Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067167.t1 | XP_003617922.1 | 99.3 | 418 | 3 | 0 | 1 | 418 | 36 | 453 | 6.70E-236 | 826.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067167.t1 | Q9ZW34 | 80.6 | 418 | 81 | 0 | 1 | 418 | 36 | 453 | 1.4e-197 | 690.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067167.t1 | G7K4W1 | 99.3 | 418 | 3 | 0 | 1 | 418 | 36 | 453 | 4.8e-236 | 826.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene067167 | 0.815452 | 9.18E-52 | -1.69E-46 |
| MS.gene049824 | MS.gene067167 | 0.824622 | 7.31E-54 | -1.69E-46 |
| MS.gene053079 | MS.gene067167 | 0.802656 | 5.06E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene067167 | 0.80539 | 1.37E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene067167 | 0.820947 | 5.24E-53 | -1.69E-46 |
| MS.gene056507 | MS.gene067167 | 0.8042 | 2.42E-49 | -1.69E-46 |
| MS.gene057360 | MS.gene067167 | 0.802617 | 5.15E-49 | -1.69E-46 |
| MS.gene060194 | MS.gene067167 | 0.809529 | 1.81E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene067167 | 0.821929 | 3.11E-53 | -1.69E-46 |
| MS.gene060619 | MS.gene067167 | 0.822522 | 2.26E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene067167 | MS.gene007304 | PPI |
| MS.gene83234 | MS.gene067167 | PPI |
| MS.gene067167 | MS.gene78187 | PPI |
| MS.gene067167 | MS.gene020556 | PPI |
| MS.gene045798 | MS.gene067167 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067167.t1 | MTR_5g096970 | 99.282 | 418 | 3 | 0 | 1 | 418 | 36 | 453 | 0.0 | 855 |
| MS.gene067167.t1 | MTR_7g103620 | 58.473 | 419 | 163 | 7 | 10 | 418 | 2 | 419 | 1.01e-169 | 483 |
| MS.gene067167.t1 | MTR_2g056190 | 57.908 | 411 | 171 | 2 | 9 | 418 | 62 | 471 | 1.23e-169 | 484 |
| MS.gene067167.t1 | MTR_6g060570 | 55.981 | 418 | 155 | 8 | 12 | 418 | 5 | 404 | 3.77e-155 | 446 |
| MS.gene067167.t1 | MTR_7g103620 | 57.627 | 354 | 141 | 5 | 74 | 418 | 16 | 369 | 7.47e-141 | 408 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067167.t1 | AT2G29560 | 80.622 | 418 | 81 | 0 | 1 | 418 | 36 | 453 | 0.0 | 712 |
| MS.gene067167.t1 | AT1G74030 | 57.820 | 422 | 169 | 4 | 5 | 418 | 37 | 457 | 9.55e-170 | 484 |
| MS.gene067167.t1 | AT2G36530 | 58.473 | 419 | 163 | 7 | 10 | 418 | 2 | 419 | 3.07e-168 | 479 |
| MS.gene067167.t1 | AT2G36530 | 57.538 | 398 | 158 | 7 | 31 | 418 | 12 | 408 | 2.31e-156 | 449 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 37939 | gene | 7188 | 15866 | 7188 | ID=MS.gene067167 |
| 37939 | mRNA | 7188 | 15866 | 7188 | ID=MS.gene067167.t1;Parent=MS.gene067167 |
| 37939 | exon | 15712 | 15866 | 15712 | ID=MS.gene067167.t1.exon1;Parent=MS.gene067167.t1 |
| 37939 | CDS | 15712 | 15866 | 15712 | ID=cds.MS.gene067167.t1;Parent=MS.gene067167.t1 |
| 37939 | exon | 13904 | 14078 | 13904 | ID=MS.gene067167.t1.exon2;Parent=MS.gene067167.t1 |
| 37939 | CDS | 13904 | 14078 | 13904 | ID=cds.MS.gene067167.t1;Parent=MS.gene067167.t1 |
| 37939 | exon | 12954 | 13025 | 12954 | ID=MS.gene067167.t1.exon3;Parent=MS.gene067167.t1 |
| 37939 | CDS | 12954 | 13025 | 12954 | ID=cds.MS.gene067167.t1;Parent=MS.gene067167.t1 |
| 37939 | exon | 12731 | 12847 | 12731 | ID=MS.gene067167.t1.exon4;Parent=MS.gene067167.t1 |
| 37939 | CDS | 12731 | 12847 | 12731 | ID=cds.MS.gene067167.t1;Parent=MS.gene067167.t1 |
| 37939 | exon | 11538 | 11618 | 11538 | ID=MS.gene067167.t1.exon5;Parent=MS.gene067167.t1 |
| 37939 | CDS | 11538 | 11618 | 11538 | ID=cds.MS.gene067167.t1;Parent=MS.gene067167.t1 |
| 37939 | exon | 11240 | 11316 | 11240 | ID=MS.gene067167.t1.exon6;Parent=MS.gene067167.t1 |
| 37939 | CDS | 11240 | 11316 | 11240 | ID=cds.MS.gene067167.t1;Parent=MS.gene067167.t1 |
| 37939 | exon | 10135 | 10238 | 10135 | ID=MS.gene067167.t1.exon7;Parent=MS.gene067167.t1 |
| 37939 | CDS | 10135 | 10238 | 10135 | ID=cds.MS.gene067167.t1;Parent=MS.gene067167.t1 |
| 37939 | exon | 8756 | 8854 | 8756 | ID=MS.gene067167.t1.exon8;Parent=MS.gene067167.t1 |
| 37939 | CDS | 8756 | 8854 | 8756 | ID=cds.MS.gene067167.t1;Parent=MS.gene067167.t1 |
| 37939 | exon | 8571 | 8656 | 8571 | ID=MS.gene067167.t1.exon9;Parent=MS.gene067167.t1 |
| 37939 | CDS | 8571 | 8656 | 8571 | ID=cds.MS.gene067167.t1;Parent=MS.gene067167.t1 |
| 37939 | exon | 7880 | 7966 | 7880 | ID=MS.gene067167.t1.exon10;Parent=MS.gene067167.t1 |
| 37939 | CDS | 7880 | 7966 | 7880 | ID=cds.MS.gene067167.t1;Parent=MS.gene067167.t1 |
| 37939 | exon | 7188 | 7409 | 7188 | ID=MS.gene067167.t1.exon11;Parent=MS.gene067167.t1 |
| 37939 | CDS | 7188 | 7409 | 7188 | ID=cds.MS.gene067167.t1;Parent=MS.gene067167.t1 |
| Gene Sequence |
| Protein sequence |
