Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066617.t1 | XP_003605064.2 | 97.8 | 223 | 5 | 0 | 1 | 223 | 64 | 286 | 3.70E-116 | 427.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066617.t1 | P54168 | 35.9 | 217 | 111 | 6 | 1 | 214 | 1 | 192 | 2.1e-19 | 97.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066617.t1 | G7JDD3 | 97.8 | 223 | 5 | 0 | 1 | 223 | 64 | 286 | 2.6e-116 | 427.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050642 | MS.gene066617 | 0.812232 | 4.70E-51 | -1.69E-46 |
| MS.gene051064 | MS.gene066617 | 0.803875 | 2.83E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene066617 | 0.817531 | 3.14E-52 | -1.69E-46 |
| MS.gene052309 | MS.gene066617 | -0.833532 | 5.05E-56 | -1.69E-46 |
| MS.gene056087 | MS.gene066617 | 0.804645 | 1.96E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene066617 | -0.813304 | 2.74E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066617.t1 | MTR_4g023480 | 97.758 | 223 | 5 | 0 | 1 | 223 | 64 | 286 | 5.41e-161 | 446 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066617.t1 | AT1G17330 | 77.064 | 218 | 50 | 0 | 6 | 223 | 5 | 222 | 7.88e-121 | 342 |
Find 55 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGGAGCTTCTCATGAAAA+TGG | 0.305518 | 4.2:-79418901 | None:intergenic |
| TTTGAAGATCATCAAAGAAA+TGG | 0.317424 | 4.2:+79417853 | MS.gene066617:CDS |
| GCCAAGATCTGATCTATCTA+AGG | 0.320518 | 4.2:+79418841 | MS.gene066617:CDS |
| ACTGAACGGAGTCCAGAATT+TGG | 0.354191 | 4.2:+79418554 | MS.gene066617:CDS |
| CTCATGATGCGGCACATGTT+TGG | 0.359860 | 4.2:+79417228 | MS.gene066617:CDS |
| TCTTGGACAACACCAAATTC+TGG | 0.364335 | 4.2:-79418566 | None:intergenic |
| CTTGATGCTATTGGTGCTAT+AGG | 0.384019 | 4.2:+79418599 | MS.gene066617:CDS |
| GCTGCACTGCTCCATGATAT+AGG | 0.400352 | 4.2:+79417420 | MS.gene066617:CDS |
| TCCTTAGATAGATCAGATCT+TGG | 0.401064 | 4.2:-79418842 | None:intergenic |
| CTCTCCCTTGCCACCGAGGA+AGG | 0.423845 | 4.2:+79417269 | MS.gene066617:CDS |
| ATAGTTGCTTACCTATATCA+TGG | 0.428518 | 4.2:-79417431 | None:intergenic |
| TTGAAGATCATCAAAGAAAT+GGG | 0.433662 | 4.2:+79417854 | MS.gene066617:CDS |
| AAAGAGGAGGTGACGGGAAA+AGG | 0.434863 | 4.2:+79418527 | MS.gene066617:CDS |
| CATCAAGCCTATCAGCATCT+TGG | 0.454662 | 4.2:-79418583 | None:intergenic |
| ATTGCACGTTGCTTCACATT+CGG | 0.458789 | 4.2:+79418779 | MS.gene066617:CDS |
| CTCTTCTGACCCGCATTCCA+TGG | 0.460854 | 4.2:+79417295 | MS.gene066617:CDS |
| GCTGATAGGCTTGATGCTAT+TGG | 0.472702 | 4.2:+79418590 | MS.gene066617:CDS |
| GTGTTGTCCAAGATGCTGAT+AGG | 0.474522 | 4.2:+79418576 | MS.gene066617:CDS |
| TCAGATCTTGGCAAAATAGC+AGG | 0.474774 | 4.2:-79418830 | None:intergenic |
| TCTTGAGGAAGAGGGAGTTG+AGG | 0.475838 | 4.2:+79417811 | MS.gene066617:CDS |
| GGAGAGAAAGCACAAGTTCA+TGG | 0.478743 | 4.2:+79419147 | MS.gene066617:CDS |
| TCATCATATCTTTAAGCTTG+AGG | 0.493256 | 4.2:-79418919 | None:intergenic |
| ATGATGCGGCACATGTTTGG+AGG | 0.501839 | 4.2:+79417231 | MS.gene066617:CDS |
| CACGTTGCTTCACATTCGGC+GGG | 0.506510 | 4.2:+79418783 | MS.gene066617:CDS |
| TAGGATAGTTACAATTTCCA+TGG | 0.508969 | 4.2:-79417312 | None:intergenic |
| GTCAGAAGAGAGGCCTTCCT+CGG | 0.523559 | 4.2:-79417282 | None:intergenic |
| CATTTCAGGCTGGGCAAAGG+AGG | 0.525095 | 4.2:+79419122 | MS.gene066617:intron |
| TCAAAGAGTTCTACGACGAA+TGG | 0.526682 | 4.2:+79419179 | MS.gene066617:CDS |
| AATAAGAAAGGCTGAGGCGT+TGG | 0.532558 | 4.2:+79417175 | MS.gene066617:CDS |
| AGAGGCCTTCCTCGGTGGCA+AGG | 0.535275 | 4.2:-79417274 | None:intergenic |
| ATTTCAGGCTGGGCAAAGGA+GGG | 0.541101 | 4.2:+79419123 | MS.gene066617:intron |
| TTACAATTTCCATGGAATGC+GGG | 0.542408 | 4.2:-79417304 | None:intergenic |
| GAGGCCTTCCTCGGTGGCAA+GGG | 0.544423 | 4.2:-79417273 | None:intergenic |
| ATCCATTTCAGGCTGGGCAA+AGG | 0.545547 | 4.2:+79419119 | MS.gene066617:intron |
| TGGTTGAGAAAGCGATGAAA+GGG | 0.553284 | 4.2:+79417195 | MS.gene066617:CDS |
| TTGGTTGAGAAAGCGATGAA+AGG | 0.561138 | 4.2:+79417194 | MS.gene066617:CDS |
| CGGTGGCAAGGGAGAGAGCA+AGG | 0.570258 | 4.2:-79417262 | None:intergenic |
| AAGAGAGACGATGGAAAAGA+CGG | 0.574216 | 4.2:+79417148 | None:intergenic |
| TCAGGCTGGGCAAAGGAGGG+CGG | 0.579737 | 4.2:+79419126 | MS.gene066617:intron |
| TGATGCGGCACATGTTTGGA+GGG | 0.590520 | 4.2:+79417232 | MS.gene066617:CDS |
| AAAGACGGACACAATAAGAA+AGG | 0.590777 | 4.2:+79417163 | MS.gene066617:CDS |
| GTTACAATTTCCATGGAATG+CGG | 0.593875 | 4.2:-79417305 | None:intergenic |
| TGCTCTCTCCCTTGCCACCG+AGG | 0.611184 | 4.2:+79417265 | MS.gene066617:CDS |
| TGGAATGCGGGTCAGAAGAG+AGG | 0.617247 | 4.2:-79417292 | None:intergenic |
| GCACGTTGCTTCACATTCGG+CGG | 0.624085 | 4.2:+79418782 | MS.gene066617:CDS |
| CATTCGGCGGGAGTAAGAAG+AGG | 0.625922 | 4.2:+79418795 | MS.gene066617:CDS |
| GAGTTCTACGACGAATGGAA+CGG | 0.628121 | 4.2:+79419184 | MS.gene066617:CDS |
| GGACACAATAAGAAAGGCTG+AGG | 0.631192 | 4.2:+79417169 | MS.gene066617:CDS |
| GAATGACGCTTCTCATGATG+CGG | 0.637516 | 4.2:+79417217 | MS.gene066617:CDS |
| ATTCGGCGGGAGTAAGAAGA+GGG | 0.649996 | 4.2:+79418796 | MS.gene066617:CDS |
| TAAAGATATGATGAAAACCA+AGG | 0.666397 | 4.2:+79418928 | MS.gene066617:CDS |
| AGAAGAGAGGCCTTCCTCGG+TGG | 0.681062 | 4.2:-79417279 | None:intergenic |
| CGGGAAAAGGAACTACTGAA+CGG | 0.693020 | 4.2:+79418540 | MS.gene066617:CDS |
| GAGAAAGCACAAGTTCATGG+AGG | 0.726930 | 4.2:+79419150 | MS.gene066617:CDS |
| CAGGTGACTACAAATACCTG+AGG | 0.728521 | 4.2:+79417554 | MS.gene066617:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCAATAAAGTAATATA+AGG | + | chr4.2:79417954-79417973 | MS.gene066617:intron | 10.0% |
| !! | TAATTTCCAATAAATAAACA+AGG | - | chr4.2:79418464-79418483 | None:intergenic | 15.0% |
| !!! | ATAATTTCAAGTACTAATTT+AGG | + | chr4.2:79418075-79418094 | MS.gene066617:intron | 15.0% |
| !!! | CTTTGAAAAAATACATTTAT+AGG | + | chr4.2:79419056-79419075 | MS.gene066617:intron | 15.0% |
| !! | ATTATACAAAAGATATGAGA+AGG | - | chr4.2:79418353-79418372 | None:intergenic | 20.0% |
| !! | ATTTATTAGCAAACTACAAT+TGG | - | chr4.2:79417516-79417535 | None:intergenic | 20.0% |
| !! | TATGAAGGTTAAAAAGATAA+TGG | - | chr4.2:79417360-79417379 | None:intergenic | 20.0% |
| !! | TGAACAAAATGAAAAACAAA+AGG | - | chr4.2:79417714-79417733 | None:intergenic | 20.0% |
| !! | TGATAATATAATCTGTTTCA+TGG | + | chr4.2:79418167-79418186 | MS.gene066617:intron | 20.0% |
| !! | TTATACAAAAGATATGAGAA+GGG | - | chr4.2:79418352-79418371 | None:intergenic | 20.0% |
| !!! | ACTTATCCTTGTTTATTTAT+TGG | + | chr4.2:79418455-79418474 | MS.gene066617:intron | 20.0% |
| !!! | GATAATGGTAATATAGAAAT+AGG | - | chr4.2:79417345-79417364 | None:intergenic | 20.0% |
| !!! | TTATCTTTTTAACCTTCATA+TGG | + | chr4.2:79417360-79417379 | MS.gene066617:intron | 20.0% |
| !!! | TTTTGGGTTAAAATTTGATA+AGG | - | chr4.2:79418979-79418998 | None:intergenic | 20.0% |
| ! | AAAATGGAAAAATGAGAATG+AGG | - | chr4.2:79417389-79417408 | None:intergenic | 25.0% |
| ! | ACATGAAAAAGTAAGAACTT+AGG | - | chr4.2:79417914-79417933 | None:intergenic | 25.0% |
| ! | CTTTAATTAGAGAACAGAAA+AGG | - | chr4.2:79418012-79418031 | None:intergenic | 25.0% |
| ! | GGTCAATAAAATTATAGTAG+AGG | - | chr4.2:79418958-79418977 | None:intergenic | 25.0% |
| ! | GTAATATAGAAATAGGAAGA+AGG | - | chr4.2:79417338-79417357 | None:intergenic | 25.0% |
| ! | TAAAGATATGATGAAAACCA+AGG | + | chr4.2:79418928-79418947 | MS.gene066617:CDS | 25.0% |
| ! | TATCCTATTGCTAGAAAATT+GGG | + | chr4.2:79418639-79418658 | MS.gene066617:intron | 25.0% |
| ! | TATTTATACTTACTAACCTC+AGG | - | chr4.2:79417573-79417592 | None:intergenic | 25.0% |
| ! | TTGAAGATCATCAAAGAAAT+GGG | + | chr4.2:79417854-79417873 | MS.gene066617:CDS | 25.0% |
| ! | TTTGAAGATCATCAAAGAAA+TGG | + | chr4.2:79417853-79417872 | MS.gene066617:CDS | 25.0% |
| !! | AACTGTTGAAAATTTTCTTG+AGG | + | chr4.2:79417796-79417815 | MS.gene066617:CDS | 25.0% |
| !! | TTTACTTTGTTTATAACTGC+AGG | + | chr4.2:79417535-79417554 | MS.gene066617:intron | 25.0% |
| !!! | CATTCTCATTTTTCCATTTT+AGG | + | chr4.2:79417389-79417408 | MS.gene066617:intron | 25.0% |
| !!! | TTAATTTTGATGCATGATCT+CGG | + | chr4.2:79418140-79418159 | MS.gene066617:intron | 25.0% |
| AAGAATGCAGCAGATAAATT+TGG | - | chr4.2:79419039-79419058 | None:intergenic | 30.0% | |
| AGGATAAGTTGCAAACAAAA+TGG | - | chr4.2:79418444-79418463 | None:intergenic | 30.0% | |
| AGGTAAGCAACTATAATTGT+AGG | + | chr4.2:79417440-79417459 | MS.gene066617:intron | 30.0% | |
| AGTATTAGCTCATATGAGAA+GGG | - | chr4.2:79417747-79417766 | None:intergenic | 30.0% | |
| ATAAAAAACCACACACTACA+CGG | - | chr4.2:79417478-79417497 | None:intergenic | 30.0% | |
| ATAGTTGCTTACCTATATCA+TGG | - | chr4.2:79417434-79417453 | None:intergenic | 30.0% | |
| GGAAAAATACATGAACAAAG+AGG | + | chr4.2:79418862-79418881 | MS.gene066617:CDS | 30.0% | |
| GTATAATTCCTTCCAAAAGT+TGG | + | chr4.2:79418366-79418385 | MS.gene066617:intron | 30.0% | |
| GTATCCTATTGCTAGAAAAT+TGG | + | chr4.2:79418638-79418657 | MS.gene066617:intron | 30.0% | |
| GTCATAATTCTGCATTCAAA+GGG | - | chr4.2:79418672-79418691 | None:intergenic | 30.0% | |
| TAGGATAGTTACAATTTCCA+TGG | - | chr4.2:79417315-79417334 | None:intergenic | 30.0% | |
| TATAGAAATAGGAAGAAGGT+AGG | - | chr4.2:79417334-79417353 | None:intergenic | 30.0% | |
| TCATCATATCTTTAAGCTTG+AGG | - | chr4.2:79418922-79418941 | None:intergenic | 30.0% | |
| TGATTTAAGCTATCCATTTC+AGG | + | chr4.2:79419108-79419127 | MS.gene066617:intron | 30.0% | |
| TGTCATAATTCTGCATTCAA+AGG | - | chr4.2:79418673-79418692 | None:intergenic | 30.0% | |
| ! | CTTTGTTTGCCTTCAATATT+AGG | + | chr4.2:79418755-79418774 | MS.gene066617:intron | 30.0% |
| ! | GAAAATTTTCTTGAGGAAGA+GGG | + | chr4.2:79417803-79417822 | MS.gene066617:CDS | 30.0% |
| ! | TGAAAATTTTCTTGAGGAAG+AGG | + | chr4.2:79417802-79417821 | MS.gene066617:CDS | 30.0% |
| !! | AGCTAATACTGTGTCATTTA+GGG | + | chr4.2:79417757-79417776 | MS.gene066617:intron | 30.0% |
| !! | ATTCCCAATTTTCTAGCAAT+AGG | - | chr4.2:79418645-79418664 | None:intergenic | 30.0% |
| !! | CCTCTTTAAAACCTGAATAT+TGG | - | chr4.2:79418514-79418533 | None:intergenic | 30.0% |
| !!! | ATATTCAGGTTTTAAAGAGG+AGG | + | chr4.2:79418514-79418533 | MS.gene066617:intron | 30.0% |
| !!! | CCAATATTCAGGTTTTAAAG+AGG | + | chr4.2:79418511-79418530 | MS.gene066617:intron | 30.0% |
| !!! | TCAACAGTTTTTTCTTCAGA+TGG | - | chr4.2:79417785-79417804 | None:intergenic | 30.0% |
| !!! | TTCACGCTTAGTCTTTTTTT+GGG | - | chr4.2:79418995-79419014 | None:intergenic | 30.0% |
| !!! | TTTCACGCTTAGTCTTTTTT+TGG | - | chr4.2:79418996-79419015 | None:intergenic | 30.0% |
| AAAGACGGACACAATAAGAA+AGG | + | chr4.2:79417163-79417182 | MS.gene066617:CDS | 35.0% | |
| ACAAAAGATATGAGAAGGGT+AGG | - | chr4.2:79418348-79418367 | None:intergenic | 35.0% | |
| CAGTATTAGCTCATATGAGA+AGG | - | chr4.2:79417748-79417767 | None:intergenic | 35.0% | |
| CATCAAAGAAATGGGTAAGT+TGG | + | chr4.2:79417862-79417881 | MS.gene066617:intron | 35.0% | |
| CGTGCAATTCCTAATATTGA+AGG | - | chr4.2:79418767-79418786 | None:intergenic | 35.0% | |
| GTATTAGCTCATATGAGAAG+GGG | - | chr4.2:79417746-79417765 | None:intergenic | 35.0% | |
| GTTACAATTTCCATGGAATG+CGG | - | chr4.2:79417308-79417327 | None:intergenic | 35.0% | |
| TAAGAACTTAGGCAAGAAAC+TGG | - | chr4.2:79417903-79417922 | None:intergenic | 35.0% | |
| TAAGTTGCAAACAAAATGGC+AGG | - | chr4.2:79418440-79418459 | None:intergenic | 35.0% | |
| TCCTTAGATAGATCAGATCT+TGG | - | chr4.2:79418845-79418864 | None:intergenic | 35.0% | |
| TGATGCTTCTTCCAATATTC+AGG | + | chr4.2:79418500-79418519 | MS.gene066617:intron | 35.0% | |
| TTACAATTTCCATGGAATGC+GGG | - | chr4.2:79417307-79417326 | None:intergenic | 35.0% | |
| TTTGACATGACTTTCAAAGC+AGG | + | chr4.2:79418105-79418124 | MS.gene066617:intron | 35.0% | |
| ! | ATTATAGTAGAGGTGTACCT+TGG | - | chr4.2:79418948-79418967 | None:intergenic | 35.0% |
| !! | CACGTTTTCATTTGAAGTGT+TGG | - | chr4.2:79418717-79418736 | None:intergenic | 35.0% |
| !! | GAGCTAATACTGTGTCATTT+AGG | + | chr4.2:79417756-79417775 | MS.gene066617:intron | 35.0% |
| AAACAACCAAGCCTTGAAGT+TGG | - | chr4.2:79417678-79417697 | None:intergenic | 40.0% | |
| AAGATATGAGAAGGGTAGGA+AGG | - | chr4.2:79418344-79418363 | None:intergenic | 40.0% | |
| AGAATTATGACAGCTCTTCG+AGG | + | chr4.2:79418681-79418700 | MS.gene066617:intron | 40.0% | |
| AGTACTATCCCTGATGATCA+TGG | + | chr4.2:79418316-79418335 | MS.gene066617:intron | 40.0% | |
| ATTGCACGTTGCTTCACATT+CGG | + | chr4.2:79418779-79418798 | MS.gene066617:CDS | 40.0% | |
| GCCAAGATCTGATCTATCTA+AGG | + | chr4.2:79418841-79418860 | MS.gene066617:CDS | 40.0% | |
| TAAGCTATCCATTTCAGGCT+GGG | + | chr4.2:79419113-79419132 | MS.gene066617:intron | 40.0% | |
| TCAAAGAGTTCTACGACGAA+TGG | + | chr4.2:79419179-79419198 | MS.gene066617:CDS | 40.0% | |
| TCAGATCTTGGCAAAATAGC+AGG | - | chr4.2:79418833-79418852 | None:intergenic | 40.0% | |
| TCTTGGACAACACCAAATTC+TGG | - | chr4.2:79418569-79418588 | None:intergenic | 40.0% | |
| TGAGGAGCTTCTCATGAAAA+TGG | - | chr4.2:79418904-79418923 | None:intergenic | 40.0% | |
| TGGTTGAGAAAGCGATGAAA+GGG | + | chr4.2:79417195-79417214 | MS.gene066617:CDS | 40.0% | |
| TTAAGCTATCCATTTCAGGC+TGG | + | chr4.2:79419112-79419131 | MS.gene066617:intron | 40.0% | |
| TTGGTTGAGAAAGCGATGAA+AGG | + | chr4.2:79417194-79417213 | MS.gene066617:CDS | 40.0% | |
| ! | AGTGTTGTTAGCCAACTTCA+AGG | + | chr4.2:79417664-79417683 | MS.gene066617:intron | 40.0% |
| ! | ATTTTTGTCCGTGTAGTGTG+TGG | + | chr4.2:79417467-79417486 | MS.gene066617:intron | 40.0% |
| !! | CTTGATGCTATTGGTGCTAT+AGG | + | chr4.2:79418599-79418618 | MS.gene066617:CDS | 40.0% |
| !!! | AGGTTTTAAAGAGGAGGTGA+CGG | + | chr4.2:79418520-79418539 | MS.gene066617:intron | 40.0% |
| AATAAGAAAGGCTGAGGCGT+TGG | + | chr4.2:79417175-79417194 | MS.gene066617:CDS | 45.0% | |
| ACTGAACGGAGTCCAGAATT+TGG | + | chr4.2:79418554-79418573 | MS.gene066617:CDS | 45.0% | |
| AGAATGAGGCGACCATATGA+AGG | - | chr4.2:79417375-79417394 | None:intergenic | 45.0% | |
| AGGAAGGAACCATGATCATC+AGG | - | chr4.2:79418328-79418347 | None:intergenic | 45.0% | |
| CAGGTGACTACAAATACCTG+AGG | + | chr4.2:79417554-79417573 | MS.gene066617:intron | 45.0% | |
| CATCAAGCCTATCAGCATCT+TGG | - | chr4.2:79418586-79418605 | None:intergenic | 45.0% | |
| CGGGAAAAGGAACTACTGAA+CGG | + | chr4.2:79418540-79418559 | MS.gene066617:CDS | 45.0% | |
| GAATGACGCTTCTCATGATG+CGG | + | chr4.2:79417217-79417236 | MS.gene066617:CDS | 45.0% | |
| GAGTTCTACGACGAATGGAA+CGG | + | chr4.2:79419184-79419203 | MS.gene066617:CDS | 45.0% | |
| GCAGCAAGCTCTACCTAAAA+TGG | - | chr4.2:79417405-79417424 | None:intergenic | 45.0% | |
| GCTGATAGGCTTGATGCTAT+TGG | + | chr4.2:79418590-79418609 | MS.gene066617:CDS | 45.0% | |
| GGAAGGAACCATGATCATCA+GGG | - | chr4.2:79418327-79418346 | None:intergenic | 45.0% | |
| GGACACAATAAGAAAGGCTG+AGG | + | chr4.2:79417169-79417188 | MS.gene066617:CDS | 45.0% | |
| GTGTTGTCCAAGATGCTGAT+AGG | + | chr4.2:79418576-79418595 | MS.gene066617:CDS | 45.0% | |
| TGTTAGCCAACTTCAAGGCT+TGG | + | chr4.2:79417669-79417688 | MS.gene066617:intron | 45.0% | |
| ! | GAGAAAGCACAAGTTCATGG+AGG | + | chr4.2:79419150-79419169 | MS.gene066617:CDS | 45.0% |
| ! | GGAGAGAAAGCACAAGTTCA+TGG | + | chr4.2:79419147-79419166 | MS.gene066617:CDS | 45.0% |
| ! | TTCAAAGACGCGCCAACTTT+TGG | - | chr4.2:79418381-79418400 | None:intergenic | 45.0% |
| !!! | GGTTTTAAAGAGGAGGTGAC+GGG | + | chr4.2:79418521-79418540 | MS.gene066617:intron | 45.0% |
| ATCCATTTCAGGCTGGGCAA+AGG | + | chr4.2:79419119-79419138 | MS.gene066617:intron | 50.0% | |
| ATGATGCGGCACATGTTTGG+AGG | + | chr4.2:79417231-79417250 | MS.gene066617:CDS | 50.0% | |
| ATTCGGCGGGAGTAAGAAGA+GGG | + | chr4.2:79418796-79418815 | MS.gene066617:CDS | 50.0% | |
| ATTTCAGGCTGGGCAAAGGA+GGG | + | chr4.2:79419123-79419142 | MS.gene066617:intron | 50.0% | |
| CTCATGATGCGGCACATGTT+TGG | + | chr4.2:79417228-79417247 | MS.gene066617:CDS | 50.0% | |
| GCTGCACTGCTCCATGATAT+AGG | + | chr4.2:79417420-79417439 | MS.gene066617:CDS | 50.0% | |
| TCTTGAGGAAGAGGGAGTTG+AGG | + | chr4.2:79417811-79417830 | MS.gene066617:CDS | 50.0% | |
| TGATGCGGCACATGTTTGGA+GGG | + | chr4.2:79417232-79417251 | MS.gene066617:CDS | 50.0% | |
| ! | AAGACGCGCCAACTTTTGGA+AGG | - | chr4.2:79418377-79418396 | None:intergenic | 50.0% |
| !! | AAAGAGGAGGTGACGGGAAA+AGG | + | chr4.2:79418527-79418546 | MS.gene066617:CDS | 50.0% |
| CACGTTGCTTCACATTCGGC+GGG | + | chr4.2:79418783-79418802 | MS.gene066617:CDS | 55.0% | |
| CATTCGGCGGGAGTAAGAAG+AGG | + | chr4.2:79418795-79418814 | MS.gene066617:CDS | 55.0% | |
| CATTTCAGGCTGGGCAAAGG+AGG | + | chr4.2:79419122-79419141 | MS.gene066617:intron | 55.0% | |
| CTCCTTTGCCCAGCCTGAAA+TGG | - | chr4.2:79419124-79419143 | None:intergenic | 55.0% | |
| CTCTTCTGACCCGCATTCCA+TGG | + | chr4.2:79417295-79417314 | MS.gene066617:CDS | 55.0% | |
| GCACGTTGCTTCACATTCGG+CGG | + | chr4.2:79418782-79418801 | MS.gene066617:CDS | 55.0% | |
| GTCAGAAGAGAGGCCTTCCT+CGG | - | chr4.2:79417285-79417304 | None:intergenic | 55.0% | |
| TGGAATGCGGGTCAGAAGAG+AGG | - | chr4.2:79417295-79417314 | None:intergenic | 55.0% | |
| AGAAGAGAGGCCTTCCTCGG+TGG | - | chr4.2:79417282-79417301 | None:intergenic | 60.0% | |
| AGAGGCCTTCCTCGGTGGCA+AGG | - | chr4.2:79417277-79417296 | None:intergenic | 65.0% | |
| CGGTGGCAAGGGAGAGAGCA+AGG | - | chr4.2:79417265-79417284 | None:intergenic | 65.0% | |
| CTCTCCCTTGCCACCGAGGA+AGG | + | chr4.2:79417269-79417288 | MS.gene066617:CDS | 65.0% | |
| GAGGCCTTCCTCGGTGGCAA+GGG | - | chr4.2:79417276-79417295 | None:intergenic | 65.0% | |
| TCAGGCTGGGCAAAGGAGGG+CGG | + | chr4.2:79419126-79419145 | MS.gene066617:intron | 65.0% | |
| TGCTCTCTCCCTTGCCACCG+AGG | + | chr4.2:79417265-79417284 | MS.gene066617:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 79417158 | 79419216 | 79417158 | ID=MS.gene066617 |
| chr4.2 | mRNA | 79417158 | 79419216 | 79417158 | ID=MS.gene066617.t1;Parent=MS.gene066617 |
| chr4.2 | exon | 79417158 | 79417322 | 79417158 | ID=MS.gene066617.t1.exon1;Parent=MS.gene066617.t1 |
| chr4.2 | CDS | 79417158 | 79417322 | 79417158 | ID=cds.MS.gene066617.t1;Parent=MS.gene066617.t1 |
| chr4.2 | exon | 79417411 | 79417441 | 79417411 | ID=MS.gene066617.t1.exon2;Parent=MS.gene066617.t1 |
| chr4.2 | CDS | 79417411 | 79417441 | 79417411 | ID=cds.MS.gene066617.t1;Parent=MS.gene066617.t1 |
| chr4.2 | exon | 79417557 | 79417575 | 79417557 | ID=MS.gene066617.t1.exon3;Parent=MS.gene066617.t1 |
| chr4.2 | CDS | 79417557 | 79417575 | 79417557 | ID=cds.MS.gene066617.t1;Parent=MS.gene066617.t1 |
| chr4.2 | exon | 79417778 | 79417875 | 79417778 | ID=MS.gene066617.t1.exon4;Parent=MS.gene066617.t1 |
| chr4.2 | CDS | 79417778 | 79417875 | 79417778 | ID=cds.MS.gene066617.t1;Parent=MS.gene066617.t1 |
| chr4.2 | exon | 79418522 | 79418620 | 79418522 | ID=MS.gene066617.t1.exon5;Parent=MS.gene066617.t1 |
| chr4.2 | CDS | 79418522 | 79418620 | 79418522 | ID=cds.MS.gene066617.t1;Parent=MS.gene066617.t1 |
| chr4.2 | exon | 79418777 | 79418949 | 79418777 | ID=MS.gene066617.t1.exon6;Parent=MS.gene066617.t1 |
| chr4.2 | CDS | 79418777 | 79418949 | 79418777 | ID=cds.MS.gene066617.t1;Parent=MS.gene066617.t1 |
| chr4.2 | exon | 79419130 | 79419216 | 79419130 | ID=MS.gene066617.t1.exon7;Parent=MS.gene066617.t1 |
| chr4.2 | CDS | 79419130 | 79419216 | 79419130 | ID=cds.MS.gene066617.t1;Parent=MS.gene066617.t1 |
| Gene Sequence |
| Protein sequence |
