Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066547.t1 | XP_003626362.1 | 91 | 156 | 3 | 1 | 1 | 156 | 1 | 145 | 2.70E-74 | 288.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066547.t1 | Q02610 | 85.3 | 156 | 12 | 1 | 1 | 156 | 1 | 145 | 6.3e-72 | 271.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066547.t1 | B7FGV9 | 91.0 | 156 | 3 | 1 | 1 | 156 | 1 | 145 | 1.9e-74 | 288.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066547 | MS.gene62862 | PPI |
| MS.gene71901 | MS.gene066547 | PPI |
| MS.gene011492 | MS.gene066547 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066547.t1 | MTR_7g114240 | 91.026 | 156 | 3 | 1 | 1 | 156 | 1 | 145 | 3.45e-97 | 278 |
| MS.gene066547.t1 | MTR_7g114240 | 86.842 | 114 | 4 | 1 | 1 | 114 | 1 | 103 | 2.90e-65 | 196 |
| MS.gene066547.t1 | MTR_6g029200 | 64.516 | 155 | 45 | 1 | 2 | 156 | 8 | 152 | 7.26e-65 | 196 |
| MS.gene066547.t1 | MTR_4g057240 | 64.189 | 148 | 41 | 2 | 9 | 156 | 63 | 198 | 2.40e-61 | 189 |
| MS.gene066547.t1 | MTR_6g029200 | 75.424 | 118 | 29 | 0 | 39 | 156 | 25 | 142 | 3.68e-60 | 184 |
| MS.gene066547.t1 | MTR_4g101820 | 38.298 | 94 | 50 | 2 | 41 | 134 | 182 | 267 | 2.07e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066547.t1 | AT1G08830 | 76.923 | 156 | 25 | 1 | 1 | 156 | 1 | 145 | 9.63e-81 | 236 |
| MS.gene066547.t1 | AT1G08830 | 76.923 | 156 | 25 | 1 | 1 | 156 | 1 | 145 | 9.63e-81 | 236 |
| MS.gene066547.t1 | AT2G28190 | 63.636 | 154 | 45 | 1 | 3 | 156 | 66 | 208 | 1.93e-64 | 197 |
| MS.gene066547.t1 | AT5G18100 | 58.710 | 155 | 53 | 1 | 2 | 156 | 8 | 151 | 1.69e-59 | 183 |
| MS.gene066547.t1 | AT5G18100 | 56.522 | 138 | 49 | 1 | 2 | 139 | 8 | 134 | 2.77e-49 | 156 |
Find 59 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCGACATGCTGGTGATTT+AGG | 0.204339 | 7.4:+3053100 | MS.gene066547:CDS |
| GGCTTCCATATCCATGCCTT+GGG | 0.292332 | 7.4:+3052720 | MS.gene066547:CDS |
| ACTGTGACCGGAAATCTTTC+TGG | 0.298064 | 7.4:+3052678 | MS.gene066547:CDS |
| GCCCTTCCTATGATTGAGTT+TGG | 0.330134 | 7.4:-3053627 | None:intergenic |
| CTTAAGACCAGAAAGATTTC+CGG | 0.340182 | 7.4:-3052685 | None:intergenic |
| GCACCGTGCTCCTTACCATT+AGG | 0.399615 | 7.4:-3053064 | None:intergenic |
| TGGTAAGTTTCAACAGCCTT+TGG | 0.402756 | 7.4:+3052568 | MS.gene066547:CDS |
| GTGAAGGCTGTGGCAGTTCT+TGG | 0.413587 | 7.4:+3052497 | MS.gene066547:CDS |
| GGTCTTAAGCCTGGCCTCCA+TGG | 0.414866 | 7.4:+3052699 | MS.gene066547:CDS |
| TGGCTTCCATATCCATGCCT+TGG | 0.423080 | 7.4:+3052719 | MS.gene066547:CDS |
| ACTGGACCAAACTCAATCAT+AGG | 0.429060 | 7.4:+3053621 | MS.gene066547:CDS |
| GCATGTCGAATCTCATCCTC+AGG | 0.433796 | 7.4:-3053088 | None:intergenic |
| CTTCACCATTACTGACAATC+AGG | 0.444656 | 7.4:+3053287 | MS.gene066547:CDS |
| ACAAATGGTTGCATGTCAAC+TGG | 0.450246 | 7.4:+3052750 | MS.gene066547:CDS |
| GGACCACATTTCAATCCTAA+TGG | 0.461674 | 7.4:+3053049 | MS.gene066547:intron |
| GTACCTTTCCCAAGATCATC+AGG | 0.463574 | 7.4:-3053669 | None:intergenic |
| CATGCCGATCCTGATGATCT+TGG | 0.469419 | 7.4:+3053660 | MS.gene066547:CDS |
| AGCTTCTCTCAGGAGGGAAA+TGG | 0.473090 | 7.4:+3052548 | MS.gene066547:CDS |
| ATGCCGATCCTGATGATCTT+GGG | 0.478164 | 7.4:+3053661 | MS.gene066547:CDS |
| AATGTCACTGTCGGCGATGA+TGG | 0.482153 | 7.4:+3053124 | MS.gene066547:CDS |
| TGGTACTATTAGCTTCTCTC+AGG | 0.486454 | 7.4:+3052538 | MS.gene066547:CDS |
| AGTTGACATGCAACCATTTG+TGG | 0.493212 | 7.4:-3052748 | None:intergenic |
| AATCTTTCTGGTCTTAAGCC+TGG | 0.494092 | 7.4:+3052690 | MS.gene066547:CDS |
| AGATTTCCGGTCACAGTGGT+TGG | 0.506019 | 7.4:-3052672 | None:intergenic |
| CATGAGCTTAGCAAGACTAC+TGG | 0.517405 | 7.4:+3053988 | MS.gene066547:CDS |
| ATATGGAAGCCATGGAGGCC+AGG | 0.527324 | 7.4:-3052708 | None:intergenic |
| AGGCATGGATATGGAAGCCA+TGG | 0.529289 | 7.4:-3052716 | None:intergenic |
| AGCAAGACTACTGGAAATGC+TGG | 0.533538 | 7.4:+3053997 | MS.gene066547:CDS |
| GCAGGTCCAACCACTGTGAC+CGG | 0.534164 | 7.4:+3052666 | MS.gene066547:intron |
| GTGAGAAGTTCTGACAATCA+TGG | 0.540997 | 7.4:+3054165 | MS.gene066547:CDS |
| TGTTCACAGATCCCTCTCAC+TGG | 0.549506 | 7.4:+3053603 | MS.gene066547:intron |
| GGTAACAGTAATGATGTCTC+TGG | 0.553348 | 7.4:+3052518 | MS.gene066547:CDS |
| ACATTTCAATCCTAATGGTA+AGG | 0.554760 | 7.4:+3053054 | MS.gene066547:CDS |
| TACTATTAGCTTCTCTCAGG+AGG | 0.557121 | 7.4:+3052541 | MS.gene066547:CDS |
| GACCAAACTCAATCATAGGA+AGG | 0.559020 | 7.4:+3053625 | MS.gene066547:CDS |
| GTCAGTAATGGTGAAGCTTG+CGG | 0.567650 | 7.4:-3053280 | None:intergenic |
| ATTGAGTTTGGTCCAGTGAG+AGG | 0.575707 | 7.4:-3053615 | None:intergenic |
| TTGAGTTTGGTCCAGTGAGA+GGG | 0.579337 | 7.4:-3053614 | None:intergenic |
| GATTTAGGAAATGTCACTGT+CGG | 0.580192 | 7.4:+3053115 | MS.gene066547:CDS |
| TTGAACAATGGTGAAGGCTG+TGG | 0.590785 | 7.4:+3052487 | None:intergenic |
| ACATACCTGATTGTCAGTAA+TGG | 0.594183 | 7.4:-3053292 | None:intergenic |
| GAGGATGAGATTCGACATGC+TGG | 0.598972 | 7.4:+3053091 | MS.gene066547:CDS |
| ATCACATTGAACAATGGTGA+AGG | 0.610273 | 7.4:+3052481 | None:intergenic |
| GATCCTGATGATCTTGGGAA+AGG | 0.612525 | 7.4:+3053666 | MS.gene066547:CDS |
| GCTTCCATATCCATGCCTTG+GGG | 0.616548 | 7.4:+3052721 | MS.gene066547:CDS |
| TTACTCTTCGCGGAGACCAA+AGG | 0.617471 | 7.4:-3052584 | None:intergenic |
| AATCCTAATGGTAAGGAGCA+CGG | 0.625283 | 7.4:+3053061 | MS.gene066547:CDS |
| ACCAAACTCAATCATAGGAA+GGG | 0.632037 | 7.4:+3053626 | MS.gene066547:CDS |
| CATGGATATGGAAGCCATGG+AGG | 0.632624 | 7.4:-3052713 | None:intergenic |
| ACTATTAGCTTCTCTCAGGA+GGG | 0.637590 | 7.4:+3052542 | MS.gene066547:CDS |
| CATGTCGAATCTCATCCTCA+GGG | 0.638518 | 7.4:-3053087 | None:intergenic |
| TTTCCCAAGATCATCAGGAT+CGG | 0.641905 | 7.4:-3053664 | None:intergenic |
| TTACCATTAGGATTGAAATG+TGG | 0.656736 | 7.4:-3053052 | None:intergenic |
| CTTCCATATCCATGCCTTGG+GGG | 0.658207 | 7.4:+3052722 | MS.gene066547:CDS |
| TAAGGAGCACGGTGCCCCTG+AGG | 0.679963 | 7.4:+3053072 | MS.gene066547:CDS |
| AAGACTACTGGAAATGCTGG+TGG | 0.685336 | 7.4:+3054000 | MS.gene066547:CDS |
| AGAAAGATTTCCGGTCACAG+TGG | 0.704388 | 7.4:-3052676 | None:intergenic |
| ATGTCGAATCTCATCCTCAG+GGG | 0.738664 | 7.4:-3053086 | None:intergenic |
| GCTGGTGGCAGAGTAGCTTG+TGG | 0.784017 | 7.4:+3054015 | MS.gene066547:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAAAATAAAATCAAG+TGG | - | chr7.4:3053186-3053205 | None:intergenic | 15.0% |
| !! | ATTTCTAATGAATTATTCTA+GGG | + | chr7.4:3053341-3053360 | MS.gene066547:intron | 15.0% |
| !! | TAACCTATAAAACATATAAA+AGG | - | chr7.4:3052908-3052927 | None:intergenic | 15.0% |
| !!! | GTTTGATTTTAACTTTAAAA+TGG | + | chr7.4:3053231-3053250 | MS.gene066547:intron | 15.0% |
| !!! | TATCCTTTTATATGTTTTAT+AGG | + | chr7.4:3052902-3052921 | MS.gene066547:intron | 15.0% |
| !! | ATTATTCTAAATTGACAACA+AGG | + | chr7.4:3053547-3053566 | MS.gene066547:intron | 20.0% |
| !! | CATTTCTAATGAATTATTCT+AGG | + | chr7.4:3053340-3053359 | MS.gene066547:intron | 20.0% |
| !! | TTAAATAAATAATAGAAGCG+CGG | - | chr7.4:3052990-3053009 | None:intergenic | 20.0% |
| !!! | AAGAAAATGTTTCCATTTTT+GGG | - | chr7.4:3053405-3053424 | None:intergenic | 20.0% |
| !!! | GATTTTATTTTTTTTGTGAC+CGG | + | chr7.4:3053189-3053208 | MS.gene066547:intron | 20.0% |
| !!! | GTTTCATTTTTAATATCTTG+AGG | + | chr7.4:3052795-3052814 | MS.gene066547:intron | 20.0% |
| !!! | TAAGAAAATGTTTCCATTTT+TGG | - | chr7.4:3053406-3053425 | None:intergenic | 20.0% |
| !!! | TGTTGTCAATTTAGAATAAT+GGG | - | chr7.4:3053547-3053566 | None:intergenic | 20.0% |
| !!! | TTGTTGTCAATTTAGAATAA+TGG | - | chr7.4:3053548-3053567 | None:intergenic | 20.0% |
| ! | ATGAAACAAATTATTGTCCA+AGG | - | chr7.4:3052782-3052801 | None:intergenic | 25.0% |
| !! | CTTTTGAATCTGTTTAATAC+AGG | + | chr7.4:3053028-3053047 | MS.gene066547:intron | 25.0% |
| !! | TTTTGCATAACATTTCATCT+CGG | + | chr7.4:3053947-3053966 | MS.gene066547:intron | 25.0% |
| !!! | AACCTTAATTTTTTGCATCA+CGG | - | chr7.4:3054108-3054127 | None:intergenic | 25.0% |
| !!! | AAGCACATTTTAAAGATAAC+CGG | - | chr7.4:3053211-3053230 | None:intergenic | 25.0% |
| !!! | TTTTAGTTATCTTCTTTTCC+AGG | + | chr7.4:3053160-3053179 | MS.gene066547:intron | 25.0% |
| !!! | TTTTTTAAACATTGACTGTG+CGG | + | chr7.4:3054069-3054088 | MS.gene066547:intron | 25.0% |
| AAAAATAAAATCAAGTGGCC+TGG | - | chr7.4:3053181-3053200 | None:intergenic | 30.0% | |
| AAACAAAAACTTACTCTTCG+CGG | - | chr7.4:3052597-3052616 | None:intergenic | 30.0% | |
| AACTTCCCTCAACAATAAAT+GGG | - | chr7.4:3053728-3053747 | None:intergenic | 30.0% | |
| AAGGTTCAAATGATCTTTAG+AGG | + | chr7.4:3054122-3054141 | MS.gene066547:intron | 30.0% | |
| AATTGTCCCATTTATTGTTG+AGG | + | chr7.4:3053719-3053738 | MS.gene066547:intron | 30.0% | |
| ACATTTCAATCCTAATGGTA+AGG | + | chr7.4:3053054-3053073 | MS.gene066547:CDS | 30.0% | |
| AGATTCATTCAAGCAAATTG+AGG | - | chr7.4:3052855-3052874 | None:intergenic | 30.0% | |
| ATTGTCCCATTTATTGTTGA+GGG | + | chr7.4:3053720-3053739 | MS.gene066547:intron | 30.0% | |
| ATTTGTGACGATCACTTTAT+AGG | - | chr7.4:3053813-3053832 | None:intergenic | 30.0% | |
| GATTAAAAGTTGAAACTCTC+AGG | - | chr7.4:3053573-3053592 | None:intergenic | 30.0% | |
| GATTCATTCAAGCAAATTGA+GGG | - | chr7.4:3052854-3052873 | None:intergenic | 30.0% | |
| GCAATACATGTTAATCGATT+TGG | - | chr7.4:3052639-3052658 | None:intergenic | 30.0% | |
| TAACTTCCCTCAACAATAAA+TGG | - | chr7.4:3053729-3053748 | None:intergenic | 30.0% | |
| TTACCATTAGGATTGAAATG+TGG | - | chr7.4:3053055-3053074 | None:intergenic | 30.0% | |
| TTGCTTGAATGAATCTAAAG+TGG | + | chr7.4:3052859-3052878 | MS.gene066547:intron | 30.0% | |
| !! | AACTTTAAAATGGTTTCCTC+TGG | + | chr7.4:3053241-3053260 | MS.gene066547:intron | 30.0% |
| !! | TTGGAAACACTTTTTGTGTT+TGG | + | chr7.4:3053759-3053778 | MS.gene066547:intron | 30.0% |
| AACACAATTCATTCTCGACT+TGG | - | chr7.4:3052945-3052964 | None:intergenic | 35.0% | |
| AAGTGATCGTCACAAATTCA+AGG | + | chr7.4:3053816-3053835 | MS.gene066547:intron | 35.0% | |
| ACATACCTGATTGTCAGTAA+TGG | - | chr7.4:3053295-3053314 | None:intergenic | 35.0% | |
| ACCAAACTCAATCATAGGAA+GGG | + | chr7.4:3053626-3053645 | MS.gene066547:CDS | 35.0% | |
| AGTGATCGTCACAAATTCAA+GGG | + | chr7.4:3053817-3053836 | MS.gene066547:intron | 35.0% | |
| CATGTTAAGCAACCCAAAAA+TGG | + | chr7.4:3053390-3053409 | MS.gene066547:intron | 35.0% | |
| CTTAAGACCAGAAAGATTTC+CGG | - | chr7.4:3052688-3052707 | None:intergenic | 35.0% | |
| GACTGTGCGGTATAAAAAAA+AGG | + | chr7.4:3054082-3054101 | MS.gene066547:intron | 35.0% | |
| GATTTAGGAAATGTCACTGT+CGG | + | chr7.4:3053115-3053134 | MS.gene066547:CDS | 35.0% | |
| TGTCATATTATGCTAGAGCT+AGG | - | chr7.4:3053872-3053891 | None:intergenic | 35.0% | |
| ! | GGGAAGTTAACACAATCTTT+TGG | + | chr7.4:3053740-3053759 | MS.gene066547:intron | 35.0% |
| !! | AATCATTAACTTGTGCCTTG+AGG | + | chr7.4:3053505-3053524 | MS.gene066547:intron | 35.0% |
| !! | ATCATTAACTTGTGCCTTGA+GGG | + | chr7.4:3053506-3053525 | MS.gene066547:intron | 35.0% |
| AATCCTAATGGTAAGGAGCA+CGG | + | chr7.4:3053061-3053080 | MS.gene066547:CDS | 40.0% | |
| ACAAATGGTTGCATGTCAAC+TGG | + | chr7.4:3052750-3052769 | MS.gene066547:CDS | 40.0% | |
| ACATGTATTGCGAATTGTGC+AGG | + | chr7.4:3052648-3052667 | MS.gene066547:intron | 40.0% | |
| ACTGGACCAAACTCAATCAT+AGG | + | chr7.4:3053621-3053640 | MS.gene066547:CDS | 40.0% | |
| AGGCACTATTGAGTATGAGT+CGG | + | chr7.4:3052815-3052834 | MS.gene066547:intron | 40.0% | |
| AGTTGACATGCAACCATTTG+TGG | - | chr7.4:3052751-3052770 | None:intergenic | 40.0% | |
| ATGTCAACTGGTAAAGTCCT+TGG | + | chr7.4:3052762-3052781 | MS.gene066547:intron | 40.0% | |
| ATTCGACATGCTGGTGATTT+AGG | + | chr7.4:3053100-3053119 | MS.gene066547:CDS | 40.0% | |
| CTTCACCATTACTGACAATC+AGG | + | chr7.4:3053287-3053306 | MS.gene066547:CDS | 40.0% | |
| GACCAAACTCAATCATAGGA+AGG | + | chr7.4:3053625-3053644 | MS.gene066547:CDS | 40.0% | |
| GGACCACATTTCAATCCTAA+TGG | + | chr7.4:3053049-3053068 | MS.gene066547:intron | 40.0% | |
| GGCCGTGATGCAAAAAATTA+AGG | + | chr7.4:3054103-3054122 | MS.gene066547:intron | 40.0% | |
| GGTAACAGTAATGATGTCTC+TGG | + | chr7.4:3052518-3052537 | MS.gene066547:CDS | 40.0% | |
| TGGTAAGTTTCAACAGCCTT+TGG | + | chr7.4:3052568-3052587 | MS.gene066547:CDS | 40.0% | |
| TTGCTTAACATGTGCCCTAA+GGG | - | chr7.4:3053382-3053401 | None:intergenic | 40.0% | |
| TTTCCCAAGATCATCAGGAT+CGG | - | chr7.4:3053667-3053686 | None:intergenic | 40.0% | |
| ! | ACTATTAGCTTCTCTCAGGA+GGG | + | chr7.4:3052542-3052561 | MS.gene066547:CDS | 40.0% |
| ! | GTGAGAAGTTCTGACAATCA+TGG | + | chr7.4:3054165-3054184 | MS.gene066547:CDS | 40.0% |
| ! | TACTATTAGCTTCTCTCAGG+AGG | + | chr7.4:3052541-3052560 | MS.gene066547:CDS | 40.0% |
| ! | TGGTACTATTAGCTTCTCTC+AGG | + | chr7.4:3052538-3052557 | MS.gene066547:CDS | 40.0% |
| !! | AATCTTTCTGGTCTTAAGCC+TGG | + | chr7.4:3052690-3052709 | MS.gene066547:CDS | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | - | chr7.4:3053523-3053542 | None:intergenic | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | + | chr7.4:3053365-3053384 | MS.gene066547:intron | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | + | chr7.4:3053364-3053383 | MS.gene066547:intron | 40.0% |
| AAGACTACTGGAAATGCTGG+TGG | + | chr7.4:3054000-3054019 | MS.gene066547:CDS | 45.0% | |
| ACTGTGACCGGAAATCTTTC+TGG | + | chr7.4:3052678-3052697 | MS.gene066547:CDS | 45.0% | |
| AGAAAGATTTCCGGTCACAG+TGG | - | chr7.4:3052679-3052698 | None:intergenic | 45.0% | |
| AGCAAGACTACTGGAAATGC+TGG | + | chr7.4:3053997-3054016 | MS.gene066547:CDS | 45.0% | |
| ATGCCGATCCTGATGATCTT+GGG | + | chr7.4:3053661-3053680 | MS.gene066547:CDS | 45.0% | |
| ATGTCGAATCTCATCCTCAG+GGG | - | chr7.4:3053089-3053108 | None:intergenic | 45.0% | |
| ATTGAGTTTGGTCCAGTGAG+AGG | - | chr7.4:3053618-3053637 | None:intergenic | 45.0% | |
| CATGAGCTTAGCAAGACTAC+TGG | + | chr7.4:3053988-3054007 | MS.gene066547:CDS | 45.0% | |
| CATGTCGAATCTCATCCTCA+GGG | - | chr7.4:3053090-3053109 | None:intergenic | 45.0% | |
| GATCCTGATGATCTTGGGAA+AGG | + | chr7.4:3053666-3053685 | MS.gene066547:CDS | 45.0% | |
| GCCCTTCCTATGATTGAGTT+TGG | - | chr7.4:3053630-3053649 | None:intergenic | 45.0% | |
| GGCACTATTGAGTATGAGTC+GGG | + | chr7.4:3052816-3052835 | MS.gene066547:intron | 45.0% | |
| GTACCTTTCCCAAGATCATC+AGG | - | chr7.4:3053672-3053691 | None:intergenic | 45.0% | |
| GTCAGTAATGGTGAAGCTTG+CGG | - | chr7.4:3053283-3053302 | None:intergenic | 45.0% | |
| GTTGCTTAACATGTGCCCTA+AGG | - | chr7.4:3053383-3053402 | None:intergenic | 45.0% | |
| TCATCTCGGTACTGCTGTAT+AGG | + | chr7.4:3053961-3053980 | MS.gene066547:intron | 45.0% | |
| TTCCTCTGGTTGTGTAACTC+AGG | + | chr7.4:3053255-3053274 | MS.gene066547:intron | 45.0% | |
| TTCCTGAGTTACACAACCAG+AGG | - | chr7.4:3053260-3053279 | None:intergenic | 45.0% | |
| TTGAGTTTGGTCCAGTGAGA+GGG | - | chr7.4:3053617-3053636 | None:intergenic | 45.0% | |
| AATGTCACTGTCGGCGATGA+TGG | + | chr7.4:3053124-3053143 | MS.gene066547:CDS | 50.0% | |
| AGATTTCCGGTCACAGTGGT+TGG | - | chr7.4:3052675-3052694 | None:intergenic | 50.0% | |
| AGCTTCTCTCAGGAGGGAAA+TGG | + | chr7.4:3052548-3052567 | MS.gene066547:CDS | 50.0% | |
| AGGCATGGATATGGAAGCCA+TGG | - | chr7.4:3052719-3052738 | None:intergenic | 50.0% | |
| CATGCCGATCCTGATGATCT+TGG | + | chr7.4:3053660-3053679 | MS.gene066547:CDS | 50.0% | |
| CATGGATATGGAAGCCATGG+AGG | - | chr7.4:3052716-3052735 | None:intergenic | 50.0% | |
| CTTCCATATCCATGCCTTGG+GGG | + | chr7.4:3052722-3052741 | MS.gene066547:CDS | 50.0% | |
| GAGGATGAGATTCGACATGC+TGG | + | chr7.4:3053091-3053110 | MS.gene066547:CDS | 50.0% | |
| GCATGTCGAATCTCATCCTC+AGG | - | chr7.4:3053091-3053110 | None:intergenic | 50.0% | |
| GCTTCCATATCCATGCCTTG+GGG | + | chr7.4:3052721-3052740 | MS.gene066547:CDS | 50.0% | |
| GGCTTCCATATCCATGCCTT+GGG | + | chr7.4:3052720-3052739 | MS.gene066547:CDS | 50.0% | |
| TCTCGGTACTGCTGTATAGG+TGG | + | chr7.4:3053964-3053983 | MS.gene066547:intron | 50.0% | |
| TGGCTTCCATATCCATGCCT+TGG | + | chr7.4:3052719-3052738 | MS.gene066547:CDS | 50.0% | |
| TGTTCACAGATCCCTCTCAC+TGG | + | chr7.4:3053603-3053622 | MS.gene066547:intron | 50.0% | |
| TTACTCTTCGCGGAGACCAA+AGG | - | chr7.4:3052587-3052606 | None:intergenic | 50.0% | |
| ACCATTTGTGGTGTCCCCCA+AGG | - | chr7.4:3052739-3052758 | None:intergenic | 55.0% | |
| ATATGGAAGCCATGGAGGCC+AGG | - | chr7.4:3052711-3052730 | None:intergenic | 55.0% | |
| GCACCGTGCTCCTTACCATT+AGG | - | chr7.4:3053067-3053086 | None:intergenic | 55.0% | |
| GTGAAGGCTGTGGCAGTTCT+TGG | + | chr7.4:3052497-3052516 | MS.gene066547:CDS | 55.0% | |
| TGTCCCCCAAGGCATGGATA+TGG | - | chr7.4:3052728-3052747 | None:intergenic | 55.0% | |
| ! | CACTGTCGGCGATGATGGTA+TGG | + | chr7.4:3053129-3053148 | MS.gene066547:intron | 55.0% |
| GCAGGTCCAACCACTGTGAC+CGG | + | chr7.4:3052666-3052685 | MS.gene066547:intron | 60.0% | |
| GCCTTGGGGGACACCACAAA+TGG | + | chr7.4:3052735-3052754 | MS.gene066547:CDS | 60.0% | |
| GCTGGTGGCAGAGTAGCTTG+TGG | + | chr7.4:3054015-3054034 | MS.gene066547:CDS | 60.0% | |
| GGTCTTAAGCCTGGCCTCCA+TGG | + | chr7.4:3052699-3052718 | MS.gene066547:CDS | 60.0% | |
| TTGTGGTGTCCCCCAAGGCA+TGG | - | chr7.4:3052734-3052753 | None:intergenic | 60.0% | |
| ! | TAAGGAGCACGGTGCCCCTG+AGG | + | chr7.4:3053072-3053091 | MS.gene066547:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 3052494 | 3054197 | 3052494 | ID=MS.gene066547 |
| chr7.4 | mRNA | 3052494 | 3054197 | 3052494 | ID=MS.gene066547.t1;Parent=MS.gene066547 |
| chr7.4 | exon | 3052494 | 3052602 | 3052494 | ID=MS.gene066547.t1.exon1;Parent=MS.gene066547.t1 |
| chr7.4 | CDS | 3052494 | 3052602 | 3052494 | ID=cds.MS.gene066547.t1;Parent=MS.gene066547.t1 |
| chr7.4 | exon | 3052670 | 3052771 | 3052670 | ID=MS.gene066547.t1.exon2;Parent=MS.gene066547.t1 |
| chr7.4 | CDS | 3052670 | 3052771 | 3052670 | ID=cds.MS.gene066547.t1;Parent=MS.gene066547.t1 |
| chr7.4 | exon | 3053050 | 3053145 | 3053050 | ID=MS.gene066547.t1.exon3;Parent=MS.gene066547.t1 |
| chr7.4 | CDS | 3053050 | 3053145 | 3053050 | ID=cds.MS.gene066547.t1;Parent=MS.gene066547.t1 |
| chr7.4 | exon | 3053277 | 3053308 | 3053277 | ID=MS.gene066547.t1.exon4;Parent=MS.gene066547.t1 |
| chr7.4 | CDS | 3053277 | 3053308 | 3053277 | ID=cds.MS.gene066547.t1;Parent=MS.gene066547.t1 |
| chr7.4 | exon | 3053612 | 3053687 | 3053612 | ID=MS.gene066547.t1.exon5;Parent=MS.gene066547.t1 |
| chr7.4 | CDS | 3053612 | 3053687 | 3053612 | ID=cds.MS.gene066547.t1;Parent=MS.gene066547.t1 |
| chr7.4 | exon | 3053983 | 3054036 | 3053983 | ID=MS.gene066547.t1.exon6;Parent=MS.gene066547.t1 |
| chr7.4 | CDS | 3053983 | 3054036 | 3053983 | ID=cds.MS.gene066547.t1;Parent=MS.gene066547.t1 |
| chr7.4 | exon | 3054142 | 3054197 | 3054142 | ID=MS.gene066547.t1.exon7;Parent=MS.gene066547.t1 |
| chr7.4 | CDS | 3054142 | 3054197 | 3054142 | ID=cds.MS.gene066547.t1;Parent=MS.gene066547.t1 |
| Gene Sequence |
| Protein sequence |
