AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055357


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055357.t1 MTR_8g005285 85.200 500 53 4 1 481 1 498 0.0 857
MS.gene055357.t1 MTR_8g005295 81.907 514 58 4 1 481 1 512 0.0 832
MS.gene055357.t1 MTR_8g005235 51.148 479 191 10 10 481 2 444 1.85e-155 449
MS.gene055357.t1 MTR_8g005325 51.374 473 186 11 17 481 38 474 1.40e-154 448
MS.gene055357.t1 MTR_8g005265 45.788 463 201 12 34 480 27 455 5.43e-128 380
MS.gene055357.t1 MTR_0209s0060 46.795 468 186 12 17 474 11 425 2.99e-127 377
MS.gene055357.t1 MTR_0209s0030 46.795 468 186 12 17 474 11 425 2.99e-127 377
MS.gene055357.t1 MTR_8g006525 47.323 467 194 11 13 474 7 426 3.79e-126 374
MS.gene055357.t1 MTR_8g005225 44.444 495 222 12 1 479 1 458 6.78e-125 372
MS.gene055357.t1 MTR_4g112660 35.637 463 166 14 34 476 6 356 1.84e-73 236
MS.gene055357.t1 MTR_3g079390 33.038 451 244 14 31 469 37 441 3.32e-61 207
MS.gene055357.t1 MTR_6g009590 30.958 449 234 9 24 463 15 396 8.42e-58 197
MS.gene055357.t1 MTR_6g010920 31.567 453 234 13 30 474 21 405 8.60e-58 196
MS.gene055357.t1 MTR_6g011050 31.350 437 227 11 34 463 24 394 8.92e-57 194
MS.gene055357.t1 MTR_6g009610 30.872 447 231 12 27 463 18 396 5.64e-55 189
MS.gene055357.t1 MTR_0024s0080 31.808 437 217 11 36 463 27 391 1.50e-54 188
MS.gene055357.t1 MTR_3g107590 32.957 443 224 12 32 462 24 405 1.02e-53 186
MS.gene055357.t1 MTR_6g011060 30.369 461 235 12 27 469 18 410 4.45e-53 184
MS.gene055357.t1 MTR_6g010890 31.092 476 237 15 17 469 10 417 1.40e-52 183
MS.gene055357.t1 MTR_6g010810 30.886 463 238 12 24 474 12 404 9.56e-52 181
MS.gene055357.t1 MTR_6g009170 30.989 455 234 13 24 462 15 405 1.67e-50 178
MS.gene055357.t1 MTR_2g041180 26.862 443 266 13 35 471 51 441 4.84e-41 154
MS.gene055357.t1 MTR_2g036320 26.754 456 264 14 27 471 61 457 7.66e-41 153
MS.gene055357.t1 MTR_2g035640 29.730 407 211 11 71 469 1 340 3.72e-39 145
MS.gene055357.t1 MTR_5g086340 27.740 447 249 13 35 466 33 420 3.07e-35 137
MS.gene055357.t1 MTR_6g010850 29.947 374 185 12 107 469 33 340 7.57e-33 129
MS.gene055357.t1 MTR_5g016570 28.160 451 254 12 30 454 97 503 3.93e-32 129
MS.gene055357.t1 MTR_7g011980 35.602 191 99 4 281 469 165 333 2.31e-27 112
MS.gene055357.t1 MTR_7g011980 31.361 169 77 5 15 183 8 137 7.68e-15 76.3
MS.gene055357.t1 MTR_7g059540 24.204 471 279 14 36 469 29 458 6.72e-26 110
MS.gene055357.t1 MTR_7g059540 23.493 481 280 13 36 469 28 467 5.67e-24 104
MS.gene055357.t1 MTR_5g086230 37.278 169 95 5 35 198 29 191 4.06e-23 97.4
MS.gene055357.t1 MTR_6g009580 31.604 212 115 4 259 462 30 219 2.52e-22 95.9
MS.gene055357.t1 MTR_7g060260 24.057 424 251 9 44 454 38 403 1.18e-21 97.4
MS.gene055357.t1 MTR_7g060310 22.521 484 274 12 44 469 39 479 4.02e-21 96.3
MS.gene055357.t1 MTR_7g060220 23.326 433 272 10 36 454 27 413 4.01e-19 90.1
MS.gene055357.t1 MTR_7g060320 22.876 459 269 12 36 454 28 441 4.10e-19 90.1
MS.gene055357.t1 MTR_7g059520 31.579 171 97 3 284 453 5 156 4.23e-18 82.4
MS.gene055357.t1 MTR_7g060115 22.926 458 272 14 48 471 41 451 7.12e-18 86.3
MS.gene055357.t1 MTR_7g060020 23.482 494 285 16 7 471 2 431 1.35e-17 85.5
MS.gene055357.t1 MTR_1g040690 25.476 420 248 14 34 433 27 401 2.54e-17 84.7
MS.gene055357.t1 MTR_7g059525 29.412 187 112 2 284 469 108 275 4.64e-17 82.0
MS.gene055357.t1 MTR_7g059480 28.358 201 121 3 273 469 584 765 7.14e-17 84.0
MS.gene055357.t1 MTR_6g009600 32.639 144 75 2 284 427 23 144 7.93e-17 78.2
MS.gene055357.t1 MTR_7g060840 23.297 455 264 13 44 480 38 425 3.70e-15 77.8
MS.gene055357.t1 MTR_5g086260 28.571 196 113 6 273 466 126 296 5.19e-15 76.3
MS.gene055357.t1 MTR_3g466740 25.128 390 217 14 35 396 31 373 8.85e-15 77.0
MS.gene055357.t1 MTR_7g060080 31.081 148 97 2 329 471 42 189 1.17e-14 72.8
MS.gene055357.t1 MTR_7g067940 30.000 200 126 4 35 233 30 216 1.69e-14 76.3
MS.gene055357.t1 MTR_7g059510 23.724 333 186 10 168 475 123 412 6.42e-14 73.9
MS.gene055357.t1 MTR_0182s0060 35.507 138 87 2 333 469 372 508 7.66e-14 73.9
MS.gene055357.t1 MTR_0067s0010 24.935 385 217 14 35 396 44 379 1.43e-13 73.2
MS.gene055357.t1 MTR_5g087580 24.868 189 118 2 282 469 41 206 1.46e-13 70.5
MS.gene055357.t1 MTR_7g446270 22.944 462 282 13 36 454 31 461 1.51e-13 73.2
MS.gene055357.t1 MTR_7g059810 23.788 433 259 10 44 454 38 421 1.96e-13 72.4
MS.gene055357.t1 MTR_7g060160 24.554 448 250 18 36 475 27 394 2.80e-13 72.0
MS.gene055357.t1 MTR_4g009620 32.919 161 98 4 34 189 42 197 7.08e-12 68.2
MS.gene055357.t1 MTR_4g009590 29.104 134 94 1 339 471 411 544 2.26e-11 66.6
MS.gene055357.t1 MTR_7g068070 29.091 165 114 3 31 194 26 188 3.41e-11 65.9
MS.gene055357.t1 MTR_7g067300 23.092 498 299 22 26 473 14 477 4.38e-11 65.5
MS.gene055357.t1 MTR_1g038270 30.319 188 110 8 17 192 7 185 9.03e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055357.t1 AT2G44930 30.882 476 227 12 34 474 84 492 7.89e-55 191
MS.gene055357.t1 AT2G28580 30.870 460 233 12 34 469 41 439 7.32e-54 188
MS.gene055357.t1 AT2G28580 30.753 465 237 12 34 474 109 512 1.33e-53 189
MS.gene055357.t1 AT2G28580 30.753 465 237 12 34 474 123 526 2.08e-53 188
MS.gene055357.t1 AT2G28580 31.360 456 229 12 34 474 109 495 3.73e-52 184
MS.gene055357.t1 AT2G28580 30.617 454 235 11 34 474 123 509 4.82e-52 184
MS.gene055357.t1 AT4G31980 29.263 434 238 11 34 462 293 662 2.48e-48 177
MS.gene055357.t1 AT5G11290 27.948 458 247 14 26 469 23 411 1.49e-44 162
MS.gene055357.t1 AT1G67150 27.912 455 245 11 33 469 5 394 6.44e-42 154
MS.gene055357.t1 AT1G67150 27.912 455 245 11 33 469 5 394 6.44e-42 154
MS.gene055357.t1 AT1G67150 27.669 459 245 11 33 469 5 398 2.93e-41 152
MS.gene055357.t1 AT2G36430 27.880 434 241 16 34 454 45 419 6.18e-39 147
MS.gene055357.t1 AT3G50150 28.571 448 264 11 36 471 92 495 1.48e-38 147
MS.gene055357.t1 AT3G50160 27.376 442 263 8 30 469 100 485 6.03e-38 145
MS.gene055357.t1 AT1G65985 28.942 463 232 13 36 454 16 425 1.84e-36 140
MS.gene055357.t1 AT1G65985 28.942 463 232 13 36 454 16 425 1.84e-36 140
MS.gene055357.t1 AT3G50170 27.233 459 259 11 36 469 115 523 2.57e-36 141
MS.gene055357.t1 AT2G28580 29.949 394 191 12 34 403 123 455 1.82e-35 137
MS.gene055357.t1 AT3G47250 26.754 456 280 13 25 469 52 464 9.45e-35 136
MS.gene055357.t1 AT3G47250 26.754 456 280 13 25 469 52 464 9.45e-35 136
MS.gene055357.t1 AT3G47250 26.754 456 280 13 25 469 52 464 9.45e-35 136
MS.gene055357.t1 AT3G50140 26.316 456 271 10 36 471 115 525 1.73e-33 133
MS.gene055357.t1 AT3G47210 28.846 416 205 12 25 419 84 429 7.78e-33 130
MS.gene055357.t1 AT3G50120 26.889 450 274 11 36 469 105 515 9.19e-33 131
MS.gene055357.t1 AT3G50180 26.981 467 246 12 30 469 174 572 2.00e-32 130
MS.gene055357.t1 AT3G47200 26.316 437 274 12 25 454 37 432 3.44e-29 120
MS.gene055357.t1 AT3G47200 26.316 437 274 12 25 454 37 432 3.44e-29 120
MS.gene055357.t1 AT5G22540 26.410 390 233 11 34 419 31 370 7.11e-29 119
MS.gene055357.t1 AT3G50130 27.107 439 254 13 36 454 141 533 1.56e-28 119
MS.gene055357.t1 AT3G50190 26.562 384 223 8 36 419 98 422 5.55e-26 110
MS.gene055357.t1 AT5G11290 25.061 411 227 13 71 469 1 342 6.55e-26 108
MS.gene055357.t1 AT5G22550 24.470 519 296 19 2 471 5 476 3.14e-25 108
MS.gene055357.t1 AT1G67150 24.719 445 229 13 33 469 5 351 6.66e-25 106
MS.gene055357.t1 AT3G60470 35.602 191 97 4 286 474 365 531 1.25e-23 104
MS.gene055357.t1 AT3G60470 39.106 179 85 5 36 193 34 209 4.88e-23 102
MS.gene055357.t1 AT3G44710 23.542 480 285 16 34 469 47 488 1.45e-23 103
MS.gene055357.t1 AT3G50150 26.496 351 211 11 36 364 92 417 8.45e-19 89.0
MS.gene055357.t1 AT3G50170 32.886 149 94 2 36 184 115 257 6.58e-18 86.3
MS.gene055357.t1 AT5G22560 26.599 297 160 11 3 278 10 269 1.46e-17 85.9
MS.gene055357.t1 AT3G50140 30.519 154 101 2 36 189 115 262 4.56e-14 74.3
MS.gene055357.t1 AT3G02645 31.967 122 82 1 335 455 376 497 1.31e-12 70.5
MS.gene055357.t1 AT3G50190 27.647 170 114 3 36 205 98 258 1.68e-12 68.9
MS.gene055357.t1 AT3G50190 27.647 170 114 3 36 205 98 258 1.68e-12 69.3
MS.gene055357.t1 AT3G50190 27.647 170 114 3 36 205 98 258 1.68e-12 69.3

Find 66 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATATCTCTTTGTCGATTT+TGG 0.072793 8.2:-83490331 None:intergenic
ATAACCATTATCAGAATATT+TGG 0.141712 8.2:+83491270 MS.gene055357:CDS
CTTGATACTGACATTGTTCT+AGG 0.157660 8.2:-83491049 None:intergenic
ATTAACTTTGTTACTGTTCT+TGG 0.162375 8.2:-83490825 None:intergenic
AAGAACAGTAACAAAGTTAA+TGG 0.202748 8.2:+83490827 MS.gene055357:CDS
TTATACCTTCCACCTGATTT+AGG 0.212491 8.2:+83490777 MS.gene055357:CDS
GAAACATAATTGCATATATA+AGG 0.271861 8.2:-83491077 None:intergenic
AGATCCATCAATACAGAAAA+AGG 0.321449 8.2:-83490516 None:intergenic
GTAACAAAGTTAATGGATTC+TGG 0.333596 8.2:+83490834 MS.gene055357:CDS
CATGATCATTGATTGTTGAT+TGG 0.336296 8.2:-83490244 None:intergenic
ATCAAATCAGTGAAATGTTT+AGG 0.346459 8.2:-83490747 None:intergenic
GGTTCCAAATATTCTGATAA+TGG 0.351805 8.2:-83491274 None:intergenic
ACACAACAGAATGCGTTCTA+AGG 0.362848 8.2:+83491015 MS.gene055357:CDS
GAGAAACAGTTCATTGAAAT+CGG 0.364761 8.2:+83490401 MS.gene055357:CDS
TCTCTATTAGAAAAGAATCT+TGG 0.372651 8.2:-83491408 None:intergenic
GACATTGTTCTAGGGCAATC+AGG 0.382119 8.2:-83491040 None:intergenic
CGCCGTTAGGGACGACGGTT+TGG 0.383020 8.2:-83490542 None:intergenic
GAGCTAGTTCTACTTTGGTT+GGG 0.384217 8.2:+83491342 MS.gene055357:CDS
AACATTTCACTGATTTGATA+AGG 0.390830 8.2:+83490751 MS.gene055357:CDS
ACTCCTCAATTAATCTCAAT+TGG 0.392658 8.2:+83490132 MS.gene055357:CDS
ATAGACGCTCATAGAAGAAA+TGG 0.394603 8.2:-83490215 None:intergenic
GAAGTGGCAGTGCTTGTTAA+TGG 0.401978 8.2:+83491188 MS.gene055357:CDS
AGAGCTAGTTCTACTTTGGT+TGG 0.408855 8.2:+83491341 MS.gene055357:CDS
CCATCACTCTTTCCTAAATC+AGG 0.411801 8.2:-83490789 None:intergenic
GTTTAGGAACTTGAATCCTA+TGG 0.427046 8.2:-83490731 None:intergenic
TTATTAGACGTGCTTTGAAA+TGG 0.429885 8.2:-83490971 None:intergenic
TCTAATAATTCCACAATTGA+AGG 0.439069 8.2:+83490986 MS.gene055357:CDS
AATCAACATCAACTTGTGTA+TGG 0.449318 8.2:-83491118 None:intergenic
ACAAGTTGATGTTGATTTGT+TGG 0.455972 8.2:+83491124 MS.gene055357:CDS
GGAAGTGATTGTGCATGAAA+TGG 0.461128 8.2:+83491154 MS.gene055357:CDS
TAAGCTTATTAATAGTATCA+TGG 0.461800 8.2:-83491247 None:intergenic
GGACCAATTGAGATTAATTG+AGG 0.464532 8.2:-83490135 None:intergenic
TTGGAGAGCTAGTTCTACTT+TGG 0.466290 8.2:+83491337 MS.gene055357:CDS
CATCACCAAGCTTAGTTTCA+CGG 0.472507 8.2:-83490644 None:intergenic
ATCACCAAGCTTAGTTTCAC+GGG 0.494771 8.2:-83490643 None:intergenic
AGCAGATTGTAGCATCTACA+AGG 0.504878 8.2:+83490071 MS.gene055357:CDS
ATTACATTCTAACACAAGCT+TGG 0.511928 8.2:+83490445 MS.gene055357:CDS
TGTTGATTTGTTGGTGGAGA+AGG 0.512953 8.2:+83491133 MS.gene055357:CDS
GAAGTGATTGTGCATGAAAT+GGG 0.523677 8.2:+83491155 MS.gene055357:CDS
GGTGATGTTGCCGTTGGTAG+CGG 0.530910 8.2:+83490660 MS.gene055357:CDS
TTTGTCGCCGTTAGGGACGA+CGG 0.536027 8.2:-83490547 None:intergenic
GGCTCAGCAAAAGCATCGCA+AGG 0.540954 8.2:+83490466 MS.gene055357:CDS
TTGATACTGACATTGTTCTA+GGG 0.541956 8.2:-83491048 None:intergenic
TGGTTCAAACATGAAAATGA+AGG 0.548134 8.2:-83490951 None:intergenic
TCAATTGGTCCAATTCACCT+TGG 0.558480 8.2:+83490147 MS.gene055357:CDS
ATGAGCTTCAGACTCTATCT+CGG 0.572339 8.2:+83490264 MS.gene055357:CDS
AGTTGATGTTGATTTGTTGG+TGG 0.572996 8.2:+83491127 MS.gene055357:CDS
CACCAACCACAATGTAGTCA+TGG 0.576927 8.2:-83491300 None:intergenic
TACCAAACCGTCGTCCCTAA+CGG 0.578089 8.2:+83490540 MS.gene055357:CDS
AACTGAATTACCGCTACCAA+CGG 0.579233 8.2:-83490670 None:intergenic
TGGTCTTTGTAAACATGTTG+TGG 0.582048 8.2:+83491208 MS.gene055357:CDS
TCATCCCGTGAAACTAAGCT+TGG 0.589128 8.2:+83490639 MS.gene055357:CDS
AATCTATGAGCAGTAACCAT+AGG 0.602676 8.2:+83490715 MS.gene055357:CDS
ACCACAATGTAGTCATGGTA+CGG 0.603090 8.2:-83491295 None:intergenic
CAAGATCAAGAAAACTTGCA+TGG 0.608575 8.2:-83490578 None:intergenic
TCTTTCCTAAATCAGGTGGA+AGG 0.615782 8.2:-83490782 None:intergenic
AATAAGAAAATGTTATGCAG+AGG 0.616750 8.2:+83490302 MS.gene055357:CDS
AAGCTTGGTGATGTTGCCGT+TGG 0.620314 8.2:+83490654 MS.gene055357:CDS
GTGTGATCAACCTTCAATTG+TGG 0.623055 8.2:-83490996 None:intergenic
TCACTCTTTCCTAAATCAGG+TGG 0.629605 8.2:-83490786 None:intergenic
CCTGATTTAGGAAAGAGTGA+TGG 0.634152 8.2:+83490789 MS.gene055357:CDS
TACCATGACTACATTGTGGT+TGG 0.634943 8.2:+83491298 MS.gene055357:CDS
TGCTTTATCTGAATATGATG+TGG 0.636582 8.2:+83490005 MS.gene055357:CDS
AATGGGAAGTGATAAAGAAG+TGG 0.638138 8.2:+83491172 MS.gene055357:CDS
GCTCAGCAAAAGCATCGCAA+GGG 0.656302 8.2:+83490467 MS.gene055357:CDS
ACCGTACCATGACTACATTG+TGG 0.800293 8.2:+83491294 MS.gene055357:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACCATTATCAGAATATT+TGG + chr8.2:83491270-83491289 MS.gene055357:CDS 20.0%
!! GAAACATAATTGCATATATA+AGG - chr8.2:83491080-83491099 None:intergenic 20.0%
!! TAAGCTTATTAATAGTATCA+TGG - chr8.2:83491250-83491269 None:intergenic 20.0%
!!! TTTATCAGAATGTTTTTTCT+TGG - chr8.2:83490697-83490716 None:intergenic 20.0%
! AAGAACAGTAACAAAGTTAA+TGG + chr8.2:83490827-83490846 MS.gene055357:CDS 25.0%
! AATAAGAAAATGTTATGCAG+AGG + chr8.2:83490302-83490321 MS.gene055357:CDS 25.0%
! ATCAAATCAGTGAAATGTTT+AGG - chr8.2:83490750-83490769 None:intergenic 25.0%
! ATTAACTTTGTTACTGTTCT+TGG - chr8.2:83490828-83490847 None:intergenic 25.0%
! TCTAATAATTCCACAATTGA+AGG + chr8.2:83490986-83491005 MS.gene055357:CDS 25.0%
!!! AACATTTCACTGATTTGATA+AGG + chr8.2:83490751-83490770 MS.gene055357:CDS 25.0%
!!! AATATCTCTTTGTCGATTTT+GGG - chr8.2:83490333-83490352 None:intergenic 25.0%
AATCAACATCAACTTGTGTA+TGG - chr8.2:83491121-83491140 None:intergenic 30.0%
ACTCCTCAATTAATCTCAAT+TGG + chr8.2:83490132-83490151 MS.gene055357:CDS 30.0%
AGATCCATCAATACAGAAAA+AGG - chr8.2:83490519-83490538 None:intergenic 30.0%
ATTACATTCTAACACAAGCT+TGG + chr8.2:83490445-83490464 MS.gene055357:CDS 30.0%
CAATGCAACAACACAAAAAA+AGG + chr8.2:83490187-83490206 MS.gene055357:CDS 30.0%
GAGAAACAGTTCATTGAAAT+CGG + chr8.2:83490401-83490420 MS.gene055357:CDS 30.0%
GGTTCCAAATATTCTGATAA+TGG - chr8.2:83491277-83491296 None:intergenic 30.0%
TGCTTTATCTGAATATGATG+TGG + chr8.2:83490005-83490024 MS.gene055357:CDS 30.0%
TGGTTCAAACATGAAAATGA+AGG - chr8.2:83490954-83490973 None:intergenic 30.0%
TTGATACTGACATTGTTCTA+GGG - chr8.2:83491051-83491070 None:intergenic 30.0%
! CATGATCATTGATTGTTGAT+TGG - chr8.2:83490247-83490266 None:intergenic 30.0%
! GATACCTTTTTCTGTATTGA+TGG + chr8.2:83490512-83490531 MS.gene055357:CDS 30.0%
!! AAGCTTCTTGTTTCACTTTT+CGG - chr8.2:83490110-83490129 None:intergenic 30.0%
!! ACAAGTTGATGTTGATTTGT+TGG + chr8.2:83491124-83491143 MS.gene055357:CDS 30.0%
!! CTAAGTTATTTTCTCTGCTT+AGG + chr8.2:83490921-83490940 MS.gene055357:CDS 30.0%
!! GTAACAAAGTTAATGGATTC+TGG + chr8.2:83490834-83490853 MS.gene055357:CDS 30.0%
!! TTATTAGACGTGCTTTGAAA+TGG - chr8.2:83490974-83490993 None:intergenic 30.0%
!!! CTTTTTTTGTGTTGTTGCAT+TGG - chr8.2:83490189-83490208 None:intergenic 30.0%
!!! GAATATCTCTTTGTCGATTT+TGG - chr8.2:83490334-83490353 None:intergenic 30.0%
!!! GTGAGTTTTGAGAAAATTGT+GGG + chr8.2:83490858-83490877 MS.gene055357:CDS 30.0%
!!! TGAGTTTTGAGAAAATTGTG+GGG + chr8.2:83490859-83490878 MS.gene055357:CDS 30.0%
!!! TGTGAGTTTTGAGAAAATTG+TGG + chr8.2:83490857-83490876 MS.gene055357:CDS 30.0%
AATCTATGAGCAGTAACCAT+AGG + chr8.2:83490715-83490734 MS.gene055357:CDS 35.0%
AATGGGAAGTGATAAAGAAG+TGG + chr8.2:83491172-83491191 MS.gene055357:CDS 35.0%
ATAGACGCTCATAGAAGAAA+TGG - chr8.2:83490218-83490237 None:intergenic 35.0%
CAAGATCAAGAAAACTTGCA+TGG - chr8.2:83490581-83490600 None:intergenic 35.0%
CTTGATACTGACATTGTTCT+AGG - chr8.2:83491052-83491071 None:intergenic 35.0%
GAAGTGATTGTGCATGAAAT+GGG + chr8.2:83491155-83491174 MS.gene055357:CDS 35.0%
GGACCAATTGAGATTAATTG+AGG - chr8.2:83490138-83490157 None:intergenic 35.0%
GTTTAGGAACTTGAATCCTA+TGG - chr8.2:83490734-83490753 None:intergenic 35.0%
TGGTCTTTGTAAACATGTTG+TGG + chr8.2:83491208-83491227 MS.gene055357:CDS 35.0%
TTATACCTTCCACCTGATTT+AGG + chr8.2:83490777-83490796 MS.gene055357:CDS 35.0%
! GTTGAAGTTCTTCTTTTCCA+AGG - chr8.2:83490167-83490186 None:intergenic 35.0%
! TCTTCTTTTCCAAGGTGAAT+TGG - chr8.2:83490159-83490178 None:intergenic 35.0%
!! AGTTGATGTTGATTTGTTGG+TGG + chr8.2:83491127-83491146 MS.gene055357:CDS 35.0%
!! TGGTGTATTTTAGAGATGCT+TGG + chr8.2:83491318-83491337 MS.gene055357:CDS 35.0%
!!! GTTTGATGCTGTTTTCATCA+TGG + chr8.2:83490368-83490387 MS.gene055357:CDS 35.0%
AACTGAATTACCGCTACCAA+CGG - chr8.2:83490673-83490692 None:intergenic 40.0%
ACACAACAGAATGCGTTCTA+AGG + chr8.2:83491015-83491034 MS.gene055357:CDS 40.0%
ACCACAATGTAGTCATGGTA+CGG - chr8.2:83491298-83491317 None:intergenic 40.0%
AGCAGATTGTAGCATCTACA+AGG + chr8.2:83490071-83490090 MS.gene055357:CDS 40.0%
ATCACCAAGCTTAGTTTCAC+GGG - chr8.2:83490646-83490665 None:intergenic 40.0%
ATGAGCTTCAGACTCTATCT+CGG + chr8.2:83490264-83490283 MS.gene055357:CDS 40.0%
CATCACCAAGCTTAGTTTCA+CGG - chr8.2:83490647-83490666 None:intergenic 40.0%
CCATCACTCTTTCCTAAATC+AGG - chr8.2:83490792-83490811 None:intergenic 40.0%
CCTGATTTAGGAAAGAGTGA+TGG + chr8.2:83490789-83490808 MS.gene055357:CDS 40.0%
GGAAGTGATTGTGCATGAAA+TGG + chr8.2:83491154-83491173 MS.gene055357:CDS 40.0%
GTGTGATCAACCTTCAATTG+TGG - chr8.2:83490999-83491018 None:intergenic 40.0%
TACCATGACTACATTGTGGT+TGG + chr8.2:83491298-83491317 MS.gene055357:CDS 40.0%
TCAATTGGTCCAATTCACCT+TGG + chr8.2:83490147-83490166 MS.gene055357:CDS 40.0%
TCACTCTTTCCTAAATCAGG+TGG - chr8.2:83490789-83490808 None:intergenic 40.0%
TCTTTCCTAAATCAGGTGGA+AGG - chr8.2:83490785-83490804 None:intergenic 40.0%
!! AGAGCTAGTTCTACTTTGGT+TGG + chr8.2:83491341-83491360 MS.gene055357:CDS 40.0%
!! GAGCTAGTTCTACTTTGGTT+GGG + chr8.2:83491342-83491361 MS.gene055357:CDS 40.0%
!! TGTTGATTTGTTGGTGGAGA+AGG + chr8.2:83491133-83491152 MS.gene055357:CDS 40.0%
!! TTCACTTTTCGGAGATTGTG+AGG - chr8.2:83490099-83490118 None:intergenic 40.0%
!! TTGGAGAGCTAGTTCTACTT+TGG + chr8.2:83491337-83491356 MS.gene055357:CDS 40.0%
!!! CTTCTTTTTTGTCGCCGTTA+GGG - chr8.2:83490557-83490576 None:intergenic 40.0%
!!! TCTTCTTTTTTGTCGCCGTT+AGG - chr8.2:83490558-83490577 None:intergenic 40.0%
ACCGTACCATGACTACATTG+TGG + chr8.2:83491294-83491313 MS.gene055357:CDS 45.0%
CACCAACCACAATGTAGTCA+TGG - chr8.2:83491303-83491322 None:intergenic 45.0%
TCATCCCGTGAAACTAAGCT+TGG + chr8.2:83490639-83490658 MS.gene055357:CDS 45.0%
! CGCAAGGGACTTGATTTTGT+TGG + chr8.2:83490482-83490501 MS.gene055357:CDS 45.0%
! GAAGTGGCAGTGCTTGTTAA+TGG + chr8.2:83491188-83491207 MS.gene055357:CDS 45.0%
!! GACATTGTTCTAGGGCAATC+AGG - chr8.2:83491043-83491062 None:intergenic 45.0%
TACCAAACCGTCGTCCCTAA+CGG + chr8.2:83490540-83490559 MS.gene055357:CDS 50.0%
!! AAGCTTGGTGATGTTGCCGT+TGG + chr8.2:83490654-83490673 MS.gene055357:CDS 50.0%
!! GCTCAGCAAAAGCATCGCAA+GGG + chr8.2:83490467-83490486 MS.gene055357:CDS 50.0%
TTTGTCGCCGTTAGGGACGA+CGG - chr8.2:83490550-83490569 None:intergenic 55.0%
! GGTGATGTTGCCGTTGGTAG+CGG + chr8.2:83490660-83490679 MS.gene055357:CDS 55.0%
!! GGCTCAGCAAAAGCATCGCA+AGG + chr8.2:83490466-83490485 MS.gene055357:CDS 55.0%
CGCCGTTAGGGACGACGGTT+TGG - chr8.2:83490545-83490564 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 83489979 83491424 83489979 ID=MS.gene055357
chr8.2 mRNA 83489979 83491424 83489979 ID=MS.gene055357.t1;Parent=MS.gene055357
chr8.2 exon 83489979 83491424 83489979 ID=MS.gene055357.t1.exon1;Parent=MS.gene055357.t1
chr8.2 CDS 83489979 83491424 83489979 ID=cds.MS.gene055357.t1;Parent=MS.gene055357.t1
Gene Sequence

>MS.gene055357

ATGGCACATGCTAATGCTTCTGCTGCTGCTTTATCTGAATATGATGTGGTGAAACACATCATTGACACTGATGTTCTAGAAGAGTTAAGTTTAGCAGATTGTAGCATCTACAAGGTTCCTCACAATCTCCGAAAAGTGAAACAAGAAGCTTACACTCCTCAATTAATCTCAATTGGTCCAATTCACCTTGGAAAAGAAGAACTTCAACCAATGCAACAACACAAAAAAAGGTATTTCCATTTCTTCTATGAGCGTCTATCTAAATCCAATCAACAATCAATGATCATGAGCTTCAGACTCTATCTCGGAAACAAAGAACAAGAAATAAGAAAATGTTATGCAGAGGATTTTCCCAAAATCGACAAAGAGATATTCGTCGAAACAATTTTGTTTGATGCTGTTTTCATCATGGAACTTTTGTTGAGAAACAGTTCATTGAAATCGGATACATCAAAAGATGAACATGATTACATTCTAACACAAGCTTGGCTCAGCAAAAGCATCGCAAGGGACTTGATTTTGTTGGAAAATCAGATACCTTTTTCTGTATTGATGGATCTTTACCAAACCGTCGTCCCTAACGGCGACAAAAAAGAAGACCATGCAAGTTTTCTTGATCTTGCACTTGAGTACTTTGCATTCTATGACACTCAGAAATCGTCATCCCGTGAAACTAAGCTTGGTGATGTTGCCGTTGGTAGCGGTAATTCAGTTTCCAAGAAAAAACATTCTGATAAATCTATGAGCAGTAACCATAGGATTCAAGTTCCTAAACATTTCACTGATTTGATAAGGTTTTTATACCTTCCACCTGATTTAGGAAAGAGTGATGGTTCTCATATTTTTCCAAGAACAGTAACAAAGTTAATGGATTCTGGTGTGAGTTTTGAGAAAATTGTGGGGAGAAGATTACTAGACATAAACTTTGAGAAGAAAAAGTTTCTAAGTTATTTTCTCTGCTTAGGTTGTTTACCTTCATTTTCATGTTTGAACCATTTCAAAGCACGTCTAATAATTCCACAATTGAAGGTTGATCACACAACAGAATGCGTTCTAAGGAACCTGATTGCCCTAGAACAATGTCAGTATCAAGAGAAACCTTATATATGCAATTATGTTTCACTTGTTGATTCTCTTATCCATACACAAGTTGATGTTGATTTGTTGGTGGAGAAGGAAGTGATTGTGCATGAAATGGGAAGTGATAAAGAAGTGGCAGTGCTTGTTAATGGTCTTTGTAAACATGTTGTGGTGAATTCAACTTGTTACCATGATACTATTAATAAGCTTAATAACCATTATCAGAATATTTGGAACCGTACCATGACTACATTGTGGTTGGTGTATTTTAGAGATGCTTGGAGAGCTAGTTCTACTTTGGTTGGGATTGCTTTTCTTGTTTACACAGCATTCAACTTTGTACGTCTTGCCAAGATTCTTTTCTAA

Protein sequence

>MS.gene055357.t1

MAHANASAAALSEYDVVKHIIDTDVLEELSLADCSIYKVPHNLRKVKQEAYTPQLISIGPIHLGKEELQPMQQHKKRYFHFFYERLSKSNQQSMIMSFRLYLGNKEQEIRKCYAEDFPKIDKEIFVETILFDAVFIMELLLRNSSLKSDTSKDEHDYILTQAWLSKSIARDLILLENQIPFSVLMDLYQTVVPNGDKKEDHASFLDLALEYFAFYDTQKSSSRETKLGDVAVGSGNSVSKKKHSDKSMSSNHRIQVPKHFTDLIRFLYLPPDLGKSDGSHIFPRTVTKLMDSGVSFEKIVGRRLLDINFEKKKFLSYFLCLGCLPSFSCLNHFKARLIIPQLKVDHTTECVLRNLIALEQCQYQEKPYICNYVSLVDSLIHTQVDVDLLVEKEVIVHEMGSDKEVAVLVNGLCKHVVVNSTCYHDTINKLNNHYQNIWNRTMTTLWLVYFRDAWRASSTLVGIAFLVYTAFNFVRLAKILF