Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066714.t1 | KEH29067.1 | 94.1 | 324 | 18 | 1 | 1 | 323 | 1 | 324 | 6.80E-172 | 613.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066714.t1 | P40025 | 30.2 | 159 | 103 | 2 | 33 | 183 | 48 | 206 | 5.0e-14 | 80.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066714.t1 | A0A072UHB0 | 94.1 | 324 | 18 | 1 | 1 | 323 | 1 | 324 | 4.9e-172 | 613.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066714 | MS.gene006477 | PPI |
| MS.gene066714 | MS.gene80067 | PPI |
| MS.gene066714 | MS.gene26907 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066714.t1 | MTR_4g021825 | 93.827 | 324 | 19 | 1 | 1 | 323 | 1 | 324 | 0.0 | 612 |
| MS.gene066714.t1 | MTR_7g062150 | 73.754 | 301 | 77 | 1 | 25 | 323 | 1 | 301 | 7.62e-166 | 463 |
| MS.gene066714.t1 | MTR_4g021800 | 75.601 | 291 | 63 | 3 | 34 | 323 | 13 | 296 | 4.92e-157 | 441 |
| MS.gene066714.t1 | MTR_4g021800 | 75.969 | 258 | 54 | 3 | 67 | 323 | 1 | 251 | 1.73e-137 | 390 |
| MS.gene066714.t1 | MTR_7g062150 | 72.609 | 230 | 61 | 1 | 25 | 252 | 1 | 230 | 1.16e-120 | 347 |
| MS.gene066714.t1 | MTR_4g021800 | 74.545 | 220 | 51 | 2 | 34 | 252 | 13 | 228 | 1.31e-113 | 328 |
| MS.gene066714.t1 | MTR_2g097520 | 54.608 | 293 | 118 | 3 | 34 | 323 | 11 | 291 | 8.78e-111 | 323 |
| MS.gene066714.t1 | MTR_4g064380 | 52.249 | 289 | 118 | 2 | 35 | 323 | 13 | 281 | 4.96e-105 | 308 |
| MS.gene066714.t1 | MTR_1g085570 | 48.611 | 288 | 100 | 2 | 36 | 323 | 18 | 257 | 7.79e-93 | 276 |
| MS.gene066714.t1 | MTR_1g085570 | 48.611 | 288 | 100 | 2 | 36 | 323 | 10 | 249 | 1.43e-92 | 276 |
| MS.gene066714.t1 | MTR_1g085570 | 48.443 | 289 | 100 | 3 | 36 | 323 | 10 | 250 | 5.99e-91 | 271 |
| MS.gene066714.t1 | MTR_1g085570 | 48.954 | 239 | 74 | 2 | 36 | 274 | 10 | 200 | 1.49e-75 | 231 |
| MS.gene066714.t1 | MTR_1g104610 | 41.971 | 274 | 114 | 4 | 31 | 301 | 3 | 234 | 2.28e-70 | 219 |
| MS.gene066714.t1 | MTR_1g104610 | 43.265 | 245 | 96 | 3 | 31 | 274 | 3 | 205 | 1.40e-63 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066714.t1 | AT5G02230 | 60.125 | 321 | 103 | 3 | 6 | 323 | 19 | 317 | 1.23e-127 | 367 |
| MS.gene066714.t1 | AT5G02230 | 61.921 | 302 | 90 | 3 | 25 | 323 | 1 | 280 | 1.06e-125 | 361 |
| MS.gene066714.t1 | AT5G02230 | 61.921 | 302 | 90 | 3 | 25 | 323 | 1 | 280 | 1.06e-125 | 361 |
| MS.gene066714.t1 | AT5G59480 | 53.846 | 299 | 115 | 4 | 25 | 319 | 1 | 280 | 4.19e-112 | 327 |
| MS.gene066714.t1 | AT5G59480 | 53.846 | 299 | 115 | 4 | 25 | 319 | 1 | 280 | 4.19e-112 | 327 |
| MS.gene066714.t1 | AT5G59480 | 53.846 | 299 | 115 | 4 | 25 | 319 | 1 | 280 | 4.19e-112 | 327 |
| MS.gene066714.t1 | AT5G59480 | 53.846 | 299 | 115 | 4 | 25 | 319 | 1 | 280 | 4.19e-112 | 327 |
| MS.gene066714.t1 | AT5G59480 | 53.846 | 299 | 114 | 5 | 25 | 319 | 1 | 279 | 6.55e-110 | 321 |
| MS.gene066714.t1 | AT5G59490 | 50.658 | 304 | 107 | 4 | 25 | 323 | 1 | 266 | 2.87e-95 | 283 |
| MS.gene066714.t1 | AT5G59490 | 53.200 | 250 | 79 | 3 | 25 | 274 | 1 | 212 | 2.98e-77 | 235 |
| MS.gene066714.t1 | AT3G62040 | 49.609 | 256 | 78 | 5 | 71 | 323 | 5 | 212 | 3.48e-76 | 233 |
| MS.gene066714.t1 | AT2G32150 | 42.424 | 264 | 111 | 3 | 38 | 301 | 7 | 229 | 1.24e-73 | 228 |
| MS.gene066714.t1 | AT2G32150 | 43.460 | 237 | 93 | 3 | 38 | 274 | 7 | 202 | 5.37e-62 | 197 |
| MS.gene066714.t1 | AT2G32150 | 42.396 | 217 | 84 | 3 | 38 | 254 | 7 | 182 | 3.31e-53 | 173 |
Find 63 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGAAGGCAATCATATTT+TGG | 0.184331 | 4.3:-76429422 | None:intergenic |
| ACCCTTCTTTACAAGAATTA+TGG | 0.236813 | 4.3:+76429767 | MS.gene066714:CDS |
| GATGATGACATTGAGTTTCT+AGG | 0.275326 | 4.3:+76430349 | MS.gene066714:CDS |
| AACAACTCTAGCAGGATTAA+AGG | 0.288819 | 4.3:+76429790 | MS.gene066714:CDS |
| AAAAGGTTCTCTTAGCAAAA+TGG | 0.308630 | 4.3:+76429373 | MS.gene066714:intron |
| CTGAGGCAATACCTGATCTA+TGG | 0.308840 | 4.3:+76431031 | MS.gene066714:CDS |
| ACAACTTACAAGTTTCCTAT+AGG | 0.317796 | 4.3:-76430102 | None:intergenic |
| TTCATTTCTATTCAGGCAAT+TGG | 0.321754 | 4.3:+76429886 | MS.gene066714:intron |
| CTGCTTGCACTACTACTTGT+TGG | 0.347300 | 4.3:-76430391 | None:intergenic |
| CAACTTACAAGTTTCCTATA+GGG | 0.370712 | 4.3:-76430101 | None:intergenic |
| GGATTAGAAGATTGCTTTGA+AGG | 0.372172 | 4.3:+76430271 | MS.gene066714:CDS |
| TGAAACCAGACCCAGTTCTA+AGG | 0.386637 | 4.3:+76430060 | MS.gene066714:CDS |
| TGTTGATGAGCCTGCCCTAT+AGG | 0.387214 | 4.3:+76430087 | MS.gene066714:CDS |
| CTTAAGACACTAAACATACT+TGG | 0.390861 | 4.3:+76430250 | MS.gene066714:CDS |
| TTCCATAATTCTTGTAAAGA+AGG | 0.391744 | 4.3:-76429769 | None:intergenic |
| TGACTTTGGCAGGATTCCAC+TGG | 0.399710 | 4.3:-76430458 | None:intergenic |
| GGCAGGATTCCACTGGGATT+CGG | 0.404652 | 4.3:-76430451 | None:intergenic |
| AAACAATTGGTGACTTTGGC+AGG | 0.412040 | 4.3:-76430468 | None:intergenic |
| GTATTGCCTCAGGTAGGTTA+TGG | 0.426317 | 4.3:-76431020 | None:intergenic |
| TTATCAATCACCAATCGTTC+TGG | 0.428300 | 4.3:+76428787 | MS.gene066714:CDS |
| ATCAGAAAATGCCATTCAAT+TGG | 0.440833 | 4.3:+76430498 | MS.gene066714:CDS |
| GAGACAACAGTAACTGCTTA+AGG | 0.446956 | 4.3:+76431102 | MS.gene066714:CDS |
| TCTGGTTTCAAGTTCTCATA+AGG | 0.450135 | 4.3:-76430047 | None:intergenic |
| TCTGATGGCTTGCAAACAAT+TGG | 0.450841 | 4.3:-76430481 | None:intergenic |
| TGAAATACTTACCGAAAAGA+AGG | 0.457446 | 4.3:-76429436 | None:intergenic |
| AGAACGATTGGTGATTGATA+AGG | 0.459665 | 4.3:-76428785 | None:intergenic |
| GAGACAATGCTCCTGTGGAT+TGG | 0.472943 | 4.3:-76430319 | None:intergenic |
| GAACGATTGGTGATTGATAA+GGG | 0.476873 | 4.3:-76428784 | None:intergenic |
| ACTTTGTATCCACTCAGCTC+TGG | 0.480156 | 4.3:+76429550 | MS.gene066714:CDS |
| TTACAGTTCTATGTGGGTCA+AGG | 0.487086 | 4.3:-76430537 | None:intergenic |
| GACTTTGGCAGGATTCCACT+GGG | 0.488788 | 4.3:-76430457 | None:intergenic |
| TCCATAATTCTTGTAAAGAA+GGG | 0.493278 | 4.3:-76429768 | None:intergenic |
| TTGCAAACAATTGGTGACTT+TGG | 0.496086 | 4.3:-76430472 | None:intergenic |
| GGCACACCACAGAGAGTTCA+AGG | 0.504267 | 4.3:+76430973 | MS.gene066714:CDS |
| AAGTCAGCCTCCCATAGATC+AGG | 0.505327 | 4.3:-76431042 | None:intergenic |
| AATTATGGAACAACTCTAGC+AGG | 0.515956 | 4.3:+76429782 | MS.gene066714:CDS |
| TACATTGATCACAGACTACA+TGG | 0.516097 | 4.3:+76429700 | MS.gene066714:intron |
| CATAGATCAGGTATTGCCTC+AGG | 0.516288 | 4.3:-76431030 | None:intergenic |
| TTACAAGTTTCCTATAGGGC+AGG | 0.519783 | 4.3:-76430097 | None:intergenic |
| TTGACTATGATGAACTTCAC+AGG | 0.524310 | 4.3:+76429917 | MS.gene066714:CDS |
| CATTAGCTTACCAGAACGAT+TGG | 0.533956 | 4.3:-76428797 | None:intergenic |
| AGTTCTATGTGGGTCAAGGT+TGG | 0.539209 | 4.3:-76430533 | None:intergenic |
| TGAGGCAATACCTGATCTAT+GGG | 0.540080 | 4.3:+76431032 | MS.gene066714:CDS |
| AAGTCAGAAGTTATGTACAC+TGG | 0.544272 | 4.3:+76431066 | MS.gene066714:CDS |
| TCAAGGTGCAGATTATGCAT+TGG | 0.546977 | 4.3:+76430990 | MS.gene066714:CDS |
| ATAAGGGCATAGAAGAAGAG+AGG | 0.554219 | 4.3:-76428768 | None:intergenic |
| AGTGGGACTCGACACTGTGC+TGG | 0.555191 | 4.3:+76430693 | MS.gene066714:CDS |
| GAGGAAAGATGATGTTTGCA+TGG | 0.563909 | 4.3:-76428749 | None:intergenic |
| TGGGATTCGGCTGAGCAAGA+TGG | 0.580421 | 4.3:-76430438 | None:intergenic |
| AGACTCTTAATCCAATCCAC+AGG | 0.582574 | 4.3:+76430308 | MS.gene066714:CDS |
| CATCTGAGACAATGCTCCTG+TGG | 0.586854 | 4.3:-76430324 | None:intergenic |
| AGTGTCCGCAACATACAAGC+TGG | 0.586963 | 4.3:+76430664 | MS.gene066714:CDS |
| AGTCAGAAGTTATGTACACT+GGG | 0.610600 | 4.3:+76431067 | MS.gene066714:CDS |
| CATACAAGCTGGAAAACAAG+TGG | 0.628481 | 4.3:+76430675 | MS.gene066714:CDS |
| GGCAATACCTGATCTATGGG+AGG | 0.662711 | 4.3:+76431035 | MS.gene066714:CDS |
| ATACAAGCTGGAAAACAAGT+GGG | 0.683793 | 4.3:+76430676 | MS.gene066714:CDS |
| TCTGCAAGACCAGAGCTGAG+TGG | 0.683994 | 4.3:-76429559 | None:intergenic |
| CTTGCTCAGCCGAATCCCAG+TGG | 0.684389 | 4.3:+76430442 | MS.gene066714:CDS |
| TTACTGTTGTCTCTACAGCA+AGG | 0.685440 | 4.3:-76431092 | None:intergenic |
| TCTGCACCTTGAACTCTCTG+TGG | 0.705341 | 4.3:-76430979 | None:intergenic |
| GATCAGGTATTGCCTCAGGT+AGG | 0.713314 | 4.3:-76431026 | None:intergenic |
| AAGCATCCATAACCTACCTG+AGG | 0.713962 | 4.3:+76431014 | MS.gene066714:CDS |
| ATTGATCACAGACTACATGG+AGG | 0.792447 | 4.3:+76429703 | MS.gene066714:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATGATATATATGCAT+GGG | - | chr4.3:76428839-76428858 | None:intergenic | 15.0% |
| !! | AAAATGGAATCAATATAATA+AGG | + | chr4.3:76430133-76430152 | MS.gene066714:intron | 15.0% |
| !! | AAATCAAATGATAATTACAA+TGG | - | chr4.3:76428874-76428893 | None:intergenic | 15.0% |
| !! | TAAAAAATGATATATATGCA+TGG | - | chr4.3:76428840-76428859 | None:intergenic | 15.0% |
| !! | TTTAAAAAGTTCATGATAAT+TGG | - | chr4.3:76428964-76428983 | None:intergenic | 15.0% |
| !!! | TTATTATATTGATTCCATTT+TGG | - | chr4.3:76430134-76430153 | None:intergenic | 15.0% |
| !!! | TTATTTTTTCATTTCTATTC+AGG | + | chr4.3:76429879-76429898 | MS.gene066714:intron | 15.0% |
| !! | TAACAAAGATAGATCATAAA+GGG | - | chr4.3:76430571-76430590 | None:intergenic | 20.0% |
| !! | TAAGTTGTTTATAACCAAAA+TGG | + | chr4.3:76430117-76430136 | MS.gene066714:intron | 20.0% |
| !! | TATAATAAGGTTAGAAAAGA+TGG | + | chr4.3:76430146-76430165 | MS.gene066714:intron | 20.0% |
| !!! | ATTTGATTTTCAATCTTCAT+TGG | + | chr4.3:76428885-76428904 | MS.gene066714:intron | 20.0% |
| !!! | TGTTGTTTATTCTATGTAAA+AGG | + | chr4.3:76429356-76429375 | MS.gene066714:intron | 20.0% |
| !!! | TTATTCTCAACATTTTTTCA+TGG | - | chr4.3:76429251-76429270 | None:intergenic | 20.0% |
| !!! | TTTTATATTTTCCTGTGAAA+TGG | + | chr4.3:76429818-76429837 | MS.gene066714:intron | 20.0% |
| ! | ACTATATCACTACTGTTTAT+AGG | - | chr4.3:76430778-76430797 | None:intergenic | 25.0% |
| ! | GTAACAAAGATAGATCATAA+AGG | - | chr4.3:76430572-76430591 | None:intergenic | 25.0% |
| ! | TAAAGCGTAGTACAAATATT+TGG | + | chr4.3:76429191-76429210 | MS.gene066714:intron | 25.0% |
| ! | TATGAAATGTTGTCAAATAG+CGG | - | chr4.3:76430802-76430821 | None:intergenic | 25.0% |
| ! | TCCATAATTCTTGTAAAGAA+GGG | - | chr4.3:76429771-76429790 | None:intergenic | 25.0% |
| ! | TTCCATAATTCTTGTAAAGA+AGG | - | chr4.3:76429772-76429791 | None:intergenic | 25.0% |
| !! | AAAAGAAGGCAATCATATTT+TGG | - | chr4.3:76429425-76429444 | None:intergenic | 25.0% |
| !! | AAATATGATTGCCTTCTTTT+CGG | + | chr4.3:76429425-76429444 | MS.gene066714:CDS | 25.0% |
| !! | AATTCAGTGATCATTTTACA+TGG | - | chr4.3:76429997-76430016 | None:intergenic | 25.0% |
| !! | ATTTTCTTACAGTTCTATGT+GGG | - | chr4.3:76430546-76430565 | None:intergenic | 25.0% |
| !! | CAAGTAATTTTTATGAGTTG+TGG | - | chr4.3:76430933-76430952 | None:intergenic | 25.0% |
| !! | CATAAATCATCAGATTTTCT+TGG | - | chr4.3:76429746-76429765 | None:intergenic | 25.0% |
| !! | GATACTTTTAGTAACATGAA+TGG | + | chr4.3:76429677-76429696 | MS.gene066714:intron | 25.0% |
| !! | TGAAGATGAGAATTTCATTT+TGG | - | chr4.3:76429482-76429501 | None:intergenic | 25.0% |
| AAAAGGTTCTCTTAGCAAAA+TGG | + | chr4.3:76429373-76429392 | MS.gene066714:intron | 30.0% | |
| AAACGTAAATTCCATTTCAC+AGG | - | chr4.3:76429832-76429851 | None:intergenic | 30.0% | |
| AAATCTGCAGAACAATATCA+TGG | - | chr4.3:76429523-76429542 | None:intergenic | 30.0% | |
| AAGAACAACTGAAAATGACA+TGG | - | chr4.3:76430637-76430656 | None:intergenic | 30.0% | |
| ACAACTTACAAGTTTCCTAT+AGG | - | chr4.3:76430105-76430124 | None:intergenic | 30.0% | |
| ACCCTTCTTTACAAGAATTA+TGG | + | chr4.3:76429767-76429786 | MS.gene066714:CDS | 30.0% | |
| AGCAAATTAAAACCTAGTCA+TGG | - | chr4.3:76429112-76429131 | None:intergenic | 30.0% | |
| ATCAGAAAATGCCATTCAAT+TGG | + | chr4.3:76430498-76430517 | MS.gene066714:CDS | 30.0% | |
| CAACTTACAAGTTTCCTATA+GGG | - | chr4.3:76430104-76430123 | None:intergenic | 30.0% | |
| CTAGCAGTTTATTTAAACAG+CGG | - | chr4.3:76430888-76430907 | None:intergenic | 30.0% | |
| CTGCAACAAAAGTTATGTTA+TGG | - | chr4.3:76429226-76429245 | None:intergenic | 30.0% | |
| CTTAAGACACTAAACATACT+TGG | + | chr4.3:76430250-76430269 | MS.gene066714:CDS | 30.0% | |
| TGAAATACTTACCGAAAAGA+AGG | - | chr4.3:76429439-76429458 | None:intergenic | 30.0% | |
| TTCATTTCTATTCAGGCAAT+TGG | + | chr4.3:76429886-76429905 | MS.gene066714:intron | 30.0% | |
| ! | AATTGAATGGCATTTTCTGA+TGG | - | chr4.3:76430499-76430518 | None:intergenic | 30.0% |
| ! | ATCAACATTTTCCTTAGAAC+TGG | - | chr4.3:76430074-76430093 | None:intergenic | 30.0% |
| ! | GATTTTCTTACAGTTCTATG+TGG | - | chr4.3:76430547-76430566 | None:intergenic | 30.0% |
| ! | GCATGTCGACAAAATTTTAA+AGG | + | chr4.3:76429583-76429602 | MS.gene066714:CDS | 30.0% |
| ! | TCAACATTTTCCTTAGAACT+GGG | - | chr4.3:76430073-76430092 | None:intergenic | 30.0% |
| ! | TCATTTTCAGTTGTTCTTTG+AGG | + | chr4.3:76430639-76430658 | MS.gene066714:intron | 30.0% |
| !! | AACAAAAGAAGCATTAGTAG+TGG | - | chr4.3:76430189-76430208 | None:intergenic | 30.0% |
| !! | TATTTTGAGAGCCAATTGAA+TGG | - | chr4.3:76430512-76430531 | None:intergenic | 30.0% |
| !!! | AGGCAATCATATTTTGGTTT+TGG | - | chr4.3:76429419-76429438 | None:intergenic | 30.0% |
| AACAACTCTAGCAGGATTAA+AGG | + | chr4.3:76429790-76429809 | MS.gene066714:CDS | 35.0% | |
| AAGTCAGAAGTTATGTACAC+TGG | + | chr4.3:76431066-76431085 | MS.gene066714:CDS | 35.0% | |
| AATTATGGAACAACTCTAGC+AGG | + | chr4.3:76429782-76429801 | MS.gene066714:CDS | 35.0% | |
| AGTCAGAAGTTATGTACACT+GGG | + | chr4.3:76431067-76431086 | MS.gene066714:CDS | 35.0% | |
| ATACAAGCTGGAAAACAAGT+GGG | + | chr4.3:76430676-76430695 | MS.gene066714:CDS | 35.0% | |
| ATGAGTTGTGGCTCATTAAA+AGG | - | chr4.3:76430921-76430940 | None:intergenic | 35.0% | |
| CTAAAATCTTGACCATGACT+AGG | + | chr4.3:76429097-76429116 | MS.gene066714:intron | 35.0% | |
| GATGATGACATTGAGTTTCT+AGG | + | chr4.3:76430349-76430368 | MS.gene066714:CDS | 35.0% | |
| GGATTAGAAGATTGCTTTGA+AGG | + | chr4.3:76430271-76430290 | MS.gene066714:CDS | 35.0% | |
| GTTATAGAGCTATTACGTAG+TGG | - | chr4.3:76430866-76430885 | None:intergenic | 35.0% | |
| TACATTGATCACAGACTACA+TGG | + | chr4.3:76429700-76429719 | MS.gene066714:intron | 35.0% | |
| TATTAAAAGTCACGACGCAA+CGG | + | chr4.3:76429070-76429089 | MS.gene066714:intron | 35.0% | |
| TTATCAATCACCAATCGTTC+TGG | + | chr4.3:76428787-76428806 | MS.gene066714:CDS | 35.0% | |
| TTGACTATGATGAACTTCAC+AGG | + | chr4.3:76429917-76429936 | MS.gene066714:CDS | 35.0% | |
| ! | AGAACGATTGGTGATTGATA+AGG | - | chr4.3:76428788-76428807 | None:intergenic | 35.0% |
| ! | CTAGTCATGGTCAAGATTTT+AGG | - | chr4.3:76429099-76429118 | None:intergenic | 35.0% |
| ! | GAACGATTGGTGATTGATAA+GGG | - | chr4.3:76428787-76428806 | None:intergenic | 35.0% |
| ! | TTGCAAACAATTGGTGACTT+TGG | - | chr4.3:76430475-76430494 | None:intergenic | 35.0% |
| ! | TTGCTTGCTTAGTTCTTCAT+TGG | + | chr4.3:76430609-76430628 | MS.gene066714:intron | 35.0% |
| !! | CATTGGCTTCATGATAATTG+AGG | + | chr4.3:76428902-76428921 | MS.gene066714:intron | 35.0% |
| !! | TCTGGTTTCAAGTTCTCATA+AGG | - | chr4.3:76430050-76430069 | None:intergenic | 35.0% |
| !!! | ATTTTGGTTTTGGTGTGAAG+AGG | - | chr4.3:76429409-76429428 | None:intergenic | 35.0% |
| AGACTCTTAATCCAATCCAC+AGG | + | chr4.3:76430308-76430327 | MS.gene066714:CDS | 40.0% | |
| ATTGATCACAGACTACATGG+AGG | + | chr4.3:76429703-76429722 | MS.gene066714:intron | 40.0% | |
| CAATCGTTCTGGTAAGCTAA+TGG | + | chr4.3:76428798-76428817 | MS.gene066714:intron | 40.0% | |
| CATACAAGCTGGAAAACAAG+TGG | + | chr4.3:76430675-76430694 | MS.gene066714:CDS | 40.0% | |
| CTCACTCTCAAACTGCTAAA+GGG | + | chr4.3:76429958-76429977 | MS.gene066714:intron | 40.0% | |
| TCAAGGTGCAGATTATGCAT+TGG | + | chr4.3:76430990-76431009 | MS.gene066714:CDS | 40.0% | |
| TCTCACTCTCAAACTGCTAA+AGG | + | chr4.3:76429957-76429976 | MS.gene066714:intron | 40.0% | |
| TGAGGCAATACCTGATCTAT+GGG | + | chr4.3:76431032-76431051 | MS.gene066714:CDS | 40.0% | |
| TTACAAGTTTCCTATAGGGC+AGG | - | chr4.3:76430100-76430119 | None:intergenic | 40.0% | |
| TTACAGTTCTATGTGGGTCA+AGG | - | chr4.3:76430540-76430559 | None:intergenic | 40.0% | |
| TTACTGTTGTCTCTACAGCA+AGG | - | chr4.3:76431095-76431114 | None:intergenic | 40.0% | |
| TTGCAGCATAGTCACAATCT+TGG | - | chr4.3:76428993-76429012 | None:intergenic | 40.0% | |
| ! | AAACAATTGGTGACTTTGGC+AGG | - | chr4.3:76430471-76430490 | None:intergenic | 40.0% |
| ! | ATAAGGGCATAGAAGAAGAG+AGG | - | chr4.3:76428771-76428790 | None:intergenic | 40.0% |
| ! | ATTTTCCTTAGAACTGGGTC+TGG | - | chr4.3:76430068-76430087 | None:intergenic | 40.0% |
| ! | CATTAGCTTACCAGAACGAT+TGG | - | chr4.3:76428800-76428819 | None:intergenic | 40.0% |
| ! | GTTTTCCAGCTTGTATGTTG+CGG | - | chr4.3:76430672-76430691 | None:intergenic | 40.0% |
| ! | TCTGATGGCTTGCAAACAAT+TGG | - | chr4.3:76430484-76430503 | None:intergenic | 40.0% |
| !!! | CTCCTTGCAGTTTTGTTCAT+GGG | + | chr4.3:76430018-76430037 | MS.gene066714:intron | 40.0% |
| !!! | TCTCCTTGCAGTTTTGTTCA+TGG | + | chr4.3:76430017-76430036 | MS.gene066714:intron | 40.0% |
| AAGCATCCATAACCTACCTG+AGG | + | chr4.3:76431014-76431033 | MS.gene066714:CDS | 45.0% | |
| ACTTTGTATCCACTCAGCTC+TGG | + | chr4.3:76429550-76429569 | MS.gene066714:CDS | 45.0% | |
| AGTTCTATGTGGGTCAAGGT+TGG | - | chr4.3:76430536-76430555 | None:intergenic | 45.0% | |
| CTCCCATGAACAAAACTGCA+AGG | - | chr4.3:76430023-76430042 | None:intergenic | 45.0% | |
| CTGAGGCAATACCTGATCTA+TGG | + | chr4.3:76431031-76431050 | MS.gene066714:CDS | 45.0% | |
| CTGCTTGCACTACTACTTGT+TGG | - | chr4.3:76430394-76430413 | None:intergenic | 45.0% | |
| GTATTGCCTCAGGTAGGTTA+TGG | - | chr4.3:76431023-76431042 | None:intergenic | 45.0% | |
| GTTGATTGCACCATCCAGAT+TGG | + | chr4.3:76430952-76430971 | MS.gene066714:intron | 45.0% | |
| TGAAACCAGACCCAGTTCTA+AGG | + | chr4.3:76430060-76430079 | MS.gene066714:CDS | 45.0% | |
| ! | ACACTGTGCTGGTAAGTCAT+TGG | + | chr4.3:76430704-76430723 | MS.gene066714:intron | 45.0% |
| ! | CATAGATCAGGTATTGCCTC+AGG | - | chr4.3:76431033-76431052 | None:intergenic | 45.0% |
| AAGTCAGCCTCCCATAGATC+AGG | - | chr4.3:76431045-76431064 | None:intergenic | 50.0% | |
| AGTGTCCGCAACATACAAGC+TGG | + | chr4.3:76430664-76430683 | MS.gene066714:CDS | 50.0% | |
| GACTTTGGCAGGATTCCACT+GGG | - | chr4.3:76430460-76430479 | None:intergenic | 50.0% | |
| GAGACAATGCTCCTGTGGAT+TGG | - | chr4.3:76430322-76430341 | None:intergenic | 50.0% | |
| GGCAATACCTGATCTATGGG+AGG | + | chr4.3:76431035-76431054 | MS.gene066714:CDS | 50.0% | |
| GTGACTATGCTGCAATGTCG+AGG | + | chr4.3:76428998-76429017 | MS.gene066714:intron | 50.0% | |
| TCTGCACCTTGAACTCTCTG+TGG | - | chr4.3:76430982-76431001 | None:intergenic | 50.0% | |
| TGACTTTGGCAGGATTCCAC+TGG | - | chr4.3:76430461-76430480 | None:intergenic | 50.0% | |
| ! | CATCTGAGACAATGCTCCTG+TGG | - | chr4.3:76430327-76430346 | None:intergenic | 50.0% |
| ! | GATCAGGTATTGCCTCAGGT+AGG | - | chr4.3:76431029-76431048 | None:intergenic | 50.0% |
| ! | TGTTGATGAGCCTGCCCTAT+AGG | + | chr4.3:76430087-76430106 | MS.gene066714:CDS | 50.0% |
| CTCTCTGTGGTGTGCCAATC+TGG | - | chr4.3:76430969-76430988 | None:intergenic | 55.0% | |
| CTGTGGTGTGCCAATCTGGA+TGG | - | chr4.3:76430965-76430984 | None:intergenic | 55.0% | |
| GGCACACCACAGAGAGTTCA+AGG | + | chr4.3:76430973-76430992 | MS.gene066714:CDS | 55.0% | |
| GGCAGGATTCCACTGGGATT+CGG | - | chr4.3:76430454-76430473 | None:intergenic | 55.0% | |
| TCTGCAAGACCAGAGCTGAG+TGG | - | chr4.3:76429562-76429581 | None:intergenic | 55.0% | |
| TGGGATTCGGCTGAGCAAGA+TGG | - | chr4.3:76430441-76430460 | None:intergenic | 55.0% | |
| AGTGGGACTCGACACTGTGC+TGG | + | chr4.3:76430693-76430712 | MS.gene066714:CDS | 60.0% | |
| CTTGCTCAGCCGAATCCCAG+TGG | + | chr4.3:76430442-76430461 | MS.gene066714:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 76428751 | 76431122 | 76428751 | ID=MS.gene066714 |
| chr4.3 | mRNA | 76428751 | 76431122 | 76428751 | ID=MS.gene066714.t1;Parent=MS.gene066714 |
| chr4.3 | exon | 76428751 | 76428808 | 76428751 | ID=MS.gene066714.t1.exon1;Parent=MS.gene066714.t1 |
| chr4.3 | CDS | 76428751 | 76428808 | 76428751 | ID=cds.MS.gene066714.t1;Parent=MS.gene066714.t1 |
| chr4.3 | exon | 76429378 | 76429446 | 76429378 | ID=MS.gene066714.t1.exon2;Parent=MS.gene066714.t1 |
| chr4.3 | CDS | 76429378 | 76429446 | 76429378 | ID=cds.MS.gene066714.t1;Parent=MS.gene066714.t1 |
| chr4.3 | exon | 76429539 | 76429604 | 76429539 | ID=MS.gene066714.t1.exon3;Parent=MS.gene066714.t1 |
| chr4.3 | CDS | 76429539 | 76429604 | 76429539 | ID=cds.MS.gene066714.t1;Parent=MS.gene066714.t1 |
| chr4.3 | exon | 76429714 | 76429811 | 76429714 | ID=MS.gene066714.t1.exon4;Parent=MS.gene066714.t1 |
| chr4.3 | CDS | 76429714 | 76429811 | 76429714 | ID=cds.MS.gene066714.t1;Parent=MS.gene066714.t1 |
| chr4.3 | exon | 76429901 | 76429938 | 76429901 | ID=MS.gene066714.t1.exon5;Parent=MS.gene066714.t1 |
| chr4.3 | CDS | 76429901 | 76429938 | 76429901 | ID=cds.MS.gene066714.t1;Parent=MS.gene066714.t1 |
| chr4.3 | exon | 76430028 | 76430115 | 76430028 | ID=MS.gene066714.t1.exon6;Parent=MS.gene066714.t1 |
| chr4.3 | CDS | 76430028 | 76430115 | 76430028 | ID=cds.MS.gene066714.t1;Parent=MS.gene066714.t1 |
| chr4.3 | exon | 76430220 | 76430555 | 76430220 | ID=MS.gene066714.t1.exon7;Parent=MS.gene066714.t1 |
| chr4.3 | CDS | 76430220 | 76430555 | 76430220 | ID=cds.MS.gene066714.t1;Parent=MS.gene066714.t1 |
| chr4.3 | exon | 76430649 | 76430714 | 76430649 | ID=MS.gene066714.t1.exon8;Parent=MS.gene066714.t1 |
| chr4.3 | CDS | 76430649 | 76430714 | 76430649 | ID=cds.MS.gene066714.t1;Parent=MS.gene066714.t1 |
| chr4.3 | exon | 76430970 | 76431122 | 76430970 | ID=MS.gene066714.t1.exon9;Parent=MS.gene066714.t1 |
| chr4.3 | CDS | 76430970 | 76431122 | 76430970 | ID=cds.MS.gene066714.t1;Parent=MS.gene066714.t1 |
| Gene Sequence |
| Protein sequence |
