AlfalfaGEDB | MS.gene050916

M. sativa cultivar XinJiangDaYe / MS.gene050916

KEGG: K02883
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF17135.7

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050916.t1	XP_003626231.1	99.4	163	1	0	1	163	1	163	1.40E-83	318.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050916.t1	O65729	87.0	162	20	1	4	165	1	161	4.4e-75	282.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050916.t1	B7FMF5	99.4	163	1	0	1	163	1	163	9.8e-84	318.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049876	MS.gene050916	0.820918	5.32E-53	-1.69E-46
MS.gene050277	MS.gene050916	0.831473	1.64E-55	-1.69E-46
MS.gene050290	MS.gene050916	0.841419	4.81E-58	-1.69E-46
MS.gene050574	MS.gene050916	0.817089	3.95E-52	-1.69E-46
MS.gene050916	MS.gene051330	0.854958	8.70E-62	-1.69E-46
MS.gene050916	MS.gene051903	0.827154	1.83E-54	-1.69E-46
MS.gene050916	MS.gene052947	0.80734	5.30E-50	-1.69E-46
MS.gene050916	MS.gene054937	0.825939	3.57E-54	-1.69E-46
MS.gene050916	MS.gene055808	0.814412	1.56E-51	-1.69E-46
MS.gene050916	MS.gene056257	0.819691	1.02E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050916.t1	MTR_7g112880	99.394	165	1	1	165	1	165	2.08e-119	335
MS.gene050916.t1	MTR_7g108805	89.091	165	18	1	165	1	165	1.40e-107	305
MS.gene050916.t1	MTR_1g083460	86.061	165	23	1	165	1	165	5.77e-104	296
MS.gene050916.t1	MTR_7g112880	99.107	112	1	54	165	1	112	6.16e-79	230
MS.gene050916.t1	MTR_4g005170	84.848	33	5	133	165	582	614	2.05e-12	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050916.t1	AT5G27850	81.212	165	31	0	1	165	1	165	1.79e-99	284
MS.gene050916.t1	AT3G05590	80.606	165	32	0	1	165	1	165	1.50e-98	282
MS.gene050916.t1	AT2G47570	76.829	164	37	1	3	165	1	164	3.83e-90	261
MS.gene050916.t1	AT3G05590	79.464	112	23	0	54	165	1	112	2.75e-65	196
MS.gene050916.t1	AT3G05590	79.464	112	23	0	54	165	1	112	2.75e-65	196
MS.gene050916.t1	AT5G27850	78.571	112	24	0	54	165	1	112	2.96e-64	193

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Find 57 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACTTTGGTCGTGCTCC+TGG	0.468460	7.1:+3437884	MS.gene050916:CDS
AAAGTTGATCGAGTACATGA+AGG	0.551641	7.1:+3437112	MS.gene050916:CDS
AAATGGAATGGACCTTGACG+AGG	0.641410	7.1:-3435715	None:intergenic
AACTTTGACAGAGAAATTGG+AGG	0.595797	7.1:-3437095	None:intergenic
AAGAGGCCCAAAGAATGCTA+GGG	0.636036	7.1:+3437853	MS.gene050916:CDS
AAGTTGATCGAGTACATGAA+GGG	0.557741	7.1:+3437113	MS.gene050916:CDS
ACGTGCAAGAATAGAGAAGG+CGG	0.663924	7.1:+3437351	MS.gene050916:CDS
ACTGCTTCCCTAGCATTCTT+TGG	0.206364	7.1:-3437860	None:intergenic
AGCTCCCCTTGGACAGAACA+CGG	0.610780	7.1:+3437411	MS.gene050916:CDS
AGGGAAGCAGTAAAACACTT+TGG	0.592083	7.1:+3437872	MS.gene050916:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTATAGTCCTAGACCTTA+CGG	-	chr7.1:3436059-3436078	None:intergenic	30.0%
AGGTAGATATCATTGGATTT+AGG	-	chr7.1:3435689-3435708	None:intergenic	30.0%
ATAGCTTAAAACACACACTA+AGG	-	chr7.1:3436304-3436323	None:intergenic	30.0%
ATCAACTTTGACAGAGAAAT+TGG	-	chr7.1:3437101-3437120	None:intergenic	30.0%
ATGCATATACTTAGTCCTAA+TGG	-	chr7.1:3436433-3436452	None:intergenic	30.0%
ATGGTTAAAAGTAACATCAC+TGG	-	chr7.1:3436790-3436809	None:intergenic	30.0%
GTACAATTGATTATATCCAG+AGG	-	chr7.1:3436618-3436637	None:intergenic	30.0%
GTTGGAACTAATTATATTCC+TGG	-	chr7.1:3436580-3436599	None:intergenic	30.0%
TATTAAAAATTGCTGCCCTT+AGG	+	chr7.1:3437314-3437333	MS.gene050916:CDS	30.0%
TGGTTAAAAGTAACATCACT+GGG	-	chr7.1:3436789-3436808	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	3435528	3438072	3435528	ID=MS.gene050916
chr7.1	mRNA	3435528	3438072	3435528	ID=MS.gene050916.t1;Parent=MS.gene050916
chr7.1	exon	3435528	3435530	3435528	ID=MS.gene050916.t1.exon1;Parent=MS.gene050916.t1
chr7.1	CDS	3435528	3435530	3435528	ID=cds.MS.gene050916.t1;Parent=MS.gene050916.t1
chr7.1	exon	3435635	3435724	3435635	ID=MS.gene050916.t1.exon2;Parent=MS.gene050916.t1
chr7.1	CDS	3435635	3435724	3435635	ID=cds.MS.gene050916.t1;Parent=MS.gene050916.t1
chr7.1	exon	3437011	3437139	3437011	ID=MS.gene050916.t1.exon3;Parent=MS.gene050916.t1
chr7.1	CDS	3437011	3437139	3437011	ID=cds.MS.gene050916.t1;Parent=MS.gene050916.t1
chr7.1	exon	3437250	3437432	3437250	ID=MS.gene050916.t1.exon4;Parent=MS.gene050916.t1
chr7.1	CDS	3437250	3437432	3437250	ID=cds.MS.gene050916.t1;Parent=MS.gene050916.t1
chr7.1	exon	3437845	3437934	3437845	ID=MS.gene050916.t1.exon5;Parent=MS.gene050916.t1
chr7.1	CDS	3437845	3437934	3437845	ID=cds.MS.gene050916.t1;Parent=MS.gene050916.t1
chr7.1	exon	3438067	3438072	3438067	ID=MS.gene050916.t1.exon6;Parent=MS.gene050916.t1
chr7.1	CDS	3438067	3438072	3438067	ID=cds.MS.gene050916.t1;Parent=MS.gene050916.t1

Gene Sequence

>MS.gene050916

ATGGTAATTGATCTAATCCTAATCTCTATCTACTCTAAAATGCGCTTTTCAATTTCGTCTTCTCTGTATTTAGTTTTGGTTTGATTTAATTTGAATTTGATATGCAGGGGATCGATCTCAAAGCTGGGGGTAAGAGCAAAAACACCAAACGAACCGAACCTAAATCCAATGATATCTACCTCAAGCTCCTCGTCAAGGTCCATTCCATTTTCTATGTCTTATAAAATTAATGCCGTTTTTGTATTTATTTATTTATTTATGTGATTATTGTGATCAAGGAGATCTATAATGTGTGTTTTGATTTTACGTGACGACGATGATGATAAATGTGATCCCAGCTCTATGAGGCCGTAAGGCCAAGGAATACAATTAGTTCCAACACACATTTGTCTGAGCCTCGCAGTGTATTTTATTTTAATTTTATAATTATTTTATATACTTTATTTGAATAATTTTTAATATAGTTTCCATAATTTTTATTTTATCGTATGTGACGATGATGATAAATGTGATCCCAGCTCTATGAGGCCGTAAGGTCTAGGACTATAATTAGTTCCAACACACATTTGTCTGAGCCTCTCAGTCCATTTTCATATGGAGATAGAATAGCTTCTTCAGCCAGGAACCATTCCTGATACATTGAAAAGTAATTTTAAATACTTTTTATTTGCATTTTTTTGTTGTTGAAGTTATTATCCATTTTTGTTGATAATTAAGCTTTACTTATAATTATAATGCGAATACATGTGGATTTATTAGTTTTTTGAATTTAGCCTTAGTGTGTGTTTTAAGCTATGCGACAATGATGATAAATGTGATCCCAGCTCTATGAGACCATAAGGTCCAGGAATAAAATTAGTTCCAACACACTTGTCTGAGCCTCTGCATCTCTCACACCATCACCATTAGGACTAAGTATATGCATTTTTTTTTAAAACATTAATACTATGCTGTACTTGTATAAATATGACCAAGTTGATCGAAAACACATTTGTATTTTTAGCGACGATGATGATAAATGTGATCCCAGCTCTATGAGACCGGAAGGTCCAGGAATATAATTAGTTCCAACACACATTTGTCTGAGCCTCTGGATATAATCAATTGTACGTTATTTGATTTTGTTTTTGAAACATCCGTTATAAATAATTTGCATTCTTTTCTGATTCAGTCTCCATTTTTGTTAATGTCAAAGTTTATAACATATAAGGATTTGGCTTCATGATAGGTGTTTGTTGTTGATATAGGACTTGAGGTTCCCAGTGATGTTACTTTTAACCATGCTAATGCTGATTACATGATTATCTTTAATATCAATATACTGAGGGAACAAGCTCTGTATTCATTGTTTGTTATTGCATCAAAAAATGTTTATGATTGTGTGGAACTTTTATTGTAAAGCTTTTGTATTTAAACTTGTGCATGTTTTACTTGTTATTGCTTTTTATGCAAACCATTCTAATTCCATGTGTTGCACAATCAGCTATATCGCTTCCTTGTTAGAAGGACTGACAGCAATTTCAATGCGGTAATACTCAAGCGCTTGTTCATGAGCAAGGTCAACCGACCTCCAATTTCTCTGTCAAAGTTGATCGAGTACATGAAGGGGAAGGTGTGTTGCTGTCTTCTCTCAATTACAAGTGTATACCAGAAATTATAATTGTTTAGTTTGATTTGTTCTACTATGATCTAATTTTCTCATGGGATTATTGTGTTATGCAGGACGGTAAAATTGGTGTCGTTGTGGGGGCTGTAACAGATGATATCAGGGTATATGAAGTCCCAGTATTAAAAATTGCTGCCCTTAGGTTCACAGAGACGGCACGTGCAAGAATAGAGAAGGCGGGTGGTGAATGCCTAACATTTGATCAACTTGCCCTTAGAGCTCCCCTTGGACAGAACACGGTATGAGTTCATGCCAATATTTGTGTTTTTAGAGCATGATTTAGACAGCCTTACTATCCATTGCGTCATTATGATTGGGAAACAGTACTTACTACTTGCTATCATCAATTATAAGAGATTTTGGTGTCTATTTGGTGTCTATTTTAGATTGGAGACTTGGTTTGAATGGTATATGTTTGGTTGCAGTGTCATGAATTGTCTAAATATTATTTCTTGCTTTACAGTATTGTTTTGTTATATTAGCTCTTCCTGTGAGTAGTTGTGATGGGATAGCCTTGGTTATGTTGAGCTTACCAAGTTTTGTTATATTAGCTCTTCCTGTGAGTAGTTGTGATGGGATAGCCTTGGTTATGTTGAGCTTACCAACAAGCTTTTATGAAGCCAACTTAATTAATATACTTGTTGAATTCAGGTCCTCCTAAGAGGCCCAAAGAATGCTAGGGAAGCAGTAAAACACTTTGGTCGTGCTCCTGGTGTGCCACACAGCCATTCCAAGCCTTATGTAAGATCAAAGGGAAGGAAACAAGAGAAGGCCAGAGGAAAGAGGAAGAGTAGAGGATTTAGGGTTTGAGTTGATAATTTTTTTAAGTGCCTTTCTACAGTTTTGATACTTCTGAAATTCAACTTTTATCAGTTCTGA

Protein sequence

>MS.gene050916.t1

MGIDLKAGGKSKNTKRTEPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPISLSKLIEYMKGKDGKIGVVVGAVTDDIRVYEVPVLKIAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGRAPGVPHSHSKPYF