Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066468.t1 | XP_003629046.2 | 96.3 | 189 | 7 | 0 | 1 | 189 | 129 | 317 | 3.00E-103 | 384.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066468.t1 | K7K424 | 60.3 | 189 | 75 | 0 | 1 | 189 | 141 | 329 | 6.4e-70 | 265.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066468.t1 | G7L7X0 | 96.3 | 189 | 7 | 0 | 1 | 189 | 129 | 317 | 2.2e-103 | 384.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene066468 | 0.823588 | 1.28E-53 | -1.69E-46 |
| MS.gene05016 | MS.gene066468 | 0.810104 | 1.36E-50 | -1.69E-46 |
| MS.gene055357 | MS.gene066468 | 0.808307 | 3.30E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene066468 | 0.807312 | 5.38E-50 | -1.69E-46 |
| MS.gene055359 | MS.gene066468 | 0.805662 | 1.20E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066468.t1 | MTR_8g072540 | 96.296 | 189 | 7 | 0 | 1 | 189 | 129 | 317 | 8.80e-135 | 380 |
| MS.gene066468.t1 | MTR_1g036110 | 80.319 | 188 | 37 | 0 | 2 | 189 | 127 | 314 | 9.64e-113 | 324 |
| MS.gene066468.t1 | MTR_5g024990 | 65.608 | 189 | 65 | 0 | 1 | 189 | 133 | 321 | 2.13e-94 | 277 |
| MS.gene066468.t1 | MTR_8g072550 | 61.165 | 206 | 63 | 1 | 1 | 189 | 130 | 335 | 1.28e-87 | 261 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066468.t1 | AT3G51520 | 57.143 | 189 | 80 | 1 | 1 | 189 | 127 | 314 | 4.68e-81 | 243 |
Find 41 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATCTTTCCATTAATATTC+TGG | 0.193871 | 8.2:-31560819 | MS.gene066468:CDS |
| GTCCATATTTGTCTTAAATA+TGG | 0.246667 | 8.2:+31561951 | None:intergenic |
| TTAATATTCTGGGGAAAATT+CGG | 0.275511 | 8.2:-31560808 | MS.gene066468:CDS |
| ACCTGCTCTGATGTTGGTTC+TGG | 0.312447 | 8.2:+31559184 | None:intergenic |
| TATAAGTGGTGGAGAGCTTC+TGG | 0.337143 | 8.2:-31560874 | MS.gene066468:CDS |
| TACCATATTTAAGACAAATA+TGG | 0.339295 | 8.2:-31561953 | MS.gene066468:CDS |
| TAATATTCTGGGGAAAATTC+GGG | 0.361300 | 8.2:-31560807 | MS.gene066468:intron |
| GATCTTTCCATTAATATTCT+GGG | 0.370352 | 8.2:-31560818 | MS.gene066468:CDS |
| AGACAAATATGGACATGGTT+AGG | 0.408270 | 8.2:-31561942 | MS.gene066468:CDS |
| AGAAATCTTATATTCGGAAT+AGG | 0.414742 | 8.2:+31562129 | None:intergenic |
| CTGACTAGAAATCTTATATT+CGG | 0.422977 | 8.2:+31562123 | None:intergenic |
| GGTGGTGGGTAGACCAATTC+AGG | 0.437869 | 8.2:-31559218 | MS.gene066468:CDS |
| AACAAACTCACTATGTACTT+TGG | 0.442455 | 8.2:+31558923 | None:intergenic |
| ACCTGACCAAAGCAGAAAAC+CGG | 0.468692 | 8.2:+31561573 | None:intergenic |
| ACATACAATGGATTCTTGAA+TGG | 0.469129 | 8.2:+31559241 | None:intergenic |
| TTAATTTCTTTGTTGGTGGC+TGG | 0.476264 | 8.2:-31561894 | MS.gene066468:CDS |
| AAATTTAATTTCTTTGTTGG+TGG | 0.480720 | 8.2:-31561898 | MS.gene066468:CDS |
| GAATCCATTGTATGTGGTGG+TGG | 0.497824 | 8.2:-31559233 | MS.gene066468:CDS |
| AATGGATTCTTGAATGGTAC+AGG | 0.498388 | 8.2:+31559247 | None:intergenic |
| CAAAGCAGAAAACCGGAACA+AGG | 0.515171 | 8.2:+31561580 | None:intergenic |
| GTATATCTTAAAGAAAGAAA+AGG | 0.528178 | 8.2:-31561636 | MS.gene066468:CDS |
| TGTTCGAATAGCAATGGAGA+TGG | 0.535110 | 8.2:-31561610 | MS.gene066468:CDS |
| AGGATTTGTTCGAATAGCAA+TGG | 0.537757 | 8.2:-31561616 | MS.gene066468:CDS |
| TCCAGAACCAACATCAGAGC+AGG | 0.538241 | 8.2:-31559185 | MS.gene066468:intron |
| GAACGACACAAGACTCAAGC+TGG | 0.541089 | 8.2:-31558879 | MS.gene066468:CDS |
| GTTCGAATAGCAATGGAGAT+GGG | 0.558696 | 8.2:-31561609 | MS.gene066468:CDS |
| ATTCAAGAATCCATTGTATG+TGG | 0.565867 | 8.2:-31559239 | MS.gene066468:CDS |
| CTACCCACCACCACATACAA+TGG | 0.566505 | 8.2:+31559229 | None:intergenic |
| ATCTTTCCATTAATATTCTG+GGG | 0.566749 | 8.2:-31560817 | MS.gene066468:CDS |
| AAGCAGAAAACCGGAACAAG+GGG | 0.574699 | 8.2:+31561582 | None:intergenic |
| CGTAGACAGATATCTATAAG+TGG | 0.577657 | 8.2:-31560888 | MS.gene066468:intron |
| AAAGCAGAAAACCGGAACAA+GGG | 0.608373 | 8.2:+31561581 | None:intergenic |
| GTGCATACCTGCTCTGATGT+TGG | 0.609247 | 8.2:+31559178 | None:intergenic |
| AGTGTTTCTCTCATTCCACC+AGG | 0.615356 | 8.2:+31561852 | None:intergenic |
| ATTTAAGACAAATATGGACA+TGG | 0.624707 | 8.2:-31561947 | MS.gene066468:CDS |
| AGACAGATATCTATAAGTGG+TGG | 0.640907 | 8.2:-31560885 | MS.gene066468:CDS |
| CAAGAATCCATTGTATGTGG+TGG | 0.680708 | 8.2:-31559236 | MS.gene066468:CDS |
| AGTTGCATTATAGTACCTGG+TGG | 0.685008 | 8.2:-31561867 | MS.gene066468:CDS |
| AATCCATTGTATGTGGTGGT+GGG | 0.692749 | 8.2:-31559232 | MS.gene066468:CDS |
| GATAGTTGCATTATAGTACC+TGG | 0.700909 | 8.2:-31561870 | MS.gene066468:CDS |
| AGCAGAAAACCGGAACAAGG+GGG | 0.711833 | 8.2:+31561583 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATATTCTTATGATT+CGG | + | chr8.2:31559584-31559603 | None:intergenic | 10.0% |
| !!! | ATTAAGAATCATATTTTAAT+TGG | - | chr8.2:31558973-31558992 | MS.gene066468:intron | 10.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr8.2:31561063-31561082 | MS.gene066468:intron | 15.0% |
| !! | AATAACTAAGTTAATAATAC+TGG | - | chr8.2:31561450-31561469 | MS.gene066468:intron | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr8.2:31561064-31561083 | None:intergenic | 15.0% |
| !! | ATAAAATATTCTTATGATTC+GGG | + | chr8.2:31559583-31559602 | None:intergenic | 15.0% |
| !! | CATTGTATATATTTCTTATT+AGG | + | chr8.2:31559314-31559333 | None:intergenic | 15.0% |
| !! | TAATCCTTCAAAAAAAAAAA+AGG | + | chr8.2:31560702-31560721 | None:intergenic | 15.0% |
| !! | TATCTAATTATATACTAGAA+AGG | + | chr8.2:31560035-31560054 | None:intergenic | 15.0% |
| !!! | AATTTTATACTTACCATATA+TGG | - | chr8.2:31561264-31561283 | MS.gene066468:intron | 15.0% |
| !!! | AATTTTTATTTGTTGTATAG+TGG | - | chr8.2:31559535-31559554 | MS.gene066468:intron | 15.0% |
| !!! | ATAACCTTTTTTTTTTTTGA+AGG | - | chr8.2:31560695-31560714 | MS.gene066468:intron | 15.0% |
| !!! | ATCTTCAAAATATTTTTAGT+TGG | + | chr8.2:31561944-31561963 | None:intergenic | 15.0% |
| !!! | GAAAAATTTAATTTCTTTGT+TGG | - | chr8.2:31559079-31559098 | MS.gene066468:intron | 15.0% |
| !!! | GTACTTTTTTTTTTGTTAAA+AGG | - | chr8.2:31561964-31561983 | MS.gene066468:CDS | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr8.2:31561087-31561106 | MS.gene066468:intron | 15.0% |
| !!! | TCATTTTGAAACAATTTTTT+TGG | - | chr8.2:31561189-31561208 | MS.gene066468:intron | 15.0% |
| !!! | TTATTTATCCTTTTTTACTT+TGG | - | chr8.2:31562024-31562043 | MS.gene066468:intron | 15.0% |
| !!! | TTCATTTATTTTTGTAAGAA+CGG | - | chr8.2:31561302-31561321 | MS.gene066468:intron | 15.0% |
| !!! | TTTTATTTCCATTTTGTATA+AGG | - | chr8.2:31559916-31559935 | MS.gene066468:intron | 15.0% |
| !! | AAAAAAGATTATGTATTGTG+TGG | + | chr8.2:31560835-31560854 | None:intergenic | 20.0% |
| !! | AAAAATTCATATTCTTAGAG+AGG | + | chr8.2:31559522-31559541 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr8.2:31561073-31561092 | None:intergenic | 20.0% |
| !! | AAGAAATCACTTTATACAAT+AGG | + | chr8.2:31560309-31560328 | None:intergenic | 20.0% |
| !! | AAGTCTTACACTAAATTAAA+TGG | + | chr8.2:31561640-31561659 | None:intergenic | 20.0% |
| !! | ACAAAGTTTCAATTGAAAAA+TGG | - | chr8.2:31559209-31559228 | MS.gene066468:CDS | 20.0% |
| !! | ACCTTTAAACATTATGTTTA+TGG | - | chr8.2:31560729-31560748 | MS.gene066468:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr8.2:31561150-31561169 | MS.gene066468:intron | 20.0% |
| !! | ATGAGTACATGAATATTAAA+GGG | + | chr8.2:31560586-31560605 | None:intergenic | 20.0% |
| !! | GTATATCTTAAAGAAAGAAA+AGG | - | chr8.2:31559344-31559363 | MS.gene066468:intron | 20.0% |
| !! | TATAACATTCAAACCATATA+TGG | + | chr8.2:31561280-31561299 | None:intergenic | 20.0% |
| !! | TATGAAATATCTATATGTTG+TGG | - | chr8.2:31559701-31559720 | MS.gene066468:intron | 20.0% |
| !! | TATGAGTACATGAATATTAA+AGG | + | chr8.2:31560587-31560606 | None:intergenic | 20.0% |
| !! | TCCATAAACATAATGTTTAA+AGG | + | chr8.2:31560733-31560752 | None:intergenic | 20.0% |
| !! | TTATGAATGACATAAAAGTT+GGG | + | chr8.2:31561886-31561905 | None:intergenic | 20.0% |
| !! | TTTATGAATGACATAAAAGT+TGG | + | chr8.2:31561887-31561906 | None:intergenic | 20.0% |
| !! | TTTCAAATATTGATCTATCA+TGG | + | chr8.2:31559761-31559780 | None:intergenic | 20.0% |
| !!! | AAATTTAATTTCTTTGTTGG+TGG | - | chr8.2:31559082-31559101 | MS.gene066468:intron | 20.0% |
| !!! | ATTTCACGTAAAAGTATATT+GGG | - | chr8.2:31561351-31561370 | MS.gene066468:intron | 20.0% |
| !!! | ATTTTTGGATGGAAATAATT+GGG | + | chr8.2:31561837-31561856 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTCATTTGCTAAC+TGG | + | chr8.2:31561421-31561440 | None:intergenic | 20.0% |
| !!! | CCTAAAATATATGTTTTTGA+GGG | - | chr8.2:31561578-31561597 | MS.gene066468:CDS | 20.0% |
| !!! | TACCATATTTAAGACAAATA+TGG | - | chr8.2:31559027-31559046 | MS.gene066468:intron | 20.0% |
| !!! | TATTTCACGTAAAAGTATAT+TGG | - | chr8.2:31561350-31561369 | MS.gene066468:intron | 20.0% |
| !!! | TCCTAAAATATATGTTTTTG+AGG | - | chr8.2:31561577-31561596 | MS.gene066468:CDS | 20.0% |
| !!! | TCTTCATTTTAGTAAGTATA+TGG | + | chr8.2:31560904-31560923 | None:intergenic | 20.0% |
| !!! | TGTACTTCTAAAATGATTTT+TGG | + | chr8.2:31561852-31561871 | None:intergenic | 20.0% |
| !!! | TTTTAACATTTCCAAATGAA+CGG | - | chr8.2:31560851-31560870 | MS.gene066468:CDS | 20.0% |
| !!! | TTTTTTTTCATTTGCTAACT+GGG | + | chr8.2:31561420-31561439 | None:intergenic | 20.0% |
| ! | AAAGGTTATTCATTAAGATG+TGG | + | chr8.2:31560684-31560703 | None:intergenic | 25.0% |
| ! | AACTTCGACAAATGATATTT+AGG | + | chr8.2:31559965-31559984 | None:intergenic | 25.0% |
| ! | AATGATTAAGAGAAAGAGAT+TGG | - | chr8.2:31561030-31561049 | MS.gene066468:intron | 25.0% |
| ! | ACCTAAAACCAAAGTAAAAA+AGG | + | chr8.2:31562035-31562054 | None:intergenic | 25.0% |
| ! | AGAAATCTTATATTCGGAAT+AGG | + | chr8.2:31558854-31558873 | None:intergenic | 25.0% |
| ! | AGATCTTTCCATTAATATTC+TGG | - | chr8.2:31560161-31560180 | MS.gene066468:intron | 25.0% |
| ! | ATCTTTCCATTAATATTCTG+GGG | - | chr8.2:31560163-31560182 | MS.gene066468:intron | 25.0% |
| ! | ATTACTCTATTCCAATTAAG+AGG | + | chr8.2:31561381-31561400 | None:intergenic | 25.0% |
| ! | CTGACTAGAAATCTTATATT+CGG | + | chr8.2:31558860-31558879 | None:intergenic | 25.0% |
| ! | CTTACTAAAATGAAGATTGA+TGG | - | chr8.2:31560908-31560927 | MS.gene066468:intron | 25.0% |
| ! | GATATTTAGGTAAAAGTTCA+AGG | + | chr8.2:31559952-31559971 | None:intergenic | 25.0% |
| ! | GATCTTTCCATTAATATTCT+GGG | - | chr8.2:31560162-31560181 | MS.gene066468:intron | 25.0% |
| ! | GTCCATATTTGTCTTAAATA+TGG | + | chr8.2:31559032-31559051 | None:intergenic | 25.0% |
| ! | TACAAAAATAAGTGACCTAA+AGG | - | chr8.2:31561910-31561929 | MS.gene066468:CDS | 25.0% |
| ! | TTGTTAATGAAGCAGATATT+TGG | + | chr8.2:31559645-31559664 | None:intergenic | 25.0% |
| !! | AAAAATCTTTTTGACAATGG+TGG | + | chr8.2:31560547-31560566 | None:intergenic | 25.0% |
| !! | AATTTTCCCCAGAATATTAA+TGG | + | chr8.2:31560172-31560191 | None:intergenic | 25.0% |
| !! | ATTTAAGACAAATATGGACA+TGG | - | chr8.2:31559033-31559052 | MS.gene066468:intron | 25.0% |
| !! | CCCTCAAAAACATATATTTT+AGG | + | chr8.2:31561581-31561600 | None:intergenic | 25.0% |
| !! | GTCAAAAATCTTTTTGACAA+TGG | + | chr8.2:31560550-31560569 | None:intergenic | 25.0% |
| !! | TTAATATTCTGGGGAAAATT+CGG | - | chr8.2:31560172-31560191 | MS.gene066468:intron | 25.0% |
| !!! | AAACGACACTCATTTTTAAA+CGG | + | chr8.2:31560981-31561000 | None:intergenic | 25.0% |
| !!! | AATGAGAGAAACACTTTTTA+TGG | - | chr8.2:31559136-31559155 | MS.gene066468:intron | 25.0% |
| !!! | ATATCATCAGTATGTTTTTG+AGG | + | chr8.2:31561527-31561546 | None:intergenic | 25.0% |
| !!! | CTTCTAAAATGATTTTTGGA+TGG | + | chr8.2:31561848-31561867 | None:intergenic | 25.0% |
| !!! | GATTTTTGGATGGAAATAAT+TGG | + | chr8.2:31561838-31561857 | None:intergenic | 25.0% |
| !!! | GCATCTTTTTATTTTCCTTT+GGG | - | chr8.2:31560068-31560087 | MS.gene066468:intron | 25.0% |
| !!! | GTTAATCCATTGATTCATTT+AGG | - | chr8.2:31560465-31560484 | MS.gene066468:intron | 25.0% |
| !!! | TATCATCAGTATGTTTTTGA+GGG | + | chr8.2:31561526-31561545 | None:intergenic | 25.0% |
| !!! | TCCTTTTTTACTTTGGTTTT+AGG | - | chr8.2:31562031-31562050 | MS.gene066468:intron | 25.0% |
| !!! | TGCATCTTTTTATTTTCCTT+TGG | - | chr8.2:31560067-31560086 | MS.gene066468:intron | 25.0% |
| !!! | TTAAAAATGAGTGTCGTTTT+AGG | - | chr8.2:31560982-31561001 | MS.gene066468:intron | 25.0% |
| AACAAACTCACTATGTACTT+TGG | + | chr8.2:31562060-31562079 | None:intergenic | 30.0% | |
| AGATTTGTGTATATCAAGTG+TGG | + | chr8.2:31560434-31560453 | None:intergenic | 30.0% | |
| AGTAAGTATATGGAAACTGA+AGG | + | chr8.2:31560894-31560913 | None:intergenic | 30.0% | |
| ATTCAAGAATCCATTGTATG+TGG | - | chr8.2:31561741-31561760 | MS.gene066468:intron | 30.0% | |
| CTTATTAGGAGCAAAATCAA+TGG | + | chr8.2:31559300-31559319 | None:intergenic | 30.0% | |
| GATTTGTGTATATCAAGTGT+GGG | + | chr8.2:31560433-31560452 | None:intergenic | 30.0% | |
| GTGAAAACAAAGTAAAGAGA+TGG | + | chr8.2:31560228-31560247 | None:intergenic | 30.0% | |
| TTTCTTTCGAAGAGAACAAT+TGG | + | chr8.2:31560254-31560273 | None:intergenic | 30.0% | |
| TTTGTTAAAAGGAGTTGTCA+TGG | - | chr8.2:31561975-31561994 | MS.gene066468:intron | 30.0% | |
| ! | ACATACAATGGATTCTTGAA+TGG | + | chr8.2:31561742-31561761 | None:intergenic | 30.0% |
| ! | AGATTTTTGACACAATGAGT+CGG | - | chr8.2:31560559-31560578 | MS.gene066468:intron | 30.0% |
| ! | GTAATGTGCAGAGTATTAAT+TGG | - | chr8.2:31561112-31561131 | MS.gene066468:intron | 30.0% |
| ! | TAATATTCTGGGGAAAATTC+GGG | - | chr8.2:31560173-31560192 | MS.gene066468:intron | 30.0% |
| ! | TTCCATTTTGTATAAGGACT+CGG | - | chr8.2:31559922-31559941 | MS.gene066468:intron | 30.0% |
| !! | AATTGGTCTCTTGCATTTTA+TGG | - | chr8.2:31558990-31559009 | MS.gene066468:intron | 30.0% |
| !! | GAAACACTTTTTATGGAACA+TGG | - | chr8.2:31559143-31559162 | MS.gene066468:intron | 30.0% |
| AGACAAATATGGACATGGTT+AGG | - | chr8.2:31559038-31559057 | MS.gene066468:intron | 35.0% | |
| AGACAGATATCTATAAGTGG+TGG | - | chr8.2:31560095-31560114 | MS.gene066468:intron | 35.0% | |
| ATCCGAGTCCTTATACAAAA+TGG | + | chr8.2:31559927-31559946 | None:intergenic | 35.0% | |
| ATTTGTCATCACGTCTGATA+TGG | - | chr8.2:31559833-31559852 | MS.gene066468:intron | 35.0% | |
| CATACCACTATTGGATAAAG+AGG | - | chr8.2:31560603-31560622 | MS.gene066468:intron | 35.0% | |
| CGTAGACAGATATCTATAAG+TGG | - | chr8.2:31560092-31560111 | MS.gene066468:intron | 35.0% | |
| GATAGTTGCATTATAGTACC+TGG | - | chr8.2:31559110-31559129 | MS.gene066468:intron | 35.0% | |
| TATACTAGAAAGGTTGCATC+TGG | + | chr8.2:31560025-31560044 | None:intergenic | 35.0% | |
| TCATGTACTCATACCACTAT+TGG | - | chr8.2:31560594-31560613 | MS.gene066468:intron | 35.0% | |
| TCTTATTGTATGCTTGTCCT+TGG | + | chr8.2:31560653-31560672 | None:intergenic | 35.0% | |
| ! | AATGGATTCTTGAATGGTAC+AGG | + | chr8.2:31561736-31561755 | None:intergenic | 35.0% |
| ! | AGGATTTGTTCGAATAGCAA+TGG | - | chr8.2:31559364-31559383 | MS.gene066468:intron | 35.0% |
| ! | ATGTGCAGAGTATTAATTGG+AGG | - | chr8.2:31561115-31561134 | MS.gene066468:intron | 35.0% |
| ! | ATTTTGTATAAGGACTCGGA+TGG | - | chr8.2:31559926-31559945 | MS.gene066468:intron | 35.0% |
| ! | GGAATTTTCTCAACCTGAAT+TGG | + | chr8.2:31561778-31561797 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr8.2:31561116-31561135 | MS.gene066468:intron | 35.0% |
| ! | TTTTATGGAACATGGTTGTG+AGG | - | chr8.2:31559151-31559170 | MS.gene066468:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr8.2:31561215-31561234 | MS.gene066468:intron | 35.0% |
| !! | ATCAGTATGTTTTTGAGGGA+TGG | + | chr8.2:31561522-31561541 | None:intergenic | 35.0% |
| !! | GACACTCATTTTTAAACGGA+GGG | + | chr8.2:31560977-31560996 | None:intergenic | 35.0% |
| !! | TTAATTTCTTTGTTGGTGGC+TGG | - | chr8.2:31559086-31559105 | MS.gene066468:intron | 35.0% |
| AAAGCAGAAAACCGGAACAA+GGG | + | chr8.2:31559402-31559421 | None:intergenic | 40.0% | |
| AATCCATTGTATGTGGTGGT+GGG | - | chr8.2:31561748-31561767 | MS.gene066468:intron | 40.0% | |
| AGTTGCATTATAGTACCTGG+TGG | - | chr8.2:31559113-31559132 | MS.gene066468:intron | 40.0% | |
| ATGTCAACCCAAACTCTTGT+TGG | - | chr8.2:31560388-31560407 | MS.gene066468:intron | 40.0% | |
| CAAGAATCCATTGTATGTGG+TGG | - | chr8.2:31561744-31561763 | MS.gene066468:intron | 40.0% | |
| CCACTATTGGATAAAGAGGA+TGG | - | chr8.2:31560607-31560626 | MS.gene066468:intron | 40.0% | |
| CCATCCTCTTTATCCAATAG+TGG | + | chr8.2:31560610-31560629 | None:intergenic | 40.0% | |
| GGCATGCCTAAATGAATCAA+TGG | + | chr8.2:31560474-31560493 | None:intergenic | 40.0% | |
| GGGGTTATCATATTAGACCA+AGG | - | chr8.2:31560633-31560652 | MS.gene066468:intron | 40.0% | |
| GTTCGAATAGCAATGGAGAT+GGG | - | chr8.2:31559371-31559390 | MS.gene066468:intron | 40.0% | |
| TAGTTGGTTGTAGTGCCTTT+AGG | + | chr8.2:31561928-31561947 | None:intergenic | 40.0% | |
| TGAAACAGTTTCCGCTTTAG+AGG | + | chr8.2:31560496-31560515 | None:intergenic | 40.0% | |
| TGGTACAGGAGATCTATAAG+AGG | + | chr8.2:31561722-31561741 | None:intergenic | 40.0% | |
| TGTTCGAATAGCAATGGAGA+TGG | - | chr8.2:31559370-31559389 | MS.gene066468:intron | 40.0% | |
| ! | GAAACAGTTTCCGCTTTAGA+GGG | + | chr8.2:31560495-31560514 | None:intergenic | 40.0% |
| ! | GTCTCTTGCATTTTATGGAC+AGG | - | chr8.2:31558995-31559014 | MS.gene066468:intron | 40.0% |
| ! | TATGATTCGGGTTTGACAGA+AGG | + | chr8.2:31559571-31559590 | None:intergenic | 40.0% |
| !! | CGACACTCATTTTTAAACGG+AGG | + | chr8.2:31560978-31560997 | None:intergenic | 40.0% |
| !! | TATTGGGCTAGCCTCTTAAT+TGG | - | chr8.2:31561367-31561386 | MS.gene066468:intron | 40.0% |
| !! | TCTTTTTGACAATGGTGGTG+AGG | + | chr8.2:31560542-31560561 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr8.2:31561219-31561238 | MS.gene066468:intron | 40.0% |
| AAGCAGAAAACCGGAACAAG+GGG | + | chr8.2:31559401-31559420 | None:intergenic | 45.0% | |
| ACCTGACCAAAGCAGAAAAC+CGG | + | chr8.2:31559410-31559429 | None:intergenic | 45.0% | |
| ACGGTCATCCAACAAGAGTT+TGG | + | chr8.2:31560399-31560418 | None:intergenic | 45.0% | |
| AGTGTTTCTCTCATTCCACC+AGG | + | chr8.2:31559131-31559150 | None:intergenic | 45.0% | |
| ATTGGATAAAGAGGATGGCG+AGG | - | chr8.2:31560612-31560631 | MS.gene066468:intron | 45.0% | |
| CAAAGCAGAAAACCGGAACA+AGG | + | chr8.2:31559403-31559422 | None:intergenic | 45.0% | |
| CAAATGAACGGTTTCACACG+AGG | - | chr8.2:31560863-31560882 | MS.gene066468:CDS | 45.0% | |
| CGGTCATCCAACAAGAGTTT+GGG | + | chr8.2:31560398-31560417 | None:intergenic | 45.0% | |
| CTCGTGTGAAACCGTTCATT+TGG | + | chr8.2:31560865-31560884 | None:intergenic | 45.0% | |
| GAATCCATTGTATGTGGTGG+TGG | - | chr8.2:31561747-31561766 | MS.gene066468:intron | 45.0% | |
| GATATCTGTCTACGACCCAA+AGG | + | chr8.2:31560086-31560105 | None:intergenic | 45.0% | |
| TTGGATAAAGAGGATGGCGA+GGG | - | chr8.2:31560613-31560632 | MS.gene066468:intron | 45.0% | |
| ! | AGTGTGGGCTAAAAGTCTCA+CGG | + | chr8.2:31560418-31560437 | None:intergenic | 45.0% |
| ! | CTTGTTCCGGTTTTCTGCTT+TGG | - | chr8.2:31559401-31559420 | MS.gene066468:intron | 45.0% |
| ! | TATAAGTGGTGGAGAGCTTC+TGG | - | chr8.2:31560106-31560125 | MS.gene066468:intron | 45.0% |
| ! | TTTAGGCATGCCCTCTAAAG+CGG | - | chr8.2:31560482-31560501 | MS.gene066468:intron | 45.0% |
| !! | TTCTTAGAGAGGTGTCCACA+TGG | + | chr8.2:31559511-31559530 | None:intergenic | 45.0% |
| !! | TTTTGACAATGGTGGTGAGG+CGG | + | chr8.2:31560539-31560558 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr8.2:31561218-31561237 | MS.gene066468:intron | 45.0% |
| !! | ATAAAAATAATTACATATAT+TGG | - | chr8.2:31559232-31559251 | MS.gene066468:CDS | 5.0% |
| !!! | TTAATTTTTTTTCTTTTTTT+TGG | + | chr8.2:31559680-31559699 | None:intergenic | 5.0% |
| AGACACTGTCGAACACCATG+TGG | - | chr8.2:31559493-31559512 | MS.gene066468:intron | 50.0% | |
| AGCAGAAAACCGGAACAAGG+GGG | + | chr8.2:31559400-31559419 | None:intergenic | 50.0% | |
| CTACCCACCACCACATACAA+TGG | + | chr8.2:31561754-31561773 | None:intergenic | 50.0% | |
| GAACGACACAAGACTCAAGC+TGG | - | chr8.2:31562101-31562120 | MS.gene066468:intron | 50.0% | |
| GTGCATACCTGCTCTGATGT+TGG | + | chr8.2:31561805-31561824 | None:intergenic | 50.0% | |
| TCCAGAACCAACATCAGAGC+AGG | - | chr8.2:31561795-31561814 | MS.gene066468:intron | 50.0% | |
| TGGATAAAGAGGATGGCGAG+GGG | - | chr8.2:31560614-31560633 | MS.gene066468:intron | 50.0% | |
| ! | TCCGGTTTTCTGCTTTGGTC+AGG | - | chr8.2:31559406-31559425 | MS.gene066468:intron | 50.0% |
| !! | ACCTGCTCTGATGTTGGTTC+TGG | + | chr8.2:31561799-31561818 | None:intergenic | 50.0% |
| !! | GGTGGTGGGTAGACCAATTC+AGG | - | chr8.2:31561762-31561781 | MS.gene066468:intron | 55.0% |
| GATGGGTCACCCCCTTGTTC+CGG | - | chr8.2:31559388-31559407 | MS.gene066468:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 31558848 | 31562154 | 31558848 | ID=MS.gene066468 |
| chr8.2 | mRNA | 31558848 | 31562154 | 31558848 | ID=MS.gene066468.t1;Parent=MS.gene066468 |
| chr8.2 | exon | 31562116 | 31562154 | 31562116 | ID=MS.gene066468.t1.exon1;Parent=MS.gene066468.t1 |
| chr8.2 | CDS | 31562116 | 31562154 | 31562116 | ID=cds.MS.gene066468.t1;Parent=MS.gene066468.t1 |
| chr8.2 | exon | 31561830 | 31561985 | 31561830 | ID=MS.gene066468.t1.exon2;Parent=MS.gene066468.t1 |
| chr8.2 | CDS | 31561830 | 31561985 | 31561830 | ID=cds.MS.gene066468.t1;Parent=MS.gene066468.t1 |
| chr8.2 | exon | 31561575 | 31561661 | 31561575 | ID=MS.gene066468.t1.exon3;Parent=MS.gene066468.t1 |
| chr8.2 | CDS | 31561575 | 31561661 | 31561575 | ID=cds.MS.gene066468.t1;Parent=MS.gene066468.t1 |
| chr8.2 | exon | 31560808 | 31560905 | 31560808 | ID=MS.gene066468.t1.exon4;Parent=MS.gene066468.t1 |
| chr8.2 | CDS | 31560808 | 31560905 | 31560808 | ID=cds.MS.gene066468.t1;Parent=MS.gene066468.t1 |
| chr8.2 | exon | 31559186 | 31559273 | 31559186 | ID=MS.gene066468.t1.exon5;Parent=MS.gene066468.t1 |
| chr8.2 | CDS | 31559186 | 31559273 | 31559186 | ID=cds.MS.gene066468.t1;Parent=MS.gene066468.t1 |
| chr8.2 | exon | 31558848 | 31558949 | 31558848 | ID=MS.gene066468.t1.exon6;Parent=MS.gene066468.t1 |
| chr8.2 | CDS | 31558848 | 31558949 | 31558848 | ID=cds.MS.gene066468.t1;Parent=MS.gene066468.t1 |
| Gene Sequence |
| Protein sequence |
