Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26907.t1 | XP_003592405.1 | 98.1 | 264 | 5 | 0 | 1 | 264 | 1 | 264 | 5.80E-145 | 523.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26907.t1 | Q09893 | 31.6 | 190 | 116 | 4 | 13 | 199 | 8 | 186 | 5.7e-16 | 86.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26907.t1 | B7FKK9 | 98.1 | 264 | 5 | 0 | 1 | 264 | 1 | 264 | 4.2e-145 | 523.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87483 | MS.gene26907 | PPI |
| MS.gene26907 | MS.gene99621 | PPI |
| MS.gene26907 | MS.gene78803 | PPI |
| MS.gene26907 | MS.gene055276 | PPI |
| MS.gene066714 | MS.gene26907 | PPI |
| MS.gene26907 | MS.gene46174 | PPI |
| MS.gene96863 | MS.gene26907 | PPI |
| MS.gene26907 | MS.gene50434 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26907.t1 | MTR_1g104610 | 98.106 | 264 | 5 | 0 | 1 | 264 | 1 | 264 | 0.0 | 534 |
| MS.gene26907.t1 | MTR_1g104610 | 93.607 | 219 | 14 | 0 | 1 | 219 | 1 | 219 | 1.63e-149 | 417 |
| MS.gene26907.t1 | MTR_4g021800 | 45.865 | 266 | 103 | 2 | 8 | 234 | 14 | 277 | 2.88e-78 | 239 |
| MS.gene26907.t1 | MTR_7g062150 | 45.018 | 271 | 105 | 2 | 10 | 238 | 15 | 283 | 3.37e-78 | 239 |
| MS.gene26907.t1 | MTR_1g085570 | 48.729 | 236 | 109 | 5 | 10 | 244 | 19 | 243 | 1.02e-77 | 236 |
| MS.gene26907.t1 | MTR_1g085570 | 48.729 | 236 | 109 | 5 | 10 | 244 | 11 | 235 | 1.24e-77 | 235 |
| MS.gene26907.t1 | MTR_1g085570 | 48.523 | 237 | 109 | 6 | 10 | 244 | 11 | 236 | 8.41e-76 | 231 |
| MS.gene26907.t1 | MTR_1g085570 | 52.551 | 196 | 87 | 2 | 10 | 205 | 11 | 200 | 1.55e-73 | 224 |
| MS.gene26907.t1 | MTR_2g097520 | 42.143 | 280 | 124 | 5 | 3 | 246 | 7 | 284 | 4.00e-73 | 225 |
| MS.gene26907.t1 | MTR_4g064380 | 43.952 | 248 | 114 | 4 | 10 | 234 | 15 | 260 | 4.03e-72 | 223 |
| MS.gene26907.t1 | MTR_4g021825 | 42.545 | 275 | 112 | 4 | 3 | 234 | 31 | 302 | 3.01e-71 | 222 |
| MS.gene26907.t1 | MTR_4g021800 | 45.299 | 234 | 87 | 2 | 40 | 234 | 1 | 232 | 1.02e-64 | 202 |
| MS.gene26907.t1 | MTR_4g021800 | 44.651 | 215 | 80 | 1 | 8 | 183 | 14 | 228 | 1.49e-59 | 189 |
| MS.gene26907.t1 | MTR_7g062150 | 44.444 | 216 | 78 | 1 | 10 | 183 | 15 | 230 | 2.45e-59 | 189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26907.t1 | AT2G32150 | 60.456 | 263 | 95 | 4 | 8 | 264 | 4 | 263 | 1.57e-110 | 320 |
| MS.gene26907.t1 | AT2G32150 | 69.347 | 199 | 60 | 1 | 8 | 205 | 4 | 202 | 1.00e-98 | 288 |
| MS.gene26907.t1 | AT2G32150 | 70.056 | 177 | 52 | 1 | 8 | 183 | 4 | 180 | 7.98e-88 | 259 |
| MS.gene26907.t1 | AT5G02230 | 46.743 | 261 | 112 | 3 | 1 | 236 | 1 | 259 | 2.86e-73 | 225 |
| MS.gene26907.t1 | AT5G02230 | 46.743 | 261 | 112 | 3 | 1 | 236 | 1 | 259 | 2.86e-73 | 225 |
| MS.gene26907.t1 | AT5G02230 | 46.743 | 261 | 112 | 3 | 1 | 236 | 38 | 296 | 1.65e-72 | 224 |
| MS.gene26907.t1 | AT5G59480 | 42.969 | 256 | 120 | 6 | 8 | 240 | 13 | 265 | 2.34e-70 | 218 |
| MS.gene26907.t1 | AT5G59480 | 42.969 | 256 | 120 | 6 | 8 | 240 | 13 | 265 | 2.34e-70 | 218 |
| MS.gene26907.t1 | AT5G59480 | 42.969 | 256 | 120 | 6 | 8 | 240 | 13 | 265 | 2.34e-70 | 218 |
| MS.gene26907.t1 | AT5G59480 | 42.969 | 256 | 120 | 6 | 8 | 240 | 13 | 265 | 2.34e-70 | 218 |
| MS.gene26907.t1 | AT5G59480 | 42.969 | 256 | 119 | 7 | 8 | 240 | 13 | 264 | 5.63e-68 | 212 |
| MS.gene26907.t1 | AT5G59490 | 44.898 | 245 | 126 | 3 | 1 | 238 | 1 | 243 | 7.06e-68 | 211 |
| MS.gene26907.t1 | AT3G62040 | 48.309 | 207 | 96 | 4 | 40 | 245 | 1 | 197 | 4.41e-66 | 205 |
| MS.gene26907.t1 | AT5G59490 | 47.642 | 212 | 104 | 2 | 1 | 205 | 1 | 212 | 9.58e-61 | 191 |
Find 75 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGTCGGGGCGGGTTGAATT+AGG | 0.220477 | 1.4:-80493612 | None:intergenic |
| CAGAAGTGATTCCTGAAATA+TGG | 0.228599 | 1.4:+80494497 | MS.gene26907:CDS |
| AACTCTGAGGGTGGAAGCTT+TGG | 0.284733 | 1.4:-80493011 | None:intergenic |
| ACTCTACTTCCCCATATTTC+AGG | 0.304394 | 1.4:-80494508 | None:intergenic |
| TACAATCTTCCTTTGGTTGA+TGG | 0.306805 | 1.4:-80493389 | None:intergenic |
| CTTAACGGCAGCTCCGATTC+CGG | 0.322496 | 1.4:-80492942 | None:intergenic |
| TTGTTAGATATTTACGAATT+CGG | 0.336620 | 1.4:+80493497 | MS.gene26907:intron |
| CGGGTTGAATTAGGTAGATT+CGG | 0.340373 | 1.4:-80493603 | None:intergenic |
| AATGGGTCTCCACACTGTTT+TGG | 0.343608 | 1.4:+80494189 | MS.gene26907:CDS |
| CATCATCGCGGGTAAAGAAA+TGG | 0.374288 | 1.4:+80494171 | MS.gene26907:CDS |
| AGGTTCCTTAACTGAATGTC+TGG | 0.381562 | 1.4:-80493358 | None:intergenic |
| ATCGCGCACAAACAGCGAAT+TGG | 0.385299 | 1.4:+80494552 | MS.gene26907:CDS |
| CCCTTCGACTGCATTATCTT+CGG | 0.406216 | 1.4:+80492802 | MS.gene26907:CDS |
| TTAGAGCGTTGGACAGGCTT+GGG | 0.407036 | 1.4:+80493535 | MS.gene26907:CDS |
| TCCCACGGTAGCACCCTTGC+CGG | 0.428799 | 1.4:+80493046 | MS.gene26907:CDS |
| AAGAGGACAGGGAATTCGTC+GGG | 0.430210 | 1.4:-80493627 | None:intergenic |
| ATGGACATACAATCTTCCTT+TGG | 0.430892 | 1.4:-80493396 | None:intergenic |
| CTTAGAGCGTTGGACAGGCT+TGG | 0.434451 | 1.4:+80493534 | MS.gene26907:CDS |
| TACCCATCCAACACCGGAAT+CGG | 0.434558 | 1.4:+80492929 | MS.gene26907:CDS |
| AGAAGTGATTCCTGAAATAT+GGG | 0.441987 | 1.4:+80494498 | MS.gene26907:CDS |
| TTTGGTTGATGGAACGTAAG+AGG | 0.450307 | 1.4:-80493378 | None:intergenic |
| GCTCCGATTCCGGTGTTGGA+TGG | 0.451001 | 1.4:-80492932 | None:intergenic |
| GACAGGGAATTCGTCGGGGC+GGG | 0.456541 | 1.4:-80493622 | None:intergenic |
| TAGTGCGCGCAAACCGGCAA+GGG | 0.457452 | 1.4:-80493059 | None:intergenic |
| GTTGGACAGGCTTGGGATAA+CGG | 0.457545 | 1.4:+80493542 | MS.gene26907:CDS |
| AACGAAGGTTTCAAGAGGAC+AGG | 0.466936 | 1.4:-80493639 | None:intergenic |
| GGCAGCTCCGATTCCGGTGT+TGG | 0.474489 | 1.4:-80492936 | None:intergenic |
| CTCCGATTCCGGTGTTGGAT+GGG | 0.477392 | 1.4:-80492931 | None:intergenic |
| GGGTTGAATTAGGTAGATTC+GGG | 0.478752 | 1.4:-80493602 | None:intergenic |
| TCAAACCAGACATTCAGTTA+AGG | 0.484093 | 1.4:+80493353 | MS.gene26907:CDS |
| CTAAGCGCATATACAGCTGT+TGG | 0.487304 | 1.4:+80494583 | MS.gene26907:CDS |
| CTTGCCGGTTTGCGCGCACT+AGG | 0.496427 | 1.4:+80493061 | MS.gene26907:CDS |
| ATCATCGCGGGTAAAGAAAT+GGG | 0.498789 | 1.4:+80494172 | MS.gene26907:CDS |
| TTCTTAGTTTCGTGCACGGA+AGG | 0.502187 | 1.4:+80493314 | MS.gene26907:intron |
| AAACATTGATCTCTTCCTCA+TGG | 0.505692 | 1.4:+80492967 | MS.gene26907:CDS |
| TGTCCTCTTGAAACCTTCGT+TGG | 0.512254 | 1.4:+80493641 | MS.gene26907:CDS |
| TCCGGTGTTGGATGGGTACA+AGG | 0.513354 | 1.4:-80492924 | None:intergenic |
| GAGGATCCACGTTGGCAGCT+TGG | 0.514928 | 1.4:-80493683 | None:intergenic |
| ATGCACTTAGAGCGTTGGAC+AGG | 0.519534 | 1.4:+80493529 | MS.gene26907:CDS |
| ATAGCCTAGTGCGCGCAAAC+CGG | 0.536055 | 1.4:-80493065 | None:intergenic |
| GATTCATGCACTTAGAGCGT+TGG | 0.537491 | 1.4:+80493524 | MS.gene26907:CDS |
| AGCTTGGATCGCAATCTTGA+AGG | 0.539852 | 1.4:-80493667 | None:intergenic |
| AGATATTTACGAATTCGGAC+AGG | 0.548364 | 1.4:+80493502 | MS.gene26907:intron |
| CAACGTGGATCCTCGTCGTA+CGG | 0.560427 | 1.4:+80493692 | MS.gene26907:CDS |
| TGAAATATGGGGAAGTAGAG+TGG | 0.562799 | 1.4:+80494510 | MS.gene26907:CDS |
| AACCGGCAAGGGTGCTACCG+TGG | 0.563938 | 1.4:-80493048 | None:intergenic |
| TCTGGTTTGATTAATTCGTA+AGG | 0.564418 | 1.4:-80493340 | None:intergenic |
| ACCGAAGATAATGCAGTCGA+AGG | 0.565357 | 1.4:-80492803 | None:intergenic |
| CTAGTGCGCGCAAACCGGCA+AGG | 0.567139 | 1.4:-80493060 | None:intergenic |
| CAAGAGGACAGGGAATTCGT+CGG | 0.575073 | 1.4:-80493628 | None:intergenic |
| CAATGTAGGGGACTATGTAG+TGG | 0.578865 | 1.4:+80494450 | MS.gene26907:CDS |
| TTTAAAGAGTTCAACTCTGA+GGG | 0.583777 | 1.4:-80493023 | None:intergenic |
| ACCGGCAAGGGTGCTACCGT+GGG | 0.588555 | 1.4:-80493047 | None:intergenic |
| GTTGAACTCTTTAAATCCCA+CGG | 0.595556 | 1.4:+80493031 | MS.gene26907:CDS |
| GTTCTTCTTAGTTTCGTGCA+CGG | 0.597143 | 1.4:+80493310 | MS.gene26907:intron |
| TTACCTGTGGTATTCTTCTG+CGG | 0.597503 | 1.4:-80493095 | None:intergenic |
| ATAATGCAGTCGAAGGGAGA+AGG | 0.598311 | 1.4:-80492796 | None:intergenic |
| ACCTTGTACCCATCCAACAC+CGG | 0.610346 | 1.4:+80492923 | MS.gene26907:CDS |
| AAAGAGTTCAACTCTGAGGG+TGG | 0.612715 | 1.4:-80493020 | None:intergenic |
| AGTGTTCGAAACATCATCGC+GGG | 0.618927 | 1.4:+80494160 | MS.gene26907:CDS |
| GGACAGGGAATTCGTCGGGG+CGG | 0.619508 | 1.4:-80493623 | None:intergenic |
| CCGAAGATAATGCAGTCGAA+GGG | 0.620542 | 1.4:-80492802 | None:intergenic |
| ATCTTGAAGGCATCCAACGA+AGG | 0.622873 | 1.4:-80493654 | None:intergenic |
| ATTTAAAGAGTTCAACTCTG+AGG | 0.633078 | 1.4:-80493024 | None:intergenic |
| ACGAAGGTTTCAAGAGGACA+GGG | 0.645747 | 1.4:-80493638 | None:intergenic |
| TCACCGCAGAAGAATACCAC+AGG | 0.655318 | 1.4:+80493092 | MS.gene26907:CDS |
| TGCGATCCAAGCTGCCAACG+TGG | 0.658698 | 1.4:+80493677 | MS.gene26907:CDS |
| CATCCAACGAAGGTTTCAAG+AGG | 0.662600 | 1.4:-80493644 | None:intergenic |
| AGTTGACTCACCGTACGACG+AGG | 0.671211 | 1.4:-80493702 | None:intergenic |
| TCTTACGTTCCATCAACCAA+AGG | 0.686021 | 1.4:+80493380 | MS.gene26907:CDS |
| AGAGGACAGGGAATTCGTCG+GGG | 0.686285 | 1.4:-80493626 | None:intergenic |
| GAAGTGATTCCTGAAATATG+GGG | 0.730085 | 1.4:+80494499 | MS.gene26907:CDS |
| GTAAAATTACCAAAACAGTG+TGG | 0.739988 | 1.4:-80494198 | None:intergenic |
| CAGTGTTCGAAACATCATCG+CGG | 0.767787 | 1.4:+80494159 | MS.gene26907:CDS |
| CGTACGACGAGGATCCACGT+TGG | 0.778989 | 1.4:-80493691 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTAAGATTAGAAAA+TGG | - | chr1.4:80493418-80493437 | None:intergenic | 10.0% |
| !!! | CTTGAAATTATTATTATTTT+TGG | + | chr1.4:80493441-80493460 | MS.gene26907:intron | 10.0% |
| !! | TGTCAAATTCTTTATAATTA+TGG | + | chr1.4:80493873-80493892 | MS.gene26907:intron | 15.0% |
| !!! | TTGGTATATATTTCTAATTT+TGG | + | chr1.4:80493460-80493479 | MS.gene26907:intron | 15.0% |
| !! | AATTGAAGAAGTTTGTAAAT+TGG | - | chr1.4:80492855-80492874 | None:intergenic | 20.0% |
| !! | AGTTAATTGTTAGTTAACTT+TGG | + | chr1.4:80493960-80493979 | MS.gene26907:intron | 20.0% |
| !! | ATCATACATACTACTTAATT+TGG | - | chr1.4:80493275-80493294 | None:intergenic | 20.0% |
| !! | ATTTATTGATCAAACAGATT+TGG | + | chr1.4:80492895-80492914 | MS.gene26907:intron | 20.0% |
| !! | TTGCAAGTAAATATTAACTT+TGG | - | chr1.4:80494234-80494253 | None:intergenic | 20.0% |
| !! | TTGTTAGATATTTACGAATT+CGG | + | chr1.4:80493497-80493516 | MS.gene26907:intron | 20.0% |
| !!! | TAAATATTAACTTTGGAGTT+TGG | - | chr1.4:80494227-80494246 | None:intergenic | 20.0% |
| !!! | TTATAATTATGGTGTTGATT+TGG | + | chr1.4:80493884-80493903 | MS.gene26907:intron | 20.0% |
| ! | GTATGTTTATGTGTTTATGT+AGG | + | chr1.4:80494408-80494427 | MS.gene26907:intron | 25.0% |
| ! | TTAAGTTTATGCCAAAATCT+CGG | - | chr1.4:80493199-80493218 | None:intergenic | 25.0% |
| ! | TTTATGTGTTTATGTAGGTT+GGG | + | chr1.4:80494413-80494432 | MS.gene26907:intron | 25.0% |
| !! | GAGATCAATGTTTTTCTTAA+CGG | - | chr1.4:80492960-80492979 | None:intergenic | 25.0% |
| !! | TTTGGAGTTGGATTAAATAA+TGG | + | chr1.4:80493978-80493997 | MS.gene26907:intron | 25.0% |
| AGAAGTGATTCCTGAAATAT+GGG | + | chr1.4:80494498-80494517 | MS.gene26907:CDS | 30.0% | |
| AGACAGTGAAAAACAATGTA+GGG | + | chr1.4:80494437-80494456 | MS.gene26907:CDS | 30.0% | |
| AGCAAACAAACGAACAAATT+AGG | - | chr1.4:80493126-80493145 | None:intergenic | 30.0% | |
| ATTTAAAGAGTTCAACTCTG+AGG | - | chr1.4:80493027-80493046 | None:intergenic | 30.0% | |
| GTAAAATTACCAAAACAGTG+TGG | - | chr1.4:80494201-80494220 | None:intergenic | 30.0% | |
| GTTTATGTGTTTATGTAGGT+TGG | + | chr1.4:80494412-80494431 | MS.gene26907:intron | 30.0% | |
| TCAATTAAATTAGTGCTGTC+TGG | - | chr1.4:80494344-80494363 | None:intergenic | 30.0% | |
| TGCGACTATAACTTCATAAA+AGG | - | chr1.4:80494052-80494071 | None:intergenic | 30.0% | |
| TTATGTGTTTATGTAGGTTG+GGG | + | chr1.4:80494414-80494433 | MS.gene26907:intron | 30.0% | |
| TTTAAAGAGTTCAACTCTGA+GGG | - | chr1.4:80493026-80493045 | None:intergenic | 30.0% | |
| ! | GAAAAAGAATTGAGTTGTTG+AGG | + | chr1.4:80493917-80493936 | MS.gene26907:intron | 30.0% |
| ! | TCTGGTTTGATTAATTCGTA+AGG | - | chr1.4:80493343-80493362 | None:intergenic | 30.0% |
| !! | TATTAACTTTGGAGTTTGGT+CGG | - | chr1.4:80494223-80494242 | None:intergenic | 30.0% |
| !! | TTGTTAGTTAACTTTGGAGT+TGG | + | chr1.4:80493966-80493985 | MS.gene26907:intron | 30.0% |
| AAACATTGATCTCTTCCTCA+TGG | + | chr1.4:80492967-80492986 | MS.gene26907:CDS | 35.0% | |
| AAATTAGGCTAAGTTACCTG+TGG | - | chr1.4:80493111-80493130 | None:intergenic | 35.0% | |
| AGATATTTACGAATTCGGAC+AGG | + | chr1.4:80493502-80493521 | MS.gene26907:intron | 35.0% | |
| ATGGACATACAATCTTCCTT+TGG | - | chr1.4:80493399-80493418 | None:intergenic | 35.0% | |
| CAGAAGTGATTCCTGAAATA+TGG | + | chr1.4:80494497-80494516 | MS.gene26907:CDS | 35.0% | |
| GAAGTGATTCCTGAAATATG+GGG | + | chr1.4:80494499-80494518 | MS.gene26907:CDS | 35.0% | |
| GACAGTGAAAAACAATGTAG+GGG | + | chr1.4:80494438-80494457 | MS.gene26907:CDS | 35.0% | |
| GAGACAGTGAAAAACAATGT+AGG | + | chr1.4:80494436-80494455 | MS.gene26907:CDS | 35.0% | |
| GTGCTACACTCTATATCTTA+TGG | + | chr1.4:80493169-80493188 | MS.gene26907:intron | 35.0% | |
| GTTGAACTCTTTAAATCCCA+CGG | + | chr1.4:80493031-80493050 | MS.gene26907:CDS | 35.0% | |
| TACAATCTTCCTTTGGTTGA+TGG | - | chr1.4:80493392-80493411 | None:intergenic | 35.0% | |
| TCAAACCAGACATTCAGTTA+AGG | + | chr1.4:80493353-80493372 | MS.gene26907:CDS | 35.0% | |
| ! | AGAAACCACATTTTTCCATG+AGG | - | chr1.4:80492985-80493004 | None:intergenic | 35.0% |
| !! | TCTTGTTCTGCAGTTGTTTT+TGG | + | chr1.4:80494132-80494151 | MS.gene26907:intron | 35.0% |
| !!! | GCACGATTTTGAAATATCCA+CGG | - | chr1.4:80493153-80493172 | None:intergenic | 35.0% |
| ACTCTACTTCCCCATATTTC+AGG | - | chr1.4:80494511-80494530 | None:intergenic | 40.0% | |
| AGGTTCCTTAACTGAATGTC+TGG | - | chr1.4:80493361-80493380 | None:intergenic | 40.0% | |
| ATCATCGCGGGTAAAGAAAT+GGG | + | chr1.4:80494172-80494191 | MS.gene26907:CDS | 40.0% | |
| CTCTTCCTCATGGAAAAATG+TGG | + | chr1.4:80492977-80492996 | MS.gene26907:CDS | 40.0% | |
| GGGTTGAATTAGGTAGATTC+GGG | - | chr1.4:80493605-80493624 | None:intergenic | 40.0% | |
| GTTCTTCTTAGTTTCGTGCA+CGG | + | chr1.4:80493310-80493329 | MS.gene26907:intron | 40.0% | |
| TCTTACGTTCCATCAACCAA+AGG | + | chr1.4:80493380-80493399 | MS.gene26907:CDS | 40.0% | |
| TGAAATATGGGGAAGTAGAG+TGG | + | chr1.4:80494510-80494529 | MS.gene26907:CDS | 40.0% | |
| TTACCTGTGGTATTCTTCTG+CGG | - | chr1.4:80493098-80493117 | None:intergenic | 40.0% | |
| ! | CGGGTTGAATTAGGTAGATT+CGG | - | chr1.4:80493606-80493625 | None:intergenic | 40.0% |
| ! | CTTATGGATCACCGAGATTT+TGG | + | chr1.4:80493185-80493204 | MS.gene26907:intron | 40.0% |
| !! | TTTGGTTGATGGAACGTAAG+AGG | - | chr1.4:80493381-80493400 | None:intergenic | 40.0% |
| AACGAAGGTTTCAAGAGGAC+AGG | - | chr1.4:80493642-80493661 | None:intergenic | 45.0% | |
| ACCGAAGATAATGCAGTCGA+AGG | - | chr1.4:80492806-80492825 | None:intergenic | 45.0% | |
| ACGAAGGTTTCAAGAGGACA+GGG | - | chr1.4:80493641-80493660 | None:intergenic | 45.0% | |
| AGCTTGGATCGCAATCTTGA+AGG | - | chr1.4:80493670-80493689 | None:intergenic | 45.0% | |
| AGTGTTCGAAACATCATCGC+GGG | + | chr1.4:80494160-80494179 | MS.gene26907:CDS | 45.0% | |
| ATAATGCAGTCGAAGGGAGA+AGG | - | chr1.4:80492799-80492818 | None:intergenic | 45.0% | |
| CAATGTAGGGGACTATGTAG+TGG | + | chr1.4:80494450-80494469 | MS.gene26907:CDS | 45.0% | |
| CAGTGTTCGAAACATCATCG+CGG | + | chr1.4:80494159-80494178 | MS.gene26907:CDS | 45.0% | |
| CATCATCGCGGGTAAAGAAA+TGG | + | chr1.4:80494171-80494190 | MS.gene26907:CDS | 45.0% | |
| CATCCAACGAAGGTTTCAAG+AGG | - | chr1.4:80493647-80493666 | None:intergenic | 45.0% | |
| CCCTTCGACTGCATTATCTT+CGG | + | chr1.4:80492802-80492821 | MS.gene26907:CDS | 45.0% | |
| CCGAAGATAATGCAGTCGAA+GGG | - | chr1.4:80492805-80492824 | None:intergenic | 45.0% | |
| CGTAACGACTTGTCGAATGA+TGG | + | chr1.4:80493737-80493756 | MS.gene26907:intron | 45.0% | |
| CTAAGCGCATATACAGCTGT+TGG | + | chr1.4:80494583-80494602 | MS.gene26907:CDS | 45.0% | |
| GATTCATGCACTTAGAGCGT+TGG | + | chr1.4:80493524-80493543 | MS.gene26907:CDS | 45.0% | |
| TCGTTTGTTTGCTTTCACCG+TGG | + | chr1.4:80493133-80493152 | MS.gene26907:intron | 45.0% | |
| TGTCCTCTTGAAACCTTCGT+TGG | + | chr1.4:80493641-80493660 | MS.gene26907:CDS | 45.0% | |
| TTCTTAGTTTCGTGCACGGA+AGG | + | chr1.4:80493314-80493333 | MS.gene26907:intron | 45.0% | |
| ! | AAAGAGTTCAACTCTGAGGG+TGG | - | chr1.4:80493023-80493042 | None:intergenic | 45.0% |
| ! | AATGGGTCTCCACACTGTTT+TGG | + | chr1.4:80494189-80494208 | MS.gene26907:CDS | 45.0% |
| !! | ATCTTGAAGGCATCCAACGA+AGG | - | chr1.4:80493657-80493676 | None:intergenic | 45.0% |
| !! | TAAACTATTATTAAAAAAAA+TGG | + | chr1.4:80494003-80494022 | MS.gene26907:intron | 5.0% |
| AAGAGGACAGGGAATTCGTC+GGG | - | chr1.4:80493630-80493649 | None:intergenic | 50.0% | |
| ACCTTGTACCCATCCAACAC+CGG | + | chr1.4:80492923-80492942 | MS.gene26907:CDS | 50.0% | |
| ATCGCGCACAAACAGCGAAT+TGG | + | chr1.4:80494552-80494571 | MS.gene26907:CDS | 50.0% | |
| CAAGAGGACAGGGAATTCGT+CGG | - | chr1.4:80493631-80493650 | None:intergenic | 50.0% | |
| GTTGGACAGGCTTGGGATAA+CGG | + | chr1.4:80493542-80493561 | MS.gene26907:CDS | 50.0% | |
| TACCCATCCAACACCGGAAT+CGG | + | chr1.4:80492929-80492948 | MS.gene26907:CDS | 50.0% | |
| TCACCGCAGAAGAATACCAC+AGG | + | chr1.4:80493092-80493111 | MS.gene26907:CDS | 50.0% | |
| ! | AACTCTGAGGGTGGAAGCTT+TGG | - | chr1.4:80493014-80493033 | None:intergenic | 50.0% |
| !! | ATGCACTTAGAGCGTTGGAC+AGG | + | chr1.4:80493529-80493548 | MS.gene26907:CDS | 50.0% |
| !! | TTAGAGCGTTGGACAGGCTT+GGG | + | chr1.4:80493535-80493554 | MS.gene26907:CDS | 50.0% |
| AGAGGACAGGGAATTCGTCG+GGG | - | chr1.4:80493629-80493648 | None:intergenic | 55.0% | |
| ATAGCCTAGTGCGCGCAAAC+CGG | - | chr1.4:80493068-80493087 | None:intergenic | 55.0% | |
| CAACGTGGATCCTCGTCGTA+CGG | + | chr1.4:80493692-80493711 | MS.gene26907:CDS | 55.0% | |
| CTTAACGGCAGCTCCGATTC+CGG | - | chr1.4:80492945-80492964 | None:intergenic | 55.0% | |
| ! | AGTTGACTCACCGTACGACG+AGG | - | chr1.4:80493705-80493724 | None:intergenic | 55.0% |
| ! | CTCCGATTCCGGTGTTGGAT+GGG | - | chr1.4:80492934-80492953 | None:intergenic | 55.0% |
| ! | TCCGGTGTTGGATGGGTACA+AGG | - | chr1.4:80492927-80492946 | None:intergenic | 55.0% |
| !! | CTTAGAGCGTTGGACAGGCT+TGG | + | chr1.4:80493534-80493553 | MS.gene26907:CDS | 55.0% |
| CGTACGACGAGGATCCACGT+TGG | - | chr1.4:80493694-80493713 | None:intergenic | 60.0% | |
| GAGGATCCACGTTGGCAGCT+TGG | - | chr1.4:80493686-80493705 | None:intergenic | 60.0% | |
| TAGTGCGCGCAAACCGGCAA+GGG | - | chr1.4:80493062-80493081 | None:intergenic | 60.0% | |
| TGCGATCCAAGCTGCCAACG+TGG | + | chr1.4:80493677-80493696 | MS.gene26907:CDS | 60.0% | |
| ! | GCTCCGATTCCGGTGTTGGA+TGG | - | chr1.4:80492935-80492954 | None:intergenic | 60.0% |
| !! | TCGTCGGGGCGGGTTGAATT+AGG | - | chr1.4:80493615-80493634 | None:intergenic | 60.0% |
| CTAGTGCGCGCAAACCGGCA+AGG | - | chr1.4:80493063-80493082 | None:intergenic | 65.0% | |
| GACAGGGAATTCGTCGGGGC+GGG | - | chr1.4:80493625-80493644 | None:intergenic | 65.0% | |
| GGACAGGGAATTCGTCGGGG+CGG | - | chr1.4:80493626-80493645 | None:intergenic | 65.0% | |
| GGCAGCTCCGATTCCGGTGT+TGG | - | chr1.4:80492939-80492958 | None:intergenic | 65.0% | |
| TCCCACGGTAGCACCCTTGC+CGG | + | chr1.4:80493046-80493065 | MS.gene26907:CDS | 65.0% | |
| !! | AACCGGCAAGGGTGCTACCG+TGG | - | chr1.4:80493051-80493070 | None:intergenic | 65.0% |
| !! | ACCGGCAAGGGTGCTACCGT+GGG | - | chr1.4:80493050-80493069 | None:intergenic | 65.0% |
| !! | CTTGCCGGTTTGCGCGCACT+AGG | + | chr1.4:80493061-80493080 | MS.gene26907:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 80492778 | 80494612 | 80492778 | ID=MS.gene26907 |
| chr1.4 | mRNA | 80492778 | 80494612 | 80492778 | ID=MS.gene26907.t1;Parent=MS.gene26907 |
| chr1.4 | exon | 80492778 | 80492823 | 80492778 | ID=MS.gene26907.t1.exon1;Parent=MS.gene26907.t1 |
| chr1.4 | CDS | 80492778 | 80492823 | 80492778 | ID=cds.MS.gene26907.t1;Parent=MS.gene26907.t1 |
| chr1.4 | exon | 80492912 | 80493113 | 80492912 | ID=MS.gene26907.t1.exon2;Parent=MS.gene26907.t1 |
| chr1.4 | CDS | 80492912 | 80493113 | 80492912 | ID=cds.MS.gene26907.t1;Parent=MS.gene26907.t1 |
| chr1.4 | exon | 80493321 | 80493408 | 80493321 | ID=MS.gene26907.t1.exon3;Parent=MS.gene26907.t1 |
| chr1.4 | CDS | 80493321 | 80493408 | 80493321 | ID=cds.MS.gene26907.t1;Parent=MS.gene26907.t1 |
| chr1.4 | exon | 80493504 | 80493713 | 80493504 | ID=MS.gene26907.t1.exon4;Parent=MS.gene26907.t1 |
| chr1.4 | CDS | 80493504 | 80493713 | 80493504 | ID=cds.MS.gene26907.t1;Parent=MS.gene26907.t1 |
| chr1.4 | exon | 80494145 | 80494210 | 80494145 | ID=MS.gene26907.t1.exon5;Parent=MS.gene26907.t1 |
| chr1.4 | CDS | 80494145 | 80494210 | 80494145 | ID=cds.MS.gene26907.t1;Parent=MS.gene26907.t1 |
| chr1.4 | exon | 80494430 | 80494612 | 80494430 | ID=MS.gene26907.t1.exon6;Parent=MS.gene26907.t1 |
| chr1.4 | CDS | 80494430 | 80494612 | 80494430 | ID=cds.MS.gene26907.t1;Parent=MS.gene26907.t1 |
| Gene Sequence |
| Protein sequence |
