AlfalfaGEDB | MS.gene066346

M. sativa cultivar XinJiangDaYe / MS.gene066346

KEGG: K14844
GO: GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
PFAM: PF08144.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066346.t1	XP_013458284.1	98.6	288	4	0	1	288	352	639	1.10E-149	539.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066346.t1	Q9LRZ3	53.6	280	124	2	1	278	358	633	5.9e-75	282.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066346.t1	A0A072V2I3	98.6	288	4	0	1	288	352	639	8.0e-150	539.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049876	MS.gene066346	0.814044	1.88E-51	-1.69E-46
MS.gene050916	MS.gene066346	0.822507	2.28E-53	-1.69E-46
MS.gene055555	MS.gene066346	0.805236	1.47E-49	-1.69E-46
MS.gene055808	MS.gene066346	0.804034	2.62E-49	-1.69E-46
MS.gene060429	MS.gene066346	0.824824	6.55E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066346.t1	MTR_4g120470	98.611	288	4	0	1	288	352	639	0.0	576
MS.gene066346.t1	MTR_4g120460	57.407	108	19	2	163	270	90	170	1.14e-26	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066346.t1	AT3G16810	55.124	283	115	4	1	278	358	633	2.62e-102	312

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Find 0 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACACAAGTAATACATGGA+AGG	+	32540:33413-33432	None:intergenic	30.0%
ATATGCAGTTAGCATCTATT+TGG	-	32540:32828-32847	MS.gene066346:CDS	30.0%
CGATACAAAACTGATAACAA+AGG	-	32540:32553-32572	MS.gene066346:CDS	30.0%
GACCATTAGAAAACTAATCT+TGG	-	32540:33890-33909	MS.gene066346:intron	30.0%
GATATATGCATTGAGAATGT+AGG	-	32540:33587-33606	MS.gene066346:intron	30.0%
TAGATGCTAACTGCATATAA+AGG	+	32540:32826-32845	None:intergenic	30.0%
TTGCAGCCTTTAATTGATAA+TGG	-	32540:34151-34170	MS.gene066346:intron	30.0%
AACAGTTGGGATGTAGTAAT+TGG	+	32540:33006-33025	None:intergenic	35.0%
AGAATGTAGGAGAACTGATA+CGG	-	32540:33600-33619	MS.gene066346:intron	35.0%
AGAGGTTAAGGAAAATACAG+AGG	+	32540:33450-33469	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
32540	gene	32524	34216	32524	ID=MS.gene066346
32540	mRNA	32524	34216	32524	ID=MS.gene066346.t1;Parent=MS.gene066346
32540	exon	34166	34216	34166	ID=MS.gene066346.t1.exon1;Parent=MS.gene066346.t1
32540	CDS	34166	34216	34166	ID=cds.MS.gene066346.t1;Parent=MS.gene066346.t1
32540	exon	34023	34073	34023	ID=MS.gene066346.t1.exon2;Parent=MS.gene066346.t1
32540	CDS	34023	34073	34023	ID=cds.MS.gene066346.t1;Parent=MS.gene066346.t1
32540	exon	33650	33757	33650	ID=MS.gene066346.t1.exon3;Parent=MS.gene066346.t1
32540	CDS	33650	33757	33650	ID=cds.MS.gene066346.t1;Parent=MS.gene066346.t1
32540	exon	33369	33569	33369	ID=MS.gene066346.t1.exon4;Parent=MS.gene066346.t1
32540	CDS	33369	33569	33369	ID=cds.MS.gene066346.t1;Parent=MS.gene066346.t1
32540	exon	33088	33162	33088	ID=MS.gene066346.t1.exon5;Parent=MS.gene066346.t1
32540	CDS	33088	33162	33088	ID=cds.MS.gene066346.t1;Parent=MS.gene066346.t1
32540	exon	32752	32999	32752	ID=MS.gene066346.t1.exon6;Parent=MS.gene066346.t1
32540	CDS	32752	32999	32752	ID=cds.MS.gene066346.t1;Parent=MS.gene066346.t1
32540	exon	32524	32656	32524	ID=MS.gene066346.t1.exon7;Parent=MS.gene066346.t1
32540	CDS	32524	32656	32524	ID=cds.MS.gene066346.t1;Parent=MS.gene066346.t1

Gene Sequence

>MS.gene066346

GTGCTGGTCTCCATCCTTTCAGTTGTCGACGATACAAAACTGATAACAAAGGTGAGTTTGATTTTGATATTCTATTGCATAGTAATTGTTGCTCTATAATGATACTTGTTTCATATTAAGCTTTTAAAATATTCTCATTTCAGGTTATCATTCGCGAGCTTCAATCAATTCTGAAGGAGCTTGTTTTGGACAAGGTTCTTTTATTCTATACTTCACATATGATATTTACAAGCATTGTAAAAAAGAAGCCAATATAAACTATAGTTTTCATCAAATAATAATAAGAATATTCTTGAAATCCTTTATATGCAGTTAGCATCTATTTGGCAGTAATTTCTTTATTCCTCCTGCCCTAGCTTCTTCAATCCCATAAATAAAACCATGCATAAAGACTATTTATTTTATGTTCTTATGACGTGGTTTATGATGTTTTGATGAATATAACTTCCGGATTTTCAGAATGGAAGACGTCCTTTACTCCAATTACTACATCCCAACTGTTCACGCTACTTCAGTCCTGATGAACTTGCTTCTATGAATTCATCTATACCTTCTCTGTCTCTCAAGGTTTCTTTTGTTCCCATCTTTTTCGTCTTTTTATACTTTAGCAACTCATTAATCACTTCATTCATTTTGATCGCTGTCAGGATCAGTCAGAAGCAAGCTCTCAGACAGAAACTTCCAAGGTTTCAATTGGCGACGATGATTCCATGGAAGACAGCAAAGTGAAAGTGCCCGAAGTTAATGAAGATAAAACTTCTGTGGATGATACTGACCTAGCTGAGAGTGGAAAGAAAGACCCATTGGTCAGAAGGCAGGAGCTATTGATCAACAGTGGACTTGCAGAGGTCGGCTGCTTTAGCTTTCCTTCTAATAATTTAGTTATCCTTCCATGTATTACTTGTGTTTTATAGTGATGTATTCCTCTGTATTTTCCTTAACCTCTGGTTGCTGACCTGATTCAATTTTTTTTGATGGGAAAGGTTATTTACATCAATAAATTCTGGATTGTGAAATTGTACTGAAAGTAATGTTTGATTGTAATTTTCTACAGAGTCTTCTTGATATATGCATTGAGAATGTAGGAGAACTGATACGGTCAAATTTTGGCAAAGAGGTCATATACGAGGTAATAGTTATTACATTGAGATTTAAATTTTACAAGCTCAATTTGTTACGTAGCATTGCCTTTTTGATAAATTCAATGGCACATGCAGGTTGCGACAGGGGGATCTGAGGGCATATTGCATCCAACTTTGGATGATAAGATTAATTCTCTCCACAAAGCGATAGCATCTCTTGCAGCAGTGCCTAAGTCAGAAGATTCACAAGAGGAGCACGTCCTTGAAAATTTCTTTTCAAATCGGACCATTAGAAAACTAATCTTGGACTGCCCCGACTTTGCTTCCATCTTGTGGAAGGAAGCTTTAAAAGGGAAATGTGAATTATGGGCCCATGGTCACAGGTAGGTCTCATTTGCTCGCATATCATCATCCAACAGAATCATGGTACAGAGGAACAGTTTCTTATGTTTTCTTTTTCTTGACTTTGTGATTGCAGCTGTAAGGTTATCACTGCATTTTTGGAATCAACAGATTCAAAGGTACAGAAGCTTGCAAAAAAAGAGTTGCAGCCTTTAATTGATAATGGAGTTCTCAAGAACCCACAGCCCAAAGAACAAGCAAGCCAATGA

Protein sequence

>MS.gene066346.t1

VLVSILSVVDDTKLITKVIIRELQSILKELVLDKNGRRPLLQLLHPNCSRYFSPDELASMNSSIPSLSLKDQSEASSQTETSKVSIGDDDSMEDSKVKVPEVNEDKTSVDDTDLAESGKKDPLVRRQELLINSGLAESLLDICIENVGELIRSNFGKEVIYEVATGGSEGILHPTLDDKINSLHKAIASLAAVPKSEDSQEEHVLENFFSNRTIRKLILDCPDFASILWKEALKGKCELWAHGHSCKVITAFLESTDSKVQKLAKKELQPLIDNGVLKNPQPKEQASQ