Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066409.t1 | XP_024638802.1 | 93.1 | 261 | 15 | 1 | 1 | 258 | 131 | 391 | 2.00E-142 | 515 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066409.t1 | Q9SVY1 | 92.5 | 187 | 11 | 1 | 75 | 258 | 197 | 383 | 8.9e-107 | 387.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066409.t1 | A0A396JLH8 | 93.1 | 261 | 15 | 1 | 1 | 258 | 131 | 391 | 1.5e-142 | 515.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene066409.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051719 | MS.gene066409 | 0.816476 | 5.42E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene066409 | 0.801369 | 9.30E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene066409 | 0.802794 | 4.74E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene066409 | 0.800927 | 1.15E-48 | -1.69E-46 |
| MS.gene060519 | MS.gene066409 | 0.813199 | 2.89E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066409.t1 | MTR_1g093095 | 74.419 | 172 | 41 | 1 | 79 | 247 | 99 | 270 | 2.99e-98 | 289 |
| MS.gene066409.t1 | MTR_1g016010 | 35.915 | 142 | 80 | 5 | 87 | 226 | 62 | 194 | 7.67e-20 | 88.6 |
| MS.gene066409.t1 | MTR_1g112270 | 34.932 | 146 | 85 | 5 | 82 | 226 | 60 | 196 | 1.43e-19 | 88.2 |
| MS.gene066409.t1 | MTR_1g112270 | 34.932 | 146 | 85 | 5 | 82 | 226 | 71 | 207 | 1.48e-19 | 88.2 |
| MS.gene066409.t1 | MTR_1g094115 | 37.226 | 137 | 74 | 6 | 92 | 226 | 56 | 182 | 1.68e-19 | 87.8 |
| MS.gene066409.t1 | MTR_1g094115 | 35.374 | 147 | 83 | 6 | 82 | 226 | 63 | 199 | 1.88e-19 | 87.8 |
| MS.gene066409.t1 | MTR_4g059870 | 35.971 | 139 | 80 | 4 | 89 | 226 | 61 | 191 | 1.98e-19 | 87.4 |
| MS.gene066409.t1 | MTR_2g093960 | 35.971 | 139 | 80 | 4 | 89 | 226 | 55 | 185 | 7.16e-19 | 85.5 |
| MS.gene066409.t1 | MTR_8g017210 | 34.286 | 140 | 80 | 5 | 89 | 226 | 85 | 214 | 8.16e-19 | 85.9 |
| MS.gene066409.t1 | MTR_2g090745 | 33.742 | 163 | 97 | 6 | 65 | 226 | 7 | 159 | 1.39e-18 | 84.7 |
| MS.gene066409.t1 | MTR_2g099990 | 33.333 | 147 | 86 | 5 | 82 | 226 | 62 | 198 | 1.48e-18 | 84.7 |
| MS.gene066409.t1 | MTR_2g099990 | 33.813 | 139 | 80 | 5 | 90 | 226 | 1 | 129 | 1.33e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066409.t1 | AT3G57670 | 76.046 | 263 | 39 | 4 | 19 | 258 | 122 | 383 | 2.05e-139 | 397 |
| MS.gene066409.t1 | AT1G51220 | 68.354 | 237 | 70 | 2 | 19 | 250 | 101 | 337 | 8.04e-119 | 343 |
| MS.gene066409.t1 | AT3G20880 | 68.619 | 239 | 64 | 6 | 19 | 250 | 176 | 410 | 1.22e-113 | 332 |
| MS.gene066409.t1 | AT1G13290 | 66.516 | 221 | 43 | 4 | 17 | 235 | 52 | 243 | 1.03e-102 | 301 |
| MS.gene066409.t1 | AT1G34790 | 61.472 | 231 | 75 | 1 | 19 | 249 | 83 | 299 | 8.37e-99 | 291 |
| MS.gene066409.t1 | AT1G08290 | 53.933 | 267 | 81 | 5 | 3 | 243 | 82 | 332 | 2.47e-98 | 291 |
| MS.gene066409.t1 | AT1G34370 | 35.028 | 177 | 100 | 5 | 89 | 256 | 28 | 198 | 5.64e-26 | 103 |
| MS.gene066409.t1 | AT1G34370 | 38.816 | 152 | 81 | 5 | 89 | 231 | 238 | 386 | 1.24e-25 | 105 |
| MS.gene066409.t1 | AT1G34370 | 38.816 | 152 | 81 | 5 | 89 | 231 | 238 | 386 | 1.24e-25 | 105 |
| MS.gene066409.t1 | AT5G22890 | 39.103 | 156 | 82 | 6 | 89 | 234 | 211 | 363 | 2.45e-23 | 97.8 |
| MS.gene066409.t1 | AT1G55110 | 36.620 | 142 | 79 | 5 | 87 | 226 | 84 | 216 | 3.83e-20 | 89.4 |
| MS.gene066409.t1 | AT1G55110 | 36.620 | 142 | 79 | 5 | 87 | 226 | 84 | 216 | 3.83e-20 | 89.4 |
| MS.gene066409.t1 | AT1G55110 | 36.620 | 142 | 79 | 5 | 87 | 226 | 84 | 216 | 3.83e-20 | 89.4 |
| MS.gene066409.t1 | AT2G02070 | 34.194 | 155 | 92 | 4 | 73 | 226 | 59 | 204 | 7.59e-20 | 89.0 |
| MS.gene066409.t1 | AT2G02070 | 34.194 | 155 | 92 | 4 | 73 | 226 | 59 | 204 | 7.59e-20 | 89.0 |
| MS.gene066409.t1 | AT5G03150 | 32.353 | 170 | 98 | 5 | 89 | 257 | 76 | 229 | 1.11e-19 | 88.2 |
| MS.gene066409.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 87 | 226 | 75 | 206 | 1.54e-19 | 87.8 |
| MS.gene066409.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 87 | 226 | 75 | 206 | 1.54e-19 | 87.8 |
| MS.gene066409.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 87 | 226 | 75 | 206 | 1.54e-19 | 87.8 |
| MS.gene066409.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 87 | 226 | 75 | 206 | 1.54e-19 | 87.8 |
| MS.gene066409.t1 | AT1G14580 | 35.616 | 146 | 84 | 4 | 82 | 226 | 69 | 205 | 5.52e-19 | 86.3 |
| MS.gene066409.t1 | AT1G14580 | 35.616 | 146 | 84 | 4 | 82 | 226 | 69 | 205 | 5.52e-19 | 86.3 |
| MS.gene066409.t1 | AT1G14580 | 35.616 | 146 | 84 | 4 | 82 | 226 | 83 | 219 | 5.85e-19 | 86.3 |
| MS.gene066409.t1 | AT2G02080 | 36.232 | 138 | 78 | 4 | 90 | 226 | 1 | 129 | 7.42e-19 | 85.5 |
| MS.gene066409.t1 | AT2G02080 | 36.232 | 138 | 78 | 4 | 90 | 226 | 1 | 129 | 7.42e-19 | 85.5 |
| MS.gene066409.t1 | AT5G66730 | 35.915 | 142 | 79 | 6 | 87 | 226 | 53 | 184 | 1.99e-18 | 84.7 |
| MS.gene066409.t1 | AT3G45260 | 35.971 | 139 | 80 | 4 | 89 | 226 | 62 | 192 | 1.17e-17 | 82.4 |
| MS.gene066409.t1 | AT3G45260 | 35.971 | 139 | 80 | 4 | 89 | 226 | 62 | 192 | 1.17e-17 | 82.4 |
| MS.gene066409.t1 | AT5G60470 | 33.813 | 139 | 83 | 4 | 89 | 226 | 58 | 188 | 1.64e-17 | 81.6 |
| MS.gene066409.t1 | AT1G03840 | 32.192 | 146 | 89 | 4 | 82 | 226 | 55 | 191 | 2.06e-17 | 81.6 |
| MS.gene066409.t1 | AT1G03840 | 32.192 | 146 | 89 | 4 | 82 | 226 | 57 | 193 | 2.17e-17 | 81.6 |
| MS.gene066409.t1 | AT5G60470 | 33.813 | 139 | 83 | 4 | 89 | 226 | 63 | 193 | 2.32e-17 | 81.3 |
| MS.gene066409.t1 | AT5G60470 | 33.813 | 139 | 83 | 4 | 89 | 226 | 67 | 197 | 2.32e-17 | 81.3 |
| MS.gene066409.t1 | AT5G44160 | 33.813 | 139 | 82 | 4 | 89 | 226 | 60 | 189 | 3.05e-17 | 81.3 |
| MS.gene066409.t1 | AT5G44160 | 33.813 | 139 | 82 | 4 | 89 | 226 | 21 | 150 | 3.11e-17 | 80.9 |
| MS.gene066409.t1 | AT3G50700 | 33.333 | 141 | 84 | 4 | 87 | 226 | 55 | 186 | 3.40e-17 | 80.9 |
| MS.gene066409.t1 | AT4G02670 | 32.192 | 146 | 90 | 3 | 82 | 226 | 71 | 208 | 8.40e-17 | 79.7 |
| MS.gene066409.t1 | AT4G02670 | 32.192 | 146 | 90 | 3 | 82 | 226 | 69 | 206 | 8.90e-17 | 79.3 |
| MS.gene066409.t1 | AT3G13810 | 32.877 | 146 | 89 | 4 | 82 | 226 | 87 | 224 | 1.09e-16 | 79.7 |
| MS.gene066409.t1 | AT3G13810 | 33.333 | 147 | 87 | 5 | 82 | 226 | 86 | 223 | 1.17e-16 | 79.3 |
| MS.gene066409.t1 | AT3G13810 | 33.333 | 147 | 87 | 5 | 82 | 226 | 86 | 223 | 1.17e-16 | 79.3 |
| MS.gene066409.t1 | AT3G13810 | 33.333 | 147 | 87 | 5 | 82 | 226 | 81 | 218 | 1.27e-16 | 79.3 |
| MS.gene066409.t1 | AT3G13810 | 32.877 | 146 | 89 | 4 | 82 | 226 | 67 | 204 | 1.43e-16 | 79.3 |
| MS.gene066409.t1 | AT3G13810 | 32.877 | 146 | 89 | 4 | 82 | 226 | 73 | 210 | 1.45e-16 | 79.3 |
| MS.gene066409.t1 | AT1G68130 | 30.216 | 139 | 86 | 5 | 87 | 222 | 62 | 192 | 3.18e-12 | 66.2 |
Find 48 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCCTTCTCAGATTCTTAT+TGG | 0.201568 | 1.3:+36114481 | MS.gene066409:CDS |
| TGTGTACCTCTTAGAGATTC+TGG | 0.222352 | 1.3:-36116805 | None:intergenic |
| AAAGATCATATAAGAGCTTT+TGG | 0.231134 | 1.3:+36117090 | MS.gene066409:CDS |
| GGGAGTGGTCATGCTGCTTA+TGG | 0.311784 | 1.3:+36117111 | MS.gene066409:CDS |
| CACTTCAAACACATTATAAA+AGG | 0.323447 | 1.3:+36116926 | MS.gene066409:CDS |
| CATGTTGTTGTATCTGTTGA+AGG | 0.332315 | 1.3:-36114539 | None:intergenic |
| GTGACTGTTGCACTTCATAT+AGG | 0.339638 | 1.3:+36114286 | MS.gene066409:CDS |
| TGACTGTTGCACTTCATATA+GGG | 0.360463 | 1.3:+36114287 | MS.gene066409:CDS |
| TCTTTCAATGGCTTTGCTCT+TGG | 0.361148 | 1.3:-36116895 | None:intergenic |
| CACTTAACAAGGGTCAATAT+TGG | 0.372959 | 1.3:+36114452 | MS.gene066409:CDS |
| ATTGTTGTTCACCAGGTTGC+AGG | 0.377391 | 1.3:+36116857 | MS.gene066409:CDS |
| CCTTGCTATTGTTGTTCACC+AGG | 0.381067 | 1.3:+36116850 | MS.gene066409:CDS |
| CATGCTGCTTATGGAATTGA+TGG | 0.388035 | 1.3:+36117120 | MS.gene066409:CDS |
| TATTAGCGACGATTCGTCTT+CGG | 0.403746 | 1.3:+36114405 | MS.gene066409:CDS |
| AAGCTTTGGTATTGTCTTTG+TGG | 0.415419 | 1.3:+36117039 | MS.gene066409:CDS |
| CTTATCCTCAGATGCATATG+TGG | 0.432175 | 1.3:+36116755 | MS.gene066409:intron |
| AGAAGAACTGTGGAAAGCTT+TGG | 0.443136 | 1.3:+36117025 | MS.gene066409:CDS |
| GATTGTAGTCATAAAGTAGA+AGG | 0.446388 | 1.3:+36114244 | MS.gene066409:CDS |
| AGTGTTCTGAAATCTTTCAA+TGG | 0.447098 | 1.3:-36116907 | None:intergenic |
| ATCTTGCACTTTAATGGATG+TGG | 0.454122 | 1.3:+36114219 | None:intergenic |
| TCTTGTTCAACTTCAGAAGC+AGG | 0.458660 | 1.3:-36117162 | None:intergenic |
| CTAAGAGGTACACAACCAAC+AGG | 0.500045 | 1.3:+36116814 | MS.gene066409:CDS |
| ATCTCAGAAGAACTAGGGCT+TGG | 0.503709 | 1.3:-36114313 | None:intergenic |
| CAGATGCATATGTGGGGACA+TGG | 0.531260 | 1.3:+36116763 | MS.gene066409:intron |
| CATGGATCACAATACAGAAA+AGG | 0.532079 | 1.3:+36116781 | MS.gene066409:CDS |
| TATGTGTAGAAAATGTGGTA+AGG | 0.535524 | 1.3:+36116969 | MS.gene066409:CDS |
| TTATCCTCAGATGCATATGT+GGG | 0.539918 | 1.3:+36116756 | MS.gene066409:intron |
| GTTGCAATCTCAGAAGAACT+AGG | 0.540111 | 1.3:-36114319 | None:intergenic |
| ATAAGAATCTGAGAAGGAGT+AGG | 0.541391 | 1.3:-36114478 | None:intergenic |
| AGCGACGATTCGTCTTCGGC+TGG | 0.542817 | 1.3:+36114409 | MS.gene066409:CDS |
| GAAGGAAAAGAAGATCATGA+AGG | 0.565534 | 1.3:+36114262 | MS.gene066409:CDS |
| TAAGAATCTGAGAAGGAGTA+GGG | 0.573637 | 1.3:-36114477 | None:intergenic |
| AAAGGACCAGAATCTCTAAG+AGG | 0.574044 | 1.3:+36116799 | MS.gene066409:CDS |
| CACATTATAAAAGGAAACAT+GGG | 0.574183 | 1.3:+36116935 | MS.gene066409:CDS |
| ACACATTATAAAAGGAAACA+TGG | 0.579095 | 1.3:+36116934 | MS.gene066409:CDS |
| CACAACCAACAGGTATGCTA+AGG | 0.584031 | 1.3:+36116824 | MS.gene066409:CDS |
| TTGCAATCTCAGAAGAACTA+GGG | 0.593596 | 1.3:-36114318 | None:intergenic |
| TCAATGTTGTTCCTGCAACC+TGG | 0.607275 | 1.3:-36116868 | None:intergenic |
| TATCAATAGATCACTTAACA+AGG | 0.617363 | 1.3:+36114441 | MS.gene066409:CDS |
| GGAAGCCTTAGCATACCTGT+TGG | 0.618027 | 1.3:-36116829 | None:intergenic |
| CAACAGATACAACAACATGC+AGG | 0.634469 | 1.3:+36114543 | MS.gene066409:CDS |
| TCTTCACTACTGAGTCTGAG+TGG | 0.642115 | 1.3:-36117193 | None:intergenic |
| GGACCAATAAGAATCTGAGA+AGG | 0.643048 | 1.3:-36114484 | None:intergenic |
| ACAGGACAAGAGAATTGTGT+AGG | 0.653674 | 1.3:-36114505 | None:intergenic |
| AGAACTCATGAGAAGAACTG+TGG | 0.653790 | 1.3:+36117015 | MS.gene066409:CDS |
| CCTGGTGAACAACAATAGCA+AGG | 0.660333 | 1.3:-36116850 | None:intergenic |
| ATCAATAGATCACTTAACAA+GGG | 0.672990 | 1.3:+36114442 | MS.gene066409:CDS |
| TATCCTCAGATGCATATGTG+GGG | 0.710095 | 1.3:+36116757 | MS.gene066409:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAATATAATTTTTAAAA+GGG | + | chr1.3:36116090-36116109 | MS.gene066409:intron | 0.0% |
| !!! | TTAATAATATAATTTTTAAA+AGG | + | chr1.3:36116089-36116108 | MS.gene066409:intron | 0.0% |
| !! | ATTATTTACAATTAAATAGA+AGG | - | chr1.3:36116324-36116343 | None:intergenic | 10.0% |
| !! | TATAAATTACATTAAATTTG+AGG | + | chr1.3:36115593-36115612 | MS.gene066409:intron | 10.0% |
| !! | TTAATATATTATCATTTACT+TGG | - | chr1.3:36115335-36115354 | None:intergenic | 10.0% |
| !! | TTCTATTTAATTGTAAATAA+TGG | + | chr1.3:36116323-36116342 | MS.gene066409:intron | 10.0% |
| !!! | AAATAATGGTTTATATATTT+TGG | + | chr1.3:36116337-36116356 | MS.gene066409:intron | 10.0% |
| !!! | ATAAGAAAAAATTATCTTTT+TGG | + | chr1.3:36115136-36115155 | MS.gene066409:intron | 10.0% |
| !!! | TTATAAATTTCATTAATTTG+AGG | + | chr1.3:36115646-36115665 | MS.gene066409:intron | 10.0% |
| !! | AAACAAAAACTATTAATTGT+TGG | - | chr1.3:36115361-36115380 | None:intergenic | 15.0% |
| !! | TTTAATTAATTACACCTATA+TGG | - | chr1.3:36115074-36115093 | None:intergenic | 15.0% |
| !!! | ATAATAACTTCTTCTTTTTA+AGG | + | chr1.3:36116703-36116722 | MS.gene066409:intron | 15.0% |
| !!! | ATTATAAATTAACTTGAGAA+AGG | + | chr1.3:36116041-36116060 | MS.gene066409:intron | 15.0% |
| !!! | GTATTTTTTTCATGATAAAA+TGG | + | chr1.3:36115103-36115122 | MS.gene066409:intron | 15.0% |
| !!! | TGATTTTCTTAAATTATTAG+CGG | + | chr1.3:36114786-36114805 | MS.gene066409:intron | 15.0% |
| !!! | TTATAAATTAACTTGAGAAA+GGG | + | chr1.3:36116042-36116061 | MS.gene066409:intron | 15.0% |
| !!! | TTTTATGTGGATTAATAATT+AGG | - | chr1.3:36116489-36116508 | None:intergenic | 15.0% |
| !! | AAGAAAAATTTCAAAAGAAG+AGG | - | chr1.3:36114993-36115012 | None:intergenic | 20.0% |
| !! | ATATGAATTCAGTCTAAAAA+GGG | - | chr1.3:36115394-36115413 | None:intergenic | 20.0% |
| !! | CTATATATGATACAATTAGA+AGG | - | chr1.3:36115518-36115537 | None:intergenic | 20.0% |
| !! | TATATGAATTCAGTCTAAAA+AGG | - | chr1.3:36115395-36115414 | None:intergenic | 20.0% |
| !! | TGAAAAAACTCAAAAAATGT+TGG | - | chr1.3:36116612-36116631 | None:intergenic | 20.0% |
| !! | TGGACACTAAATTAATATTA+AGG | - | chr1.3:36114650-36114669 | None:intergenic | 20.0% |
| !! | TGTAATGATTATTTAACTCA+AGG | - | chr1.3:36115708-36115727 | None:intergenic | 20.0% |
| !!! | AAATTGAATTTCTTGAGTTT+TGG | + | chr1.3:36114909-36114928 | MS.gene066409:intron | 20.0% |
| !!! | CATATCATTTTTGTTTTATG+TGG | - | chr1.3:36116502-36116521 | None:intergenic | 20.0% |
| !!! | TGTTTTCAAAAGTATGAATT+TGG | - | chr1.3:36114890-36114909 | None:intergenic | 20.0% |
| !!! | TTTTAACAAAAAATGGTGAA+GGG | + | chr1.3:36116011-36116030 | MS.gene066409:intron | 20.0% |
| !!! | TTTTTAACAAAAAATGGTGA+AGG | + | chr1.3:36116010-36116029 | MS.gene066409:intron | 20.0% |
| ! | AAGTTCCACATATACATTAA+TGG | + | chr1.3:36115429-36115448 | MS.gene066409:intron | 25.0% |
| ! | ACACATTATAAAAGGAAACA+TGG | + | chr1.3:36116934-36116953 | MS.gene066409:CDS | 25.0% |
| ! | ATCAATAGATCACTTAACAA+GGG | + | chr1.3:36114442-36114461 | MS.gene066409:CDS | 25.0% |
| ! | ATTCCTAATTAAAATCTTGG+CGG | + | chr1.3:36116523-36116542 | MS.gene066409:intron | 25.0% |
| ! | CACATTATAAAAGGAAACAT+GGG | + | chr1.3:36116935-36116954 | MS.gene066409:CDS | 25.0% |
| ! | CACTTCAAACACATTATAAA+AGG | + | chr1.3:36116926-36116945 | MS.gene066409:CDS | 25.0% |
| ! | CATATAAATGTCATGTCAAA+AGG | + | chr1.3:36116194-36116213 | MS.gene066409:intron | 25.0% |
| ! | GAAGAAAAATAGAAAGTGAA+AGG | - | chr1.3:36115016-36115035 | None:intergenic | 25.0% |
| ! | GTAATAATCATCATTGATGA+AGG | - | chr1.3:36116550-36116569 | None:intergenic | 25.0% |
| ! | TATCAATAGATCACTTAACA+AGG | + | chr1.3:36114441-36114460 | MS.gene066409:CDS | 25.0% |
| ! | TATGTCCATTAATGTATATG+TGG | - | chr1.3:36115437-36115456 | None:intergenic | 25.0% |
| ! | TGCATTCCTAATTAAAATCT+TGG | + | chr1.3:36116520-36116539 | MS.gene066409:intron | 25.0% |
| !! | AAAGATCATATAAGAGCTTT+TGG | + | chr1.3:36117090-36117109 | MS.gene066409:CDS | 25.0% |
| !! | AAGATCATATAAGAGCTTTT+GGG | + | chr1.3:36117091-36117110 | MS.gene066409:CDS | 25.0% |
| !! | TAATAGAACTGAATTTTGCA+GGG | + | chr1.3:36115294-36115313 | MS.gene066409:intron | 25.0% |
| !! | TCAGATTCTATATATCCTTT+TGG | + | chr1.3:36115181-36115200 | MS.gene066409:intron | 25.0% |
| !! | TTAATAGAACTGAATTTTGC+AGG | + | chr1.3:36115293-36115312 | MS.gene066409:intron | 25.0% |
| AAAACTCAAAAAATGTTGGC+TGG | - | chr1.3:36116608-36116627 | None:intergenic | 30.0% | |
| AATGTATATGTGGAACTTTC+AGG | - | chr1.3:36115427-36115446 | None:intergenic | 30.0% | |
| ACAATTAAATAGAAGGCAAG+CGG | - | chr1.3:36116317-36116336 | None:intergenic | 30.0% | |
| ACTTGAATGAACCACATATA+CGG | - | chr1.3:36114846-36114865 | None:intergenic | 30.0% | |
| AGACTTCAATGTTGTACTAA+AGG | - | chr1.3:36115239-36115258 | None:intergenic | 30.0% | |
| AGGGAAATCATTATTAACAG+CGG | + | chr1.3:36116061-36116080 | MS.gene066409:intron | 30.0% | |
| ATAACAATGTCATGTCTTCT+AGG | + | chr1.3:36116223-36116242 | MS.gene066409:intron | 30.0% | |
| CATTTCACAATCAACTCAAT+GGG | - | chr1.3:36115979-36115998 | None:intergenic | 30.0% | |
| GAGTTGTTTAATCAACCAAA+AGG | - | chr1.3:36115199-36115218 | None:intergenic | 30.0% | |
| GATTGTAGTCATAAAGTAGA+AGG | + | chr1.3:36114244-36114263 | MS.gene066409:CDS | 30.0% | |
| GTAGCTAAATGGTATGAATT+TGG | - | chr1.3:36114670-36114689 | None:intergenic | 30.0% | |
| GTATGAATTTGGAAGAAAAG+TGG | - | chr1.3:36114879-36114898 | None:intergenic | 30.0% | |
| TATGTGTAGAAAATGTGGTA+AGG | + | chr1.3:36116969-36116988 | MS.gene066409:CDS | 30.0% | |
| TCATTTCACAATCAACTCAA+TGG | - | chr1.3:36115980-36115999 | None:intergenic | 30.0% | |
| TCTTAAATTATTAGCGGTGT+CGG | + | chr1.3:36114792-36114811 | MS.gene066409:intron | 30.0% | |
| TCTTCGTTCTTTAACCATAT+AGG | + | chr1.3:36115057-36115076 | MS.gene066409:intron | 30.0% | |
| TTAAGGAGAAGAAGATCTAT+AGG | - | chr1.3:36114633-36114652 | None:intergenic | 30.0% | |
| TTACAACTAAGTGATCTCTA+TGG | + | chr1.3:36115860-36115879 | MS.gene066409:intron | 30.0% | |
| TTCCTAATTAAAATCTTGGC+GGG | + | chr1.3:36116524-36116543 | MS.gene066409:intron | 30.0% | |
| TTTAGTGTAATCATATGCGT+CGG | - | chr1.3:36114761-36114780 | None:intergenic | 30.0% | |
| TTTGGTTGATTAAACAACTC+AGG | + | chr1.3:36115199-36115218 | MS.gene066409:intron | 30.0% | |
| ! | AGTTGCAAAATCAAGTTGTT+AGG | + | chr1.3:36116428-36116447 | MS.gene066409:intron | 30.0% |
| ! | CCACATTTTCTACACATAAA+AGG | - | chr1.3:36116967-36116986 | None:intergenic | 30.0% |
| ! | CCTTTTATGTGTAGAAAATG+TGG | + | chr1.3:36116964-36116983 | MS.gene066409:CDS | 30.0% |
| ! | GTTCTGATTTTAAGCATAAG+CGG | + | chr1.3:36117061-36117080 | MS.gene066409:CDS | 30.0% |
| ! | GTTGCAAAATCAAGTTGTTA+GGG | + | chr1.3:36116429-36116448 | MS.gene066409:intron | 30.0% |
| ! | TCATTAATTTGAGGTGCAAA+AGG | + | chr1.3:36115655-36115674 | MS.gene066409:intron | 30.0% |
| !! | AGTGTTCTGAAATCTTTCAA+TGG | - | chr1.3:36116910-36116929 | None:intergenic | 30.0% |
| !!! | AATTGATGGTTTTGAAGAAG+AGG | + | chr1.3:36117134-36117153 | MS.gene066409:CDS | 30.0% |
| !!! | GTGTTAAGGTTTTGAAATGA+AGG | - | chr1.3:36114607-36114626 | None:intergenic | 30.0% |
| AAAATGACCTTGGGAAAAGA+GGG | - | chr1.3:36115038-36115057 | None:intergenic | 35.0% | |
| AAGAACGAAGAAAATGACCT+TGG | - | chr1.3:36115048-36115067 | None:intergenic | 35.0% | |
| ACTCATCAACCTAATGATAG+TGG | - | chr1.3:36115836-36115855 | None:intergenic | 35.0% | |
| ACTCCTTCTCAGATTCTTAT+TGG | + | chr1.3:36114481-36114500 | MS.gene066409:CDS | 35.0% | |
| AGAACGAAGAAAATGACCTT+GGG | - | chr1.3:36115047-36115066 | None:intergenic | 35.0% | |
| AGTTCTATTAAGCAGTTGCA+TGG | - | chr1.3:36115284-36115303 | None:intergenic | 35.0% | |
| AGTTGCATGGCAAAATACAT+AGG | - | chr1.3:36115271-36115290 | None:intergenic | 35.0% | |
| ATAAGAATCTGAGAAGGAGT+AGG | - | chr1.3:36114481-36114500 | None:intergenic | 35.0% | |
| CAATTAAATAGAAGGCAAGC+GGG | - | chr1.3:36116316-36116335 | None:intergenic | 35.0% | |
| CACTTAACAAGGGTCAATAT+TGG | + | chr1.3:36114452-36114471 | MS.gene066409:CDS | 35.0% | |
| CATGGATCACAATACAGAAA+AGG | + | chr1.3:36116781-36116800 | MS.gene066409:CDS | 35.0% | |
| CATGTTGTTGTATCTGTTGA+AGG | - | chr1.3:36114542-36114561 | None:intergenic | 35.0% | |
| CTCATCAACCTAATGATAGT+GGG | - | chr1.3:36115835-36115854 | None:intergenic | 35.0% | |
| CTCTATGGAAATAGACAAGA+GGG | + | chr1.3:36115875-36115894 | MS.gene066409:intron | 35.0% | |
| GAAGGAAAAGAAGATCATGA+AGG | + | chr1.3:36114262-36114281 | MS.gene066409:CDS | 35.0% | |
| TAAGAATCTGAGAAGGAGTA+GGG | - | chr1.3:36114480-36114499 | None:intergenic | 35.0% | |
| TCAAGAGGGTTCAATATCTT+TGG | + | chr1.3:36115795-36115814 | MS.gene066409:intron | 35.0% | |
| TCTCTATGGAAATAGACAAG+AGG | + | chr1.3:36115874-36115893 | MS.gene066409:intron | 35.0% | |
| TGACTGTTGCACTTCATATA+GGG | + | chr1.3:36114287-36114306 | MS.gene066409:CDS | 35.0% | |
| TTATCCTCAGATGCATATGT+GGG | + | chr1.3:36116756-36116775 | MS.gene066409:intron | 35.0% | |
| TTGCAATCTCAGAAGAACTA+GGG | - | chr1.3:36114321-36114340 | None:intergenic | 35.0% | |
| ! | AAGCTTTGGTATTGTCTTTG+TGG | + | chr1.3:36117039-36117058 | MS.gene066409:CDS | 35.0% |
| ! | ATATGTGGAACTTTCAGGTA+TGG | - | chr1.3:36115422-36115441 | None:intergenic | 35.0% |
| ! | ATTTTGCAACTTCAAGTGAG+GGG | - | chr1.3:36116419-36116438 | None:intergenic | 35.0% |
| ! | GATTTTGCAACTTCAAGTGA+GGG | - | chr1.3:36116420-36116439 | None:intergenic | 35.0% |
| ! | TGATTTTGCAACTTCAAGTG+AGG | - | chr1.3:36116421-36116440 | None:intergenic | 35.0% |
| ! | TTTGCAAAGGTGTAGCTAAA+TGG | - | chr1.3:36114681-36114700 | None:intergenic | 35.0% |
| !! | AGATCTATAGGTTGGTGTTA+AGG | - | chr1.3:36114621-36114640 | None:intergenic | 35.0% |
| !! | TTGTAAGAGTTTTGTCCATG+AGG | - | chr1.3:36116466-36116485 | None:intergenic | 35.0% |
| !!! | AAGGTTTTGAAATGAAGGAG+AGG | - | chr1.3:36114602-36114621 | None:intergenic | 35.0% |
| !!! | ATTGGTTTTGTCATCCGAAA+AGG | + | chr1.3:36116270-36116289 | MS.gene066409:intron | 35.0% |
| AAAGGACCAGAATCTCTAAG+AGG | + | chr1.3:36116799-36116818 | MS.gene066409:CDS | 40.0% | |
| AATGTTGTGTTCACGAGGAT+TGG | + | chr1.3:36116252-36116271 | MS.gene066409:intron | 40.0% | |
| ACAGGACAAGAGAATTGTGT+AGG | - | chr1.3:36114508-36114527 | None:intergenic | 40.0% | |
| AGAACTCATGAGAAGAACTG+TGG | + | chr1.3:36117015-36117034 | MS.gene066409:CDS | 40.0% | |
| AGAAGAACTGTGGAAAGCTT+TGG | + | chr1.3:36117025-36117044 | MS.gene066409:CDS | 40.0% | |
| ATAGAAGGAGGGATTTGCAA+AGG | - | chr1.3:36114694-36114713 | None:intergenic | 40.0% | |
| CAACAGATACAACAACATGC+AGG | + | chr1.3:36114543-36114562 | MS.gene066409:CDS | 40.0% | |
| CTTATCCTCAGATGCATATG+TGG | + | chr1.3:36116755-36116774 | MS.gene066409:intron | 40.0% | |
| GAAAATGACCTTGGGAAAAG+AGG | - | chr1.3:36115039-36115058 | None:intergenic | 40.0% | |
| GACAATGAGACACTTCAAGA+GGG | + | chr1.3:36115781-36115800 | MS.gene066409:intron | 40.0% | |
| GAGGGGTTCAAATTTCATGT+AGG | - | chr1.3:36116402-36116421 | None:intergenic | 40.0% | |
| GGACCAATAAGAATCTGAGA+AGG | - | chr1.3:36114487-36114506 | None:intergenic | 40.0% | |
| GGAGAAGAAGATCTATAGGT+TGG | - | chr1.3:36114629-36114648 | None:intergenic | 40.0% | |
| GTCTCAAACCCACTATCATT+AGG | + | chr1.3:36115824-36115843 | MS.gene066409:intron | 40.0% | |
| GTGACTGTTGCACTTCATAT+AGG | + | chr1.3:36114286-36114305 | MS.gene066409:CDS | 40.0% | |
| GTTGCAATCTCAGAAGAACT+AGG | - | chr1.3:36114322-36114341 | None:intergenic | 40.0% | |
| TATCCTCAGATGCATATGTG+GGG | + | chr1.3:36116757-36116776 | MS.gene066409:intron | 40.0% | |
| TATTAGCGACGATTCGTCTT+CGG | + | chr1.3:36114405-36114424 | MS.gene066409:CDS | 40.0% | |
| TCTACGCAGCAATTCTTCTT+TGG | - | chr1.3:36115758-36115777 | None:intergenic | 40.0% | |
| TCTTGTTCAACTTCAGAAGC+AGG | - | chr1.3:36117165-36117184 | None:intergenic | 40.0% | |
| TGACAATGAGACACTTCAAG+AGG | + | chr1.3:36115780-36115799 | MS.gene066409:intron | 40.0% | |
| TGTGTACCTCTTAGAGATTC+TGG | - | chr1.3:36116808-36116827 | None:intergenic | 40.0% | |
| ! | CATGCTGCTTATGGAATTGA+TGG | + | chr1.3:36117120-36117139 | MS.gene066409:CDS | 40.0% |
| ! | TCTTTCAATGGCTTTGCTCT+TGG | - | chr1.3:36116898-36116917 | None:intergenic | 40.0% |
| ! | TTGAAGGTTTTGCAGCAAAC+AGG | - | chr1.3:36114526-36114545 | None:intergenic | 40.0% |
| ! | TTTTCTTCCCTCTTTTCCCA+AGG | + | chr1.3:36115028-36115047 | MS.gene066409:intron | 40.0% |
| !! | ATGATAGTGGGTTTGAGACT+TGG | - | chr1.3:36115823-36115842 | None:intergenic | 40.0% |
| !! | CATATAAGAGCTTTTGGGAG+TGG | + | chr1.3:36117096-36117115 | MS.gene066409:CDS | 40.0% |
| !!! | CTTTTGCTGTTAGAGGAGAT+TGG | + | chr1.3:36116992-36117011 | MS.gene066409:CDS | 40.0% |
| AGGGATGAATTGACACCTCA+TGG | + | chr1.3:36116448-36116467 | MS.gene066409:intron | 45.0% | |
| ATACGGACACAGACACAGTA+TGG | - | chr1.3:36114829-36114848 | None:intergenic | 45.0% | |
| ATCTCAGAAGAACTAGGGCT+TGG | - | chr1.3:36114316-36114335 | None:intergenic | 45.0% | |
| CACAACCAACAGGTATGCTA+AGG | + | chr1.3:36116824-36116843 | MS.gene066409:CDS | 45.0% | |
| CCATGAATGTTGTGTTCACG+AGG | + | chr1.3:36116247-36116266 | MS.gene066409:intron | 45.0% | |
| CCTCGTGAACACAACATTCA+TGG | - | chr1.3:36116250-36116269 | None:intergenic | 45.0% | |
| CCTGGTGAACAACAATAGCA+AGG | - | chr1.3:36116853-36116872 | None:intergenic | 45.0% | |
| TCAATGTTGTTCCTGCAACC+TGG | - | chr1.3:36116871-36116890 | None:intergenic | 45.0% | |
| TGTGTCTGTGTCCGTATATG+TGG | + | chr1.3:36114832-36114851 | MS.gene066409:intron | 45.0% | |
| ! | ATTGTTGTTCACCAGGTTGC+AGG | + | chr1.3:36116857-36116876 | MS.gene066409:CDS | 45.0% |
| ! | CTAAGAGGTACACAACCAAC+AGG | + | chr1.3:36116814-36116833 | MS.gene066409:CDS | 45.0% |
| ! | GTGGAACTTTCAGGTATGGA+AGG | - | chr1.3:36115418-36115437 | None:intergenic | 45.0% |
| !! | CCTTGCTATTGTTGTTCACC+AGG | + | chr1.3:36116850-36116869 | MS.gene066409:CDS | 45.0% |
| !!! | GGCCCGCCAAGATTTTAATT+AGG | - | chr1.3:36116529-36116548 | None:intergenic | 45.0% |
| !!! | GGTAAGGCTTTTGCTGTTAG+AGG | + | chr1.3:36116985-36117004 | MS.gene066409:CDS | 45.0% |
| !!! | ATAATTTTTTTAACAAAAAA+TGG | + | chr1.3:36116004-36116023 | MS.gene066409:intron | 5.0% |
| ATCCCTCCTTCTATGAAGCG+CGG | + | chr1.3:36114700-36114719 | MS.gene066409:intron | 50.0% | |
| CAGATGCATATGTGGGGACA+TGG | + | chr1.3:36116763-36116782 | MS.gene066409:intron | 50.0% | |
| GGAAGCCTTAGCATACCTGT+TGG | - | chr1.3:36116832-36116851 | None:intergenic | 50.0% | |
| TGTCCCCACATATGCATCTG+AGG | - | chr1.3:36116763-36116782 | None:intergenic | 50.0% | |
| ! | GCTGCGTCGTTAGACCTTTT+CGG | - | chr1.3:36116287-36116306 | None:intergenic | 50.0% |
| GAGTGTCCGCGCTTCATAGA+AGG | - | chr1.3:36114709-36114728 | None:intergenic | 55.0% | |
| GCGCGGACACTCATTAGATC+AGG | + | chr1.3:36114717-36114736 | MS.gene066409:intron | 55.0% | |
| GTCCGCGCTTCATAGAAGGA+GGG | - | chr1.3:36114705-36114724 | None:intergenic | 55.0% | |
| TGTCCGCGCTTCATAGAAGG+AGG | - | chr1.3:36114706-36114725 | None:intergenic | 55.0% | |
| ! | GGGAGTGGTCATGCTGCTTA+TGG | + | chr1.3:36117111-36117130 | MS.gene066409:CDS | 55.0% |
| AGCGACGATTCGTCTTCGGC+TGG | + | chr1.3:36114409-36114428 | MS.gene066409:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 36114232 | 36117209 | 36114232 | ID=MS.gene066409 |
| chr1.3 | mRNA | 36114232 | 36117209 | 36114232 | ID=MS.gene066409.t1;Parent=MS.gene066409 |
| chr1.3 | exon | 36114232 | 36114564 | 36114232 | ID=MS.gene066409.t1.exon1;Parent=MS.gene066409.t1 |
| chr1.3 | CDS | 36114232 | 36114564 | 36114232 | ID=cds.MS.gene066409.t1;Parent=MS.gene066409.t1 |
| chr1.3 | exon | 36116766 | 36117209 | 36116766 | ID=MS.gene066409.t1.exon2;Parent=MS.gene066409.t1 |
| chr1.3 | CDS | 36116766 | 36117209 | 36116766 | ID=cds.MS.gene066409.t1;Parent=MS.gene066409.t1 |
| Gene Sequence |
| Protein sequence |
