Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066092.t1 | XP_003609006.1 | 97.8 | 226 | 5 | 0 | 2 | 227 | 19 | 244 | 1.80E-123 | 451.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066092.t1 | Q9SRH5 | 42.3 | 201 | 107 | 3 | 29 | 227 | 83 | 276 | 5.0e-37 | 156.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066092.t1 | G7JPX4 | 97.8 | 226 | 5 | 0 | 2 | 227 | 19 | 244 | 1.3e-123 | 451.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054713 | MS.gene066092 | 0.881658 | 2.00E-70 | -1.69E-46 |
| MS.gene055860 | MS.gene066092 | 0.824217 | 9.10E-54 | -1.69E-46 |
| MS.gene058042 | MS.gene066092 | 0.986465 | 7.05E-167 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 64 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCCGGCGAAATGGATTT+TGG | 0.152016 | 8.1:+16984981 | MS.gene066092:CDS |
| ACTGGATGCATTGGATTATT+AGG | 0.191506 | 8.1:+16984391 | MS.gene066092:CDS |
| CTCTCATTCAACAAGGATTT+TGG | 0.192793 | 8.1:+16984940 | MS.gene066092:CDS |
| CGAGCCTTTAGCAATGTTTC+AGG | 0.209136 | 8.1:-16984891 | None:intergenic |
| TTGCAATGGCCGTCTGGGTT+AGG | 0.244222 | 8.1:-16984800 | None:intergenic |
| AATAGATTCACTGGGATTAC+TGG | 0.244615 | 8.1:+16984373 | MS.gene066092:CDS |
| CTTGTGTTGCAATGGCCGTC+TGG | 0.310688 | 8.1:-16984806 | None:intergenic |
| TGCAATGGCCGTCTGGGTTA+GGG | 0.312768 | 8.1:-16984799 | None:intergenic |
| TCACTTTCACTACCAATTCA+TGG | 0.317926 | 8.1:+16983418 | MS.gene066092:CDS |
| AAGAAATTCTACCTGGATTC+AGG | 0.317980 | 8.1:+16984183 | MS.gene066092:CDS |
| GACCCTGTTGTAAAATTATC+AGG | 0.320742 | 8.1:+16984433 | MS.gene066092:CDS |
| ACAGAATGCTTGTTCCTAAA+AGG | 0.329840 | 8.1:-16984456 | None:intergenic |
| GGGGTTTACTTCATGATAAA+TGG | 0.338544 | 8.1:-16984778 | None:intergenic |
| AAAGGCTCGCTTTGACAGTT+CGG | 0.382952 | 8.1:+16984905 | MS.gene066092:CDS |
| CTGCATTCCAATCCATGAAT+TGG | 0.405723 | 8.1:-16983430 | None:intergenic |
| TGTAACTATGGCCGGCGAAA+TGG | 0.408333 | 8.1:+16984974 | MS.gene066092:CDS |
| AAGGCTCGCTTTGACAGTTC+GGG | 0.409065 | 8.1:+16984906 | MS.gene066092:CDS |
| TTCACTACCAATTCATGGAT+TGG | 0.415231 | 8.1:+16983423 | MS.gene066092:CDS |
| AATGGTACCTTCCCGGAGTC+TGG | 0.421783 | 8.1:-16984227 | None:intergenic |
| ACCAAGTTGACTGCTGGCTT+CGG | 0.424833 | 8.1:+16984523 | MS.gene066092:CDS |
| GCAAGGCAACATTGGCTCCT+AGG | 0.425523 | 8.1:-16984480 | None:intergenic |
| CAATTCATGGATTGGAATGC+AGG | 0.439436 | 8.1:+16983431 | MS.gene066092:CDS |
| ACAAAGTAATGGTACCTTCC+CGG | 0.441553 | 8.1:-16984234 | None:intergenic |
| AGCTTGTCACTCAAGGAAAC+TGG | 0.442221 | 8.1:+16984837 | MS.gene066092:CDS |
| ACTGGGATTACTGGATGCAT+TGG | 0.448328 | 8.1:+16984382 | MS.gene066092:CDS |
| CAGGGTCATATGCTCCATCT+TGG | 0.460843 | 8.1:-16984417 | None:intergenic |
| ACAAGGTCAATGAAGCTTCA+AGG | 0.465289 | 8.1:-16984561 | None:intergenic |
| GCCATGGAGACTCCAACCTT+TGG | 0.474824 | 8.1:-16985023 | None:intergenic |
| CAGTACTTGAATAGATTCAC+TGG | 0.475573 | 8.1:+16984364 | MS.gene066092:CDS |
| AACTTGGTTATCGATCTTGT+TGG | 0.497298 | 8.1:-16984508 | None:intergenic |
| TTTGACAGTTCGGGCAAAGT+AGG | 0.498953 | 8.1:+16984915 | MS.gene066092:CDS |
| GCAATGGCCGTCTGGGTTAG+GGG | 0.501382 | 8.1:-16984798 | None:intergenic |
| CAAGGCAACATTGGCTCCTA+GGG | 0.505987 | 8.1:-16984479 | None:intergenic |
| TTTATTAGATTGTCTTTACA+AGG | 0.506198 | 8.1:+16983373 | None:intergenic |
| GCCGAAGCCAGCAGTCAACT+TGG | 0.507792 | 8.1:-16984524 | None:intergenic |
| AATTGGTAGTGAAAGTGAAT+AGG | 0.508379 | 8.1:-16983413 | None:intergenic |
| TTGTGTTGCAATGGCCGTCT+GGG | 0.533482 | 8.1:-16984805 | None:intergenic |
| GGAACAAGCATTCTGTCCCT+AGG | 0.535981 | 8.1:+16984463 | MS.gene066092:CDS |
| AAGGAAACTGGTGTCACCAT+TGG | 0.538400 | 8.1:+16984849 | MS.gene066092:CDS |
| AAATGTACCGTACCAGACTC+CGG | 0.544121 | 8.1:+16984215 | MS.gene066092:CDS |
| CAATGGCCGTCTGGGTTAGG+GGG | 0.545151 | 8.1:-16984797 | None:intergenic |
| TTGAAAACAGTCCTGAATCC+AGG | 0.545165 | 8.1:-16984194 | None:intergenic |
| ACAGTTCAAGAAATTCTACC+TGG | 0.548340 | 8.1:+16984176 | MS.gene066092:intron |
| TCGATAACCAAGTTGACTGC+TGG | 0.549363 | 8.1:+16984517 | MS.gene066092:CDS |
| GGCCCCAAAATCCATTTCGC+CGG | 0.561250 | 8.1:-16984985 | None:intergenic |
| CGATCTTGTTGGTATGTGCA+AGG | 0.562305 | 8.1:-16984497 | None:intergenic |
| AACCTTTGGAATCTTATCAT+CGG | 0.566666 | 8.1:-16985009 | None:intergenic |
| AAATGCATGCTGAGCACCAA+TGG | 0.571123 | 8.1:-16984865 | None:intergenic |
| AATGCAGGCTTCTCATGTAA+AGG | 0.571808 | 8.1:+16983446 | MS.gene066092:CDS |
| GGATTATTAGGAAACCAAGA+TGG | 0.572580 | 8.1:+16984403 | MS.gene066092:CDS |
| TCCAAAGGTTGGAGTCTCCA+TGG | 0.577690 | 8.1:+16985022 | MS.gene066092:CDS |
| ATGCTTCACTTGTGTTGCAA+TGG | 0.577920 | 8.1:-16984814 | None:intergenic |
| GATGATAAGATTCCAAAGGT+TGG | 0.579129 | 8.1:+16985011 | MS.gene066092:CDS |
| AGATTAGGGTCTTAGAGCCA+TGG | 0.589733 | 8.1:-16985039 | None:intergenic |
| AATGTACCGTACCAGACTCC+GGG | 0.592748 | 8.1:+16984216 | MS.gene066092:CDS |
| CTTTGGAATCTTATCATCGG+TGG | 0.598433 | 8.1:-16985006 | None:intergenic |
| GAAGCATAGCTTGTCACTCA+AGG | 0.598774 | 8.1:+16984830 | MS.gene066092:CDS |
| TACCTTCCCGGAGTCTGGTA+CGG | 0.603084 | 8.1:-16984222 | None:intergenic |
| GGTCAATGAAGCTTCAAGGA+AGG | 0.612698 | 8.1:-16984557 | None:intergenic |
| AGTACTTGAATAGATTCACT+GGG | 0.614520 | 8.1:+16984365 | MS.gene066092:CDS |
| TGGTATGTGCAAGGCAACAT+TGG | 0.624437 | 8.1:-16984488 | None:intergenic |
| CACCGATGATAAGATTCCAA+AGG | 0.660499 | 8.1:+16985007 | MS.gene066092:CDS |
| TACCGTACCAGACTCCGGGA+AGG | 0.677553 | 8.1:+16984220 | MS.gene066092:CDS |
| GTAGGTGCTCTCATTCAACA+AGG | 0.711960 | 8.1:+16984933 | MS.gene066092:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCACATTATTTAAATCA+AGG | + | chr8.1:16983809-16983828 | MS.gene066092:intron | 15.0% |
| !! | TATCACATTATTTAAATCAA+GGG | + | chr8.1:16983810-16983829 | MS.gene066092:intron | 15.0% |
| !! | TTAAATATTTCATATTATGC+AGG | + | chr8.1:16984727-16984746 | MS.gene066092:intron | 15.0% |
| !!! | ATTTTTCTGATAAATTTAGT+CGG | - | chr8.1:16984609-16984628 | None:intergenic | 15.0% |
| !!! | TACTTTTATTTTTCTACTTA+TGG | + | chr8.1:16983580-16983599 | MS.gene066092:intron | 15.0% |
| !!! | TTTCTATACATATTTCTAAA+CGG | - | chr8.1:16984035-16984054 | None:intergenic | 15.0% |
| !! | AATTTATCAGAAAAATGGAT+AGG | + | chr8.1:16984613-16984632 | MS.gene066092:intron | 20.0% |
| !! | GACTAAATTTATCAGAAAAA+TGG | + | chr8.1:16984608-16984627 | MS.gene066092:intron | 20.0% |
| !! | TGATACTATACATAGTATAT+AGG | - | chr8.1:16984265-16984284 | None:intergenic | 20.0% |
| ! | AAAGATAGAAAATGGAATGA+TGG | - | chr8.1:16983755-16983774 | None:intergenic | 25.0% |
| ! | AAGATAGAAAATGGAATGAT+GGG | - | chr8.1:16983754-16983773 | None:intergenic | 25.0% |
| ! | AGACTACAAAAGATAGAAAA+TGG | - | chr8.1:16983763-16983782 | None:intergenic | 25.0% |
| ! | ATATCAACTTAGCTTATGTT+TGG | + | chr8.1:16983477-16983496 | MS.gene066092:intron | 25.0% |
| ! | CAATCTTCATTTCATATGAT+TGG | + | chr8.1:16983944-16983963 | MS.gene066092:intron | 25.0% |
| ! | GAGAAAGTTTGAAAAATTTG+AGG | - | chr8.1:16983732-16983751 | None:intergenic | 25.0% |
| ! | TAGAATTTCTTGAACTGTAA+TGG | - | chr8.1:16984174-16984193 | None:intergenic | 25.0% |
| ! | TATAGGTAAGTACAAAGTAA+TGG | - | chr8.1:16984248-16984267 | None:intergenic | 25.0% |
| ! | TATGAATTCATTGTGATTTG+AGG | - | chr8.1:16984334-16984353 | None:intergenic | 25.0% |
| ! | TCAAATCACAATGAATTCAT+AGG | + | chr8.1:16984333-16984352 | MS.gene066092:intron | 25.0% |
| !! | AGGGTTCTAATAAATTAACA+TGG | - | chr8.1:16984096-16984115 | None:intergenic | 25.0% |
| !! | CATTGAATGGTATTTTGTTA+TGG | - | chr8.1:16983869-16983888 | None:intergenic | 25.0% |
| !!! | TATGATGGATATATCTTACA+AGG | - | chr8.1:16984581-16984600 | None:intergenic | 25.0% |
| AATCACAATGAATTCATAGG+TGG | + | chr8.1:16984336-16984355 | MS.gene066092:intron | 30.0% | |
| ACTTCCAACAGAATAACATT+TGG | - | chr8.1:16983634-16983653 | None:intergenic | 30.0% | |
| AGTACTTGAATAGATTCACT+GGG | + | chr8.1:16984365-16984384 | MS.gene066092:CDS | 30.0% | |
| ATGTATGTGAAGTCATTGAA+TGG | - | chr8.1:16983882-16983901 | None:intergenic | 30.0% | |
| ATGTTATTCTGTTGGAAGTA+TGG | + | chr8.1:16983635-16983654 | MS.gene066092:intron | 30.0% | |
| ATTTAGTCGGTAGTTTATGA+TGG | - | chr8.1:16984596-16984615 | None:intergenic | 30.0% | |
| CACATTATTTAAATCAAGGG+TGG | + | chr8.1:16983813-16983832 | MS.gene066092:intron | 30.0% | |
| TAAAAGATTAAGCCTCTGTT+TGG | - | chr8.1:16983562-16983581 | None:intergenic | 30.0% | |
| TATTAGAACCCTGAATGAAA+TGG | + | chr8.1:16984104-16984123 | MS.gene066092:intron | 30.0% | |
| TTAGCCAAATGTTATTCTGT+TGG | + | chr8.1:16983627-16983646 | MS.gene066092:intron | 30.0% | |
| ! | GTAAAATTATCAGGCCTTTT+AGG | + | chr8.1:16984442-16984461 | MS.gene066092:CDS | 30.0% |
| ! | TTTTCCTGAAACATTGCTAA+AGG | + | chr8.1:16984887-16984906 | MS.gene066092:CDS | 30.0% |
| !! | AACCTTTGGAATCTTATCAT+CGG | - | chr8.1:16985012-16985031 | None:intergenic | 30.0% |
| !! | AATTGGTAGTGAAAGTGAAT+AGG | - | chr8.1:16983416-16983435 | None:intergenic | 30.0% |
| !!! | AGATTTTTTGTAACTATGGC+CGG | + | chr8.1:16984966-16984985 | MS.gene066092:CDS | 30.0% |
| !!! | GCAGAGATTTTTTGTAACTA+TGG | + | chr8.1:16984962-16984981 | MS.gene066092:CDS | 30.0% |
| AACTTGGTTATCGATCTTGT+TGG | - | chr8.1:16984511-16984530 | None:intergenic | 35.0% | |
| AAGAAATTCTACCTGGATTC+AGG | + | chr8.1:16984183-16984202 | MS.gene066092:CDS | 35.0% | |
| AATAGATTCACTGGGATTAC+TGG | + | chr8.1:16984373-16984392 | MS.gene066092:CDS | 35.0% | |
| ACAGAATGCTTGTTCCTAAA+AGG | - | chr8.1:16984459-16984478 | None:intergenic | 35.0% | |
| ACAGTTCAAGAAATTCTACC+TGG | + | chr8.1:16984176-16984195 | MS.gene066092:intron | 35.0% | |
| ACTGGATGCATTGGATTATT+AGG | + | chr8.1:16984391-16984410 | MS.gene066092:CDS | 35.0% | |
| CAGTACTTGAATAGATTCAC+TGG | + | chr8.1:16984364-16984383 | MS.gene066092:CDS | 35.0% | |
| GACCCTGTTGTAAAATTATC+AGG | + | chr8.1:16984433-16984452 | MS.gene066092:CDS | 35.0% | |
| GATGATAAGATTCCAAAGGT+TGG | + | chr8.1:16985011-16985030 | MS.gene066092:CDS | 35.0% | |
| GGATTATTAGGAAACCAAGA+TGG | + | chr8.1:16984403-16984422 | MS.gene066092:CDS | 35.0% | |
| GGGGTTTACTTCATGATAAA+TGG | - | chr8.1:16984781-16984800 | None:intergenic | 35.0% | |
| TCACTTTCACTACCAATTCA+TGG | + | chr8.1:16983418-16983437 | MS.gene066092:CDS | 35.0% | |
| TGGCATCTAAATTTGCACTT+AGG | + | chr8.1:16983964-16983983 | MS.gene066092:intron | 35.0% | |
| TTCACTACCAATTCATGGAT+TGG | + | chr8.1:16983423-16983442 | MS.gene066092:CDS | 35.0% | |
| TTTAGACTGCAAGAATGAGA+AGG | + | chr8.1:16983525-16983544 | MS.gene066092:intron | 35.0% | |
| ! | AGGCCTGATAATTTTACAAC+AGG | - | chr8.1:16984439-16984458 | None:intergenic | 35.0% |
| ! | AGGTAATGCCATTTCATTCA+GGG | - | chr8.1:16984115-16984134 | None:intergenic | 35.0% |
| ! | CTCTCATTCAACAAGGATTT+TGG | + | chr8.1:16984940-16984959 | MS.gene066092:CDS | 35.0% |
| ! | GGCCTGATAATTTTACAACA+GGG | - | chr8.1:16984438-16984457 | None:intergenic | 35.0% |
| ! | TTAGCTTATGTTTGGAACTG+CGG | + | chr8.1:16983485-16983504 | MS.gene066092:intron | 35.0% |
| AATGCAGGCTTCTCATGTAA+AGG | + | chr8.1:16983446-16983465 | MS.gene066092:CDS | 40.0% | |
| ACAAAGTAATGGTACCTTCC+CGG | - | chr8.1:16984237-16984256 | None:intergenic | 40.0% | |
| ACAAGGTCAATGAAGCTTCA+AGG | - | chr8.1:16984564-16984583 | None:intergenic | 40.0% | |
| ACATGGCTCTCATTTGTTTG+TGG | - | chr8.1:16984079-16984098 | None:intergenic | 40.0% | |
| AGAAACAGTTTAGCCCTCAA+AGG | + | chr8.1:16984050-16984069 | MS.gene066092:intron | 40.0% | |
| ATGCTTCACTTGTGTTGCAA+TGG | - | chr8.1:16984817-16984836 | None:intergenic | 40.0% | |
| CACCGATGATAAGATTCCAA+AGG | + | chr8.1:16985007-16985026 | MS.gene066092:CDS | 40.0% | |
| CTGCATTCCAATCCATGAAT+TGG | - | chr8.1:16983433-16983452 | None:intergenic | 40.0% | |
| TTGAAAACAGTCCTGAATCC+AGG | - | chr8.1:16984197-16984216 | None:intergenic | 40.0% | |
| TTGTTTGTGGAGACCTTTGA+GGG | - | chr8.1:16984066-16984085 | None:intergenic | 40.0% | |
| TTTGTTTGTGGAGACCTTTG+AGG | - | chr8.1:16984067-16984086 | None:intergenic | 40.0% | |
| ! | CAGGTAATGCCATTTCATTC+AGG | - | chr8.1:16984116-16984135 | None:intergenic | 40.0% |
| !! | CAATTCATGGATTGGAATGC+AGG | + | chr8.1:16983431-16983450 | MS.gene066092:CDS | 40.0% |
| !! | CTTTGGAATCTTATCATCGG+TGG | - | chr8.1:16985009-16985028 | None:intergenic | 40.0% |
| AAAGGCTCGCTTTGACAGTT+CGG | + | chr8.1:16984905-16984924 | MS.gene066092:CDS | 45.0% | |
| AAATGCATGCTGAGCACCAA+TGG | - | chr8.1:16984868-16984887 | None:intergenic | 45.0% | |
| AAATGTACCGTACCAGACTC+CGG | + | chr8.1:16984215-16984234 | MS.gene066092:CDS | 45.0% | |
| ACTGGGATTACTGGATGCAT+TGG | + | chr8.1:16984382-16984401 | MS.gene066092:CDS | 45.0% | |
| AGCTTGTCACTCAAGGAAAC+TGG | + | chr8.1:16984837-16984856 | MS.gene066092:CDS | 45.0% | |
| CGAGCCTTTAGCAATGTTTC+AGG | - | chr8.1:16984894-16984913 | None:intergenic | 45.0% | |
| CGATCTTGTTGGTATGTGCA+AGG | - | chr8.1:16984500-16984519 | None:intergenic | 45.0% | |
| GGTCAATGAAGCTTCAAGGA+AGG | - | chr8.1:16984560-16984579 | None:intergenic | 45.0% | |
| GTAGGTGCTCTCATTCAACA+AGG | + | chr8.1:16984933-16984952 | MS.gene066092:CDS | 45.0% | |
| TGGTATGTGCAAGGCAACAT+TGG | - | chr8.1:16984491-16984510 | None:intergenic | 45.0% | |
| TTTGACAGTTCGGGCAAAGT+AGG | + | chr8.1:16984915-16984934 | MS.gene066092:CDS | 45.0% | |
| ! | ATGTTTGGAACTGCGGTGAT+CGG | + | chr8.1:16983492-16983511 | MS.gene066092:intron | 45.0% |
| ! | GAAGCATAGCTTGTCACTCA+AGG | + | chr8.1:16984830-16984849 | MS.gene066092:CDS | 45.0% |
| ! | TCGATAACCAAGTTGACTGC+TGG | + | chr8.1:16984517-16984536 | MS.gene066092:CDS | 45.0% |
| !! | AAGGAAACTGGTGTCACCAT+TGG | + | chr8.1:16984849-16984868 | MS.gene066092:CDS | 45.0% |
| AAGGCTCGCTTTGACAGTTC+GGG | + | chr8.1:16984906-16984925 | MS.gene066092:CDS | 50.0% | |
| AATGTACCGTACCAGACTCC+GGG | + | chr8.1:16984216-16984235 | MS.gene066092:CDS | 50.0% | |
| ACTACAGTCAGACATGCTGC+AGG | - | chr8.1:16984135-16984154 | None:intergenic | 50.0% | |
| AGTAAACCCCCTAACCCAGA+CGG | + | chr8.1:16984791-16984810 | MS.gene066092:CDS | 50.0% | |
| CAAGAATGAGAAGGCTACCG+CGG | + | chr8.1:16983534-16983553 | MS.gene066092:intron | 50.0% | |
| CAGGGTCATATGCTCCATCT+TGG | - | chr8.1:16984420-16984439 | None:intergenic | 50.0% | |
| GGAACAAGCATTCTGTCCCT+AGG | + | chr8.1:16984463-16984482 | MS.gene066092:CDS | 50.0% | |
| TAAGCCTCTGTTTGGATCCG+CGG | - | chr8.1:16983554-16983573 | None:intergenic | 50.0% | |
| TCCAAAGGTTGGAGTCTCCA+TGG | + | chr8.1:16985022-16985041 | MS.gene066092:CDS | 50.0% | |
| TGTAACTATGGCCGGCGAAA+TGG | + | chr8.1:16984974-16984993 | MS.gene066092:CDS | 50.0% | |
| TTGTGTTGCAATGGCCGTCT+GGG | - | chr8.1:16984808-16984827 | None:intergenic | 50.0% | |
| !! | ACCAAGTTGACTGCTGGCTT+CGG | + | chr8.1:16984523-16984542 | MS.gene066092:CDS | 50.0% |
| !! | ATGGCCGGCGAAATGGATTT+TGG | + | chr8.1:16984981-16985000 | MS.gene066092:CDS | 50.0% |
| !! | CAAGGCAACATTGGCTCCTA+GGG | - | chr8.1:16984482-16984501 | None:intergenic | 50.0% |
| !! | TGGCCGGCGAAATGGATTTT+GGG | + | chr8.1:16984982-16985001 | MS.gene066092:CDS | 50.0% |
| AATGGTACCTTCCCGGAGTC+TGG | - | chr8.1:16984230-16984249 | None:intergenic | 55.0% | |
| CTTGTGTTGCAATGGCCGTC+TGG | - | chr8.1:16984809-16984828 | None:intergenic | 55.0% | |
| GCCATGGAGACTCCAACCTT+TGG | - | chr8.1:16985026-16985045 | None:intergenic | 55.0% | |
| GGCCCCAAAATCCATTTCGC+CGG | - | chr8.1:16984988-16985007 | None:intergenic | 55.0% | |
| TACCTTCCCGGAGTCTGGTA+CGG | - | chr8.1:16984225-16984244 | None:intergenic | 55.0% | |
| TGCAATGGCCGTCTGGGTTA+GGG | - | chr8.1:16984802-16984821 | None:intergenic | 55.0% | |
| TTGCAATGGCCGTCTGGGTT+AGG | - | chr8.1:16984803-16984822 | None:intergenic | 55.0% | |
| !! | GCAAGGCAACATTGGCTCCT+AGG | - | chr8.1:16984483-16984502 | None:intergenic | 55.0% |
| !! | GGCCGGCGAAATGGATTTTG+GGG | + | chr8.1:16984983-16985002 | MS.gene066092:CDS | 55.0% |
| GCCGAAGCCAGCAGTCAACT+TGG | - | chr8.1:16984527-16984546 | None:intergenic | 60.0% | |
| GCTACCGCGGATCCAAACAG+AGG | + | chr8.1:16983547-16983566 | MS.gene066092:intron | 60.0% | |
| TACCGTACCAGACTCCGGGA+AGG | + | chr8.1:16984220-16984239 | MS.gene066092:CDS | 60.0% | |
| ! | CAATGGCCGTCTGGGTTAGG+GGG | - | chr8.1:16984800-16984819 | None:intergenic | 60.0% |
| ! | GCAATGGCCGTCTGGGTTAG+GGG | - | chr8.1:16984801-16984820 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 16983381 | 16985058 | 16983381 | ID=MS.gene066092 |
| chr8.1 | mRNA | 16983381 | 16985058 | 16983381 | ID=MS.gene066092.t1;Parent=MS.gene066092 |
| chr8.1 | exon | 16983381 | 16983467 | 16983381 | ID=MS.gene066092.t1.exon1;Parent=MS.gene066092.t1 |
| chr8.1 | CDS | 16983381 | 16983467 | 16983381 | ID=cds.MS.gene066092.t1;Parent=MS.gene066092.t1 |
| chr8.1 | exon | 16984180 | 16984241 | 16984180 | ID=MS.gene066092.t1.exon2;Parent=MS.gene066092.t1 |
| chr8.1 | CDS | 16984180 | 16984241 | 16984180 | ID=cds.MS.gene066092.t1;Parent=MS.gene066092.t1 |
| chr8.1 | exon | 16984355 | 16984581 | 16984355 | ID=MS.gene066092.t1.exon3;Parent=MS.gene066092.t1 |
| chr8.1 | CDS | 16984355 | 16984581 | 16984355 | ID=cds.MS.gene066092.t1;Parent=MS.gene066092.t1 |
| chr8.1 | exon | 16984749 | 16985058 | 16984749 | ID=MS.gene066092.t1.exon4;Parent=MS.gene066092.t1 |
| chr8.1 | CDS | 16984749 | 16985058 | 16984749 | ID=cds.MS.gene066092.t1;Parent=MS.gene066092.t1 |
| Gene Sequence |
| Protein sequence |
