Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066098.t1 | XP_003609006.1 | 96.1 | 205 | 8 | 0 | 8 | 212 | 40 | 244 | 1.20E-105 | 392.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066098.t1 | Q9SRH5 | 42.0 | 205 | 110 | 3 | 10 | 212 | 79 | 276 | 1.2e-37 | 157.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066098.t1 | G7JPX4 | 96.1 | 205 | 8 | 0 | 8 | 212 | 40 | 244 | 8.9e-106 | 392.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054713 | MS.gene066098 | 0.874609 | 5.91E-68 | -1.69E-46 |
MS.gene055860 | MS.gene066098 | 0.808983 | 2.37E-50 | -1.69E-46 |
MS.gene058042 | MS.gene066098 | 0.986205 | 5.14E-166 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066098.t1 | MTR_4g107840 | 96.098 | 205 | 8 | 0 | 8 | 212 | 40 | 244 | 2.43e-144 | 402 |
MS.gene066098.t1 | MTR_8g469150 | 40.566 | 212 | 117 | 3 | 3 | 212 | 72 | 276 | 1.46e-46 | 155 |
MS.gene066098.t1 | MTR_7g009330 | 41.176 | 204 | 111 | 3 | 11 | 212 | 81 | 277 | 7.47e-46 | 153 |
MS.gene066098.t1 | MTR_8g469150 | 40.306 | 196 | 109 | 2 | 3 | 196 | 72 | 261 | 4.33e-43 | 146 |
MS.gene066098.t1 | MTR_6g011390 | 37.209 | 215 | 122 | 4 | 2 | 212 | 73 | 278 | 4.50e-42 | 143 |
MS.gene066098.t1 | MTR_5g015580 | 27.358 | 212 | 145 | 3 | 3 | 212 | 72 | 276 | 1.88e-25 | 100 |
MS.gene066098.t1 | MTR_1g018205 | 25.943 | 212 | 148 | 3 | 3 | 212 | 73 | 277 | 1.58e-21 | 89.7 |
MS.gene066098.t1 | MTR_4g128300 | 29.016 | 193 | 129 | 2 | 22 | 212 | 93 | 279 | 3.50e-21 | 89.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066098.t1 | AT3G01280 | 41.951 | 205 | 110 | 3 | 10 | 212 | 79 | 276 | 6.00e-49 | 161 |
MS.gene066098.t1 | AT5G15090 | 36.275 | 204 | 119 | 4 | 11 | 212 | 80 | 274 | 1.05e-38 | 135 |
MS.gene066098.t1 | AT5G15090 | 36.275 | 204 | 119 | 4 | 11 | 212 | 80 | 274 | 1.05e-38 | 135 |
MS.gene066098.t1 | AT5G57490 | 30.189 | 212 | 137 | 4 | 3 | 212 | 72 | 274 | 9.50e-29 | 108 |
MS.gene066098.t1 | AT5G67500 | 30.189 | 212 | 139 | 3 | 3 | 212 | 72 | 276 | 8.22e-28 | 106 |
MS.gene066098.t1 | AT5G67500 | 30.189 | 212 | 139 | 3 | 3 | 212 | 99 | 303 | 1.08e-27 | 107 |
MS.gene066098.t1 | AT5G67500 | 29.064 | 203 | 135 | 3 | 3 | 203 | 72 | 267 | 3.16e-23 | 95.1 |
MS.gene066098.t1 | AT3G49920 | 34.127 | 126 | 82 | 1 | 87 | 212 | 102 | 226 | 1.10e-15 | 73.2 |
Find 58 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGGCCGGCGAAATGGATTT+TGG | 0.152016 | 8.4:-19354826 | MS.gene066098:CDS |
ACTGGATGCATTGGATTATT+AGG | 0.191506 | 8.4:-19355416 | MS.gene066098:CDS |
CTCTCATTCAACAAGGATTT+TGG | 0.192793 | 8.4:-19354867 | MS.gene066098:CDS |
CGAGCCTTTAGCAATGTTTC+AGG | 0.209136 | 8.4:+19354916 | None:intergenic |
TTGCAATGGCCGTCTGGGTT+AGG | 0.244222 | 8.4:+19355007 | None:intergenic |
AATAGATTCACTGGGATTAC+TGG | 0.244615 | 8.4:-19355434 | MS.gene066098:CDS |
CTTGTGTTGCAATGGCCGTC+TGG | 0.310688 | 8.4:+19355001 | None:intergenic |
TGCAATGGCCGTCTGGGTTA+GGG | 0.312768 | 8.4:+19355008 | None:intergenic |
AAGAAATTCTACCTGGATTC+AGG | 0.317980 | 8.4:-19355624 | MS.gene066098:CDS |
GACCCTGTTGTAAAATTATC+AGG | 0.320742 | 8.4:-19355374 | MS.gene066098:CDS |
ACAGAATGCTTGTTCCTAAA+AGG | 0.329840 | 8.4:+19355351 | None:intergenic |
GGGGTTTACTTCATGATAAA+TGG | 0.338544 | 8.4:+19355029 | None:intergenic |
TAGAATTTCTTGAACTGTAA+TGG | 0.369739 | 8.4:+19355636 | None:intergenic |
AAAGGCTCGCTTTGACAGTT+CGG | 0.382952 | 8.4:-19354902 | MS.gene066098:CDS |
TGTAACTATGGCCGGCGAAA+TGG | 0.408333 | 8.4:-19354833 | MS.gene066098:CDS |
AAGGCTCGCTTTGACAGTTC+GGG | 0.409065 | 8.4:-19354901 | MS.gene066098:CDS |
AATGGTACCTTCCCGGAGTC+TGG | 0.421783 | 8.4:+19355580 | None:intergenic |
ACCAAGTTGACTGCTGGCTT+CGG | 0.424833 | 8.4:-19355284 | MS.gene066098:CDS |
GCAAGGCAACATTGGCTCCT+AGG | 0.425523 | 8.4:+19355327 | None:intergenic |
ACAAAGTAATGGTACCTTCC+CGG | 0.441553 | 8.4:+19355573 | None:intergenic |
AGCTTGTCACTCAAGGAAAC+TGG | 0.442221 | 8.4:-19354970 | MS.gene066098:CDS |
ACTGGGATTACTGGATGCAT+TGG | 0.448328 | 8.4:-19355425 | MS.gene066098:CDS |
CAGGGTCATATGCTCCATCT+TGG | 0.460843 | 8.4:+19355390 | None:intergenic |
ACAAGGTCAATGAAGCTTCA+AGG | 0.465289 | 8.4:+19355246 | None:intergenic |
GCCATGGAGACTCCAACCTT+TGG | 0.474824 | 8.4:+19354784 | None:intergenic |
CAGTACTTGAATAGATTCAC+TGG | 0.475573 | 8.4:-19355443 | MS.gene066098:CDS |
AACTTGGTTATCGATCTTGT+TGG | 0.497298 | 8.4:+19355299 | None:intergenic |
TTTGACAGTTCGGGCAAAGT+AGG | 0.498953 | 8.4:-19354892 | MS.gene066098:CDS |
GCAATGGCCGTCTGGGTTAG+GGG | 0.501382 | 8.4:+19355009 | None:intergenic |
CAAGGCAACATTGGCTCCTA+GGG | 0.505987 | 8.4:+19355328 | None:intergenic |
GCCGAAGCCAGCAGTCAACT+TGG | 0.507792 | 8.4:+19355283 | None:intergenic |
TTGTGTTGCAATGGCCGTCT+GGG | 0.533482 | 8.4:+19355002 | None:intergenic |
GGAACAAGCATTCTGTCCCT+AGG | 0.535981 | 8.4:-19355344 | MS.gene066098:CDS |
AAGGAAACTGGTGTCACCAT+TGG | 0.538400 | 8.4:-19354958 | MS.gene066098:CDS |
AAATGTACCGTACCAGACTC+CGG | 0.544121 | 8.4:-19355592 | MS.gene066098:CDS |
CAATGGCCGTCTGGGTTAGG+GGG | 0.545151 | 8.4:+19355010 | None:intergenic |
TTGAAAACAGTCCTGAATCC+AGG | 0.545165 | 8.4:+19355613 | None:intergenic |
ACAGTTCAAGAAATTCTACC+TGG | 0.548340 | 8.4:-19355631 | MS.gene066098:CDS |
TCGATAACCAAGTTGACTGC+TGG | 0.549363 | 8.4:-19355290 | MS.gene066098:CDS |
GGCCCCAAAATCCATTTCGC+CGG | 0.561250 | 8.4:+19354822 | None:intergenic |
CGATCTTGTTGGTATGTGCA+AGG | 0.562305 | 8.4:+19355310 | None:intergenic |
AACCTTTGGAATCTTATCAT+CGG | 0.566666 | 8.4:+19354798 | None:intergenic |
AAATGCATGCTGAGCACCAA+TGG | 0.571123 | 8.4:+19354942 | None:intergenic |
GGATTATTAGGAAACCAAGA+TGG | 0.572580 | 8.4:-19355404 | MS.gene066098:CDS |
TCCAAAGGTTGGAGTCTCCA+TGG | 0.577690 | 8.4:-19354785 | MS.gene066098:CDS |
ATGCTTCACTTGTGTTGCAA+TGG | 0.577920 | 8.4:+19354993 | None:intergenic |
GATGATAAGATTCCAAAGGT+TGG | 0.579129 | 8.4:-19354796 | MS.gene066098:CDS |
AGATTAGGGTCTTAGAGCCA+TGG | 0.589733 | 8.4:+19354768 | None:intergenic |
AATGTACCGTACCAGACTCC+GGG | 0.592748 | 8.4:-19355591 | MS.gene066098:CDS |
CTTTGGAATCTTATCATCGG+TGG | 0.598433 | 8.4:+19354801 | None:intergenic |
GAAGCATAGCTTGTCACTCA+AGG | 0.598774 | 8.4:-19354977 | MS.gene066098:CDS |
TACCTTCCCGGAGTCTGGTA+CGG | 0.603084 | 8.4:+19355585 | None:intergenic |
GGTCAATGAAGCTTCAAGGA+AGG | 0.612698 | 8.4:+19355250 | None:intergenic |
AGTACTTGAATAGATTCACT+GGG | 0.614520 | 8.4:-19355442 | MS.gene066098:CDS |
TGGTATGTGCAAGGCAACAT+TGG | 0.624437 | 8.4:+19355319 | None:intergenic |
CACCGATGATAAGATTCCAA+AGG | 0.660499 | 8.4:-19354800 | MS.gene066098:CDS |
TACCGTACCAGACTCCGGGA+AGG | 0.677553 | 8.4:-19355587 | MS.gene066098:intron |
GTAGGTGCTCTCATTCAACA+AGG | 0.711960 | 8.4:-19354874 | MS.gene066098:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAATATTTCATATTATGC+AGG | - | chr8.4:19355358-19355377 | MS.gene066098:CDS | 15.0% |
!!! | ATTTTTCTGATAAATTTAGT+CGG | + | chr8.4:19355240-19355259 | None:intergenic | 15.0% |
!! | AATTTATCAGAAAAATGGAT+AGG | - | chr8.4:19355244-19355263 | MS.gene066098:intron | 20.0% |
!! | GACTAAATTTATCAGAAAAA+TGG | - | chr8.4:19355239-19355258 | MS.gene066098:intron | 20.0% |
!! | TGATACTATACATAGTATAT+AGG | + | chr8.4:19354896-19354915 | None:intergenic | 20.0% |
! | TAGAATTTCTTGAACTGTAA+TGG | + | chr8.4:19354805-19354824 | None:intergenic | 25.0% |
! | TATAGGTAAGTACAAAGTAA+TGG | + | chr8.4:19354879-19354898 | None:intergenic | 25.0% |
! | TATGAATTCATTGTGATTTG+AGG | + | chr8.4:19354965-19354984 | None:intergenic | 25.0% |
! | TCAAATCACAATGAATTCAT+AGG | - | chr8.4:19354964-19354983 | MS.gene066098:CDS | 25.0% |
!!! | TATGATGGATATATCTTACA+AGG | + | chr8.4:19355212-19355231 | None:intergenic | 25.0% |
AATCACAATGAATTCATAGG+TGG | - | chr8.4:19354967-19354986 | MS.gene066098:CDS | 30.0% | |
AGTACTTGAATAGATTCACT+GGG | - | chr8.4:19354996-19355015 | MS.gene066098:CDS | 30.0% | |
ATTTAGTCGGTAGTTTATGA+TGG | + | chr8.4:19355227-19355246 | None:intergenic | 30.0% | |
! | GTAAAATTATCAGGCCTTTT+AGG | - | chr8.4:19355073-19355092 | MS.gene066098:intron | 30.0% |
! | TTTTCCTGAAACATTGCTAA+AGG | - | chr8.4:19355518-19355537 | MS.gene066098:intron | 30.0% |
!! | AACCTTTGGAATCTTATCAT+CGG | + | chr8.4:19355643-19355662 | None:intergenic | 30.0% |
!!! | AGATTTTTTGTAACTATGGC+CGG | - | chr8.4:19355597-19355616 | MS.gene066098:CDS | 30.0% |
!!! | GCAGAGATTTTTTGTAACTA+TGG | - | chr8.4:19355593-19355612 | MS.gene066098:CDS | 30.0% |
AACTTGGTTATCGATCTTGT+TGG | + | chr8.4:19355142-19355161 | None:intergenic | 35.0% | |
AAGAAATTCTACCTGGATTC+AGG | - | chr8.4:19354814-19354833 | MS.gene066098:CDS | 35.0% | |
AATAGATTCACTGGGATTAC+TGG | - | chr8.4:19355004-19355023 | MS.gene066098:CDS | 35.0% | |
ACAGAATGCTTGTTCCTAAA+AGG | + | chr8.4:19355090-19355109 | None:intergenic | 35.0% | |
ACAGTTCAAGAAATTCTACC+TGG | - | chr8.4:19354807-19354826 | MS.gene066098:CDS | 35.0% | |
ACTGGATGCATTGGATTATT+AGG | - | chr8.4:19355022-19355041 | MS.gene066098:CDS | 35.0% | |
CAGTACTTGAATAGATTCAC+TGG | - | chr8.4:19354995-19355014 | MS.gene066098:CDS | 35.0% | |
GACCCTGTTGTAAAATTATC+AGG | - | chr8.4:19355064-19355083 | MS.gene066098:intron | 35.0% | |
GATGATAAGATTCCAAAGGT+TGG | - | chr8.4:19355642-19355661 | MS.gene066098:CDS | 35.0% | |
GGATTATTAGGAAACCAAGA+TGG | - | chr8.4:19355034-19355053 | MS.gene066098:CDS | 35.0% | |
GGGGTTTACTTCATGATAAA+TGG | + | chr8.4:19355412-19355431 | None:intergenic | 35.0% | |
! | AGGCCTGATAATTTTACAAC+AGG | + | chr8.4:19355070-19355089 | None:intergenic | 35.0% |
! | CTCTCATTCAACAAGGATTT+TGG | - | chr8.4:19355571-19355590 | MS.gene066098:intron | 35.0% |
! | GGCCTGATAATTTTACAACA+GGG | + | chr8.4:19355069-19355088 | None:intergenic | 35.0% |
ACAAAGTAATGGTACCTTCC+CGG | + | chr8.4:19354868-19354887 | None:intergenic | 40.0% | |
ACAAGGTCAATGAAGCTTCA+AGG | + | chr8.4:19355195-19355214 | None:intergenic | 40.0% | |
ATGCTTCACTTGTGTTGCAA+TGG | + | chr8.4:19355448-19355467 | None:intergenic | 40.0% | |
CACCGATGATAAGATTCCAA+AGG | - | chr8.4:19355638-19355657 | MS.gene066098:CDS | 40.0% | |
TTGAAAACAGTCCTGAATCC+AGG | + | chr8.4:19354828-19354847 | None:intergenic | 40.0% | |
!! | CTTTGGAATCTTATCATCGG+TGG | + | chr8.4:19355640-19355659 | None:intergenic | 40.0% |
AAAGGCTCGCTTTGACAGTT+CGG | - | chr8.4:19355536-19355555 | MS.gene066098:intron | 45.0% | |
AAATGCATGCTGAGCACCAA+TGG | + | chr8.4:19355499-19355518 | None:intergenic | 45.0% | |
AAATGTACCGTACCAGACTC+CGG | - | chr8.4:19354846-19354865 | MS.gene066098:CDS | 45.0% | |
ACTGGGATTACTGGATGCAT+TGG | - | chr8.4:19355013-19355032 | MS.gene066098:CDS | 45.0% | |
AGCTTGTCACTCAAGGAAAC+TGG | - | chr8.4:19355468-19355487 | MS.gene066098:intron | 45.0% | |
CGAGCCTTTAGCAATGTTTC+AGG | + | chr8.4:19355525-19355544 | None:intergenic | 45.0% | |
CGATCTTGTTGGTATGTGCA+AGG | + | chr8.4:19355131-19355150 | None:intergenic | 45.0% | |
GGTCAATGAAGCTTCAAGGA+AGG | + | chr8.4:19355191-19355210 | None:intergenic | 45.0% | |
GTAGGTGCTCTCATTCAACA+AGG | - | chr8.4:19355564-19355583 | MS.gene066098:intron | 45.0% | |
TGGTATGTGCAAGGCAACAT+TGG | + | chr8.4:19355122-19355141 | None:intergenic | 45.0% | |
TTTGACAGTTCGGGCAAAGT+AGG | - | chr8.4:19355546-19355565 | MS.gene066098:intron | 45.0% | |
! | GAAGCATAGCTTGTCACTCA+AGG | - | chr8.4:19355461-19355480 | MS.gene066098:intron | 45.0% |
! | TCGATAACCAAGTTGACTGC+TGG | - | chr8.4:19355148-19355167 | MS.gene066098:intron | 45.0% |
!! | AAGGAAACTGGTGTCACCAT+TGG | - | chr8.4:19355480-19355499 | MS.gene066098:intron | 45.0% |
AAGGCTCGCTTTGACAGTTC+GGG | - | chr8.4:19355537-19355556 | MS.gene066098:intron | 50.0% | |
AATGTACCGTACCAGACTCC+GGG | - | chr8.4:19354847-19354866 | MS.gene066098:CDS | 50.0% | |
AGTAAACCCCCTAACCCAGA+CGG | - | chr8.4:19355422-19355441 | MS.gene066098:CDS | 50.0% | |
CAGGGTCATATGCTCCATCT+TGG | + | chr8.4:19355051-19355070 | None:intergenic | 50.0% | |
GGAACAAGCATTCTGTCCCT+AGG | - | chr8.4:19355094-19355113 | MS.gene066098:intron | 50.0% | |
TCCAAAGGTTGGAGTCTCCA+TGG | - | chr8.4:19355653-19355672 | MS.gene066098:CDS | 50.0% | |
TGTAACTATGGCCGGCGAAA+TGG | - | chr8.4:19355605-19355624 | MS.gene066098:CDS | 50.0% | |
TTGTGTTGCAATGGCCGTCT+GGG | + | chr8.4:19355439-19355458 | None:intergenic | 50.0% | |
!! | ACCAAGTTGACTGCTGGCTT+CGG | - | chr8.4:19355154-19355173 | MS.gene066098:intron | 50.0% |
!! | ATGGCCGGCGAAATGGATTT+TGG | - | chr8.4:19355612-19355631 | MS.gene066098:CDS | 50.0% |
!! | CAAGGCAACATTGGCTCCTA+GGG | + | chr8.4:19355113-19355132 | None:intergenic | 50.0% |
!! | TGGCCGGCGAAATGGATTTT+GGG | - | chr8.4:19355613-19355632 | MS.gene066098:CDS | 50.0% |
AATGGTACCTTCCCGGAGTC+TGG | + | chr8.4:19354861-19354880 | None:intergenic | 55.0% | |
CTTGTGTTGCAATGGCCGTC+TGG | + | chr8.4:19355440-19355459 | None:intergenic | 55.0% | |
GCCATGGAGACTCCAACCTT+TGG | + | chr8.4:19355657-19355676 | None:intergenic | 55.0% | |
GGCCCCAAAATCCATTTCGC+CGG | + | chr8.4:19355619-19355638 | None:intergenic | 55.0% | |
TACCTTCCCGGAGTCTGGTA+CGG | + | chr8.4:19354856-19354875 | None:intergenic | 55.0% | |
TGCAATGGCCGTCTGGGTTA+GGG | + | chr8.4:19355433-19355452 | None:intergenic | 55.0% | |
TTGCAATGGCCGTCTGGGTT+AGG | + | chr8.4:19355434-19355453 | None:intergenic | 55.0% | |
!! | GCAAGGCAACATTGGCTCCT+AGG | + | chr8.4:19355114-19355133 | None:intergenic | 55.0% |
!! | GGCCGGCGAAATGGATTTTG+GGG | - | chr8.4:19355614-19355633 | MS.gene066098:CDS | 55.0% |
GCCGAAGCCAGCAGTCAACT+TGG | + | chr8.4:19355158-19355177 | None:intergenic | 60.0% | |
TACCGTACCAGACTCCGGGA+AGG | - | chr8.4:19354851-19354870 | MS.gene066098:CDS | 60.0% | |
! | CAATGGCCGTCTGGGTTAGG+GGG | + | chr8.4:19355431-19355450 | None:intergenic | 60.0% |
! | GCAATGGCCGTCTGGGTTAG+GGG | + | chr8.4:19355432-19355451 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 19354771 | 19355689 | 19354771 | ID=MS.gene066098 |
chr8.4 | mRNA | 19354771 | 19355689 | 19354771 | ID=MS.gene066098.t1;Parent=MS.gene066098 |
chr8.4 | exon | 19355588 | 19355689 | 19355588 | ID=MS.gene066098.t1.exon1;Parent=MS.gene066098.t1 |
chr8.4 | CDS | 19355588 | 19355689 | 19355588 | ID=cds.MS.gene066098.t1;Parent=MS.gene066098.t1 |
chr8.4 | exon | 19355248 | 19355474 | 19355248 | ID=MS.gene066098.t1.exon2;Parent=MS.gene066098.t1 |
chr8.4 | CDS | 19355248 | 19355474 | 19355248 | ID=cds.MS.gene066098.t1;Parent=MS.gene066098.t1 |
chr8.4 | exon | 19354771 | 19355080 | 19354771 | ID=MS.gene066098.t1.exon3;Parent=MS.gene066098.t1 |
chr8.4 | CDS | 19354771 | 19355080 | 19354771 | ID=cds.MS.gene066098.t1;Parent=MS.gene066098.t1 |
Gene Sequence |
Protein sequence |