Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006477.t1 | AFK41981.1 | 97.3 | 224 | 6 | 0 | 1 | 224 | 41 | 264 | 6.10E-119 | 436.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006477.t1 | P53078 | 29.5 | 176 | 104 | 7 | 7 | 175 | 92 | 254 | 5.2e-10 | 66.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006477.t1 | B7FKK9 | 97.3 | 224 | 6 | 0 | 1 | 224 | 41 | 264 | 4.4e-119 | 436.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066714 | MS.gene006477 | PPI |
| MS.gene006477 | MS.gene46174 | PPI |
| MS.gene006477 | MS.gene50434 | PPI |
| MS.gene96863 | MS.gene006477 | PPI |
| MS.gene87483 | MS.gene006477 | PPI |
| MS.gene006477 | MS.gene99621 | PPI |
| MS.gene006477 | MS.gene78803 | PPI |
| MS.gene006477 | MS.gene055276 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006477.t1 | MTR_1g104610 | 97.321 | 224 | 6 | 0 | 1 | 224 | 41 | 264 | 2.75e-162 | 449 |
| MS.gene006477.t1 | MTR_1g104610 | 92.135 | 178 | 14 | 0 | 1 | 178 | 41 | 218 | 1.35e-116 | 332 |
| MS.gene006477.t1 | MTR_4g021800 | 45.494 | 233 | 86 | 2 | 1 | 194 | 2 | 232 | 5.27e-65 | 202 |
| MS.gene006477.t1 | MTR_4g021800 | 45.494 | 233 | 86 | 2 | 1 | 194 | 47 | 277 | 1.30e-64 | 202 |
| MS.gene006477.t1 | MTR_7g062150 | 44.167 | 240 | 90 | 2 | 1 | 198 | 46 | 283 | 1.44e-64 | 202 |
| MS.gene006477.t1 | MTR_1g085570 | 47.549 | 204 | 97 | 4 | 1 | 204 | 43 | 236 | 5.97e-64 | 199 |
| MS.gene006477.t1 | MTR_1g085570 | 47.549 | 204 | 97 | 4 | 1 | 204 | 42 | 235 | 6.25e-64 | 199 |
| MS.gene006477.t1 | MTR_1g085570 | 47.549 | 204 | 97 | 4 | 1 | 204 | 50 | 243 | 6.48e-64 | 199 |
| MS.gene006477.t1 | MTR_1g085570 | 53.333 | 165 | 71 | 2 | 1 | 165 | 42 | 200 | 9.37e-60 | 187 |
| MS.gene006477.t1 | MTR_4g021825 | 43.421 | 228 | 84 | 3 | 10 | 194 | 77 | 302 | 6.89e-58 | 186 |
| MS.gene006477.t1 | MTR_4g064380 | 42.396 | 217 | 100 | 4 | 1 | 194 | 46 | 260 | 7.81e-57 | 182 |
| MS.gene006477.t1 | MTR_2g097520 | 40.909 | 242 | 105 | 5 | 1 | 206 | 45 | 284 | 1.27e-56 | 182 |
| MS.gene006477.t1 | MTR_4g021800 | 43.956 | 182 | 63 | 1 | 1 | 143 | 47 | 228 | 6.68e-46 | 152 |
| MS.gene006477.t1 | MTR_7g062150 | 43.243 | 185 | 63 | 1 | 1 | 143 | 46 | 230 | 1.63e-45 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006477.t1 | AT2G32150 | 58.696 | 230 | 86 | 4 | 1 | 224 | 37 | 263 | 7.13e-91 | 268 |
| MS.gene006477.t1 | AT2G32150 | 68.072 | 166 | 52 | 1 | 1 | 165 | 37 | 202 | 1.34e-79 | 238 |
| MS.gene006477.t1 | AT2G32150 | 68.750 | 144 | 44 | 1 | 1 | 143 | 37 | 180 | 1.28e-68 | 209 |
| MS.gene006477.t1 | AT3G62040 | 48.058 | 206 | 96 | 4 | 1 | 205 | 2 | 197 | 7.06e-66 | 202 |
| MS.gene006477.t1 | AT5G02230 | 48.372 | 215 | 89 | 2 | 2 | 196 | 47 | 259 | 6.05e-60 | 190 |
| MS.gene006477.t1 | AT5G02230 | 48.372 | 215 | 89 | 2 | 2 | 196 | 47 | 259 | 6.05e-60 | 190 |
| MS.gene006477.t1 | AT5G02230 | 48.372 | 215 | 89 | 2 | 2 | 196 | 84 | 296 | 2.19e-59 | 189 |
| MS.gene006477.t1 | AT5G59480 | 42.152 | 223 | 103 | 6 | 1 | 200 | 46 | 265 | 2.89e-55 | 178 |
| MS.gene006477.t1 | AT5G59480 | 42.152 | 223 | 103 | 6 | 1 | 200 | 46 | 265 | 2.89e-55 | 178 |
| MS.gene006477.t1 | AT5G59480 | 42.152 | 223 | 103 | 6 | 1 | 200 | 46 | 265 | 2.89e-55 | 178 |
| MS.gene006477.t1 | AT5G59480 | 42.152 | 223 | 103 | 6 | 1 | 200 | 46 | 265 | 2.89e-55 | 178 |
| MS.gene006477.t1 | AT5G59490 | 45.098 | 204 | 104 | 2 | 1 | 198 | 42 | 243 | 4.93e-54 | 174 |
| MS.gene006477.t1 | AT5G59480 | 42.152 | 223 | 102 | 7 | 1 | 200 | 46 | 264 | 4.29e-53 | 172 |
| MS.gene006477.t1 | AT5G59490 | 48.538 | 171 | 82 | 1 | 1 | 165 | 42 | 212 | 7.80e-47 | 154 |
Find 62 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGTCGGGGCGGGTTGAATT+AGG | 0.220477 | 1.2:-77553216 | None:intergenic |
| CAGAAGTGATTCCTGAAATA+TGG | 0.228599 | 1.2:+77554085 | MS.gene006477:CDS |
| AACTCTGAGGGTGGAAGCTT+TGG | 0.284733 | 1.2:-77552616 | None:intergenic |
| CGGGTTGAATTAGGTAGATT+TGG | 0.291979 | 1.2:-77553207 | None:intergenic |
| ACTCTACTTCCCCATATTTC+AGG | 0.304394 | 1.2:-77554096 | None:intergenic |
| TACAATCTTCCTTTGGTTGA+TGG | 0.306805 | 1.2:-77552993 | None:intergenic |
| TTGTTAGATATTTACGAATT+CGG | 0.336620 | 1.2:+77553101 | MS.gene006477:intron |
| AATGGGTCTCCACACTGTTT+TGG | 0.343608 | 1.2:+77553794 | MS.gene006477:CDS |
| CATCATTGCGGGTAAAGAAA+TGG | 0.374288 | 1.2:+77553776 | MS.gene006477:CDS |
| GGGTTGAATTAGGTAGATTT+GGG | 0.378726 | 1.2:-77553206 | None:intergenic |
| AGGTTCCTTAACTGAATGTC+TGG | 0.381562 | 1.2:-77552962 | None:intergenic |
| ATCGCGCACAAACAGCGAAT+TGG | 0.385299 | 1.2:+77554140 | MS.gene006477:CDS |
| TCCCACGGTAGCACCCTTGC+CGG | 0.428799 | 1.2:+77552651 | MS.gene006477:CDS |
| TTACAGCGTTGGACAGGCTT+GGG | 0.429999 | 1.2:+77553139 | MS.gene006477:CDS |
| AAGAGGACAGGGAATTCGTC+GGG | 0.430210 | 1.2:-77553231 | None:intergenic |
| ATGGACATACAATCTTCCTT+TGG | 0.430892 | 1.2:-77553000 | None:intergenic |
| AGAAGTGATTCCTGAAATAT+GGG | 0.441987 | 1.2:+77554086 | MS.gene006477:CDS |
| TTTGGTTGATGGAACGTAAG+AGG | 0.450307 | 1.2:-77552982 | None:intergenic |
| GACAGGGAATTCGTCGGGGC+GGG | 0.456541 | 1.2:-77553226 | None:intergenic |
| TAGTGCGCGCAAACCGGCAA+GGG | 0.457452 | 1.2:-77552664 | None:intergenic |
| AACGAAGGTTTCAAGAGGAC+AGG | 0.466936 | 1.2:-77553243 | None:intergenic |
| ATCATTGCGGGTAAAGAAAT+GGG | 0.472132 | 1.2:+77553777 | MS.gene006477:CDS |
| CTTACAGCGTTGGACAGGCT+TGG | 0.474275 | 1.2:+77553138 | MS.gene006477:CDS |
| AGTGTTCGAAACATCATTGC+GGG | 0.477359 | 1.2:+77553765 | MS.gene006477:CDS |
| TCAAACCAGACATTCAGTTA+AGG | 0.484093 | 1.2:+77552957 | MS.gene006477:CDS |
| CTAAGCGCATATACTGCTGT+TGG | 0.493343 | 1.2:+77554171 | MS.gene006477:CDS |
| CTTGCCGGTTTGCGCGCACT+AGG | 0.496427 | 1.2:+77552666 | MS.gene006477:CDS |
| TTCTTAGTTTCGTGCACGGA+AGG | 0.502187 | 1.2:+77552918 | MS.gene006477:intron |
| TGTCCTCTTGAAACCTTCGT+TGG | 0.512254 | 1.2:+77553245 | MS.gene006477:CDS |
| GAGGATCCACGTTGGCAGCT+TGG | 0.514928 | 1.2:-77553287 | None:intergenic |
| ATGCACTTACAGCGTTGGAC+AGG | 0.521461 | 1.2:+77553133 | MS.gene006477:CDS |
| ATAGCCTAGTGCGCGCAAAC+CGG | 0.536055 | 1.2:-77552670 | None:intergenic |
| GATTCATGCACTTACAGCGT+TGG | 0.537491 | 1.2:+77553128 | MS.gene006477:CDS |
| AGCTTGGATCGCAATCTTGA+AGG | 0.539852 | 1.2:-77553271 | None:intergenic |
| AGATATTTACGAATTCGGAC+AGG | 0.548364 | 1.2:+77553106 | MS.gene006477:intron |
| CAACGTGGATCCTCGTCGTA+CGG | 0.560427 | 1.2:+77553296 | MS.gene006477:CDS |
| TGAAATATGGGGAAGTAGAG+TGG | 0.562799 | 1.2:+77554098 | MS.gene006477:CDS |
| AACCGGCAAGGGTGCTACCG+TGG | 0.563938 | 1.2:-77552653 | None:intergenic |
| TCTGGTTTGATTAATTCGTA+AGG | 0.564418 | 1.2:-77552944 | None:intergenic |
| CTAGTGCGCGCAAACCGGCA+AGG | 0.567139 | 1.2:-77552665 | None:intergenic |
| CAAGAGGACAGGGAATTCGT+CGG | 0.575073 | 1.2:-77553232 | None:intergenic |
| CAATGTAGGGGACTATGTAG+TGG | 0.578865 | 1.2:+77554038 | MS.gene006477:CDS |
| TTTAAAGAGTTCAACTCTGA+GGG | 0.583777 | 1.2:-77552628 | None:intergenic |
| ACCGGCAAGGGTGCTACCGT+GGG | 0.588555 | 1.2:-77552652 | None:intergenic |
| GTTGAACTCTTTAAATCCCA+CGG | 0.595556 | 1.2:+77552636 | MS.gene006477:CDS |
| GTTCTTCTTAGTTTCGTGCA+CGG | 0.597143 | 1.2:+77552914 | MS.gene006477:intron |
| TTACCTGTGGTATTCTTCTG+CGG | 0.597503 | 1.2:-77552700 | None:intergenic |
| AAAGAGTTCAACTCTGAGGG+TGG | 0.612715 | 1.2:-77552625 | None:intergenic |
| GGACAGGGAATTCGTCGGGG+CGG | 0.619508 | 1.2:-77553227 | None:intergenic |
| ATCTTGAAGGCATCCAACGA+AGG | 0.622873 | 1.2:-77553258 | None:intergenic |
| ATTTAAAGAGTTCAACTCTG+AGG | 0.633078 | 1.2:-77552629 | None:intergenic |
| ACGAAGGTTTCAAGAGGACA+GGG | 0.645747 | 1.2:-77553242 | None:intergenic |
| TCACCGCAGAAGAATACCAC+AGG | 0.655318 | 1.2:+77552697 | MS.gene006477:CDS |
| TGCGATCCAAGCTGCCAACG+TGG | 0.658698 | 1.2:+77553281 | MS.gene006477:CDS |
| CATCCAACGAAGGTTTCAAG+AGG | 0.662600 | 1.2:-77553248 | None:intergenic |
| AGTTGACTCACCGTACGACG+AGG | 0.671211 | 1.2:-77553306 | None:intergenic |
| TCTTACGTTCCATCAACCAA+AGG | 0.686021 | 1.2:+77552984 | MS.gene006477:CDS |
| AGAGGACAGGGAATTCGTCG+GGG | 0.686285 | 1.2:-77553230 | None:intergenic |
| CAGTGTTCGAAACATCATTG+CGG | 0.695527 | 1.2:+77553764 | MS.gene006477:CDS |
| GAAGTGATTCCTGAAATATG+GGG | 0.730085 | 1.2:+77554087 | MS.gene006477:CDS |
| GTAAAATTACCAAAACAGTG+TGG | 0.739988 | 1.2:-77553803 | None:intergenic |
| CGTACGACGAGGATCCACGT+TGG | 0.778989 | 1.2:-77553295 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTAAGATTAGAAAA+TGG | - | chr1.2:77553022-77553041 | None:intergenic | 10.0% |
| !! | TGTCAAATTCTTTATAATTA+TGG | + | chr1.2:77553478-77553497 | MS.gene006477:intron | 15.0% |
| !!! | CTTGAAATTACTATTATTTT+TGG | + | chr1.2:77553045-77553064 | MS.gene006477:intron | 15.0% |
| !!! | TTGGTATATATTTCTAATTT+TGG | + | chr1.2:77553064-77553083 | MS.gene006477:intron | 15.0% |
| !! | AGTTAATTGTTAGTTAACTT+TGG | + | chr1.2:77553565-77553584 | MS.gene006477:intron | 20.0% |
| !! | ATCATACATACTACTTAATT+TGG | - | chr1.2:77552879-77552898 | None:intergenic | 20.0% |
| !! | TTGTTAGATATTTACGAATT+CGG | + | chr1.2:77553101-77553120 | MS.gene006477:intron | 20.0% |
| !!! | TTATAATTATGGTGTTGATT+TGG | + | chr1.2:77553489-77553508 | MS.gene006477:intron | 20.0% |
| ! | GTATGTTTATGTGTTTATGT+AGG | + | chr1.2:77553996-77554015 | MS.gene006477:intron | 25.0% |
| ! | TTAAGTTTATGCCAAAATCT+CGG | - | chr1.2:77552804-77552823 | None:intergenic | 25.0% |
| ! | TTTATGTGTTTATGTAGGTT+GGG | + | chr1.2:77554001-77554020 | MS.gene006477:intron | 25.0% |
| !! | TTTGGAGTTGGATTAAATAA+TGG | + | chr1.2:77553583-77553602 | MS.gene006477:intron | 25.0% |
| AGAAGTGATTCCTGAAATAT+GGG | + | chr1.2:77554086-77554105 | MS.gene006477:CDS | 30.0% | |
| AGACAGTGAAAAACAATGTA+GGG | + | chr1.2:77554025-77554044 | MS.gene006477:CDS | 30.0% | |
| AGCAAACAAACGAACAAATT+AGG | - | chr1.2:77552731-77552750 | None:intergenic | 30.0% | |
| ATTTAAAGAGTTCAACTCTG+AGG | - | chr1.2:77552632-77552651 | None:intergenic | 30.0% | |
| GTAAAATTACCAAAACAGTG+TGG | - | chr1.2:77553806-77553825 | None:intergenic | 30.0% | |
| GTTTATGTGTTTATGTAGGT+TGG | + | chr1.2:77554000-77554019 | MS.gene006477:intron | 30.0% | |
| TCAATTAAATTAGTGCTGTC+TGG | - | chr1.2:77553932-77553951 | None:intergenic | 30.0% | |
| TGCGACTATAACTTCATAAA+AGG | - | chr1.2:77553657-77553676 | None:intergenic | 30.0% | |
| TTATGTGTTTATGTAGGTTG+GGG | + | chr1.2:77554002-77554021 | MS.gene006477:intron | 30.0% | |
| TTTAAAGAGTTCAACTCTGA+GGG | - | chr1.2:77552631-77552650 | None:intergenic | 30.0% | |
| ! | GAAAAAGAATTGAGTTGTTG+AGG | + | chr1.2:77553522-77553541 | MS.gene006477:intron | 30.0% |
| ! | TCTGGTTTGATTAATTCGTA+AGG | - | chr1.2:77552947-77552966 | None:intergenic | 30.0% |
| !! | TTGTTAGTTAACTTTGGAGT+TGG | + | chr1.2:77553571-77553590 | MS.gene006477:intron | 30.0% |
| !!! | TCTTGTTTTGCAGTTGTTTT+TGG | + | chr1.2:77553737-77553756 | MS.gene006477:intron | 30.0% |
| AAATTAGGCTAAGTTACCTG+TGG | - | chr1.2:77552716-77552735 | None:intergenic | 35.0% | |
| AGATATTTACGAATTCGGAC+AGG | + | chr1.2:77553106-77553125 | MS.gene006477:intron | 35.0% | |
| ATCATTGCGGGTAAAGAAAT+GGG | + | chr1.2:77553777-77553796 | MS.gene006477:CDS | 35.0% | |
| ATGGACATACAATCTTCCTT+TGG | - | chr1.2:77553003-77553022 | None:intergenic | 35.0% | |
| CAGAAGTGATTCCTGAAATA+TGG | + | chr1.2:77554085-77554104 | MS.gene006477:CDS | 35.0% | |
| GAAATCGAACTTGCAAAGTT+TGG | - | chr1.2:77553832-77553851 | None:intergenic | 35.0% | |
| GAAGTGATTCCTGAAATATG+GGG | + | chr1.2:77554087-77554106 | MS.gene006477:CDS | 35.0% | |
| GACAGTGAAAAACAATGTAG+GGG | + | chr1.2:77554026-77554045 | MS.gene006477:CDS | 35.0% | |
| GAGACAGTGAAAAACAATGT+AGG | + | chr1.2:77554024-77554043 | MS.gene006477:CDS | 35.0% | |
| GGGTTGAATTAGGTAGATTT+GGG | - | chr1.2:77553209-77553228 | None:intergenic | 35.0% | |
| GTGCTACACTCTATATCTTA+TGG | + | chr1.2:77552774-77552793 | MS.gene006477:intron | 35.0% | |
| GTTGAACTCTTTAAATCCCA+CGG | + | chr1.2:77552636-77552655 | MS.gene006477:CDS | 35.0% | |
| TACAATCTTCCTTTGGTTGA+TGG | - | chr1.2:77552996-77553015 | None:intergenic | 35.0% | |
| TCAAACCAGACATTCAGTTA+AGG | + | chr1.2:77552957-77552976 | MS.gene006477:CDS | 35.0% | |
| TGTTCGTTTGTTTGCTTTCA+CGG | + | chr1.2:77552735-77552754 | MS.gene006477:intron | 35.0% | |
| ACTCTACTTCCCCATATTTC+AGG | - | chr1.2:77554099-77554118 | None:intergenic | 40.0% | |
| AGGTTCCTTAACTGAATGTC+TGG | - | chr1.2:77552965-77552984 | None:intergenic | 40.0% | |
| AGTGTTCGAAACATCATTGC+GGG | + | chr1.2:77553765-77553784 | MS.gene006477:CDS | 40.0% | |
| CAGTGTTCGAAACATCATTG+CGG | + | chr1.2:77553764-77553783 | MS.gene006477:CDS | 40.0% | |
| CATCATTGCGGGTAAAGAAA+TGG | + | chr1.2:77553776-77553795 | MS.gene006477:CDS | 40.0% | |
| GTTCTTCTTAGTTTCGTGCA+CGG | + | chr1.2:77552914-77552933 | MS.gene006477:intron | 40.0% | |
| TCGAACTTGCAAAGTTTGGT+CGG | - | chr1.2:77553828-77553847 | None:intergenic | 40.0% | |
| TCTTACGTTCCATCAACCAA+AGG | + | chr1.2:77552984-77553003 | MS.gene006477:CDS | 40.0% | |
| TGAAATATGGGGAAGTAGAG+TGG | + | chr1.2:77554098-77554117 | MS.gene006477:CDS | 40.0% | |
| TTACCTGTGGTATTCTTCTG+CGG | - | chr1.2:77552703-77552722 | None:intergenic | 40.0% | |
| ! | CGGGTTGAATTAGGTAGATT+TGG | - | chr1.2:77553210-77553229 | None:intergenic | 40.0% |
| ! | CTTATGGATCACCGAGATTT+TGG | + | chr1.2:77552790-77552809 | MS.gene006477:intron | 40.0% |
| !! | TTTGGTTGATGGAACGTAAG+AGG | - | chr1.2:77552985-77553004 | None:intergenic | 40.0% |
| AACGAAGGTTTCAAGAGGAC+AGG | - | chr1.2:77553246-77553265 | None:intergenic | 45.0% | |
| ACGAAGGTTTCAAGAGGACA+GGG | - | chr1.2:77553245-77553264 | None:intergenic | 45.0% | |
| AGCTTGGATCGCAATCTTGA+AGG | - | chr1.2:77553274-77553293 | None:intergenic | 45.0% | |
| AGTCGTAACGACTTGTCGAA+TGG | + | chr1.2:77553338-77553357 | MS.gene006477:intron | 45.0% | |
| CAATGTAGGGGACTATGTAG+TGG | + | chr1.2:77554038-77554057 | MS.gene006477:CDS | 45.0% | |
| CATCCAACGAAGGTTTCAAG+AGG | - | chr1.2:77553251-77553270 | None:intergenic | 45.0% | |
| CTAAGCGCATATACTGCTGT+TGG | + | chr1.2:77554171-77554190 | MS.gene006477:CDS | 45.0% | |
| GATTCATGCACTTACAGCGT+TGG | + | chr1.2:77553128-77553147 | MS.gene006477:CDS | 45.0% | |
| TCGTTTGTTTGCTTTCACGG+TGG | + | chr1.2:77552738-77552757 | MS.gene006477:intron | 45.0% | |
| TGTCCTCTTGAAACCTTCGT+TGG | + | chr1.2:77553245-77553264 | MS.gene006477:CDS | 45.0% | |
| TTCTTAGTTTCGTGCACGGA+AGG | + | chr1.2:77552918-77552937 | MS.gene006477:intron | 45.0% | |
| ! | AAAGAGTTCAACTCTGAGGG+TGG | - | chr1.2:77552628-77552647 | None:intergenic | 45.0% |
| ! | AATGGGTCTCCACACTGTTT+TGG | + | chr1.2:77553794-77553813 | MS.gene006477:CDS | 45.0% |
| !! | ATCTTGAAGGCATCCAACGA+AGG | - | chr1.2:77553261-77553280 | None:intergenic | 45.0% |
| !! | TAAACTATTATTAAAAAAAA+TGG | + | chr1.2:77553608-77553627 | MS.gene006477:intron | 5.0% |
| AAGAGGACAGGGAATTCGTC+GGG | - | chr1.2:77553234-77553253 | None:intergenic | 50.0% | |
| ATCGCGCACAAACAGCGAAT+TGG | + | chr1.2:77554140-77554159 | MS.gene006477:CDS | 50.0% | |
| CAAGAGGACAGGGAATTCGT+CGG | - | chr1.2:77553235-77553254 | None:intergenic | 50.0% | |
| CGTAACGACTTGTCGAATGG+TGG | + | chr1.2:77553341-77553360 | MS.gene006477:intron | 50.0% | |
| TCACCGCAGAAGAATACCAC+AGG | + | chr1.2:77552697-77552716 | MS.gene006477:CDS | 50.0% | |
| ! | AACTCTGAGGGTGGAAGCTT+TGG | - | chr1.2:77552619-77552638 | None:intergenic | 50.0% |
| ! | ATGCACTTACAGCGTTGGAC+AGG | + | chr1.2:77553133-77553152 | MS.gene006477:CDS | 50.0% |
| ! | TTACAGCGTTGGACAGGCTT+GGG | + | chr1.2:77553139-77553158 | MS.gene006477:CDS | 50.0% |
| AGAGGACAGGGAATTCGTCG+GGG | - | chr1.2:77553233-77553252 | None:intergenic | 55.0% | |
| ATAGCCTAGTGCGCGCAAAC+CGG | - | chr1.2:77552673-77552692 | None:intergenic | 55.0% | |
| CAACGTGGATCCTCGTCGTA+CGG | + | chr1.2:77553296-77553315 | MS.gene006477:CDS | 55.0% | |
| ! | AGTTGACTCACCGTACGACG+AGG | - | chr1.2:77553309-77553328 | None:intergenic | 55.0% |
| ! | CTTACAGCGTTGGACAGGCT+TGG | + | chr1.2:77553138-77553157 | MS.gene006477:CDS | 55.0% |
| CGTACGACGAGGATCCACGT+TGG | - | chr1.2:77553298-77553317 | None:intergenic | 60.0% | |
| GAGGATCCACGTTGGCAGCT+TGG | - | chr1.2:77553290-77553309 | None:intergenic | 60.0% | |
| TAGTGCGCGCAAACCGGCAA+GGG | - | chr1.2:77552667-77552686 | None:intergenic | 60.0% | |
| TGCGATCCAAGCTGCCAACG+TGG | + | chr1.2:77553281-77553300 | MS.gene006477:CDS | 60.0% | |
| !! | TCGTCGGGGCGGGTTGAATT+AGG | - | chr1.2:77553219-77553238 | None:intergenic | 60.0% |
| CTAGTGCGCGCAAACCGGCA+AGG | - | chr1.2:77552668-77552687 | None:intergenic | 65.0% | |
| GACAGGGAATTCGTCGGGGC+GGG | - | chr1.2:77553229-77553248 | None:intergenic | 65.0% | |
| GGACAGGGAATTCGTCGGGG+CGG | - | chr1.2:77553230-77553249 | None:intergenic | 65.0% | |
| TCCCACGGTAGCACCCTTGC+CGG | + | chr1.2:77552651-77552670 | MS.gene006477:CDS | 65.0% | |
| !! | AACCGGCAAGGGTGCTACCG+TGG | - | chr1.2:77552656-77552675 | None:intergenic | 65.0% |
| !! | ACCGGCAAGGGTGCTACCGT+GGG | - | chr1.2:77552655-77552674 | None:intergenic | 65.0% |
| !! | CTTGCCGGTTTGCGCGCACT+AGG | + | chr1.2:77552666-77552685 | MS.gene006477:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 77552591 | 77554200 | 77552591 | ID=MS.gene006477 |
| chr1.2 | mRNA | 77552591 | 77554200 | 77552591 | ID=MS.gene006477.t1;Parent=MS.gene006477 |
| chr1.2 | exon | 77552591 | 77552718 | 77552591 | ID=MS.gene006477.t1.exon1;Parent=MS.gene006477.t1 |
| chr1.2 | CDS | 77552591 | 77552718 | 77552591 | ID=cds.MS.gene006477.t1;Parent=MS.gene006477.t1 |
| chr1.2 | exon | 77552925 | 77553012 | 77552925 | ID=MS.gene006477.t1.exon2;Parent=MS.gene006477.t1 |
| chr1.2 | CDS | 77552925 | 77553012 | 77552925 | ID=cds.MS.gene006477.t1;Parent=MS.gene006477.t1 |
| chr1.2 | exon | 77553108 | 77553317 | 77553108 | ID=MS.gene006477.t1.exon3;Parent=MS.gene006477.t1 |
| chr1.2 | CDS | 77553108 | 77553317 | 77553108 | ID=cds.MS.gene006477.t1;Parent=MS.gene006477.t1 |
| chr1.2 | exon | 77553750 | 77553815 | 77553750 | ID=MS.gene006477.t1.exon4;Parent=MS.gene006477.t1 |
| chr1.2 | CDS | 77553750 | 77553815 | 77553750 | ID=cds.MS.gene006477.t1;Parent=MS.gene006477.t1 |
| chr1.2 | exon | 77554018 | 77554200 | 77554018 | ID=MS.gene006477.t1.exon5;Parent=MS.gene006477.t1 |
| chr1.2 | CDS | 77554018 | 77554200 | 77554018 | ID=cds.MS.gene006477.t1;Parent=MS.gene006477.t1 |
| Gene Sequence |
| Protein sequence |