Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058042.t1 | XP_003609006.1 | 97.1 | 244 | 7 | 0 | 1 | 244 | 1 | 244 | 2.80E-133 | 484.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058042.t1 | Q9SRH5 | 35.7 | 283 | 136 | 5 | 1 | 244 | 1 | 276 | 2.0e-39 | 164.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058042.t1 | G7JPX4 | 97.1 | 244 | 7 | 0 | 1 | 244 | 1 | 244 | 2.0e-133 | 484.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054713 | MS.gene058042 | 0.884885 | 1.31E-71 | -1.69E-46 |
| MS.gene055860 | MS.gene058042 | 0.823938 | 1.06E-53 | -1.69E-46 |
| MS.gene058042 | MS.gene064798 | 0.84036 | 9.12E-58 | -1.69E-46 |
| MS.gene058042 | MS.gene065054 | 0.855691 | 5.32E-62 | -1.69E-46 |
| MS.gene058042 | MS.gene065988 | 0.874014 | 9.40E-68 | -1.69E-46 |
| MS.gene058042 | MS.gene066092 | 0.986465 | 7.05E-167 | -1.69E-46 |
| MS.gene058042 | MS.gene066094 | 0.985236 | 6.09E-163 | -1.69E-46 |
| MS.gene058042 | MS.gene066098 | 0.986205 | 5.14E-166 | -1.69E-46 |
| MS.gene058042 | MS.gene069088 | 0.848483 | 5.96E-60 | -1.69E-46 |
| MS.gene058042 | MS.gene26752 | 0.811505 | 6.77E-51 | -1.69E-46 |
| MS.gene058042 | MS.gene27868 | 0.860121 | 2.58E-63 | -1.69E-46 |
| MS.gene058042 | MS.gene31520 | 0.830904 | 2.26E-55 | -1.69E-46 |
| MS.gene058042 | MS.gene34936 | -0.811355 | 7.30E-51 | -1.69E-46 |
| MS.gene058042 | MS.gene38772 | 0.813453 | 2.54E-51 | -1.69E-46 |
| MS.gene058042 | MS.gene43800 | 0.856691 | 2.71E-62 | -1.69E-46 |
| MS.gene058042 | MS.gene44897 | 0.825752 | 3.95E-54 | -1.69E-46 |
| MS.gene058042 | MS.gene47283 | 0.826699 | 2.35E-54 | -1.69E-46 |
| MS.gene058042 | MS.gene49839 | 0.857508 | 1.56E-62 | -1.69E-46 |
| MS.gene058042 | MS.gene51052 | 0.975487 | 4.83E-140 | -1.69E-46 |
| MS.gene058042 | MS.gene51055 | 0.973702 | 7.06E-137 | -1.69E-46 |
| MS.gene058042 | MS.gene52801 | 0.817422 | 3.33E-52 | -1.69E-46 |
| MS.gene058042 | MS.gene55625 | 0.84802 | 8.00E-60 | -1.69E-46 |
| MS.gene058042 | MS.gene57944 | -0.810696 | 1.01E-50 | -1.69E-46 |
| MS.gene058042 | MS.gene59355 | 0.858381 | 8.57E-63 | -1.69E-46 |
| MS.gene058042 | MS.gene59442 | 0.877798 | 4.71E-69 | -1.69E-46 |
| MS.gene058042 | MS.gene61571 | 0.837913 | 3.93E-57 | -1.69E-46 |
| MS.gene058042 | MS.gene62778 | 0.823105 | 1.66E-53 | -1.69E-46 |
| MS.gene058042 | MS.gene62846 | 0.829389 | 5.29E-55 | -1.69E-46 |
| MS.gene058042 | MS.gene66291 | 0.818984 | 1.47E-52 | -1.69E-46 |
| MS.gene058042 | MS.gene68036 | 0.875455 | 3.04E-68 | -1.69E-46 |
| MS.gene058042 | MS.gene68582 | 0.873696 | 1.20E-67 | -1.69E-46 |
| MS.gene058042 | MS.gene69359 | 0.832289 | 1.03E-55 | -1.69E-46 |
| MS.gene058042 | MS.gene71889 | 0.878227 | 3.33E-69 | -1.69E-46 |
| MS.gene058042 | MS.gene72110 | 0.881156 | 3.03E-70 | -1.69E-46 |
| MS.gene058042 | MS.gene73257 | 0.85837 | 8.63E-63 | -1.69E-46 |
| MS.gene058042 | MS.gene74971 | 0.85735 | 1.73E-62 | -1.69E-46 |
| MS.gene058042 | MS.gene75127 | 0.807762 | 4.32E-50 | -1.69E-46 |
| MS.gene058042 | MS.gene76226 | 0.860137 | 2.55E-63 | -1.69E-46 |
| MS.gene058042 | MS.gene76373 | 0.84196 | 3.46E-58 | -1.69E-46 |
| MS.gene058042 | MS.gene87430 | 0.846219 | 2.49E-59 | -1.69E-46 |
| MS.gene058042 | MS.gene87897 | 0.875183 | 3.77E-68 | -1.69E-46 |
| MS.gene058042 | MS.gene88788 | 0.842783 | 2.09E-58 | -1.69E-46 |
| MS.gene058042 | MS.gene89109 | 0.804331 | 2.27E-49 | -1.69E-46 |
| MS.gene058042 | MS.gene92590 | 0.847391 | 1.19E-59 | -1.69E-46 |
| MS.gene058042 | MS.gene98071 | 0.907884 | 3.13E-81 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058042.t1 | MTR_4g107840 | 97.131 | 244 | 7 | 0 | 1 | 244 | 1 | 244 | 1.27e-179 | 493 |
| MS.gene058042.t1 | MTR_8g469150 | 34.982 | 283 | 138 | 5 | 1 | 244 | 1 | 276 | 6.97e-49 | 162 |
| MS.gene058042.t1 | MTR_7g009330 | 35.106 | 282 | 137 | 6 | 2 | 244 | 3 | 277 | 1.56e-47 | 159 |
| MS.gene058042.t1 | MTR_6g011390 | 34.035 | 285 | 140 | 6 | 1 | 244 | 1 | 278 | 2.27e-46 | 155 |
| MS.gene058042.t1 | MTR_8g469150 | 34.457 | 267 | 130 | 4 | 1 | 228 | 1 | 261 | 1.77e-45 | 153 |
| MS.gene058042.t1 | MTR_5g015580 | 26.855 | 283 | 161 | 5 | 1 | 244 | 1 | 276 | 8.60e-30 | 112 |
| MS.gene058042.t1 | MTR_1g018205 | 25.177 | 282 | 165 | 5 | 2 | 244 | 3 | 277 | 2.86e-24 | 98.2 |
| MS.gene058042.t1 | MTR_4g128300 | 24.742 | 291 | 160 | 5 | 1 | 244 | 1 | 279 | 4.11e-22 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058042.t1 | AT3G01280 | 35.689 | 283 | 136 | 6 | 1 | 244 | 1 | 276 | 1.14e-50 | 167 |
| MS.gene058042.t1 | AT5G15090 | 31.802 | 283 | 145 | 7 | 1 | 244 | 1 | 274 | 5.59e-41 | 142 |
| MS.gene058042.t1 | AT5G15090 | 31.802 | 283 | 145 | 7 | 1 | 244 | 1 | 274 | 5.59e-41 | 142 |
| MS.gene058042.t1 | AT5G67500 | 28.421 | 285 | 154 | 6 | 1 | 244 | 1 | 276 | 9.10e-32 | 118 |
| MS.gene058042.t1 | AT5G57490 | 27.682 | 289 | 149 | 7 | 1 | 244 | 1 | 274 | 1.24e-29 | 112 |
| MS.gene058042.t1 | AT5G67500 | 26.774 | 310 | 154 | 6 | 1 | 244 | 1 | 303 | 5.37e-28 | 108 |
| MS.gene058042.t1 | AT5G67500 | 27.509 | 269 | 146 | 5 | 1 | 228 | 1 | 261 | 4.85e-27 | 106 |
| MS.gene058042.t1 | AT3G49920 | 28.279 | 244 | 157 | 3 | 1 | 244 | 1 | 226 | 6.74e-19 | 82.8 |
Find 69 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCCGGCGAAATGGATTT+TGG | 0.152016 | 8.4:+19294812 | MS.gene058042:CDS |
| ACTGGATGCATTGGATTATT+AGG | 0.191506 | 8.4:+19294222 | MS.gene058042:CDS |
| CTCTCATTCAACAAGGATTT+TGG | 0.192793 | 8.4:+19294771 | MS.gene058042:CDS |
| CGAGCCTTTAGCAATGTTTC+AGG | 0.209136 | 8.4:-19294722 | None:intergenic |
| TTGCAATGGCCGTCTGGGTT+AGG | 0.244222 | 8.4:-19294631 | None:intergenic |
| AATAGATTCACTGGGATTAC+TGG | 0.244615 | 8.4:+19294204 | MS.gene058042:CDS |
| CTTGTGTTGCAATGGCCGTC+TGG | 0.310688 | 8.4:-19294637 | None:intergenic |
| TGCAATGGCCGTCTGGGTTA+GGG | 0.312768 | 8.4:-19294630 | None:intergenic |
| TCACTTTCACTACCAATTCA+TGG | 0.317926 | 8.4:+19293249 | MS.gene058042:CDS |
| AAGAAATTCTACCTGGATTC+AGG | 0.317980 | 8.4:+19294014 | MS.gene058042:CDS |
| GACCCTGTTGTAAAATTATC+AGG | 0.320742 | 8.4:+19294264 | MS.gene058042:CDS |
| ACAGAATGCTTGTTCCTAAA+AGG | 0.329840 | 8.4:-19294287 | None:intergenic |
| GGGGTTTACTTCATGATAAA+TGG | 0.338544 | 8.4:-19294609 | None:intergenic |
| AAAGGCTCGCTTTGACAGTT+CGG | 0.382952 | 8.4:+19294736 | MS.gene058042:CDS |
| CTGCATTCCAATCCATGAAT+TGG | 0.405723 | 8.4:-19293261 | None:intergenic |
| TGTAACTATGGCCGGCGAAA+TGG | 0.408333 | 8.4:+19294805 | MS.gene058042:CDS |
| AAGGCTCGCTTTGACAGTTC+GGG | 0.409065 | 8.4:+19294737 | MS.gene058042:CDS |
| TTCACTACCAATTCATGGAT+TGG | 0.415231 | 8.4:+19293254 | MS.gene058042:CDS |
| AATGGTACCTTCCCGGAGTC+TGG | 0.421783 | 8.4:-19294058 | None:intergenic |
| ACCAAGTTGACTGCTGGCTT+CGG | 0.424833 | 8.4:+19294354 | MS.gene058042:CDS |
| GCAAGGCAACATTGGCTCCT+AGG | 0.425523 | 8.4:-19294311 | None:intergenic |
| CCTGGTGTATATTCTAATCT+TGG | 0.430429 | 8.4:+19293073 | MS.gene058042:CDS |
| CAATTCATGGATTGGAATGC+AGG | 0.439436 | 8.4:+19293262 | MS.gene058042:CDS |
| ACAAAGTAATGGTACCTTCC+CGG | 0.441553 | 8.4:-19294065 | None:intergenic |
| ATATTCTAATCTTGGCGATA+AGG | 0.441721 | 8.4:+19293081 | MS.gene058042:CDS |
| AGCTTGTCACTCAAGGAAAC+TGG | 0.442221 | 8.4:+19294668 | MS.gene058042:CDS |
| ACTGGGATTACTGGATGCAT+TGG | 0.448328 | 8.4:+19294213 | MS.gene058042:CDS |
| CAGGGTCATATGCTCCATCT+TGG | 0.460843 | 8.4:-19294248 | None:intergenic |
| ACAAGGTCAATGAAGCTTCA+AGG | 0.465289 | 8.4:-19294392 | None:intergenic |
| GCCATGGAGACTCCAACCTT+TGG | 0.474824 | 8.4:-19294854 | None:intergenic |
| CAGTACTTGAATAGATTCAC+TGG | 0.475573 | 8.4:+19294195 | MS.gene058042:CDS |
| AACTTGGTTATCGATCTTGT+TGG | 0.497298 | 8.4:-19294339 | None:intergenic |
| TTTGACAGTTCGGGCAAAGT+AGG | 0.498953 | 8.4:+19294746 | MS.gene058042:CDS |
| AGCAAAATGAGCAAGAGTCC+TGG | 0.500833 | 8.4:+19293055 | None:intergenic |
| GCAATGGCCGTCTGGGTTAG+GGG | 0.501382 | 8.4:-19294629 | None:intergenic |
| CAAGGCAACATTGGCTCCTA+GGG | 0.505987 | 8.4:-19294310 | None:intergenic |
| TTTATTAGATTGTCTTTACA+AGG | 0.506198 | 8.4:+19293204 | MS.gene058042:intron |
| GCCGAAGCCAGCAGTCAACT+TGG | 0.507792 | 8.4:-19294355 | None:intergenic |
| AATTGGTAGTGAAAGTGAAT+AGG | 0.508379 | 8.4:-19293244 | None:intergenic |
| TTGTGTTGCAATGGCCGTCT+GGG | 0.533482 | 8.4:-19294636 | None:intergenic |
| GGAACAAGCATTCTGTCCCT+AGG | 0.535981 | 8.4:+19294294 | MS.gene058042:CDS |
| AAGGAAACTGGTGTCACCAT+TGG | 0.538400 | 8.4:+19294680 | MS.gene058042:CDS |
| AAATGTACCGTACCAGACTC+CGG | 0.544121 | 8.4:+19294046 | MS.gene058042:CDS |
| CAATGGCCGTCTGGGTTAGG+GGG | 0.545151 | 8.4:-19294628 | None:intergenic |
| TTGAAAACAGTCCTGAATCC+AGG | 0.545165 | 8.4:-19294025 | None:intergenic |
| ACAGTTCAAGAAATTCTACC+TGG | 0.548340 | 8.4:+19294007 | MS.gene058042:intron |
| TCGATAACCAAGTTGACTGC+TGG | 0.549363 | 8.4:+19294348 | MS.gene058042:CDS |
| GGCCCCAAAATCCATTTCGC+CGG | 0.561250 | 8.4:-19294816 | None:intergenic |
| CGATCTTGTTGGTATGTGCA+AGG | 0.562305 | 8.4:-19294328 | None:intergenic |
| AACCTTTGGAATCTTATCAT+CGG | 0.566666 | 8.4:-19294840 | None:intergenic |
| AAATGCATGCTGAGCACCAA+TGG | 0.571123 | 8.4:-19294696 | None:intergenic |
| AATGCAGGCTTCTCATGTAA+AGG | 0.571808 | 8.4:+19293277 | MS.gene058042:CDS |
| GGATTATTAGGAAACCAAGA+TGG | 0.572580 | 8.4:+19294234 | MS.gene058042:CDS |
| TCCAAAGGTTGGAGTCTCCA+TGG | 0.577690 | 8.4:+19294853 | MS.gene058042:CDS |
| ATGCTTCACTTGTGTTGCAA+TGG | 0.577920 | 8.4:-19294645 | None:intergenic |
| GATGATAAGATTCCAAAGGT+TGG | 0.579129 | 8.4:+19294842 | MS.gene058042:CDS |
| AATCTTGGCGATAAGGCCAA+AGG | 0.579547 | 8.4:+19293088 | MS.gene058042:CDS |
| AGATTAGGGTCTTAGAGCCA+TGG | 0.589733 | 8.4:-19294870 | None:intergenic |
| AATGTACCGTACCAGACTCC+GGG | 0.592748 | 8.4:+19294047 | MS.gene058042:CDS |
| CTTTGGAATCTTATCATCGG+TGG | 0.598433 | 8.4:-19294837 | None:intergenic |
| GAAGCATAGCTTGTCACTCA+AGG | 0.598774 | 8.4:+19294661 | MS.gene058042:CDS |
| TACCTTCCCGGAGTCTGGTA+CGG | 0.603084 | 8.4:-19294053 | None:intergenic |
| GGTCAATGAAGCTTCAAGGA+AGG | 0.612698 | 8.4:-19294388 | None:intergenic |
| AGTACTTGAATAGATTCACT+GGG | 0.614520 | 8.4:+19294196 | MS.gene058042:CDS |
| TGGTATGTGCAAGGCAACAT+TGG | 0.624437 | 8.4:-19294319 | None:intergenic |
| CCAAGATTAGAATATACACC+AGG | 0.632111 | 8.4:-19293073 | None:intergenic |
| CACCGATGATAAGATTCCAA+AGG | 0.660499 | 8.4:+19294838 | MS.gene058042:CDS |
| TACCGTACCAGACTCCGGGA+AGG | 0.677553 | 8.4:+19294051 | MS.gene058042:CDS |
| GTAGGTGCTCTCATTCAACA+AGG | 0.711960 | 8.4:+19294764 | MS.gene058042:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCACATTATTTAAATCA+AGG | + | chr8.4:19293640-19293659 | MS.gene058042:intron | 15.0% |
| !! | TATCACATTATTTAAATCAA+GGG | + | chr8.4:19293641-19293660 | MS.gene058042:intron | 15.0% |
| !! | TTAAATATTTCATATTATGC+AGG | + | chr8.4:19294558-19294577 | MS.gene058042:intron | 15.0% |
| !!! | ATTTTTCTGATAAATTTAGT+CGG | - | chr8.4:19294440-19294459 | None:intergenic | 15.0% |
| !!! | TACTTTTATTTTTCTACTTA+TGG | + | chr8.4:19293411-19293430 | MS.gene058042:intron | 15.0% |
| !!! | TTTCTATACATATTTCTAAA+CGG | - | chr8.4:19293866-19293885 | None:intergenic | 15.0% |
| !! | AATTTATCAGAAAAATGGAT+AGG | + | chr8.4:19294444-19294463 | MS.gene058042:intron | 20.0% |
| !! | ATTTCAGTATAATACTAGTA+AGG | - | chr8.4:19293170-19293189 | None:intergenic | 20.0% |
| !! | GACTAAATTTATCAGAAAAA+TGG | + | chr8.4:19294439-19294458 | MS.gene058042:intron | 20.0% |
| !! | TGATACTATACATAGTATAT+AGG | - | chr8.4:19294096-19294115 | None:intergenic | 20.0% |
| !! | TTTATTAGATTGTCTTTACA+AGG | + | chr8.4:19293204-19293223 | MS.gene058042:intron | 20.0% |
| ! | AAAGATAGAAAATGGAATGA+TGG | - | chr8.4:19293586-19293605 | None:intergenic | 25.0% |
| ! | AAGATAGAAAATGGAATGAT+GGG | - | chr8.4:19293585-19293604 | None:intergenic | 25.0% |
| ! | AGACTACAAAAGATAGAAAA+TGG | - | chr8.4:19293594-19293613 | None:intergenic | 25.0% |
| ! | ATATCAACTTAGCTTATGTT+TGG | + | chr8.4:19293308-19293327 | MS.gene058042:intron | 25.0% |
| ! | ATGGAATTTGATAAAACCTT+TGG | - | chr8.4:19293107-19293126 | None:intergenic | 25.0% |
| ! | CAATCTTCATTTCATATGAT+TGG | + | chr8.4:19293775-19293794 | MS.gene058042:intron | 25.0% |
| ! | GAGAAAGTTTGAAAAATTTG+AGG | - | chr8.4:19293563-19293582 | None:intergenic | 25.0% |
| ! | TAGAATTTCTTGAACTGTAA+TGG | - | chr8.4:19294005-19294024 | None:intergenic | 25.0% |
| ! | TATAGGTAAGTACAAAGTAA+TGG | - | chr8.4:19294079-19294098 | None:intergenic | 25.0% |
| ! | TATGAATTCATTGTGATTTG+AGG | - | chr8.4:19294165-19294184 | None:intergenic | 25.0% |
| ! | TCAAATCACAATGAATTCAT+AGG | + | chr8.4:19294164-19294183 | MS.gene058042:intron | 25.0% |
| !! | AGGGTTCTAATAAATTAACA+TGG | - | chr8.4:19293927-19293946 | None:intergenic | 25.0% |
| !! | CATTGAATGGTATTTTGTTA+TGG | - | chr8.4:19293700-19293719 | None:intergenic | 25.0% |
| !! | TTCTAAAGATTCAAATGGAA+TGG | - | chr8.4:19293126-19293145 | None:intergenic | 25.0% |
| !!! | TATGATGGATATATCTTACA+AGG | - | chr8.4:19294412-19294431 | None:intergenic | 25.0% |
| AATCACAATGAATTCATAGG+TGG | + | chr8.4:19294167-19294186 | MS.gene058042:intron | 30.0% | |
| ACTTCCAACAGAATAACATT+TGG | - | chr8.4:19293465-19293484 | None:intergenic | 30.0% | |
| AGTACTTGAATAGATTCACT+GGG | + | chr8.4:19294196-19294215 | MS.gene058042:CDS | 30.0% | |
| ATATTCTAATCTTGGCGATA+AGG | + | chr8.4:19293081-19293100 | MS.gene058042:CDS | 30.0% | |
| ATGTATGTGAAGTCATTGAA+TGG | - | chr8.4:19293713-19293732 | None:intergenic | 30.0% | |
| ATGTTATTCTGTTGGAAGTA+TGG | + | chr8.4:19293466-19293485 | MS.gene058042:intron | 30.0% | |
| ATTTAGTCGGTAGTTTATGA+TGG | - | chr8.4:19294427-19294446 | None:intergenic | 30.0% | |
| CACATTATTTAAATCAAGGG+TGG | + | chr8.4:19293644-19293663 | MS.gene058042:intron | 30.0% | |
| TAAAAGATTAAGCCTCTGTT+TGG | - | chr8.4:19293393-19293412 | None:intergenic | 30.0% | |
| TATTAGAACCCTGAATGAAA+TGG | + | chr8.4:19293935-19293954 | MS.gene058042:intron | 30.0% | |
| TTAGCCAAATGTTATTCTGT+TGG | + | chr8.4:19293458-19293477 | MS.gene058042:intron | 30.0% | |
| ! | CACTCTTCTAAAGATTCAAA+TGG | - | chr8.4:19293131-19293150 | None:intergenic | 30.0% |
| ! | GTAAAATTATCAGGCCTTTT+AGG | + | chr8.4:19294273-19294292 | MS.gene058042:CDS | 30.0% |
| ! | TTTTCCTGAAACATTGCTAA+AGG | + | chr8.4:19294718-19294737 | MS.gene058042:CDS | 30.0% |
| !! | AACCTTTGGAATCTTATCAT+CGG | - | chr8.4:19294843-19294862 | None:intergenic | 30.0% |
| !! | AATTGGTAGTGAAAGTGAAT+AGG | - | chr8.4:19293247-19293266 | None:intergenic | 30.0% |
| !!! | AGATTTTTTGTAACTATGGC+CGG | + | chr8.4:19294797-19294816 | MS.gene058042:CDS | 30.0% |
| !!! | GCAGAGATTTTTTGTAACTA+TGG | + | chr8.4:19294793-19294812 | MS.gene058042:CDS | 30.0% |
| AACTTGGTTATCGATCTTGT+TGG | - | chr8.4:19294342-19294361 | None:intergenic | 35.0% | |
| AAGAAATTCTACCTGGATTC+AGG | + | chr8.4:19294014-19294033 | MS.gene058042:CDS | 35.0% | |
| AATAGATTCACTGGGATTAC+TGG | + | chr8.4:19294204-19294223 | MS.gene058042:CDS | 35.0% | |
| ACAGAATGCTTGTTCCTAAA+AGG | - | chr8.4:19294290-19294309 | None:intergenic | 35.0% | |
| ACAGTTCAAGAAATTCTACC+TGG | + | chr8.4:19294007-19294026 | MS.gene058042:intron | 35.0% | |
| ACTGGATGCATTGGATTATT+AGG | + | chr8.4:19294222-19294241 | MS.gene058042:CDS | 35.0% | |
| CAGTACTTGAATAGATTCAC+TGG | + | chr8.4:19294195-19294214 | MS.gene058042:CDS | 35.0% | |
| CCAAGATTAGAATATACACC+AGG | - | chr8.4:19293076-19293095 | None:intergenic | 35.0% | |
| CCTGGTGTATATTCTAATCT+TGG | + | chr8.4:19293073-19293092 | MS.gene058042:CDS | 35.0% | |
| GACCCTGTTGTAAAATTATC+AGG | + | chr8.4:19294264-19294283 | MS.gene058042:CDS | 35.0% | |
| GATGATAAGATTCCAAAGGT+TGG | + | chr8.4:19294842-19294861 | MS.gene058042:CDS | 35.0% | |
| GGATTATTAGGAAACCAAGA+TGG | + | chr8.4:19294234-19294253 | MS.gene058042:CDS | 35.0% | |
| GGGGTTTACTTCATGATAAA+TGG | - | chr8.4:19294612-19294631 | None:intergenic | 35.0% | |
| TCACTTTCACTACCAATTCA+TGG | + | chr8.4:19293249-19293268 | MS.gene058042:CDS | 35.0% | |
| TGGCATCTAAATTTGCACTT+AGG | + | chr8.4:19293795-19293814 | MS.gene058042:intron | 35.0% | |
| TTCACTACCAATTCATGGAT+TGG | + | chr8.4:19293254-19293273 | MS.gene058042:CDS | 35.0% | |
| TTTAGACTGCAAGAATGAGA+AGG | + | chr8.4:19293356-19293375 | MS.gene058042:intron | 35.0% | |
| ! | AGGCCTGATAATTTTACAAC+AGG | - | chr8.4:19294270-19294289 | None:intergenic | 35.0% |
| ! | AGGTAATGCCATTTCATTCA+GGG | - | chr8.4:19293946-19293965 | None:intergenic | 35.0% |
| ! | CTCTCATTCAACAAGGATTT+TGG | + | chr8.4:19294771-19294790 | MS.gene058042:CDS | 35.0% |
| ! | GGCCTGATAATTTTACAACA+GGG | - | chr8.4:19294269-19294288 | None:intergenic | 35.0% |
| ! | TTAGCTTATGTTTGGAACTG+CGG | + | chr8.4:19293316-19293335 | MS.gene058042:intron | 35.0% |
| AATGCAGGCTTCTCATGTAA+AGG | + | chr8.4:19293277-19293296 | MS.gene058042:CDS | 40.0% | |
| ACAAAGTAATGGTACCTTCC+CGG | - | chr8.4:19294068-19294087 | None:intergenic | 40.0% | |
| ACAAGGTCAATGAAGCTTCA+AGG | - | chr8.4:19294395-19294414 | None:intergenic | 40.0% | |
| ACATGGCTCTCATTTGTTTG+TGG | - | chr8.4:19293910-19293929 | None:intergenic | 40.0% | |
| AGAAACAGTTTAGCCCTCAA+AGG | + | chr8.4:19293881-19293900 | MS.gene058042:intron | 40.0% | |
| ATGCTTCACTTGTGTTGCAA+TGG | - | chr8.4:19294648-19294667 | None:intergenic | 40.0% | |
| CACCGATGATAAGATTCCAA+AGG | + | chr8.4:19294838-19294857 | MS.gene058042:CDS | 40.0% | |
| CTGCATTCCAATCCATGAAT+TGG | - | chr8.4:19293264-19293283 | None:intergenic | 40.0% | |
| TTGAAAACAGTCCTGAATCC+AGG | - | chr8.4:19294028-19294047 | None:intergenic | 40.0% | |
| TTGTTTGTGGAGACCTTTGA+GGG | - | chr8.4:19293897-19293916 | None:intergenic | 40.0% | |
| TTTGTTTGTGGAGACCTTTG+AGG | - | chr8.4:19293898-19293917 | None:intergenic | 40.0% | |
| ! | CAGGTAATGCCATTTCATTC+AGG | - | chr8.4:19293947-19293966 | None:intergenic | 40.0% |
| !! | CAATTCATGGATTGGAATGC+AGG | + | chr8.4:19293262-19293281 | MS.gene058042:CDS | 40.0% |
| !! | CTTTGGAATCTTATCATCGG+TGG | - | chr8.4:19294840-19294859 | None:intergenic | 40.0% |
| AAAGGCTCGCTTTGACAGTT+CGG | + | chr8.4:19294736-19294755 | MS.gene058042:CDS | 45.0% | |
| AAATGCATGCTGAGCACCAA+TGG | - | chr8.4:19294699-19294718 | None:intergenic | 45.0% | |
| AAATGTACCGTACCAGACTC+CGG | + | chr8.4:19294046-19294065 | MS.gene058042:CDS | 45.0% | |
| AATCTTGGCGATAAGGCCAA+AGG | + | chr8.4:19293088-19293107 | MS.gene058042:CDS | 45.0% | |
| ACTGGGATTACTGGATGCAT+TGG | + | chr8.4:19294213-19294232 | MS.gene058042:CDS | 45.0% | |
| AGCTTGTCACTCAAGGAAAC+TGG | + | chr8.4:19294668-19294687 | MS.gene058042:CDS | 45.0% | |
| CGAGCCTTTAGCAATGTTTC+AGG | - | chr8.4:19294725-19294744 | None:intergenic | 45.0% | |
| CGATCTTGTTGGTATGTGCA+AGG | - | chr8.4:19294331-19294350 | None:intergenic | 45.0% | |
| GGTCAATGAAGCTTCAAGGA+AGG | - | chr8.4:19294391-19294410 | None:intergenic | 45.0% | |
| GTAGGTGCTCTCATTCAACA+AGG | + | chr8.4:19294764-19294783 | MS.gene058042:CDS | 45.0% | |
| TGGTATGTGCAAGGCAACAT+TGG | - | chr8.4:19294322-19294341 | None:intergenic | 45.0% | |
| TTTGACAGTTCGGGCAAAGT+AGG | + | chr8.4:19294746-19294765 | MS.gene058042:CDS | 45.0% | |
| ! | ATGTTTGGAACTGCGGTGAT+CGG | + | chr8.4:19293323-19293342 | MS.gene058042:intron | 45.0% |
| ! | GAAGCATAGCTTGTCACTCA+AGG | + | chr8.4:19294661-19294680 | MS.gene058042:CDS | 45.0% |
| ! | TCGATAACCAAGTTGACTGC+TGG | + | chr8.4:19294348-19294367 | MS.gene058042:CDS | 45.0% |
| !! | AAGGAAACTGGTGTCACCAT+TGG | + | chr8.4:19294680-19294699 | MS.gene058042:CDS | 45.0% |
| AAGGCTCGCTTTGACAGTTC+GGG | + | chr8.4:19294737-19294756 | MS.gene058042:CDS | 50.0% | |
| AATGTACCGTACCAGACTCC+GGG | + | chr8.4:19294047-19294066 | MS.gene058042:CDS | 50.0% | |
| ACTACAGTCAGACATGCTGC+AGG | - | chr8.4:19293966-19293985 | None:intergenic | 50.0% | |
| AGTAAACCCCCTAACCCAGA+CGG | + | chr8.4:19294622-19294641 | MS.gene058042:CDS | 50.0% | |
| CAAGAATGAGAAGGCTACCG+CGG | + | chr8.4:19293365-19293384 | MS.gene058042:intron | 50.0% | |
| CAGGGTCATATGCTCCATCT+TGG | - | chr8.4:19294251-19294270 | None:intergenic | 50.0% | |
| GGAACAAGCATTCTGTCCCT+AGG | + | chr8.4:19294294-19294313 | MS.gene058042:CDS | 50.0% | |
| TAAGCCTCTGTTTGGATCCG+CGG | - | chr8.4:19293385-19293404 | None:intergenic | 50.0% | |
| TCCAAAGGTTGGAGTCTCCA+TGG | + | chr8.4:19294853-19294872 | MS.gene058042:CDS | 50.0% | |
| TGTAACTATGGCCGGCGAAA+TGG | + | chr8.4:19294805-19294824 | MS.gene058042:CDS | 50.0% | |
| TTGTGTTGCAATGGCCGTCT+GGG | - | chr8.4:19294639-19294658 | None:intergenic | 50.0% | |
| !! | ACCAAGTTGACTGCTGGCTT+CGG | + | chr8.4:19294354-19294373 | MS.gene058042:CDS | 50.0% |
| !! | ATGGCCGGCGAAATGGATTT+TGG | + | chr8.4:19294812-19294831 | MS.gene058042:CDS | 50.0% |
| !! | CAAGGCAACATTGGCTCCTA+GGG | - | chr8.4:19294313-19294332 | None:intergenic | 50.0% |
| !! | TGGCCGGCGAAATGGATTTT+GGG | + | chr8.4:19294813-19294832 | MS.gene058042:CDS | 50.0% |
| AATGGTACCTTCCCGGAGTC+TGG | - | chr8.4:19294061-19294080 | None:intergenic | 55.0% | |
| CTTGTGTTGCAATGGCCGTC+TGG | - | chr8.4:19294640-19294659 | None:intergenic | 55.0% | |
| GCCATGGAGACTCCAACCTT+TGG | - | chr8.4:19294857-19294876 | None:intergenic | 55.0% | |
| GGCCCCAAAATCCATTTCGC+CGG | - | chr8.4:19294819-19294838 | None:intergenic | 55.0% | |
| TACCTTCCCGGAGTCTGGTA+CGG | - | chr8.4:19294056-19294075 | None:intergenic | 55.0% | |
| TGCAATGGCCGTCTGGGTTA+GGG | - | chr8.4:19294633-19294652 | None:intergenic | 55.0% | |
| TTGCAATGGCCGTCTGGGTT+AGG | - | chr8.4:19294634-19294653 | None:intergenic | 55.0% | |
| !! | GCAAGGCAACATTGGCTCCT+AGG | - | chr8.4:19294314-19294333 | None:intergenic | 55.0% |
| !! | GGCCGGCGAAATGGATTTTG+GGG | + | chr8.4:19294814-19294833 | MS.gene058042:CDS | 55.0% |
| GCCGAAGCCAGCAGTCAACT+TGG | - | chr8.4:19294358-19294377 | None:intergenic | 60.0% | |
| GCTACCGCGGATCCAAACAG+AGG | + | chr8.4:19293378-19293397 | MS.gene058042:intron | 60.0% | |
| TACCGTACCAGACTCCGGGA+AGG | + | chr8.4:19294051-19294070 | MS.gene058042:CDS | 60.0% | |
| ! | CAATGGCCGTCTGGGTTAGG+GGG | - | chr8.4:19294631-19294650 | None:intergenic | 60.0% |
| ! | GCAATGGCCGTCTGGGTTAG+GGG | - | chr8.4:19294632-19294651 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 19293061 | 19294889 | 19293061 | ID=MS.gene058042 |
| chr8.4 | mRNA | 19293061 | 19294889 | 19293061 | ID=MS.gene058042.t1;Parent=MS.gene058042 |
| chr8.4 | exon | 19293061 | 19293109 | 19293061 | ID=MS.gene058042.t1.exon1;Parent=MS.gene058042.t1 |
| chr8.4 | CDS | 19293061 | 19293109 | 19293061 | ID=cds.MS.gene058042.t1;Parent=MS.gene058042.t1 |
| chr8.4 | exon | 19293212 | 19293298 | 19293212 | ID=MS.gene058042.t1.exon2;Parent=MS.gene058042.t1 |
| chr8.4 | CDS | 19293212 | 19293298 | 19293212 | ID=cds.MS.gene058042.t1;Parent=MS.gene058042.t1 |
| chr8.4 | exon | 19294011 | 19294072 | 19294011 | ID=MS.gene058042.t1.exon3;Parent=MS.gene058042.t1 |
| chr8.4 | CDS | 19294011 | 19294072 | 19294011 | ID=cds.MS.gene058042.t1;Parent=MS.gene058042.t1 |
| chr8.4 | exon | 19294186 | 19294412 | 19294186 | ID=MS.gene058042.t1.exon4;Parent=MS.gene058042.t1 |
| chr8.4 | CDS | 19294186 | 19294412 | 19294186 | ID=cds.MS.gene058042.t1;Parent=MS.gene058042.t1 |
| chr8.4 | exon | 19294580 | 19294889 | 19294580 | ID=MS.gene058042.t1.exon5;Parent=MS.gene058042.t1 |
| chr8.4 | CDS | 19294580 | 19294889 | 19294580 | ID=cds.MS.gene058042.t1;Parent=MS.gene058042.t1 |
| Gene Sequence |
| Protein sequence |
