MS.gene049441:intron | 40.0% | |
| AAGGTTAATGCAAAGGGGAA+AGG | - | chr3.3:77783388-77783407 | MS.gene049441:intron | 40.0% | |
| ACCTGGTAAATCCAAAAGGA+AGG | - | chr3.3:77785333-77785352 | MS.gene049441:CDS | 40.0% | |
| AGACACCTGGTAAATCCAAA+AGG | - | chr3.3:77785329-77785348 | MS.gene049441:CDS | 40.0% | |
| AGGTGGCATTTGTAGATTTG+GGG | - | chr3.3:77783022-77783041 | MS.gene049441:intron | 40.0% | |
| AGTGAAATGCGTTACTCATC+TGG | + | chr3.3:77783897-77783916 | None:intergenic | 40.0% | |
| ATCTTCCTCGTCAGAATCAA+AGG | + | chr3.3:77785254-77785273 | None:intergenic | 40.0% | |
| ATGTGAAAAGGGACATTGGA+TGG | - | chr3.3:77785223-77785242 | MS.gene049441:CDS | 40.0% | |
| CAAAAAGGCTTCAAAAGCGA+AGG | - | chr3.3:77783309-77783328 | MS.gene049441:intron | 40.0% | |
| CAAGAAAGAAACTGTACACG+CGG | - | chr3.3:77782758-77782777 | MS.gene049441:intron | 40.0% | |
| CATAGATCTGAGTGGTGATA+TGG | - | chr3.3:77784131-77784150 | MS.gene049441:CDS | 40.0% | |
| CATATCACCACTCAGATCTA+TGG | + | chr3.3:77784133-77784152 | None:intergenic | 40.0% | |
| CATCAAAGGCAATATTGAGG+AGG | + | chr3.3:77783753-77783772 | None:intergenic | 40.0% | |
| CATCCACCAACAATTAACTG+AGG | - | chr3.3:77785105-77785124 | MS.gene049441:intron | 40.0% | |
| CATGGAAGTAACTAGCTACA+AGG | + | chr3.3:77784717-77784736 | None:intergenic | 40.0% | |
| CGGAAAATCTCCATCCAAAA+AGG | - | chr3.3:77783294-77783313 | MS.gene049441:CDS | 40.0% | |
| CGGCCTTGAAAGTTTCTATT+TGG | - | chr3.3:77784691-77784710 | MS.gene049441:CDS | 40.0% | |
| CGTGTACAGTTTCTTTCTTG+TGG | + | chr3.3:77782758-77782777 | None:intergenic | 40.0% | |
| CTGTATGAAGTCGTTCATGA+TGG | + | chr3.3:77785031-77785050 | None:intergenic | 40.0% | |
| GAAACTAAACCTCAACCTTC+TGG | - | chr3.3:77783247-77783266 | MS.gene049441:intron | 40.0% | |
| GAAGCTGAAACTATGGTTGA+AGG | - | chr3.3:77785075-77785094 | MS.gene049441:intron | 40.0% | |
| GACATACAACGCAAAATGTC+CGG | + | chr3.3:77784642-77784661 | None:intergenic | 40.0% | |
| GATTCCCTTTGCTACATGTT+TGG | - | chr3.3:77783826-77783845 | MS.gene049441:intron | 40.0% | |
| GTACTATGATGCAGGAAAGA+AGG | - | chr3.3:77782919-77782938 | MS.gene049441:intron | 40.0% | |
| GTATACGCAGTGTTATCATC+AGG | + | chr3.3:77784299-77784318 | None:intergenic | 40.0% | |
| GTATTGCACAACTAACCCTT+AGG | + | chr3.3:77782484-77782503 | None:intergenic | 40.0% | |
| GTCTTCAACGAAAAAGACGT+TGG | - | chr3.3:77782696-77782715 | MS.gene049441:intron | 40.0% | |
| TACACGCGGAAGGATAAAAA+TGG | - | chr3.3:77782772-77782791 | MS.gene049441:intron | 40.0% | |
| TACAGTTTCTTTCTTGTGGG+TGG | + | chr3.3:77782754-77782773 | None:intergenic | 40.0% | |
| TCAACGAAAAAGACGTTGGA+AGG | - | chr3.3:77782700-77782719 | MS.gene049441:intron | 40.0% | |
| TGAGAAAGTTCATCGCACAA+AGG | - | chr3.3:77783778-77783797 | MS.gene049441:CDS | 40.0% | |
| TGATAAGAACGCAACCAATC+TGG | + | chr3.3:77782384-77782403 | None:intergenic | 40.0% | |
| TGGAAGAAAAGTTGCTAGTC+TGG | - | chr3.3:77783938-77783957 | MS.gene049441:intron | 40.0% | |
| TGGTAAATCCAAAAGGAAGG+CGG | - | chr3.3:77785336-77785355 | MS.gene049441:CDS | 40.0% | |
| TTGCTCCATCTTCATGCATA+TGG | - | chr3.3:77783456-77783475 | MS.gene049441:intron | 40.0% | |
| TTTATGCTCTGCTTCCTTGT+CGG | + | chr3.3:77782975-77782994 | None:intergenic | 40.0% | |
| TTTGATTCTGACGAGGAAGA+TGG | - | chr3.3:77785253-77785272 | MS.gene049441:CDS | 40.0% | |
| ! | AAAAAGCTGCTCTGTTTTGC+AGG | - | chr3.3:77784083-77784102 | MS.gene049441:intron | 40.0% |
| ! | AGATTGGTTGCGTTCTTATC+AGG | - | chr3.3:77782383-77782402 | MS.gene049441:CDS | 40.0% |
| ! | GCAAAACAGAGCAGCTTTTT+AGG | + | chr3.3:77784083-77784102 | None:intergenic | 40.0% |
| ! | GCTTTCTTCTTTGCTGTCTT+TGG | + | chr3.3:77785513-77785532 | None:intergenic | 40.0% |
| ! | TAGTCGCAGTTTTTCTGATG+AGG | - | chr3.3:77782597-77782616 | MS.gene049441:CDS | 40.0% |
| !! | CGTCTTTTTCGTTGAAGACT+TGG | + | chr3.3:77782695-77782714 | None:intergenic | 40.0% |
| !!! | ACAGAGCAGCTTTTTAGGAT+TGG | + | chr3.3:77784078-77784097 | None:intergenic | 40.0% |
| !!! | CTTCGCTTTTGAAGCCTTTT+TGG | + | chr3.3:77783311-77783330 | None:intergenic | 40.0% |
| !!! | GCTTTTGAAGCCTTTTTGGA+TGG | + | chr3.3:77783307-77783326 | None:intergenic | 40.0% |
| AAAGAAACTGTACACGCGGA+AGG | - | chr3.3:77782762-77782781 | MS.gene049441:intron | 45.0% | |
| AAGGAAGGCGGACAAAACAT+CGG | - | chr3.3:77785348-77785367 | MS.gene049441:CDS | 45.0% | |
| AAGTTCATCGCACAAAGGTC+AGG | - | chr3.3:77783783-77783802 | MS.gene049441:CDS | 45.0% | |
| AGAAAGCTCCAAGTTCCAAG+AGG | - | chr3.3:77785526-77785545 | MS.gene049441:CDS | 45.0% | |
| ATTATCTCAGATTCCCCGTC+CGG | - | chr3.3:77784171-77784190 | MS.gene049441:intron | 45.0% | |
| CAGCTCCCACATTGAATGAA+TGG | + | chr3.3:77783164-77783183 | None:intergenic | 45.0% | |
| CATGTTTCTCGAAATGGGAC+AGG | - | chr3.3:77783510-77783529 | MS.gene049441:intron | 45.0% | |
| CTATGATGCAGGAAAGAAGG+AGG | - | chr3.3:77782922-77782941 | MS.gene049441:intron | 45.0% | |
| GAAAGCTCCAAGTTCCAAGA+GGG | - | chr3.3:77785527-77785546 | MS.gene049441:CDS | 45.0% | |
| GAAGACTGCACACCAGTAAA+AGG | - | chr3.3:77783355-77783374 | MS.gene049441:intron | 45.0% | |
| GAATCAGATGACAGTGTCAC+CGG | + | chr3.3:77782562-77782581 | None:intergenic | 45.0% | |
| GCAATATTGAGGAGGAAACC+TGG | + | chr3.3:77783745-77783764 | None:intergenic | 45.0% | |
| GCTATGATCACGACATGACT+CGG | + | chr3.3:77783197-77783216 | None:intergenic | 45.0% | |
| GCTTCATAAACATCAGACGG+TGG | + | chr3.3:77785060-77785079 | None:intergenic | 45.0% | |
| GGCACTACCCTTGTTCTTAT+TGG | + | chr3.3:77782674-77782693 | None:intergenic | 45.0% | |
| TAAGCACATTTCCTGATCCC+CGG | + | chr3.3:77784193-77784212 | None:intergenic | 45.0% | |
| TTTCTTAGGCTTTGCCCTCT+TGG | + | chr3.3:77785544-77785563 | None:intergenic | 45.0% | |
| ! | CAAAGGGGAAAGGTACGAAA+TGG | - | chr3.3:77783398-77783417 | MS.gene049441:intron | 45.0% |
| ! | CACAATTTAGAATGCCAGGC+TGG | + | chr3.3:77783704-77783723 | None:intergenic | 45.0% |
| ! | GCCTTCCTTTTGGATTTACC+AGG | + | chr3.3:77785337-77785356 | None:intergenic | 45.0% |
| ! | TGTTTTGTCCGCCTTCCTTT+TGG | + | chr3.3:77785347-77785366 | None:intergenic | 45.0% |
| ! | TTTAGAATGCCAGGCTGGAT+AGG | + | chr3.3:77783699-77783718 | None:intergenic | 45.0% |
| !! | CGTGCTCGTTTTGATCAGTT+GGG | + | chr3.3:77785300-77785319 | None:intergenic | 45.0% |
| !! | CTCGTTTTGATCAGTTGGGT+GGG | + | chr3.3:77785296-77785315 | None:intergenic | 45.0% |
| ACAACGCAAAATGTCCGGCT+AGG | + | chr3.3:77784637-77784656 | None:intergenic | 50.0% | |
| AGTGGTGATATGGGAGCTGT+AGG | - | chr3.3:77784141-77784160 | MS.gene049441:CDS | 50.0% | |
| CAGGCTCTTGTTGAGTGTCA+AGG | - | chr3.3:77784102-77784121 | MS.gene049441:intron | 50.0% | |
| CCATCTTCACCAGAAGGTTG+AGG | + | chr3.3:77783259-77783278 | None:intergenic | 50.0% | |
| CCTCAACCTTCTGGTGAAGA+TGG | - | chr3.3:77783256-77783275 | MS.gene049441:intron | 50.0% | |
| CGAAGTCCATCTTCACCAGA+AGG | + | chr3.3:77783265-77783284 | None:intergenic | 50.0% | |
| CTGACGAGGAAGATGGTAAG+AGG | - | chr3.3:77785260-77785279 | MS.gene049441:CDS | 50.0% | |
| CTGGAGATAGTTCGCCAGAT+TGG | - | chr3.3:77782367-77782386 | MS.gene049441:CDS | 50.0% | |
| GGCTGGATAGGCAGTCAATA+TGG | + | chr3.3:77783687-77783706 | None:intergenic | 50.0% | |
| GGTGACTCCATAGATCTGAG+TGG | - | chr3.3:77784123-77784142 | MS.gene049441:intron | 50.0% | |
| GTGGTGATATGGGAGCTGTA+GGG | - | chr3.3:77784142-77784161 | MS.gene049441:CDS | 50.0% | |
| GTTTCTCGAAATGGGACAGG+TGG | - | chr3.3:77783513-77783532 | MS.gene049441:intron | 50.0% | |
| TACTCATCTGGTTGTCCCTG+TGG | + | chr3.3:77783885-77783904 | None:intergenic | 50.0% | |
| TGATATGGGAGCTGTAGGGA+GGG | - | chr3.3:77784146-77784165 | MS.gene049441:CDS | 50.0% | |
| TGATCAAAACGAGCACGCTG+AGG | - | chr3.3:77785303-77785322 | MS.gene049441:CDS | 50.0% | |
| TTATCTCAGATTCCCCGTCC+GGG | - | chr3.3:77784172-77784191 | MS.gene049441:intron | 50.0% | |
| TTCATCGCACAAAGGTCAGG+TGG | - | chr3.3:77783786-77783805 | MS.gene049441:CDS | 50.0% | |
| ! | GATGGACTTCGTGGCAATGA+CGG | - | chr3.3:77783274-77783293 | MS.gene049441:CDS | 50.0% |
| ! | GTGATTAGTCAGCCTTGACC+AGG | - | chr3.3:77784948-77784967 | MS.gene049441:CDS | 50.0% |
| ! | TATTGACTGCCTATCCAGCC+TGG | - | chr3.3:77783687-77783706 | MS.gene049441:intron | 50.0% |
| ! | TCTGGTGAAGATGGACTTCG+TGG | - | chr3.3:77783265-77783284 | MS.gene049441:intron | 50.0% |
| !! | CAGGGTGCTGAAAAGAAGAG+AGG | - | chr3.3:77785462-77785481 | MS.gene049441:intron | 50.0% |
| !! | GCGTGCTCGTTTTGATCAGT+TGG | + | chr3.3:77785301-77785320 | None:intergenic | 50.0% |
| !! | GCTCGTTTTGATCAGTTGGG+TGG | + | chr3.3:77785297-77785316 | None:intergenic | 50.0% |
| !! | GTTTTGATCAGTTGGGTGGG+CGG | + | chr3.3:77785293-77785312 | None:intergenic | 50.0% |
| ACATTTCCTGATCCCCGGAC+GGG | + | chr3.3:77784188-77784207 | None:intergenic | 55.0% | |
| CACATTTCCTGATCCCCGGA+CGG | + | chr3.3:77784189-77784208 | None:intergenic | 55.0% | |
| CGAAATGGGACAGGTGGTGA+TGG | - | chr3.3:77783519-77783538 | MS.gene049441:intron | 55.0% | |
| CTTTGGGCAGACAGAGGCAA+AGG | - | chr3.3:77784805-77784824 | MS.gene049441:intron | 55.0% | |
| GACAGTGTCACCGGCGAATT+AGG | + | chr3.3:77782553-77782572 | None:intergenic | 55.0% | |
| GCTCGATTCAGACACCGACA+AGG | - | chr3.3:77782958-77782977 | MS.gene049441:intron | 55.0% | |
| GGCTTTGCCCTCTTGGAACT+TGG | + | chr3.3:77785537-77785556 | None:intergenic | 55.0% | |
| GTCACCGGCGAATTAGGAGT+GGG | + | chr3.3:77782547-77782566 | None:intergenic | 55.0% | |
| GTGATATGGGAGCTGTAGGG+AGG | - | chr3.3:77784145-77784164 | MS.gene049441:CDS | 55.0% | |
| TATCTCAGATTCCCCGTCCG+GGG | - | chr3.3:77784173-77784192 | MS.gene049441:intron | 55.0% | |
| TGTCACCGGCGAATTAGGAG+TGG | + | chr3.3:77782548-77782567 | None:intergenic | 55.0% | |
| !! | GGTTAGCTTTGGGCAGACAG+AGG | - | chr3.3:77784799-77784818 | MS.gene049441:intron | 55.0% |
| CACGCTGAGGAACAGACACC+TGG | - | chr3.3:77785316-77785335 | MS.gene049441:CDS | 60.0% | |
| CATTTCCTGATCCCCGGACG+GGG | + | chr3.3:77784187-77784206 | None:intergenic | 60.0% | |
| GGTGCCCACTCCTAATTCGC+CGG | - | chr3.3:77782540-77782559 | MS.gene049441:intron | 60.0% | |
| AGATTCCCCGTCCGGGGATC+AGG | - | chr3.3:77784179-77784198 | MS.gene049441:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 77782357 | 77785566 | 77782357 | ID=MS.gene049441 |
| chr3.3 | mRNA | 77782357 | 77785566 | 77782357 | ID=MS.gene049441.t1;Parent=MS.gene049441 |
| chr3.3 | exon | 77785519 | 77785566 | 77785519 | ID=MS.gene049441.t1.exon1;Parent=MS.gene049441.t1 |
| chr3.3 | CDS | 77785519 | 77785566 | 77785519 | ID=cds.MS.gene049441.t1;Parent=MS.gene049441.t1 |
| chr3.3 | exon | 77785130 | 77785382 | 77785130 | ID=MS.gene049441.t1.exon2;Parent=MS.gene049441.t1 |
| chr3.3 | CDS | 77785130 | 77785382 | 77785130 | ID=cds.MS.gene049441.t1;Parent=MS.gene049441.t1 |
| chr3.3 | exon | 77784929 | 77784990 | 77784929 | ID=MS.gene049441.t1.exon3;Parent=MS.gene049441.t1 |
| chr3.3 | CDS | 77784929 | 77784990 | 77784929 | ID=cds.MS.gene049441.t1;Parent=MS.gene049441.t1 |
| chr3.3 | exon | 77784514 | 77784766 | 77784514 | ID=MS.gene049441.t1.exon4;Parent=MS.gene049441.t1 |
| chr3.3 | CDS | 77784514 | 77784766 | 77784514 | ID=cds.MS.gene049441.t1;Parent=MS.gene049441.t1 |
| chr3.3 | exon | 77784330 | 77784391 | 77784330 | ID=MS.gene049441.t1.exon5;Parent=MS.gene049441.t1 |
| chr3.3 | CDS | 77784330 | 77784391 | 77784330 | ID=cds.MS.gene049441.t1;Parent=MS.gene049441.t1 |
| chr3.3 | exon | 77784124 | 77784177 | 77784124 | ID=MS.gene049441.t1.exon6;Parent=MS.gene049441.t1 |
| chr3.3 | CDS | 77784124 | 77784177 | 77784124 | ID=cds.MS.gene049441.t1;Parent=MS.gene049441.t1 |
| chr3.3 | exon | 77783701 | 77783818 | 77783701 | ID=MS.gene049441.t1.exon7;Parent=MS.gene049441.t1 |
| chr3.3 | CDS | 77783701 | 77783818 | 77783701 | ID=cds.MS.gene049441.t1;Parent=MS.gene049441.t1 |
| chr3.3 | exon | 77783269 | 77783315 | 77783269 | ID=MS.gene049441.t1.exon8;Parent=MS.gene049441.t1 |
| chr3.3 | CDS | 77783269 | 77783315 | 77783269 | ID=cds.MS.gene049441.t1;Parent=MS.gene049441.t1 |
| chr3.3 | exon | 77783097 | 77783123 | 77783097 | ID=MS.gene049441.t1.exon9;Parent=MS.gene049441.t1 |
| chr3.3 | CDS | 77783097 | 77783123 | 77783097 | ID=cds.MS.gene049441.t1;Parent=MS.gene049441.t1 |
| chr3.3 | exon | 77782827 | 77782902 | 77782827 | ID=MS.gene049441.t1.exon10;Parent=MS.gene049441.t1 |
| chr3.3 | CDS | 77782827 | 77782902 | 77782827 | ID=cds.MS.gene049441.t1;Parent=MS.gene049441.t1 |
| chr3.3 | exon | 77782554 | 77782690 | 77782554 | ID=MS.gene049441.t1.exon11;Parent=MS.gene049441.t1 |
| chr3.3 | CDS | 77782554 | 77782690 | 77782554 | ID=cds.MS.gene049441.t1;Parent=MS.gene049441.t1 |
| chr3.3 | exon | 77782357 | 77782458 | 77782357 | ID=MS.gene049441.t1.exon12;Parent=MS.gene049441.t1 |
| chr3.3 | CDS | 77782357 | 77782458 | 77782357 | ID=cds.MS.gene049441.t1;Parent=MS.gene049441.t1 |
| Gene Sequence |
| Protein sequence |
