Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80067.t1 | XP_003592405.1 | 98.5 | 264 | 4 | 0 | 1 | 264 | 1 | 264 | 3.40E-145 | 524.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80067.t1 | Q09893 | 31.6 | 190 | 116 | 4 | 13 | 199 | 8 | 186 | 5.7e-16 | 86.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80067.t1 | B7FKK9 | 98.5 | 264 | 4 | 0 | 1 | 264 | 1 | 264 | 2.5e-145 | 524.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene80067 | MS.gene50434 | PPI |
| MS.gene066714 | MS.gene80067 | PPI |
| MS.gene80067 | MS.gene99621 | PPI |
| MS.gene96863 | MS.gene80067 | PPI |
| MS.gene80067 | MS.gene46174 | PPI |
| MS.gene80067 | MS.gene78803 | PPI |
| MS.gene80067 | MS.gene055276 | PPI |
| MS.gene87483 | MS.gene80067 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80067.t1 | MTR_1g104610 | 98.485 | 264 | 4 | 0 | 1 | 264 | 1 | 264 | 0.0 | 535 |
| MS.gene80067.t1 | MTR_1g104610 | 93.607 | 219 | 14 | 0 | 1 | 219 | 1 | 219 | 1.79e-149 | 417 |
| MS.gene80067.t1 | MTR_4g021800 | 45.865 | 266 | 103 | 2 | 8 | 234 | 14 | 277 | 1.57e-78 | 239 |
| MS.gene80067.t1 | MTR_7g062150 | 45.018 | 271 | 105 | 2 | 10 | 238 | 15 | 283 | 1.79e-78 | 239 |
| MS.gene80067.t1 | MTR_1g085570 | 47.660 | 235 | 113 | 4 | 10 | 244 | 19 | 243 | 8.01e-78 | 236 |
| MS.gene80067.t1 | MTR_1g085570 | 47.660 | 235 | 113 | 4 | 10 | 244 | 11 | 235 | 8.41e-78 | 236 |
| MS.gene80067.t1 | MTR_1g085570 | 47.458 | 236 | 113 | 5 | 10 | 244 | 11 | 236 | 5.74e-76 | 231 |
| MS.gene80067.t1 | MTR_1g085570 | 52.551 | 196 | 87 | 2 | 10 | 205 | 11 | 200 | 1.61e-73 | 224 |
| MS.gene80067.t1 | MTR_2g097520 | 42.143 | 280 | 124 | 5 | 3 | 246 | 7 | 284 | 2.40e-73 | 226 |
| MS.gene80067.t1 | MTR_4g064380 | 43.952 | 248 | 114 | 4 | 10 | 234 | 15 | 260 | 2.15e-72 | 223 |
| MS.gene80067.t1 | MTR_4g021825 | 42.545 | 275 | 112 | 4 | 3 | 234 | 31 | 302 | 1.24e-71 | 223 |
| MS.gene80067.t1 | MTR_4g021800 | 45.299 | 234 | 87 | 2 | 40 | 234 | 1 | 232 | 5.74e-65 | 203 |
| MS.gene80067.t1 | MTR_4g021800 | 44.651 | 215 | 80 | 1 | 8 | 183 | 14 | 228 | 1.53e-59 | 189 |
| MS.gene80067.t1 | MTR_7g062150 | 44.444 | 216 | 78 | 1 | 10 | 183 | 15 | 230 | 1.83e-59 | 189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80067.t1 | AT2G32150 | 60.837 | 263 | 94 | 4 | 8 | 264 | 4 | 263 | 5.03e-111 | 321 |
| MS.gene80067.t1 | AT2G32150 | 69.347 | 199 | 60 | 1 | 8 | 205 | 4 | 202 | 9.27e-99 | 288 |
| MS.gene80067.t1 | AT2G32150 | 70.056 | 177 | 52 | 1 | 8 | 183 | 4 | 180 | 7.39e-88 | 259 |
| MS.gene80067.t1 | AT5G02230 | 46.743 | 261 | 112 | 3 | 1 | 236 | 1 | 259 | 1.93e-73 | 226 |
| MS.gene80067.t1 | AT5G02230 | 46.743 | 261 | 112 | 3 | 1 | 236 | 1 | 259 | 1.93e-73 | 226 |
| MS.gene80067.t1 | AT5G02230 | 46.743 | 261 | 112 | 3 | 1 | 236 | 38 | 296 | 1.09e-72 | 225 |
| MS.gene80067.t1 | AT5G59480 | 42.969 | 256 | 120 | 6 | 8 | 240 | 13 | 265 | 1.60e-70 | 218 |
| MS.gene80067.t1 | AT5G59480 | 42.969 | 256 | 120 | 6 | 8 | 240 | 13 | 265 | 1.60e-70 | 218 |
| MS.gene80067.t1 | AT5G59480 | 42.969 | 256 | 120 | 6 | 8 | 240 | 13 | 265 | 1.60e-70 | 218 |
| MS.gene80067.t1 | AT5G59480 | 42.969 | 256 | 120 | 6 | 8 | 240 | 13 | 265 | 1.60e-70 | 218 |
| MS.gene80067.t1 | AT5G59480 | 42.969 | 256 | 119 | 7 | 8 | 240 | 13 | 264 | 3.35e-68 | 213 |
| MS.gene80067.t1 | AT5G59490 | 44.898 | 245 | 126 | 3 | 1 | 238 | 1 | 243 | 4.73e-68 | 211 |
| MS.gene80067.t1 | AT3G62040 | 48.309 | 207 | 96 | 4 | 40 | 245 | 1 | 197 | 2.68e-66 | 205 |
| MS.gene80067.t1 | AT5G59490 | 47.642 | 212 | 104 | 2 | 1 | 205 | 1 | 212 | 9.58e-61 | 191 |
Find 75 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGTCGGGGCGGGTTGAATT+AGG | 0.220477 | 1.1:-74890601 | None:intergenic |
| CAGAAGTGATTCCTGAAATA+TGG | 0.228599 | 1.1:+74891489 | MS.gene80067:CDS |
| AACTCTGAGGGTGGAAGCTT+TGG | 0.284733 | 1.1:-74890001 | None:intergenic |
| ACTCTACTTCCCCATATTTC+AGG | 0.304394 | 1.1:-74891500 | None:intergenic |
| TACAATCTTCCTTTGGTTGA+TGG | 0.306805 | 1.1:-74890378 | None:intergenic |
| CTTAACGGCAGCTCCGATTC+CGG | 0.322496 | 1.1:-74889932 | None:intergenic |
| TTGTTAGATATTTACGAATT+CGG | 0.336620 | 1.1:+74890486 | MS.gene80067:intron |
| CGGGTTGAATTAGGTAGATT+CGG | 0.340373 | 1.1:-74890592 | None:intergenic |
| AATGGGTCTCCACACTGTTT+TGG | 0.343608 | 1.1:+74891181 | MS.gene80067:CDS |
| CATCATTGCGGGTAAAGAAA+TGG | 0.374288 | 1.1:+74891163 | MS.gene80067:CDS |
| AGGTTCCTTAACTGAATGTC+TGG | 0.381562 | 1.1:-74890347 | None:intergenic |
| ATCGCGCACAAACAGCGAAT+TGG | 0.385299 | 1.1:+74891544 | MS.gene80067:CDS |
| CCCTTCGACTGCATTATCTT+CGG | 0.406216 | 1.1:+74889792 | MS.gene80067:CDS |
| TTAGAGCGTTGGACAGGCTT+GGG | 0.407036 | 1.1:+74890524 | MS.gene80067:CDS |
| TCCCACGGTAGCACCCTTGC+CGG | 0.428799 | 1.1:+74890036 | MS.gene80067:CDS |
| AAGAGGACAGGGAATTCGTC+GGG | 0.430210 | 1.1:-74890616 | None:intergenic |
| ATGGACATACAATCTTCCTT+TGG | 0.430892 | 1.1:-74890385 | None:intergenic |
| CTTAGAGCGTTGGACAGGCT+TGG | 0.434451 | 1.1:+74890523 | MS.gene80067:CDS |
| TACCCATCCAACACCGGAAT+CGG | 0.434558 | 1.1:+74889919 | MS.gene80067:CDS |
| AGAAGTGATTCCTGAAATAT+GGG | 0.441987 | 1.1:+74891490 | MS.gene80067:CDS |
| TTTGGTTGATGGAACGTAAG+AGG | 0.450307 | 1.1:-74890367 | None:intergenic |
| GCTCCGATTCCGGTGTTGGA+TGG | 0.451001 | 1.1:-74889922 | None:intergenic |
| GACAGGGAATTCGTCGGGGC+GGG | 0.456541 | 1.1:-74890611 | None:intergenic |
| TAGTGCGCGCAAACCGGCAA+GGG | 0.457452 | 1.1:-74890049 | None:intergenic |
| GTTGGACAGGCTTGGGATAA+CGG | 0.457545 | 1.1:+74890531 | MS.gene80067:CDS |
| AACGAAGGTTTCAAGAGGAC+AGG | 0.466936 | 1.1:-74890628 | None:intergenic |
| ATCATTGCGGGTAAAGAAAT+GGG | 0.472132 | 1.1:+74891164 | MS.gene80067:CDS |
| GGCAGCTCCGATTCCGGTGT+TGG | 0.474489 | 1.1:-74889926 | None:intergenic |
| AGTGTTCGAAACATCATTGC+GGG | 0.477359 | 1.1:+74891152 | MS.gene80067:CDS |
| CTCCGATTCCGGTGTTGGAT+GGG | 0.477392 | 1.1:-74889921 | None:intergenic |
| GGGTTGAATTAGGTAGATTC+GGG | 0.478752 | 1.1:-74890591 | None:intergenic |
| TCAAACCAGACATTCAGTTA+AGG | 0.484093 | 1.1:+74890342 | MS.gene80067:CDS |
| CTAAGCGCATATACTGCTGT+TGG | 0.493343 | 1.1:+74891575 | MS.gene80067:CDS |
| CTTGCCGGTTTGCGCGCACT+AGG | 0.496427 | 1.1:+74890051 | MS.gene80067:CDS |
| TTCTTAGTTTCGTGCACGGA+AGG | 0.502187 | 1.1:+74890303 | MS.gene80067:intron |
| AAATATTGATCTCTTCCTCA+TGG | 0.505869 | 1.1:+74889957 | MS.gene80067:CDS |
| TGTCCTCTTGAAACCTTCGT+TGG | 0.512254 | 1.1:+74890630 | MS.gene80067:CDS |
| TCCGGTGTTGGATGGGTACA+AGG | 0.513354 | 1.1:-74889914 | None:intergenic |
| GAGGATCCACGTTGGCAGCT+TGG | 0.514928 | 1.1:-74890672 | None:intergenic |
| ATGCACTTAGAGCGTTGGAC+AGG | 0.519534 | 1.1:+74890518 | MS.gene80067:CDS |
| ATAGCCTAGTGCGCGCAAAC+CGG | 0.536055 | 1.1:-74890055 | None:intergenic |
| GATTCATGCACTTAGAGCGT+TGG | 0.537491 | 1.1:+74890513 | MS.gene80067:CDS |
| AGCTTGGATCGCAATCTTGA+AGG | 0.539852 | 1.1:-74890656 | None:intergenic |
| AGATATTTACGAATTCGGAC+AGG | 0.548364 | 1.1:+74890491 | MS.gene80067:intron |
| CAACGTGGATCCTCGTCGTA+CGG | 0.560427 | 1.1:+74890681 | MS.gene80067:CDS |
| TGAAATATGGGGAAGTAGAG+TGG | 0.562799 | 1.1:+74891502 | MS.gene80067:CDS |
| AACCGGCAAGGGTGCTACCG+TGG | 0.563938 | 1.1:-74890038 | None:intergenic |
| TCTGGTTTGATTAATTCGTA+AGG | 0.564418 | 1.1:-74890329 | None:intergenic |
| ACCGAAGATAATGCAGTCGA+AGG | 0.565357 | 1.1:-74889793 | None:intergenic |
| CTAGTGCGCGCAAACCGGCA+AGG | 0.567139 | 1.1:-74890050 | None:intergenic |
| CAAGAGGACAGGGAATTCGT+CGG | 0.575073 | 1.1:-74890617 | None:intergenic |
| CAATGTAGGGGACTATGTAG+TGG | 0.578865 | 1.1:+74891442 | MS.gene80067:CDS |
| TTTAAAGAGTTCAACTCTGA+GGG | 0.583777 | 1.1:-74890013 | None:intergenic |
| ACCGGCAAGGGTGCTACCGT+GGG | 0.588555 | 1.1:-74890037 | None:intergenic |
| TTACCTGTGGTATTCTTCTG+CGG | 0.592315 | 1.1:-74890085 | None:intergenic |
| GTTGAACTCTTTAAATCCCA+CGG | 0.595556 | 1.1:+74890021 | MS.gene80067:CDS |
| GTTCTTCTTAGTTTCGTGCA+CGG | 0.597143 | 1.1:+74890299 | MS.gene80067:intron |
| ATAATGCAGTCGAAGGGAGA+AGG | 0.598311 | 1.1:-74889786 | None:intergenic |
| ACCTTGTACCCATCCAACAC+CGG | 0.610346 | 1.1:+74889913 | MS.gene80067:CDS |
| AAAGAGTTCAACTCTGAGGG+TGG | 0.612715 | 1.1:-74890010 | None:intergenic |
| GGACAGGGAATTCGTCGGGG+CGG | 0.619508 | 1.1:-74890612 | None:intergenic |
| CCGAAGATAATGCAGTCGAA+GGG | 0.620542 | 1.1:-74889792 | None:intergenic |
| ATCTTGAAGGCATCCAACGA+AGG | 0.622873 | 1.1:-74890643 | None:intergenic |
| ATTTAAAGAGTTCAACTCTG+AGG | 0.633078 | 1.1:-74890014 | None:intergenic |
| ACGAAGGTTTCAAGAGGACA+GGG | 0.645747 | 1.1:-74890627 | None:intergenic |
| TCACCGCAGAAGAATACCAC+AGG | 0.655318 | 1.1:+74890082 | MS.gene80067:CDS |
| TGCGATCCAAGCTGCCAACG+TGG | 0.658698 | 1.1:+74890666 | MS.gene80067:CDS |
| CATCCAACGAAGGTTTCAAG+AGG | 0.662600 | 1.1:-74890633 | None:intergenic |
| AGTTGACTCACCGTACGACG+AGG | 0.671211 | 1.1:-74890691 | None:intergenic |
| TCTTACGTTCCATCAACCAA+AGG | 0.686021 | 1.1:+74890369 | MS.gene80067:CDS |
| AGAGGACAGGGAATTCGTCG+GGG | 0.686285 | 1.1:-74890615 | None:intergenic |
| CAGTGTTCGAAACATCATTG+CGG | 0.695527 | 1.1:+74891151 | MS.gene80067:CDS |
| GAAGTGATTCCTGAAATATG+GGG | 0.730085 | 1.1:+74891491 | MS.gene80067:CDS |
| GTAAAATTACCAAAACAGTG+TGG | 0.739988 | 1.1:-74891190 | None:intergenic |
| CGTACGACGAGGATCCACGT+TGG | 0.778989 | 1.1:-74890680 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTAAGATTAGAAAA+TGG | - | chr1.1:74890407-74890426 | None:intergenic | 10.0% |
| !!! | CTTGAAATTATTATTATTTT+TGG | + | chr1.1:74890430-74890449 | MS.gene80067:intron | 10.0% |
| !! | ATTAGAGAAAATGATATTAA+TGG | - | chr1.1:74889863-74889882 | None:intergenic | 15.0% |
| !! | TGTCAAATTCTTTATAATTA+TGG | + | chr1.1:74890863-74890882 | MS.gene80067:intron | 15.0% |
| !!! | TTGGTATATATTTCTAATTT+TGG | + | chr1.1:74890449-74890468 | MS.gene80067:intron | 15.0% |
| !! | AGTTAATTGTTAGTTAACTT+TGG | + | chr1.1:74890950-74890969 | MS.gene80067:intron | 20.0% |
| !! | ATCATACATACTACTTAATT+TGG | - | chr1.1:74890264-74890283 | None:intergenic | 20.0% |
| !! | ATTTATTGATCAAACAGATT+TGG | + | chr1.1:74889885-74889904 | MS.gene80067:intron | 20.0% |
| !! | TTGCAAGTAAATATTAACTT+TGG | - | chr1.1:74891226-74891245 | None:intergenic | 20.0% |
| !! | TTGTTAGATATTTACGAATT+CGG | + | chr1.1:74890486-74890505 | MS.gene80067:intron | 20.0% |
| !!! | GAGATCAATATTTTTCTTAA+CGG | - | chr1.1:74889950-74889969 | None:intergenic | 20.0% |
| !!! | TAAATATTAACTTTGGAGTT+TGG | - | chr1.1:74891219-74891238 | None:intergenic | 20.0% |
| !!! | TTATAATTATGGTGTTGATT+TGG | + | chr1.1:74890874-74890893 | MS.gene80067:intron | 20.0% |
| ! | ATTAAGTTTATGCCAAAATC+TGG | - | chr1.1:74890190-74890209 | None:intergenic | 25.0% |
| ! | GAGAAAATGATATTAATGGA+AGG | - | chr1.1:74889859-74889878 | None:intergenic | 25.0% |
| ! | GTATGTATATGTGTTTATGT+AGG | + | chr1.1:74891400-74891419 | MS.gene80067:intron | 25.0% |
| ! | TATATGTGTTTATGTAGGTT+GGG | + | chr1.1:74891405-74891424 | MS.gene80067:intron | 25.0% |
| ! | TTAAGTTTATGCCAAAATCT+GGG | - | chr1.1:74890189-74890208 | None:intergenic | 25.0% |
| !! | TTTGGAGTTGGATTAAATAA+TGG | + | chr1.1:74890968-74890987 | MS.gene80067:intron | 25.0% |
| AAATATTGATCTCTTCCTCA+TGG | + | chr1.1:74889957-74889976 | MS.gene80067:CDS | 30.0% | |
| AATGGAAGGAGTTTGTAAAT+TGG | - | chr1.1:74889845-74889864 | None:intergenic | 30.0% | |
| AGAAGTGATTCCTGAAATAT+GGG | + | chr1.1:74891490-74891509 | MS.gene80067:CDS | 30.0% | |
| AGACAGTGAAAAACAATGTA+GGG | + | chr1.1:74891429-74891448 | MS.gene80067:CDS | 30.0% | |
| AGCAAACAAACGAACAAATT+AGG | - | chr1.1:74890116-74890135 | None:intergenic | 30.0% | |
| ATATGTGTTTATGTAGGTTG+GGG | + | chr1.1:74891406-74891425 | MS.gene80067:intron | 30.0% | |
| ATTTAAAGAGTTCAACTCTG+AGG | - | chr1.1:74890017-74890036 | None:intergenic | 30.0% | |
| GTAAAATTACCAAAACAGTG+TGG | - | chr1.1:74891193-74891212 | None:intergenic | 30.0% | |
| GTATATGTGTTTATGTAGGT+TGG | + | chr1.1:74891404-74891423 | MS.gene80067:intron | 30.0% | |
| TCAATTAAATTAGTGCTGTC+TGG | - | chr1.1:74891336-74891355 | None:intergenic | 30.0% | |
| TGCGACTATAACTTCATAAA+AGG | - | chr1.1:74891045-74891064 | None:intergenic | 30.0% | |
| TTTAAAGAGTTCAACTCTGA+GGG | - | chr1.1:74890016-74890035 | None:intergenic | 30.0% | |
| ! | GAAAAAGAATTGAGTTGTTG+AGG | + | chr1.1:74890907-74890926 | MS.gene80067:intron | 30.0% |
| ! | TCTGGTTTGATTAATTCGTA+AGG | - | chr1.1:74890332-74890351 | None:intergenic | 30.0% |
| !! | TATTAACTTTGGAGTTTGGT+CGG | - | chr1.1:74891215-74891234 | None:intergenic | 30.0% |
| !! | TTGTTAGTTAACTTTGGAGT+TGG | + | chr1.1:74890956-74890975 | MS.gene80067:intron | 30.0% |
| !!! | TCTTGTTTTGCAGTTGTTTT+TGG | + | chr1.1:74891124-74891143 | MS.gene80067:intron | 30.0% |
| AGATATTTACGAATTCGGAC+AGG | + | chr1.1:74890491-74890510 | MS.gene80067:intron | 35.0% | |
| ATCATTGCGGGTAAAGAAAT+GGG | + | chr1.1:74891164-74891183 | MS.gene80067:CDS | 35.0% | |
| ATGGACATACAATCTTCCTT+TGG | - | chr1.1:74890388-74890407 | None:intergenic | 35.0% | |
| CAGAAGTGATTCCTGAAATA+TGG | + | chr1.1:74891489-74891508 | MS.gene80067:CDS | 35.0% | |
| GAAGTGATTCCTGAAATATG+GGG | + | chr1.1:74891491-74891510 | MS.gene80067:CDS | 35.0% | |
| GACAGTGAAAAACAATGTAG+GGG | + | chr1.1:74891430-74891449 | MS.gene80067:CDS | 35.0% | |
| GAGACAGTGAAAAACAATGT+AGG | + | chr1.1:74891428-74891447 | MS.gene80067:CDS | 35.0% | |
| GTGCTACACTCTATATCTTA+TGG | + | chr1.1:74890159-74890178 | MS.gene80067:intron | 35.0% | |
| GTTGAACTCTTTAAATCCCA+CGG | + | chr1.1:74890021-74890040 | MS.gene80067:CDS | 35.0% | |
| TACAATCTTCCTTTGGTTGA+TGG | - | chr1.1:74890381-74890400 | None:intergenic | 35.0% | |
| TCAAACCAGACATTCAGTTA+AGG | + | chr1.1:74890342-74890361 | MS.gene80067:CDS | 35.0% | |
| ! | AGAAACCACATTTTTCCATG+AGG | - | chr1.1:74889975-74889994 | None:intergenic | 35.0% |
| !!! | GCACGATTTTGAAATATCCA+CGG | - | chr1.1:74890143-74890162 | None:intergenic | 35.0% |
| AAATTAGGCCAAGTTACCTG+TGG | - | chr1.1:74890101-74890120 | None:intergenic | 40.0% | |
| ACTCTACTTCCCCATATTTC+AGG | - | chr1.1:74891503-74891522 | None:intergenic | 40.0% | |
| AGGTTCCTTAACTGAATGTC+TGG | - | chr1.1:74890350-74890369 | None:intergenic | 40.0% | |
| AGTGTTCGAAACATCATTGC+GGG | + | chr1.1:74891152-74891171 | MS.gene80067:CDS | 40.0% | |
| CAGTGTTCGAAACATCATTG+CGG | + | chr1.1:74891151-74891170 | MS.gene80067:CDS | 40.0% | |
| CATAACGACTTGTCGAATGA+TGG | + | chr1.1:74890726-74890745 | MS.gene80067:intron | 40.0% | |
| CATCATTGCGGGTAAAGAAA+TGG | + | chr1.1:74891163-74891182 | MS.gene80067:CDS | 40.0% | |
| CTCTTCCTCATGGAAAAATG+TGG | + | chr1.1:74889967-74889986 | MS.gene80067:CDS | 40.0% | |
| GAAGAATACCACAGGTAACT+TGG | + | chr1.1:74890090-74890109 | MS.gene80067:intron | 40.0% | |
| GGGTTGAATTAGGTAGATTC+GGG | - | chr1.1:74890594-74890613 | None:intergenic | 40.0% | |
| GTTCTTCTTAGTTTCGTGCA+CGG | + | chr1.1:74890299-74890318 | MS.gene80067:intron | 40.0% | |
| TCTTACGTTCCATCAACCAA+AGG | + | chr1.1:74890369-74890388 | MS.gene80067:CDS | 40.0% | |
| TGAAATATGGGGAAGTAGAG+TGG | + | chr1.1:74891502-74891521 | MS.gene80067:CDS | 40.0% | |
| TTACCTGTGGTATTCTTCTG+CGG | - | chr1.1:74890088-74890107 | None:intergenic | 40.0% | |
| ! | CGGGTTGAATTAGGTAGATT+CGG | - | chr1.1:74890595-74890614 | None:intergenic | 40.0% |
| ! | CTTATGGATCACCCAGATTT+TGG | + | chr1.1:74890175-74890194 | MS.gene80067:intron | 40.0% |
| !! | TTTGGTTGATGGAACGTAAG+AGG | - | chr1.1:74890370-74890389 | None:intergenic | 40.0% |
| AACGAAGGTTTCAAGAGGAC+AGG | - | chr1.1:74890631-74890650 | None:intergenic | 45.0% | |
| ACCGAAGATAATGCAGTCGA+AGG | - | chr1.1:74889796-74889815 | None:intergenic | 45.0% | |
| ACGAAGGTTTCAAGAGGACA+GGG | - | chr1.1:74890630-74890649 | None:intergenic | 45.0% | |
| AGCTTGGATCGCAATCTTGA+AGG | - | chr1.1:74890659-74890678 | None:intergenic | 45.0% | |
| ATAATGCAGTCGAAGGGAGA+AGG | - | chr1.1:74889789-74889808 | None:intergenic | 45.0% | |
| CAATGTAGGGGACTATGTAG+TGG | + | chr1.1:74891442-74891461 | MS.gene80067:CDS | 45.0% | |
| CATCCAACGAAGGTTTCAAG+AGG | - | chr1.1:74890636-74890655 | None:intergenic | 45.0% | |
| CCCTTCGACTGCATTATCTT+CGG | + | chr1.1:74889792-74889811 | MS.gene80067:CDS | 45.0% | |
| CCGAAGATAATGCAGTCGAA+GGG | - | chr1.1:74889795-74889814 | None:intergenic | 45.0% | |
| CTAAGCGCATATACTGCTGT+TGG | + | chr1.1:74891575-74891594 | MS.gene80067:CDS | 45.0% | |
| GATTCATGCACTTAGAGCGT+TGG | + | chr1.1:74890513-74890532 | MS.gene80067:CDS | 45.0% | |
| TCGTTTGTTTGCTTTCACCG+TGG | + | chr1.1:74890123-74890142 | MS.gene80067:intron | 45.0% | |
| TGTCCTCTTGAAACCTTCGT+TGG | + | chr1.1:74890630-74890649 | MS.gene80067:CDS | 45.0% | |
| TTCTTAGTTTCGTGCACGGA+AGG | + | chr1.1:74890303-74890322 | MS.gene80067:intron | 45.0% | |
| ! | AAAGAGTTCAACTCTGAGGG+TGG | - | chr1.1:74890013-74890032 | None:intergenic | 45.0% |
| ! | AATGGGTCTCCACACTGTTT+TGG | + | chr1.1:74891181-74891200 | MS.gene80067:CDS | 45.0% |
| !! | ATCTTGAAGGCATCCAACGA+AGG | - | chr1.1:74890646-74890665 | None:intergenic | 45.0% |
| !! | ACTATTATTAAAAAAAAAAA+TGG | + | chr1.1:74890996-74891015 | MS.gene80067:intron | 5.0% |
| AAGAGGACAGGGAATTCGTC+GGG | - | chr1.1:74890619-74890638 | None:intergenic | 50.0% | |
| ACCTTGTACCCATCCAACAC+CGG | + | chr1.1:74889913-74889932 | MS.gene80067:CDS | 50.0% | |
| ATCGCGCACAAACAGCGAAT+TGG | + | chr1.1:74891544-74891563 | MS.gene80067:CDS | 50.0% | |
| CAAGAGGACAGGGAATTCGT+CGG | - | chr1.1:74890620-74890639 | None:intergenic | 50.0% | |
| GTTGGACAGGCTTGGGATAA+CGG | + | chr1.1:74890531-74890550 | MS.gene80067:CDS | 50.0% | |
| TACCCATCCAACACCGGAAT+CGG | + | chr1.1:74889919-74889938 | MS.gene80067:CDS | 50.0% | |
| TCACCGCAGAAGAATACCAC+AGG | + | chr1.1:74890082-74890101 | MS.gene80067:CDS | 50.0% | |
| ! | AACTCTGAGGGTGGAAGCTT+TGG | - | chr1.1:74890004-74890023 | None:intergenic | 50.0% |
| !! | ATGCACTTAGAGCGTTGGAC+AGG | + | chr1.1:74890518-74890537 | MS.gene80067:CDS | 50.0% |
| !! | TTAGAGCGTTGGACAGGCTT+GGG | + | chr1.1:74890524-74890543 | MS.gene80067:CDS | 50.0% |
| AGAGGACAGGGAATTCGTCG+GGG | - | chr1.1:74890618-74890637 | None:intergenic | 55.0% | |
| ATAGCCTAGTGCGCGCAAAC+CGG | - | chr1.1:74890058-74890077 | None:intergenic | 55.0% | |
| CAACGTGGATCCTCGTCGTA+CGG | + | chr1.1:74890681-74890700 | MS.gene80067:CDS | 55.0% | |
| CTTAACGGCAGCTCCGATTC+CGG | - | chr1.1:74889935-74889954 | None:intergenic | 55.0% | |
| ! | AGTTGACTCACCGTACGACG+AGG | - | chr1.1:74890694-74890713 | None:intergenic | 55.0% |
| ! | CTCCGATTCCGGTGTTGGAT+GGG | - | chr1.1:74889924-74889943 | None:intergenic | 55.0% |
| ! | TCCGGTGTTGGATGGGTACA+AGG | - | chr1.1:74889917-74889936 | None:intergenic | 55.0% |
| !! | CTTAGAGCGTTGGACAGGCT+TGG | + | chr1.1:74890523-74890542 | MS.gene80067:CDS | 55.0% |
| CGTACGACGAGGATCCACGT+TGG | - | chr1.1:74890683-74890702 | None:intergenic | 60.0% | |
| GAGGATCCACGTTGGCAGCT+TGG | - | chr1.1:74890675-74890694 | None:intergenic | 60.0% | |
| TAGTGCGCGCAAACCGGCAA+GGG | - | chr1.1:74890052-74890071 | None:intergenic | 60.0% | |
| TGCGATCCAAGCTGCCAACG+TGG | + | chr1.1:74890666-74890685 | MS.gene80067:CDS | 60.0% | |
| ! | GCTCCGATTCCGGTGTTGGA+TGG | - | chr1.1:74889925-74889944 | None:intergenic | 60.0% |
| !! | TCGTCGGGGCGGGTTGAATT+AGG | - | chr1.1:74890604-74890623 | None:intergenic | 60.0% |
| CTAGTGCGCGCAAACCGGCA+AGG | - | chr1.1:74890053-74890072 | None:intergenic | 65.0% | |
| GACAGGGAATTCGTCGGGGC+GGG | - | chr1.1:74890614-74890633 | None:intergenic | 65.0% | |
| GGACAGGGAATTCGTCGGGG+CGG | - | chr1.1:74890615-74890634 | None:intergenic | 65.0% | |
| GGCAGCTCCGATTCCGGTGT+TGG | - | chr1.1:74889929-74889948 | None:intergenic | 65.0% | |
| TCCCACGGTAGCACCCTTGC+CGG | + | chr1.1:74890036-74890055 | MS.gene80067:CDS | 65.0% | |
| !! | AACCGGCAAGGGTGCTACCG+TGG | - | chr1.1:74890041-74890060 | None:intergenic | 65.0% |
| !! | ACCGGCAAGGGTGCTACCGT+GGG | - | chr1.1:74890040-74890059 | None:intergenic | 65.0% |
| !! | CTTGCCGGTTTGCGCGCACT+AGG | + | chr1.1:74890051-74890070 | MS.gene80067:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 74889768 | 74891604 | 74889768 | ID=MS.gene80067 |
| chr1.1 | mRNA | 74889768 | 74891604 | 74889768 | ID=MS.gene80067.t1;Parent=MS.gene80067 |
| chr1.1 | exon | 74889768 | 74889813 | 74889768 | ID=MS.gene80067.t1.exon1;Parent=MS.gene80067.t1 |
| chr1.1 | CDS | 74889768 | 74889813 | 74889768 | ID=cds.MS.gene80067.t1;Parent=MS.gene80067.t1 |
| chr1.1 | exon | 74889902 | 74890103 | 74889902 | ID=MS.gene80067.t1.exon2;Parent=MS.gene80067.t1 |
| chr1.1 | CDS | 74889902 | 74890103 | 74889902 | ID=cds.MS.gene80067.t1;Parent=MS.gene80067.t1 |
| chr1.1 | exon | 74890310 | 74890397 | 74890310 | ID=MS.gene80067.t1.exon3;Parent=MS.gene80067.t1 |
| chr1.1 | CDS | 74890310 | 74890397 | 74890310 | ID=cds.MS.gene80067.t1;Parent=MS.gene80067.t1 |
| chr1.1 | exon | 74890493 | 74890702 | 74890493 | ID=MS.gene80067.t1.exon4;Parent=MS.gene80067.t1 |
| chr1.1 | CDS | 74890493 | 74890702 | 74890493 | ID=cds.MS.gene80067.t1;Parent=MS.gene80067.t1 |
| chr1.1 | exon | 74891137 | 74891202 | 74891137 | ID=MS.gene80067.t1.exon5;Parent=MS.gene80067.t1 |
| chr1.1 | CDS | 74891137 | 74891202 | 74891137 | ID=cds.MS.gene80067.t1;Parent=MS.gene80067.t1 |
| chr1.1 | exon | 74891422 | 74891604 | 74891422 | ID=MS.gene80067.t1.exon6;Parent=MS.gene80067.t1 |
| chr1.1 | CDS | 74891422 | 74891604 | 74891422 | ID=cds.MS.gene80067.t1;Parent=MS.gene80067.t1 |
| Gene Sequence |
| Protein sequence |
