AlfalfaGEDB | MS.gene054713

M. sativa cultivar XinJiangDaYe / MS.gene054713

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054713.t1	AES97097.1	97.7	261	6	0	1	261	1	261	6.30E-144	520

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054713.t1	G7JZ18	97.7	261	6	0	1	261	1	261	4.6e-144	520.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051860	MS.gene054713	0.816031	6.82E-52	-1.69E-46
MS.gene05288	MS.gene054713	0.817646	2.96E-52	-1.69E-46
MS.gene05289	MS.gene054713	0.805691	1.18E-49	-1.69E-46
MS.gene053184	MS.gene054713	0.804708	1.90E-49	-1.69E-46
MS.gene054713	MS.gene055358	0.800773	1.23E-48	-1.69E-46
MS.gene054713	MS.gene055860	0.824152	9.42E-54	-1.69E-46
MS.gene054713	MS.gene058042	0.884885	1.31E-71	-1.69E-46
MS.gene054713	MS.gene059609	0.8049	1.73E-49	-1.69E-46
MS.gene054713	MS.gene061114	-0.803851	2.86E-49	-1.69E-46
MS.gene054713	MS.gene061333	0.819919	9.02E-53	-1.69E-46

Showing 1 to 10 of 91 entries

Previous1 2 3 4 5…10Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054713.t1	MTR_5g045300	97.701	261	6	0	1	261	1	261	0.0	519

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 47 sgRNAs with CRISPR-Local

Find 56 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCAAGGATACATATTGAG+AGG	0.635812	5.3:+32844343	None:intergenic
AAGTAAAGGAGGTTCGTAAA+AGG	0.385552	5.3:+32843939	None:intergenic
AATGTAGCAATCCAATAACA+AGG	0.681282	5.3:+32844076	None:intergenic
AATTTGAAGTATAAACTTAG+TGG	0.421521	5.3:+32844249	None:intergenic
ACAGATACCACTTGAAGAGA+AGG	0.584939	5.3:-32843713	MS.gene054713:CDS
ACTATGTCTTGAGAAGAAAC+TGG	0.491172	5.3:+32843913	None:intergenic
AGATGACAAGAAAGAGTCCA+AGG	0.595725	5.3:-32843656	MS.gene054713:CDS
AGCCTTCATTCATGAAAGCA+AGG	0.601961	5.3:+32844328	None:intergenic
AGCTATATCTTGGGTTAGTT+TGG	0.236897	5.3:-32843788	MS.gene054713:CDS
AGTACCCTCTTTAGTTTATT+GGG	0.199150	5.3:-32844181	MS.gene054713:CDS

Showing 1 to 10 of 47 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATGTAGCAATCCAATAACA+AGG	+	chr5.3:32843932-32843951	None:intergenic	30.0%
GATCGTAAGATTAAACTCAA+AGG	-	chr5.3:32843996-32844015	MS.gene054713:CDS	30.0%
TAAGATTAAACTCAAAGGGT+TGG	-	chr5.3:32844001-32844020	MS.gene054713:CDS	30.0%
TTTCCCAATACCAATCTAAT+GGG	+	chr5.3:32843863-32843882	None:intergenic	30.0%
AAGCAAGGATACATATTGAG+AGG	+	chr5.3:32843665-32843684	None:intergenic	35.0%
AAGTAAAGGAGGTTCGTAAA+AGG	+	chr5.3:32844069-32844088	None:intergenic	35.0%
ACTATGTCTTGAGAAGAAAC+TGG	+	chr5.3:32844095-32844114	None:intergenic	35.0%
ATAGCTTCGTCAATGAACAA+TGG	-	chr5.3:32843715-32843734	MS.gene054713:CDS	35.0%
ATCCTTGCTTTCATGAATGA+AGG	-	chr5.3:32843675-32843694	MS.gene054713:CDS	35.0%
CAGATTTACACACATGATGT+TGG	-	chr5.3:32844191-32844210	MS.gene054713:CDS	35.0%

Showing 1 to 10 of 56 entries

Previous1 2 3 4 5 6Next

Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	32843621	32844406	32843621	ID=MS.gene054713
chr5.3	mRNA	32843621	32844406	32843621	ID=MS.gene054713.t1;Parent=MS.gene054713
chr5.3	exon	32843621	32844406	32843621	ID=MS.gene054713.t1.exon1;Parent=MS.gene054713.t1
chr5.3	CDS	32843621	32844406	32843621	ID=cds.MS.gene054713.t1;Parent=MS.gene054713.t1

Gene Sequence

>MS.gene054713

ATGGGTTTTCAAGGGCCTGATATTGAAAAGTTCATTCATTTCCTCTCAATATGTATCCTTGCTTTCATGAATGAAGGCTCCTCCTCACTCTCTAATAGCTTCGTCAATGAACAATGGTCATGGGGTCTAAGTATTCCACTAAGTTTATACTTCAAATTTGCACTTGAGTGTCATGCTCATTTTGGAATCTTTGTTGGGATTGGAGTACCCTCTTTAGTTTATTGGGGTGCAACTCGCAGCCCATTAGATTGGTATTGGGAAACAGTGATCAAATTCAATGTTGAAATTTTGAAAACTGGTTTCTTCAACCTTGTTATTGGATTGCTACATTTAGTTGTCTCGAAATTGCTCAATCGTTTAATTGAGTGGATACATGATCGTAAGATTAAACTCAAAGGGTTGGATTTTCTTTTCCCTAAGAAAAATTCAGAGTTGGAAAATTCAACCTTTTACGAACCTCCTTTACTTAGGCCAGTTTCTTCTCAAGACATAGTATTGAAACTTGTTGAAGCACTTATTTCCTTATTCTTTAATGGAAATGTATTGCTTTTAAGTTGGTGTTTTTCTGGACAGATTTACACACATGATGTTGGTAAAGCTATATCTTGGGTTAGTTTGGGAAGTTCTATGTTTGTGTGGATTAAGGCTTTACTTAAGCTAATGAAAATGCCACAGATACCACTTGAAGAGAAGGCACACAAGATTGACAAGAATCAAAATTGTTCTATAGATGACAAGAAAGAGTCCAAGGATCAAGAACTAGTTACATGCTCATTAGAATGTTGA

Protein sequence

>MS.gene054713.t1

MGFQGPDIEKFIHFLSICILAFMNEGSSSLSNSFVNEQWSWGLSIPLSLYFKFALECHAHFGIFVGIGVPSLVYWGATRSPLDWYWETVIKFNVEILKTGFFNLVIGLLHLVVSKLLNRLIEWIHDRKIKLKGLDFLFPKKNSELENSTFYEPPLLRPVSSQDIVLKLVEALISLFFNGNVLLLSWCFSGQIYTHDVGKAISWVSLGSSMFVWIKALLKLMKMPQIPLEEKAHKIDKNQNCSIDDKKESKDQELVTCSLEC