Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067157.t1 | KEH35434.1 | 96.7 | 151 | 5 | 0 | 1 | 151 | 20 | 170 | 1.30E-77 | 298.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067157.t1 | A0A072V0A8 | 96.7 | 151 | 5 | 0 | 1 | 151 | 20 | 170 | 9.6e-78 | 298.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051687 | MS.gene067157 | -0.819071 | 1.41E-52 | -1.69E-46 |
| MS.gene051746 | MS.gene067157 | -0.827563 | 1.46E-54 | -1.69E-46 |
| MS.gene051748 | MS.gene067157 | -0.811055 | 8.48E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene067157 | -0.800385 | 1.48E-48 | -1.69E-46 |
| MS.gene056069 | MS.gene067157 | 0.800532 | 1.38E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATTGCTGTTAAGAATTA+TGG | 0.144268 | 3.4:+82915349 | MS.gene067157:CDS |
| AACCCAAACTGGACCAAATT+TGG | 0.146669 | 3.4:+82915017 | MS.gene067157:CDS |
| AGCAACTTTCAATTTGATTT+TGG | 0.153995 | 3.4:+82914957 | MS.gene067157:CDS |
| GCATTGGCATATTTCCTTAA+TGG | 0.192152 | 3.4:+82916767 | MS.gene067157:CDS |
| TGGATTGGAGAGGAAAATTT+TGG | 0.234442 | 3.4:+82914977 | MS.gene067157:CDS |
| TGCAGTAGGATTGGGTATTA+AGG | 0.261399 | 3.4:+82914304 | None:intergenic |
| ACCCCAAATTTGGTCCAGTT+TGG | 0.293884 | 3.4:-82915020 | None:intergenic |
| CCCCAAATTTGGTCCAGTTT+GGG | 0.293983 | 3.4:-82915019 | None:intergenic |
| AATCTTATGATGAGCCATTA+AGG | 0.294555 | 3.4:-82916781 | None:intergenic |
| ACCCAAACTGGACCAAATTT+GGG | 0.315467 | 3.4:+82915018 | MS.gene067157:CDS |
| CCATAATTCTTAACAGCAAT+TGG | 0.323280 | 3.4:-82915349 | None:intergenic |
| GATCTTATATTCCGGTTTGA+TGG | 0.373999 | 3.4:-82914330 | None:intergenic |
| ATACACCCTTCTGCATGAAA+TGG | 0.413329 | 3.4:+82916685 | MS.gene067157:CDS |
| GACAGAGAACATACTTTGGT+TGG | 0.417347 | 3.4:-82915379 | None:intergenic |
| CAGAGAAGGAAAACCCAAAC+TGG | 0.417760 | 3.4:+82915006 | MS.gene067157:CDS |
| CGTGGAATATCTCCCACATT+TGG | 0.418255 | 3.4:-82914933 | None:intergenic |
| GCTATATATTTGTTCACAAT+GGG | 0.422820 | 3.4:-82915301 | None:intergenic |
| CCCACATTTGGTAGCAAATG+AGG | 0.464243 | 3.4:-82914921 | None:intergenic |
| TCAAATTGAAAGTTGCTTCG+TGG | 0.468559 | 3.4:-82914951 | None:intergenic |
| GGCGGTGCGATCTTATATTC+CGG | 0.475988 | 3.4:-82914338 | None:intergenic |
| TACACCCTTCTGCATGAAAT+GGG | 0.476910 | 3.4:+82916686 | MS.gene067157:CDS |
| GGCTATATATTTGTTCACAA+TGG | 0.484861 | 3.4:-82915302 | None:intergenic |
| GCCTCATTTGCTACCAAATG+TGG | 0.486271 | 3.4:+82914920 | MS.gene067157:intron |
| CGATGATGTATCAGAAGCCT+TGG | 0.505994 | 3.4:-82915057 | None:intergenic |
| GATGTATCAGAAGCCTTGGT+TGG | 0.511864 | 3.4:-82915053 | None:intergenic |
| TATTAAGGTTGCCATCAAAC+CGG | 0.518688 | 3.4:+82914319 | MS.gene067157:CDS |
| AAAATCCCATTTCATGCAGA+AGG | 0.534230 | 3.4:-82916691 | None:intergenic |
| GAAGGTTCAAGAATTTGTCA+AGG | 0.564438 | 3.4:+82916661 | MS.gene067157:intron |
| TGTGAACAAATATATAGCCA+TGG | 0.566174 | 3.4:+82915306 | MS.gene067157:CDS |
| GGAATATAAGATCGCACCGC+CGG | 0.569586 | 3.4:+82914340 | MS.gene067157:CDS |
| TGATACATCATCGTCGTCAA+AGG | 0.571313 | 3.4:+82915067 | MS.gene067157:CDS |
| AAGGTTCAAGAATTTGTCAA+GGG | 0.577160 | 3.4:+82916662 | MS.gene067157:intron |
| CAGCAATTGGAACAACCTCT+CGG | 0.588372 | 3.4:-82915336 | None:intergenic |
| AACCTCTCGGCTGAGTCCCA+TGG | 0.590164 | 3.4:-82915323 | None:intergenic |
| GTGAACAAATATATAGCCAT+GGG | 0.593445 | 3.4:+82915307 | MS.gene067157:CDS |
| ATCATTGTCATACATAAGCA+AGG | 0.605733 | 3.4:-82916735 | None:intergenic |
| CAATGATACAGACAAGGCAT+TGG | 0.625236 | 3.4:+82916751 | MS.gene067157:CDS |
| CCTCATTTGCTACCAAATGT+GGG | 0.632935 | 3.4:+82914921 | MS.gene067157:CDS |
| CCCAAACTGGACCAAATTTG+GGG | 0.636289 | 3.4:+82915019 | MS.gene067157:CDS |
| GGTAGAAAATCTTCCAACCA+AGG | 0.640328 | 3.4:+82915040 | MS.gene067157:CDS |
| AAATCCCATTTCATGCAGAA+GGG | 0.642353 | 3.4:-82916690 | None:intergenic |
| AGCCATGGGACTCAGCCGAG+AGG | 0.725658 | 3.4:+82915321 | MS.gene067157:CDS |
| GTATGACAATGATACAGACA+AGG | 0.732064 | 3.4:+82916745 | MS.gene067157:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAATTTAGAATTGA+TGG | + | chr3.4:82914488-82914507 | MS.gene067157:intron | 10.0% |
| !!! | AAAAAAAATTTAGAATTGAT+GGG | + | chr3.4:82914489-82914508 | MS.gene067157:intron | 10.0% |
| !!! | TATTTTTTTATATATGATTG+TGG | + | chr3.4:82916308-82916327 | MS.gene067157:intron | 10.0% |
| !! | AACTTATTATTAAAAGAATG+AGG | + | chr3.4:82914721-82914740 | MS.gene067157:intron | 15.0% |
| !! | ACTTATTATTAAAAGAATGA+GGG | + | chr3.4:82914722-82914741 | MS.gene067157:intron | 15.0% |
| !!! | AAAAAAATTTAGAATTGATG+GGG | + | chr3.4:82914490-82914509 | MS.gene067157:intron | 15.0% |
| !!! | AATTTACTGGTTTTTTTTAT+CGG | + | chr3.4:82914852-82914871 | MS.gene067157:intron | 15.0% |
| !! | AATAAACTGTTTACTTGTAT+GGG | - | chr3.4:82915852-82915871 | None:intergenic | 20.0% |
| !! | ATAAGTTCACAGTAATAATT+TGG | - | chr3.4:82915580-82915599 | None:intergenic | 20.0% |
| !! | ATCAGAAAAACAAATTAATC+AGG | - | chr3.4:82916623-82916642 | None:intergenic | 20.0% |
| !! | CAAATGTATTATTCATTTGA+AGG | + | chr3.4:82916643-82916662 | MS.gene067157:intron | 20.0% |
| !! | GAAACTATATTATCTTTAGT+TGG | - | chr3.4:82916517-82916536 | None:intergenic | 20.0% |
| !! | TAATATGAAACTATATTTGC+AGG | + | chr3.4:82915264-82915283 | MS.gene067157:intron | 20.0% |
| !! | TACTCCTCAAAATAAAATTA+GGG | + | chr3.4:82914446-82914465 | MS.gene067157:intron | 20.0% |
| !! | TTACTCCTCAAAATAAAATT+AGG | + | chr3.4:82914445-82914464 | MS.gene067157:intron | 20.0% |
| !! | TTTATATATGATTGTGGTTT+GGG | + | chr3.4:82916314-82916333 | MS.gene067157:intron | 20.0% |
| !!! | AAGTAATTACTGATTATAAC+TGG | - | chr3.4:82915922-82915941 | None:intergenic | 20.0% |
| !!! | AATTGATTTCTGTCAATAAT+AGG | - | chr3.4:82915777-82915796 | None:intergenic | 20.0% |
| !!! | AGTAATTACTGATTATAACT+GGG | - | chr3.4:82915921-82915940 | None:intergenic | 20.0% |
| !!! | ATAGTTAAATATGACTTTTG+AGG | + | chr3.4:82914879-82914898 | MS.gene067157:intron | 20.0% |
| !!! | ATTTTCAAATATTGATTTCG+TGG | + | chr3.4:82916472-82916491 | MS.gene067157:intron | 20.0% |
| !!! | TAGTTAAATATGACTTTTGA+GGG | + | chr3.4:82914880-82914899 | MS.gene067157:intron | 20.0% |
| !!! | TTCACTTTGTCATTTTTATA+AGG | + | chr3.4:82916013-82916032 | MS.gene067157:intron | 20.0% |
| !!! | TTTTACTTTTTGATCCAAAA+TGG | + | chr3.4:82915806-82915825 | MS.gene067157:intron | 20.0% |
| !!! | TTTTATATATGATTGTGGTT+TGG | + | chr3.4:82916313-82916332 | MS.gene067157:intron | 20.0% |
| ! | AAACCCAAACTAGAATAAAT+CGG | - | chr3.4:82915122-82915141 | None:intergenic | 25.0% |
| ! | ATAAGTTAAATTTAAGCACG+AGG | - | chr3.4:82914708-82914727 | None:intergenic | 25.0% |
| ! | ATCATGTCCATTATAAGTTA+CGG | - | chr3.4:82915406-82915425 | None:intergenic | 25.0% |
| ! | ATTTAGCTGATCAAAATATC+TGG | - | chr3.4:82916348-82916367 | None:intergenic | 25.0% |
| ! | CAATAAACTGTTTACTTGTA+TGG | - | chr3.4:82915853-82915872 | None:intergenic | 25.0% |
| ! | GCGTAATATCTTAAACTTTA+GGG | - | chr3.4:82914610-82914629 | None:intergenic | 25.0% |
| ! | GCTATATATTTGTTCACAAT+GGG | - | chr3.4:82915304-82915323 | None:intergenic | 25.0% |
| ! | TAAGTTAAATTTAAGCACGA+GGG | - | chr3.4:82914707-82914726 | None:intergenic | 25.0% |
| ! | TAATGTTTAACAGCTGAATA+CGG | - | chr3.4:82916061-82916080 | None:intergenic | 25.0% |
| ! | TTCAGAATTCAGAAGAATAA+CGG | - | chr3.4:82914391-82914410 | None:intergenic | 25.0% |
| !! | AGTTAAATATGACTTTTGAG+GGG | + | chr3.4:82914881-82914900 | MS.gene067157:intron | 25.0% |
| !! | ATATCTTAAACTTTAGGGAT+AGG | - | chr3.4:82914605-82914624 | None:intergenic | 25.0% |
| !! | GACAGAAATCAATTTTCAAT+AGG | + | chr3.4:82915783-82915802 | MS.gene067157:intron | 25.0% |
| !! | GTTGAAAAATTCTTCCATTT+TGG | - | chr3.4:82915823-82915842 | None:intergenic | 25.0% |
| !! | TCTACTTAGATTTCATTTTG+TGG | + | chr3.4:82914538-82914557 | MS.gene067157:intron | 25.0% |
| !!! | AGCAACTTTCAATTTGATTT+TGG | + | chr3.4:82914957-82914976 | MS.gene067157:CDS | 25.0% |
| !!! | CTTTCAATTTGATTTTGGAT+TGG | + | chr3.4:82914962-82914981 | MS.gene067157:CDS | 25.0% |
| !!! | TTTATTCTAGTTTGGGTTTA+TGG | + | chr3.4:82915123-82915142 | MS.gene067157:intron | 25.0% |
| AAGGTTCAAGAATTTGTCAA+GGG | + | chr3.4:82916662-82916681 | MS.gene067157:intron | 30.0% | |
| AGTTCACAGTAATAATTTGG+AGG | - | chr3.4:82915577-82915596 | None:intergenic | 30.0% | |
| ATCATTGTCATACATAAGCA+AGG | - | chr3.4:82916738-82916757 | None:intergenic | 30.0% | |
| CCATAATTCTTAACAGCAAT+TGG | - | chr3.4:82915352-82915371 | None:intergenic | 30.0% | |
| CGCGTAATATCTTAAACTTT+AGG | - | chr3.4:82914611-82914630 | None:intergenic | 30.0% | |
| GAAAGTTACAACGCATTAAT+GGG | + | chr3.4:82916406-82916425 | MS.gene067157:intron | 30.0% | |
| GGCTATATATTTGTTCACAA+TGG | - | chr3.4:82915305-82915324 | None:intergenic | 30.0% | |
| GTGAACAAATATATAGCCAT+GGG | + | chr3.4:82915307-82915326 | MS.gene067157:CDS | 30.0% | |
| GTGAGAATCCAATTTAGATA+CGG | + | chr3.4:82916248-82916267 | MS.gene067157:intron | 30.0% | |
| TGAAAGTTACAACGCATTAA+TGG | + | chr3.4:82916405-82916424 | MS.gene067157:intron | 30.0% | |
| TGAATTATTCGATCTTTGCA+TGG | - | chr3.4:82915511-82915530 | None:intergenic | 30.0% | |
| TGTGAACAAATATATAGCCA+TGG | + | chr3.4:82915306-82915325 | MS.gene067157:CDS | 30.0% | |
| TTAAAAGAATGAGGGTGATT+CGG | + | chr3.4:82914730-82914749 | MS.gene067157:intron | 30.0% | |
| ! | AAGATTTTCTACCCCAAATT+TGG | - | chr3.4:82915033-82915052 | None:intergenic | 30.0% |
| ! | AGATTAGTTGTTTCATGACA+TGG | - | chr3.4:82914797-82914816 | None:intergenic | 30.0% |
| ! | AGTTCCGATTTATTCTAGTT+TGG | + | chr3.4:82915115-82915134 | MS.gene067157:intron | 30.0% |
| ! | CCAATTGCTGTTAAGAATTA+TGG | + | chr3.4:82915349-82915368 | MS.gene067157:CDS | 30.0% |
| ! | TAACTTTCAGTATGGCTTTA+AGG | - | chr3.4:82916394-82916413 | None:intergenic | 30.0% |
| ! | TCTGAAATGCTTATGCTATT+AGG | + | chr3.4:82914814-82914833 | MS.gene067157:intron | 30.0% |
| ! | TTTTCAAACATGCTAGAAAG+TGG | + | chr3.4:82915622-82915641 | MS.gene067157:intron | 30.0% |
| !! | AATTTGATTTTGGATTGGAG+AGG | + | chr3.4:82914967-82914986 | MS.gene067157:CDS | 30.0% |
| !! | GTTCCGATTTATTCTAGTTT+GGG | + | chr3.4:82915116-82915135 | MS.gene067157:intron | 30.0% |
| !!! | AGCACCCTAATTTTATTTTG+AGG | - | chr3.4:82914453-82914472 | None:intergenic | 30.0% |
| AAAACATGATTTCCAGTTGC+TGG | - | chr3.4:82916283-82916302 | None:intergenic | 35.0% | |
| AAAATCCCATTTCATGCAGA+AGG | - | chr3.4:82916694-82916713 | None:intergenic | 35.0% | |
| AAACCAGTAAATTGTCTCCA+CGG | - | chr3.4:82914845-82914864 | None:intergenic | 35.0% | |
| AAATCCCATTTCATGCAGAA+GGG | - | chr3.4:82916693-82916712 | None:intergenic | 35.0% | |
| AAGAGCCATGTAATTAGAAC+TGG | - | chr3.4:82915981-82916000 | None:intergenic | 35.0% | |
| ACGAGTTGCAAATATCTGAT+TGG | + | chr3.4:82916193-82916212 | MS.gene067157:intron | 35.0% | |
| ATCTTTGCATGGTCAGTATA+TGG | - | chr3.4:82915500-82915519 | None:intergenic | 35.0% | |
| ATGCGTTGTAACTTTCAGTA+TGG | - | chr3.4:82916402-82916421 | None:intergenic | 35.0% | |
| CAAAAGCGATTGAATCTTAC+CGG | - | chr3.4:82914362-82914381 | None:intergenic | 35.0% | |
| CAACATCTGCATAATGAATC+AGG | - | chr3.4:82915158-82915177 | None:intergenic | 35.0% | |
| CTGGATATCCGTATCTAAAT+TGG | - | chr3.4:82916259-82916278 | None:intergenic | 35.0% | |
| GAAGGTTCAAGAATTTGTCA+AGG | + | chr3.4:82916661-82916680 | MS.gene067157:intron | 35.0% | |
| GACGCCAATGTTCAAAATAT+GGG | + | chr3.4:82916126-82916145 | MS.gene067157:intron | 35.0% | |
| GGATTGAATTATTGACCACT+TGG | + | chr3.4:82914751-82914770 | MS.gene067157:intron | 35.0% | |
| GTATGACAATGATACAGACA+AGG | + | chr3.4:82916745-82916764 | MS.gene067157:CDS | 35.0% | |
| TATTAAGGTTGCCATCAAAC+CGG | + | chr3.4:82914319-82914338 | MS.gene067157:CDS | 35.0% | |
| TCAAATTGAAAGTTGCTTCG+TGG | - | chr3.4:82914954-82914973 | None:intergenic | 35.0% | |
| TCAGTATATGGAGAGATGAT+GGG | - | chr3.4:82915488-82915507 | None:intergenic | 35.0% | |
| TCATATTACACCATGTGAGT+TGG | - | chr3.4:82915252-82915271 | None:intergenic | 35.0% | |
| TCTGTCTCCGTAACTTATAA+TGG | + | chr3.4:82915396-82915415 | MS.gene067157:intron | 35.0% | |
| TTTAACAGCTGAATACGGTT+AGG | - | chr3.4:82916056-82916075 | None:intergenic | 35.0% | |
| ! | ATACGATTGTTTTCTGCTTC+TGG | + | chr3.4:82915689-82915708 | MS.gene067157:intron | 35.0% |
| ! | CTCTTCCAGTTCTAATTACA+TGG | + | chr3.4:82915973-82915992 | MS.gene067157:intron | 35.0% |
| ! | GATCTTATATTCCGGTTTGA+TGG | - | chr3.4:82914333-82914352 | None:intergenic | 35.0% |
| ! | GCATTGGCATATTTCCTTAA+TGG | + | chr3.4:82916767-82916786 | MS.gene067157:CDS | 35.0% |
| ! | TCTTAAACTTTAGGGATAGG+TGG | - | chr3.4:82914602-82914621 | None:intergenic | 35.0% |
| ! | TGCAAATATCTGATTGGTTG+TGG | + | chr3.4:82916199-82916218 | MS.gene067157:intron | 35.0% |
| !! | GTGTCCCATATTTTGAACAT+TGG | - | chr3.4:82916133-82916152 | None:intergenic | 35.0% |
| !! | TGGATTGGAGAGGAAAATTT+TGG | + | chr3.4:82914977-82914996 | MS.gene067157:CDS | 35.0% |
| !!! | GATGGGGCTTTTTTAAGATA+TGG | + | chr3.4:82914506-82914525 | MS.gene067157:intron | 35.0% |
| AACCCAAACTGGACCAAATT+TGG | + | chr3.4:82915017-82915036 | MS.gene067157:CDS | 40.0% | |
| ACATTGCCATCTATGAAGCA+CGG | + | chr3.4:82916104-82916123 | MS.gene067157:intron | 40.0% | |
| ACCCAAACTGGACCAAATTT+GGG | + | chr3.4:82915018-82915037 | MS.gene067157:CDS | 40.0% | |
| ATACACCCTTCTGCATGAAA+TGG | + | chr3.4:82916685-82916704 | MS.gene067157:CDS | 40.0% | |
| CAATGATACAGACAAGGCAT+TGG | + | chr3.4:82916751-82916770 | MS.gene067157:CDS | 40.0% | |
| CTTTCTGCTTCTCTTGATTC+TGG | + | chr3.4:82915544-82915563 | MS.gene067157:intron | 40.0% | |
| GACACACACACACATATCTT+GGG | + | chr3.4:82916154-82916173 | MS.gene067157:intron | 40.0% | |
| GACAGAGAACATACTTTGGT+TGG | - | chr3.4:82915382-82915401 | None:intergenic | 40.0% | |
| GGACGCCAATGTTCAAAATA+TGG | + | chr3.4:82916125-82916144 | MS.gene067157:intron | 40.0% | |
| GGTAGAAAATCTTCCAACCA+AGG | + | chr3.4:82915040-82915059 | MS.gene067157:CDS | 40.0% | |
| GGTTTAAGTCCAAAGGGTTA+TGG | - | chr3.4:82914686-82914705 | None:intergenic | 40.0% | |
| GTCAGTATATGGAGAGATGA+TGG | - | chr3.4:82915489-82915508 | None:intergenic | 40.0% | |
| TACACCCTTCTGCATGAAAT+GGG | + | chr3.4:82916686-82916705 | MS.gene067157:CDS | 40.0% | |
| TATGCTATTAGGTAAAGCCG+TGG | + | chr3.4:82914825-82914844 | MS.gene067157:intron | 40.0% | |
| TCATAGATGGCAATGTGGTT+TGG | - | chr3.4:82916100-82916119 | None:intergenic | 40.0% | |
| TCTACTGTTTCCAACTCACA+TGG | + | chr3.4:82915239-82915258 | MS.gene067157:intron | 40.0% | |
| TGACACACACACACATATCT+TGG | + | chr3.4:82916153-82916172 | MS.gene067157:intron | 40.0% | |
| TGATACATCATCGTCGTCAA+AGG | + | chr3.4:82915067-82915086 | MS.gene067157:CDS | 40.0% | |
| ! | CCTCATTTGCTACCAAATGT+GGG | + | chr3.4:82914921-82914940 | MS.gene067157:CDS | 40.0% |
| ! | CGTGGTGTTTTCTGAGTTTT+GGG | + | chr3.4:82916490-82916509 | MS.gene067157:intron | 40.0% |
| ! | TCGTGGTGTTTTCTGAGTTT+TGG | + | chr3.4:82916489-82916508 | MS.gene067157:intron | 40.0% |
| AACGTTGTACTGTAGCCTGT+AGG | + | chr3.4:82915945-82915964 | MS.gene067157:intron | 45.0% | |
| AAGCCGTGGAGACAATTTAC+TGG | + | chr3.4:82914839-82914858 | MS.gene067157:intron | 45.0% | |
| AAGCGATTGAATCTTACCGG+CGG | - | chr3.4:82914359-82914378 | None:intergenic | 45.0% | |
| ACACACACACATATCTTGGG+TGG | + | chr3.4:82916157-82916176 | MS.gene067157:intron | 45.0% | |
| ACCCCAAATTTGGTCCAGTT+TGG | - | chr3.4:82915023-82915042 | None:intergenic | 45.0% | |
| ACTCCTCTTTCCCAGCATAA+AGG | - | chr3.4:82915724-82915743 | None:intergenic | 45.0% | |
| AGCATGCACGCAATGTTGTA+TGG | - | chr3.4:82915666-82915685 | None:intergenic | 45.0% | |
| ATGATTTCCAGTTGCTGGTC+TGG | - | chr3.4:82916278-82916297 | None:intergenic | 45.0% | |
| CACACACACATATCTTGGGT+GGG | + | chr3.4:82916158-82916177 | MS.gene067157:intron | 45.0% | |
| CACGAGGGTTTAAGTCCAAA+GGG | - | chr3.4:82914692-82914711 | None:intergenic | 45.0% | |
| CAGAGAAGGAAAACCCAAAC+TGG | + | chr3.4:82915006-82915025 | MS.gene067157:CDS | 45.0% | |
| CAGCAATTGGAACAACCTCT+CGG | - | chr3.4:82915339-82915358 | None:intergenic | 45.0% | |
| CCCAAACTGGACCAAATTTG+GGG | + | chr3.4:82915019-82915038 | MS.gene067157:CDS | 45.0% | |
| CCCCAAATTTGGTCCAGTTT+GGG | - | chr3.4:82915022-82915041 | None:intergenic | 45.0% | |
| CGATGATGTATCAGAAGCCT+TGG | - | chr3.4:82915060-82915079 | None:intergenic | 45.0% | |
| CGGAGACAGAGAACATACTT+TGG | - | chr3.4:82915386-82915405 | None:intergenic | 45.0% | |
| CGTGGAATATCTCCCACATT+TGG | - | chr3.4:82914936-82914955 | None:intergenic | 45.0% | |
| CTCCTCTTTCCCAGCATAAA+GGG | - | chr3.4:82915723-82915742 | None:intergenic | 45.0% | |
| CTGGGAAAGAGGAGTAATGT+TGG | + | chr3.4:82915729-82915748 | MS.gene067157:intron | 45.0% | |
| GATGTATCAGAAGCCTTGGT+TGG | - | chr3.4:82915056-82915075 | None:intergenic | 45.0% | |
| GCACGCAATGTTGTATGGAT+CGG | - | chr3.4:82915661-82915680 | None:intergenic | 45.0% | |
| GTGCTTCATAGATGGCAATG+TGG | - | chr3.4:82916105-82916124 | None:intergenic | 45.0% | |
| TACAGGCTACAGTACAACGT+TGG | - | chr3.4:82915946-82915965 | None:intergenic | 45.0% | |
| TAGGAACCAGTAGACTCCAT+AGG | - | chr3.4:82915758-82915777 | None:intergenic | 45.0% | |
| TCTTTCCCAGCATAAAGGGA+GGG | - | chr3.4:82915719-82915738 | None:intergenic | 45.0% | |
| TTATAACTGGGAGCAGACTC+TGG | - | chr3.4:82915909-82915928 | None:intergenic | 45.0% | |
| ! | CCCACATTTGGTAGCAAATG+AGG | - | chr3.4:82914924-82914943 | None:intergenic | 45.0% |
| ! | GCCTCATTTGCTACCAAATG+TGG | + | chr3.4:82914920-82914939 | MS.gene067157:intron | 45.0% |
| ! | GGAGTAATGTTGGTGTCCTA+TGG | + | chr3.4:82915739-82915758 | MS.gene067157:intron | 45.0% |
| ! | TGGGTTTTCCTTCTCTGCTT+CGG | - | chr3.4:82915003-82915022 | None:intergenic | 45.0% |
| !! | AATTTTGGCCGAAGCAGAGA+AGG | + | chr3.4:82914992-82915011 | MS.gene067157:CDS | 45.0% |
| AACCCTATACGTCGACCAAG+TGG | - | chr3.4:82914769-82914788 | None:intergenic | 50.0% | |
| ATCTTGGGTGGGCGAATTGA+TGG | + | chr3.4:82916169-82916188 | MS.gene067157:intron | 50.0% | |
| ATTTCCAGTCACAGCGTAGC+AGG | + | chr3.4:82916578-82916597 | MS.gene067157:intron | 50.0% | |
| CTCCCTTTATGCTGGGAAAG+AGG | + | chr3.4:82915718-82915737 | MS.gene067157:intron | 50.0% | |
| CTCTTTCCCAGCATAAAGGG+AGG | - | chr3.4:82915720-82915739 | None:intergenic | 50.0% | |
| CTTTCCCAGCATAAAGGGAG+GGG | - | chr3.4:82915718-82915737 | None:intergenic | 50.0% | |
| GACCACTTGGTCGACGTATA+GGG | + | chr3.4:82914764-82914783 | MS.gene067157:intron | 50.0% | |
| GCACGAGGGTTTAAGTCCAA+AGG | - | chr3.4:82914693-82914712 | None:intergenic | 50.0% | |
| GGAATATAAGATCGCACCGC+CGG | + | chr3.4:82914340-82914359 | MS.gene067157:CDS | 50.0% | |
| GGCGGTGCGATCTTATATTC+CGG | - | chr3.4:82914341-82914360 | None:intergenic | 50.0% | |
| TCTTGGGTGGGCGAATTGAT+GGG | + | chr3.4:82916170-82916189 | MS.gene067157:intron | 50.0% | |
| TGACCACTTGGTCGACGTAT+AGG | + | chr3.4:82914763-82914782 | MS.gene067157:intron | 50.0% | |
| TGGTGTCCTATGGAGTCTAC+TGG | + | chr3.4:82915749-82915768 | MS.gene067157:intron | 50.0% | |
| TGTACTGTAGCCTGTAGGAG+AGG | + | chr3.4:82915950-82915969 | MS.gene067157:intron | 50.0% | |
| TTTCCAGTCACAGCGTAGCA+GGG | + | chr3.4:82916579-82916598 | MS.gene067157:intron | 50.0% | |
| ACTGGAAGAGCCTCTCCTAC+AGG | - | chr3.4:82915963-82915982 | None:intergenic | 55.0% | |
| CGGATATCCAGACCAGCAAC+TGG | + | chr3.4:82916268-82916287 | MS.gene067157:intron | 55.0% | |
| TCCAAAGGGTTATGGCGCGA+GGG | - | chr3.4:82914678-82914697 | None:intergenic | 55.0% | |
| TGGCGTCCGTGCTTCATAGA+TGG | - | chr3.4:82916113-82916132 | None:intergenic | 55.0% | |
| TTTCCCTGCTACGCTGTGAC+TGG | - | chr3.4:82916585-82916604 | None:intergenic | 55.0% | |
| AACCTCTCGGCTGAGTCCCA+TGG | - | chr3.4:82915326-82915345 | None:intergenic | 60.0% | |
| CCAAAGGGTTATGGCGCGAG+GGG | - | chr3.4:82914677-82914696 | None:intergenic | 60.0% | |
| GCCACCCCTCCCTTTATGCT+GGG | + | chr3.4:82915711-82915730 | MS.gene067157:intron | 60.0% | |
| GGGAGCAGACTCTGGATGAG+AGG | - | chr3.4:82915901-82915920 | None:intergenic | 60.0% | |
| GTCCAAAGGGTTATGGCGCG+AGG | - | chr3.4:82914679-82914698 | None:intergenic | 60.0% | |
| TCCCAGCATAAAGGGAGGGG+TGG | - | chr3.4:82915715-82915734 | None:intergenic | 60.0% | |
| AGCCATGGGACTCAGCCGAG+AGG | + | chr3.4:82915321-82915340 | MS.gene067157:CDS | 65.0% | |
| CCCCTCGCGCCATAACCCTT+TGG | + | chr3.4:82914674-82914693 | MS.gene067157:intron | 65.0% | |
| GGCCACCCCTCCCTTTATGC+TGG | + | chr3.4:82915710-82915729 | MS.gene067157:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 82914309 | 82916799 | 82914309 | ID=MS.gene067157 |
| chr3.4 | mRNA | 82914309 | 82916799 | 82914309 | ID=MS.gene067157.t1;Parent=MS.gene067157 |
| chr3.4 | exon | 82914309 | 82914361 | 82914309 | ID=MS.gene067157.t1.exon1;Parent=MS.gene067157.t1 |
| chr3.4 | CDS | 82914309 | 82914361 | 82914309 | ID=cds.MS.gene067157.t1;Parent=MS.gene067157.t1 |
| chr3.4 | exon | 82914921 | 82915088 | 82914921 | ID=MS.gene067157.t1.exon2;Parent=MS.gene067157.t1 |
| chr3.4 | CDS | 82914921 | 82915088 | 82914921 | ID=cds.MS.gene067157.t1;Parent=MS.gene067157.t1 |
| chr3.4 | exon | 82915286 | 82915387 | 82915286 | ID=MS.gene067157.t1.exon3;Parent=MS.gene067157.t1 |
| chr3.4 | CDS | 82915286 | 82915387 | 82915286 | ID=cds.MS.gene067157.t1;Parent=MS.gene067157.t1 |
| chr3.4 | exon | 82916665 | 82916799 | 82916665 | ID=MS.gene067157.t1.exon4;Parent=MS.gene067157.t1 |
| chr3.4 | CDS | 82916665 | 82916799 | 82916665 | ID=cds.MS.gene067157.t1;Parent=MS.gene067157.t1 |
| Gene Sequence |
| Protein sequence |
