Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066094.t1 | XP_003609006.1 | 96.1 | 205 | 8 | 0 | 8 | 212 | 40 | 244 | 1.20E-105 | 392.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066094.t1 | Q9SRH5 | 42.0 | 205 | 110 | 3 | 10 | 212 | 79 | 276 | 1.2e-37 | 157.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066094.t1 | G7JPX4 | 96.1 | 205 | 8 | 0 | 8 | 212 | 40 | 244 | 8.9e-106 | 392.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054713 | MS.gene066094 | 0.870908 | 1.02E-66 | -1.69E-46 |
MS.gene055860 | MS.gene066094 | 0.805832 | 1.10E-49 | -1.69E-46 |
MS.gene058042 | MS.gene066094 | 0.985236 | 6.09E-163 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066094.t1 | MTR_4g107840 | 96.098 | 205 | 8 | 0 | 8 | 212 | 40 | 244 | 2.43e-144 | 402 |
MS.gene066094.t1 | MTR_8g469150 | 40.566 | 212 | 117 | 3 | 3 | 212 | 72 | 276 | 1.46e-46 | 155 |
MS.gene066094.t1 | MTR_7g009330 | 41.176 | 204 | 111 | 3 | 11 | 212 | 81 | 277 | 7.47e-46 | 153 |
MS.gene066094.t1 | MTR_8g469150 | 40.306 | 196 | 109 | 2 | 3 | 196 | 72 | 261 | 4.33e-43 | 146 |
MS.gene066094.t1 | MTR_6g011390 | 37.209 | 215 | 122 | 4 | 2 | 212 | 73 | 278 | 4.50e-42 | 143 |
MS.gene066094.t1 | MTR_5g015580 | 27.358 | 212 | 145 | 3 | 3 | 212 | 72 | 276 | 1.88e-25 | 100 |
MS.gene066094.t1 | MTR_1g018205 | 25.943 | 212 | 148 | 3 | 3 | 212 | 73 | 277 | 1.58e-21 | 89.7 |
MS.gene066094.t1 | MTR_4g128300 | 29.016 | 193 | 129 | 2 | 22 | 212 | 93 | 279 | 3.50e-21 | 89.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066094.t1 | AT3G01280 | 41.951 | 205 | 110 | 3 | 10 | 212 | 79 | 276 | 6.00e-49 | 161 |
MS.gene066094.t1 | AT5G15090 | 36.275 | 204 | 119 | 4 | 11 | 212 | 80 | 274 | 1.05e-38 | 135 |
MS.gene066094.t1 | AT5G15090 | 36.275 | 204 | 119 | 4 | 11 | 212 | 80 | 274 | 1.05e-38 | 135 |
MS.gene066094.t1 | AT5G57490 | 30.189 | 212 | 137 | 4 | 3 | 212 | 72 | 274 | 9.50e-29 | 108 |
MS.gene066094.t1 | AT5G67500 | 30.189 | 212 | 139 | 3 | 3 | 212 | 72 | 276 | 8.22e-28 | 106 |
MS.gene066094.t1 | AT5G67500 | 30.189 | 212 | 139 | 3 | 3 | 212 | 99 | 303 | 1.08e-27 | 107 |
MS.gene066094.t1 | AT5G67500 | 29.064 | 203 | 135 | 3 | 3 | 203 | 72 | 267 | 3.16e-23 | 95.1 |
MS.gene066094.t1 | AT3G49920 | 34.127 | 126 | 82 | 1 | 87 | 212 | 102 | 226 | 1.10e-15 | 73.2 |
Find 58 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGGCCGGCGAAATGGATTT+TGG | 0.152016 | 8.4:+19369880 | MS.gene066094:CDS |
ACTGGATGCATTGGATTATT+AGG | 0.191506 | 8.4:+19369290 | MS.gene066094:CDS |
CTCTCATTCAACAAGGATTT+TGG | 0.192793 | 8.4:+19369839 | MS.gene066094:CDS |
CGAGCCTTTAGCAATGTTTC+AGG | 0.209136 | 8.4:-19369790 | None:intergenic |
TTGCAATGGCCGTCTGGGTT+AGG | 0.244222 | 8.4:-19369699 | None:intergenic |
AATAGATTCACTGGGATTAC+TGG | 0.244615 | 8.4:+19369272 | MS.gene066094:CDS |
CTTGTGTTGCAATGGCCGTC+TGG | 0.310688 | 8.4:-19369705 | None:intergenic |
TGCAATGGCCGTCTGGGTTA+GGG | 0.312768 | 8.4:-19369698 | None:intergenic |
AAGAAATTCTACCTGGATTC+AGG | 0.317980 | 8.4:+19369082 | MS.gene066094:CDS |
GACCCTGTTGTAAAATTATC+AGG | 0.320742 | 8.4:+19369332 | MS.gene066094:CDS |
ACAGAATGCTTGTTCCTAAA+AGG | 0.329840 | 8.4:-19369355 | None:intergenic |
GGGGTTTACTTCATGATAAA+TGG | 0.338544 | 8.4:-19369677 | None:intergenic |
TAGAATTTCTTGAACTGTAA+TGG | 0.369739 | 8.4:-19369070 | None:intergenic |
AAAGGCTCGCTTTGACAGTT+CGG | 0.382952 | 8.4:+19369804 | MS.gene066094:CDS |
TGTAACTATGGCCGGCGAAA+TGG | 0.408333 | 8.4:+19369873 | MS.gene066094:CDS |
AAGGCTCGCTTTGACAGTTC+GGG | 0.409065 | 8.4:+19369805 | MS.gene066094:CDS |
AATGGTACCTTCCCGGAGTC+TGG | 0.421783 | 8.4:-19369126 | None:intergenic |
ACCAAGTTGACTGCTGGCTT+CGG | 0.424833 | 8.4:+19369422 | MS.gene066094:CDS |
GCAAGGCAACATTGGCTCCT+AGG | 0.425523 | 8.4:-19369379 | None:intergenic |
ACAAAGTAATGGTACCTTCC+CGG | 0.441553 | 8.4:-19369133 | None:intergenic |
AGCTTGTCACTCAAGGAAAC+TGG | 0.442221 | 8.4:+19369736 | MS.gene066094:CDS |
ACTGGGATTACTGGATGCAT+TGG | 0.448328 | 8.4:+19369281 | MS.gene066094:CDS |
CAGGGTCATATGCTCCATCT+TGG | 0.460843 | 8.4:-19369316 | None:intergenic |
ACAAGGTCAATGAAGCTTCA+AGG | 0.465289 | 8.4:-19369460 | None:intergenic |
GCCATGGAGACTCCAACCTT+TGG | 0.474824 | 8.4:-19369922 | None:intergenic |
CAGTACTTGAATAGATTCAC+TGG | 0.475573 | 8.4:+19369263 | MS.gene066094:CDS |
AACTTGGTTATCGATCTTGT+TGG | 0.497298 | 8.4:-19369407 | None:intergenic |
TTTGACAGTTCGGGCAAAGT+AGG | 0.498953 | 8.4:+19369814 | MS.gene066094:CDS |
GCAATGGCCGTCTGGGTTAG+GGG | 0.501382 | 8.4:-19369697 | None:intergenic |
CAAGGCAACATTGGCTCCTA+GGG | 0.505987 | 8.4:-19369378 | None:intergenic |
GCCGAAGCCAGCAGTCAACT+TGG | 0.507792 | 8.4:-19369423 | None:intergenic |
TTGTGTTGCAATGGCCGTCT+GGG | 0.533482 | 8.4:-19369704 | None:intergenic |
GGAACAAGCATTCTGTCCCT+AGG | 0.535981 | 8.4:+19369362 | MS.gene066094:CDS |
AAGGAAACTGGTGTCACCAT+TGG | 0.538400 | 8.4:+19369748 | MS.gene066094:CDS |
AAATGTACCGTACCAGACTC+CGG | 0.544121 | 8.4:+19369114 | MS.gene066094:CDS |
CAATGGCCGTCTGGGTTAGG+GGG | 0.545151 | 8.4:-19369696 | None:intergenic |
TTGAAAACAGTCCTGAATCC+AGG | 0.545165 | 8.4:-19369093 | None:intergenic |
ACAGTTCAAGAAATTCTACC+TGG | 0.548340 | 8.4:+19369075 | MS.gene066094:CDS |
TCGATAACCAAGTTGACTGC+TGG | 0.549363 | 8.4:+19369416 | MS.gene066094:CDS |
GGCCCCAAAATCCATTTCGC+CGG | 0.561250 | 8.4:-19369884 | None:intergenic |
CGATCTTGTTGGTATGTGCA+AGG | 0.562305 | 8.4:-19369396 | None:intergenic |
AACCTTTGGAATCTTATCAT+CGG | 0.566666 | 8.4:-19369908 | None:intergenic |
AAATGCATGCTGAGCACCAA+TGG | 0.571123 | 8.4:-19369764 | None:intergenic |
GGATTATTAGGAAACCAAGA+TGG | 0.572580 | 8.4:+19369302 | MS.gene066094:CDS |
TCCAAAGGTTGGAGTCTCCA+TGG | 0.577690 | 8.4:+19369921 | MS.gene066094:CDS |
ATGCTTCACTTGTGTTGCAA+TGG | 0.577920 | 8.4:-19369713 | None:intergenic |
GATGATAAGATTCCAAAGGT+TGG | 0.579129 | 8.4:+19369910 | MS.gene066094:CDS |
AGATTAGGGTCTTAGAGCCA+TGG | 0.589733 | 8.4:-19369938 | None:intergenic |
AATGTACCGTACCAGACTCC+GGG | 0.592748 | 8.4:+19369115 | MS.gene066094:CDS |
CTTTGGAATCTTATCATCGG+TGG | 0.598433 | 8.4:-19369905 | None:intergenic |
GAAGCATAGCTTGTCACTCA+AGG | 0.598774 | 8.4:+19369729 | MS.gene066094:CDS |
TACCTTCCCGGAGTCTGGTA+CGG | 0.603084 | 8.4:-19369121 | None:intergenic |
GGTCAATGAAGCTTCAAGGA+AGG | 0.612698 | 8.4:-19369456 | None:intergenic |
AGTACTTGAATAGATTCACT+GGG | 0.614520 | 8.4:+19369264 | MS.gene066094:CDS |
TGGTATGTGCAAGGCAACAT+TGG | 0.624437 | 8.4:-19369387 | None:intergenic |
CACCGATGATAAGATTCCAA+AGG | 0.660499 | 8.4:+19369906 | MS.gene066094:CDS |
TACCGTACCAGACTCCGGGA+AGG | 0.677553 | 8.4:+19369119 | MS.gene066094:CDS |
GTAGGTGCTCTCATTCAACA+AGG | 0.711960 | 8.4:+19369832 | MS.gene066094:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAATATTTCATATTATGC+AGG | + | chr8.4:19369626-19369645 | MS.gene066094:intron | 15.0% |
!!! | ATTTTTCTGATAAATTTAGT+CGG | - | chr8.4:19369508-19369527 | None:intergenic | 15.0% |
!! | AATTTATCAGAAAAATGGAT+AGG | + | chr8.4:19369512-19369531 | MS.gene066094:intron | 20.0% |
!! | GACTAAATTTATCAGAAAAA+TGG | + | chr8.4:19369507-19369526 | MS.gene066094:intron | 20.0% |
!! | TGATACTATACATAGTATAT+AGG | - | chr8.4:19369164-19369183 | None:intergenic | 20.0% |
! | TAGAATTTCTTGAACTGTAA+TGG | - | chr8.4:19369073-19369092 | None:intergenic | 25.0% |
! | TATAGGTAAGTACAAAGTAA+TGG | - | chr8.4:19369147-19369166 | None:intergenic | 25.0% |
! | TATGAATTCATTGTGATTTG+AGG | - | chr8.4:19369233-19369252 | None:intergenic | 25.0% |
! | TCAAATCACAATGAATTCAT+AGG | + | chr8.4:19369232-19369251 | MS.gene066094:intron | 25.0% |
!!! | TATGATGGATATATCTTACA+AGG | - | chr8.4:19369480-19369499 | None:intergenic | 25.0% |
AATCACAATGAATTCATAGG+TGG | + | chr8.4:19369235-19369254 | MS.gene066094:intron | 30.0% | |
AGTACTTGAATAGATTCACT+GGG | + | chr8.4:19369264-19369283 | MS.gene066094:CDS | 30.0% | |
ATTTAGTCGGTAGTTTATGA+TGG | - | chr8.4:19369495-19369514 | None:intergenic | 30.0% | |
! | GTAAAATTATCAGGCCTTTT+AGG | + | chr8.4:19369341-19369360 | MS.gene066094:CDS | 30.0% |
! | TTTTCCTGAAACATTGCTAA+AGG | + | chr8.4:19369786-19369805 | MS.gene066094:CDS | 30.0% |
!! | AACCTTTGGAATCTTATCAT+CGG | - | chr8.4:19369911-19369930 | None:intergenic | 30.0% |
!!! | AGATTTTTTGTAACTATGGC+CGG | + | chr8.4:19369865-19369884 | MS.gene066094:CDS | 30.0% |
!!! | GCAGAGATTTTTTGTAACTA+TGG | + | chr8.4:19369861-19369880 | MS.gene066094:CDS | 30.0% |
AACTTGGTTATCGATCTTGT+TGG | - | chr8.4:19369410-19369429 | None:intergenic | 35.0% | |
AAGAAATTCTACCTGGATTC+AGG | + | chr8.4:19369082-19369101 | MS.gene066094:CDS | 35.0% | |
AATAGATTCACTGGGATTAC+TGG | + | chr8.4:19369272-19369291 | MS.gene066094:CDS | 35.0% | |
ACAGAATGCTTGTTCCTAAA+AGG | - | chr8.4:19369358-19369377 | None:intergenic | 35.0% | |
ACAGTTCAAGAAATTCTACC+TGG | + | chr8.4:19369075-19369094 | MS.gene066094:CDS | 35.0% | |
ACTGGATGCATTGGATTATT+AGG | + | chr8.4:19369290-19369309 | MS.gene066094:CDS | 35.0% | |
CAGTACTTGAATAGATTCAC+TGG | + | chr8.4:19369263-19369282 | MS.gene066094:CDS | 35.0% | |
GACCCTGTTGTAAAATTATC+AGG | + | chr8.4:19369332-19369351 | MS.gene066094:CDS | 35.0% | |
GATGATAAGATTCCAAAGGT+TGG | + | chr8.4:19369910-19369929 | MS.gene066094:CDS | 35.0% | |
GGATTATTAGGAAACCAAGA+TGG | + | chr8.4:19369302-19369321 | MS.gene066094:CDS | 35.0% | |
GGGGTTTACTTCATGATAAA+TGG | - | chr8.4:19369680-19369699 | None:intergenic | 35.0% | |
! | AGGCCTGATAATTTTACAAC+AGG | - | chr8.4:19369338-19369357 | None:intergenic | 35.0% |
! | CTCTCATTCAACAAGGATTT+TGG | + | chr8.4:19369839-19369858 | MS.gene066094:CDS | 35.0% |
! | GGCCTGATAATTTTACAACA+GGG | - | chr8.4:19369337-19369356 | None:intergenic | 35.0% |
ACAAAGTAATGGTACCTTCC+CGG | - | chr8.4:19369136-19369155 | None:intergenic | 40.0% | |
ACAAGGTCAATGAAGCTTCA+AGG | - | chr8.4:19369463-19369482 | None:intergenic | 40.0% | |
ATGCTTCACTTGTGTTGCAA+TGG | - | chr8.4:19369716-19369735 | None:intergenic | 40.0% | |
CACCGATGATAAGATTCCAA+AGG | + | chr8.4:19369906-19369925 | MS.gene066094:CDS | 40.0% | |
TTGAAAACAGTCCTGAATCC+AGG | - | chr8.4:19369096-19369115 | None:intergenic | 40.0% | |
!! | CTTTGGAATCTTATCATCGG+TGG | - | chr8.4:19369908-19369927 | None:intergenic | 40.0% |
AAAGGCTCGCTTTGACAGTT+CGG | + | chr8.4:19369804-19369823 | MS.gene066094:CDS | 45.0% | |
AAATGCATGCTGAGCACCAA+TGG | - | chr8.4:19369767-19369786 | None:intergenic | 45.0% | |
AAATGTACCGTACCAGACTC+CGG | + | chr8.4:19369114-19369133 | MS.gene066094:CDS | 45.0% | |
ACTGGGATTACTGGATGCAT+TGG | + | chr8.4:19369281-19369300 | MS.gene066094:CDS | 45.0% | |
AGCTTGTCACTCAAGGAAAC+TGG | + | chr8.4:19369736-19369755 | MS.gene066094:CDS | 45.0% | |
CGAGCCTTTAGCAATGTTTC+AGG | - | chr8.4:19369793-19369812 | None:intergenic | 45.0% | |
CGATCTTGTTGGTATGTGCA+AGG | - | chr8.4:19369399-19369418 | None:intergenic | 45.0% | |
GGTCAATGAAGCTTCAAGGA+AGG | - | chr8.4:19369459-19369478 | None:intergenic | 45.0% | |
GTAGGTGCTCTCATTCAACA+AGG | + | chr8.4:19369832-19369851 | MS.gene066094:CDS | 45.0% | |
TGGTATGTGCAAGGCAACAT+TGG | - | chr8.4:19369390-19369409 | None:intergenic | 45.0% | |
TTTGACAGTTCGGGCAAAGT+AGG | + | chr8.4:19369814-19369833 | MS.gene066094:CDS | 45.0% | |
! | GAAGCATAGCTTGTCACTCA+AGG | + | chr8.4:19369729-19369748 | MS.gene066094:CDS | 45.0% |
! | TCGATAACCAAGTTGACTGC+TGG | + | chr8.4:19369416-19369435 | MS.gene066094:CDS | 45.0% |
!! | AAGGAAACTGGTGTCACCAT+TGG | + | chr8.4:19369748-19369767 | MS.gene066094:CDS | 45.0% |
AAGGCTCGCTTTGACAGTTC+GGG | + | chr8.4:19369805-19369824 | MS.gene066094:CDS | 50.0% | |
AATGTACCGTACCAGACTCC+GGG | + | chr8.4:19369115-19369134 | MS.gene066094:CDS | 50.0% | |
AGTAAACCCCCTAACCCAGA+CGG | + | chr8.4:19369690-19369709 | MS.gene066094:CDS | 50.0% | |
CAGGGTCATATGCTCCATCT+TGG | - | chr8.4:19369319-19369338 | None:intergenic | 50.0% | |
GGAACAAGCATTCTGTCCCT+AGG | + | chr8.4:19369362-19369381 | MS.gene066094:CDS | 50.0% | |
TCCAAAGGTTGGAGTCTCCA+TGG | + | chr8.4:19369921-19369940 | MS.gene066094:CDS | 50.0% | |
TGTAACTATGGCCGGCGAAA+TGG | + | chr8.4:19369873-19369892 | MS.gene066094:CDS | 50.0% | |
TTGTGTTGCAATGGCCGTCT+GGG | - | chr8.4:19369707-19369726 | None:intergenic | 50.0% | |
!! | ACCAAGTTGACTGCTGGCTT+CGG | + | chr8.4:19369422-19369441 | MS.gene066094:CDS | 50.0% |
!! | ATGGCCGGCGAAATGGATTT+TGG | + | chr8.4:19369880-19369899 | MS.gene066094:CDS | 50.0% |
!! | CAAGGCAACATTGGCTCCTA+GGG | - | chr8.4:19369381-19369400 | None:intergenic | 50.0% |
!! | TGGCCGGCGAAATGGATTTT+GGG | + | chr8.4:19369881-19369900 | MS.gene066094:CDS | 50.0% |
AATGGTACCTTCCCGGAGTC+TGG | - | chr8.4:19369129-19369148 | None:intergenic | 55.0% | |
CTTGTGTTGCAATGGCCGTC+TGG | - | chr8.4:19369708-19369727 | None:intergenic | 55.0% | |
GCCATGGAGACTCCAACCTT+TGG | - | chr8.4:19369925-19369944 | None:intergenic | 55.0% | |
GGCCCCAAAATCCATTTCGC+CGG | - | chr8.4:19369887-19369906 | None:intergenic | 55.0% | |
TACCTTCCCGGAGTCTGGTA+CGG | - | chr8.4:19369124-19369143 | None:intergenic | 55.0% | |
TGCAATGGCCGTCTGGGTTA+GGG | - | chr8.4:19369701-19369720 | None:intergenic | 55.0% | |
TTGCAATGGCCGTCTGGGTT+AGG | - | chr8.4:19369702-19369721 | None:intergenic | 55.0% | |
!! | GCAAGGCAACATTGGCTCCT+AGG | - | chr8.4:19369382-19369401 | None:intergenic | 55.0% |
!! | GGCCGGCGAAATGGATTTTG+GGG | + | chr8.4:19369882-19369901 | MS.gene066094:CDS | 55.0% |
GCCGAAGCCAGCAGTCAACT+TGG | - | chr8.4:19369426-19369445 | None:intergenic | 60.0% | |
TACCGTACCAGACTCCGGGA+AGG | + | chr8.4:19369119-19369138 | MS.gene066094:CDS | 60.0% | |
! | CAATGGCCGTCTGGGTTAGG+GGG | - | chr8.4:19369699-19369718 | None:intergenic | 60.0% |
! | GCAATGGCCGTCTGGGTTAG+GGG | - | chr8.4:19369700-19369719 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 19369039 | 19369957 | 19369039 | ID=MS.gene066094 |
chr8.4 | mRNA | 19369039 | 19369957 | 19369039 | ID=MS.gene066094.t1;Parent=MS.gene066094 |
chr8.4 | exon | 19369039 | 19369140 | 19369039 | ID=MS.gene066094.t1.exon1;Parent=MS.gene066094.t1 |
chr8.4 | CDS | 19369039 | 19369140 | 19369039 | ID=cds.MS.gene066094.t1;Parent=MS.gene066094.t1 |
chr8.4 | exon | 19369254 | 19369480 | 19369254 | ID=MS.gene066094.t1.exon2;Parent=MS.gene066094.t1 |
chr8.4 | CDS | 19369254 | 19369480 | 19369254 | ID=cds.MS.gene066094.t1;Parent=MS.gene066094.t1 |
chr8.4 | exon | 19369648 | 19369957 | 19369648 | ID=MS.gene066094.t1.exon3;Parent=MS.gene066094.t1 |
chr8.4 | CDS | 19369648 | 19369957 | 19369648 | ID=cds.MS.gene066094.t1;Parent=MS.gene066094.t1 |
Gene Sequence |
Protein sequence |