Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067313.t1 | XP_003627492.2 | 97.7 | 342 | 8 | 0 | 1 | 342 | 151 | 492 | 6.50E-189 | 669.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067313.t1 | Q8GYY5 | 58.0 | 345 | 100 | 6 | 1 | 342 | 145 | 447 | 1.7e-92 | 340.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067313.t1 | G7L9Z1 | 97.7 | 342 | 8 | 0 | 1 | 342 | 151 | 492 | 4.7e-189 | 669.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051388 | MS.gene067313 | 0.846612 | 1.95E-59 | -1.69E-46 |
| MS.gene053144 | MS.gene067313 | 0.804948 | 1.69E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene067313 | 0.80372 | 3.05E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene067313 | 0.815925 | 7.20E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene067313 | 0.82698 | 2.01E-54 | -1.69E-46 |
| MS.gene055468 | MS.gene067313 | 0.82765 | 1.39E-54 | -1.69E-46 |
| MS.gene055469 | MS.gene067313 | 0.834354 | 3.15E-56 | -1.69E-46 |
| MS.gene055580 | MS.gene067313 | -0.801497 | 8.76E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene067313 | 0.800506 | 1.40E-48 | -1.69E-46 |
| MS.gene060505 | MS.gene067313 | 0.810583 | 1.07E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 68 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTATCCGGCTTGATTA+AGG | 0.253081 | 8.4:+70181595 | MS.gene067313:CDS |
| AAAGGACCACTTTCGTATCT+TGG | 0.283881 | 8.4:-70183121 | None:intergenic |
| TGATGCAGTGTGAAGGTATT+TGG | 0.306995 | 8.4:+70181265 | None:intergenic |
| TTTACAATGGCAAGACTTGC+AGG | 0.317689 | 8.4:-70183262 | None:intergenic |
| GATCTCGAACGAATGCTTCT+TGG | 0.347459 | 8.4:-70181532 | None:intergenic |
| GTGTTCCAACAATTCTTCTA+AGG | 0.355399 | 8.4:+70181335 | MS.gene067313:CDS |
| ATCGATGTTCATTGTTTATC+CGG | 0.358798 | 8.4:+70181584 | MS.gene067313:CDS |
| TGCATCCTTAGAAGAATTGT+TGG | 0.370772 | 8.4:-70181340 | None:intergenic |
| AGACTTGCAGGCTTCTTAGA+TGG | 0.380145 | 8.4:-70183250 | None:intergenic |
| TGACTGGGCAATCAATTTGA+TGG | 0.385583 | 8.4:+70182269 | MS.gene067313:CDS |
| CAGAAGCTGCTCTTCTTGAC+TGG | 0.401025 | 8.4:+70182253 | MS.gene067313:CDS |
| TGCATGAATCAATGCAGTTA+AGG | 0.415964 | 8.4:-70182771 | None:intergenic |
| GCATGAATCAATGCAGTTAA+GGG | 0.418194 | 8.4:-70182770 | None:intergenic |
| AGGAGGAAATTCATCATTGC+AGG | 0.421427 | 8.4:-70182900 | None:intergenic |
| GGCTTGCTCAATTGAAATAC+CGG | 0.440128 | 8.4:-70183229 | None:intergenic |
| TCCTCTTTGTTGAAGTTGAA+AGG | 0.462988 | 8.4:-70182920 | None:intergenic |
| TGGTTTAGAGAGCTTCCAAC+TGG | 0.465706 | 8.4:+70182144 | MS.gene067313:CDS |
| CAGTGTTCTTATGATGATAG+AGG | 0.479488 | 8.4:+70181307 | MS.gene067313:CDS |
| TTCGAGATCAGTTAAACAAA+GGG | 0.480003 | 8.4:+70181546 | MS.gene067313:CDS |
| GGAAGGAAGAGGAGAAGCTT+GGG | 0.485623 | 8.4:+70183291 | MS.gene067313:CDS |
| GCTCCATTCTATTCTTCCTA+AGG | 0.486204 | 8.4:-70183020 | None:intergenic |
| GGGAAGGAAGAGGAGAAGCT+TGG | 0.491896 | 8.4:+70183290 | MS.gene067313:CDS |
| GTCAAGAAGAGCAGCTTCTG+TGG | 0.495179 | 8.4:-70182250 | None:intergenic |
| ACGGCGTGCGCAAGTTATGC+AGG | 0.495303 | 8.4:+70183203 | MS.gene067313:CDS |
| TTCTCAAGGACTTCCACCTT+AGG | 0.495514 | 8.4:+70183004 | MS.gene067313:CDS |
| GAATGCGCGCAACGTAGCTA+TGG | 0.499082 | 8.4:+70182326 | MS.gene067313:CDS |
| GTCTTGCCATTGTAAATACT+AGG | 0.506258 | 8.4:+70183269 | MS.gene067313:CDS |
| TCCTTTCAACTTCAACAAAG+AGG | 0.511319 | 8.4:+70182919 | MS.gene067313:CDS |
| TAACAAACCTGTGTCATGTT+GGG | 0.519362 | 8.4:-70182357 | None:intergenic |
| CGTAAATACCTTAATCAAGC+CGG | 0.519512 | 8.4:-70181603 | None:intergenic |
| GTTCGAGATCAGTTAAACAA+AGG | 0.524433 | 8.4:+70181545 | MS.gene067313:CDS |
| CCACCTTAGGAAGAATAGAA+TGG | 0.525280 | 8.4:+70183017 | MS.gene067313:CDS |
| TTGCATTGCATCACTTGCTC+CGG | 0.531461 | 8.4:-70182186 | None:intergenic |
| AGAAGAGCAGCTTCTGTGGA+AGG | 0.535601 | 8.4:-70182246 | None:intergenic |
| CAAAAGCAATTGTATTCTGA+AGG | 0.538997 | 8.4:+70181361 | MS.gene067313:CDS |
| CCATTCTATTCTTCCTAAGG+TGG | 0.545441 | 8.4:-70183017 | None:intergenic |
| GCCATTGTAAATACTAGGGA+AGG | 0.559174 | 8.4:+70183274 | MS.gene067313:CDS |
| GCGCAAGTTATGCAGGCACC+CGG | 0.570203 | 8.4:+70183210 | MS.gene067313:CDS |
| GAAGATATGACAGCGAACAT+TGG | 0.571920 | 8.4:+70183167 | MS.gene067313:CDS |
| GTCACCATGTGAACAAATTG+AGG | 0.575603 | 8.4:+70182943 | MS.gene067313:CDS |
| TCTTGCCATTGTAAATACTA+GGG | 0.575822 | 8.4:+70183270 | MS.gene067313:CDS |
| AGAAGCTGCTCTTCTTGACT+GGG | 0.576970 | 8.4:+70182254 | MS.gene067313:CDS |
| GCATCCTCAATTTGTTCACA+TGG | 0.578905 | 8.4:-70182947 | None:intergenic |
| CATTGGTCACGATTGAGAAA+CGG | 0.582047 | 8.4:+70183184 | MS.gene067313:CDS |
| AATGGAGCGTAGAGAAACTT+CGG | 0.589113 | 8.4:+70183035 | MS.gene067313:CDS |
| GTAAATACTAGGGAAGGAAG+AGG | 0.593283 | 8.4:+70183280 | MS.gene067313:CDS |
| AGAGAATCAAGTACACCAGT+TGG | 0.600276 | 8.4:-70182159 | None:intergenic |
| CTACCAAAAGAAAATTCTCA+AGG | 0.605610 | 8.4:+70182990 | MS.gene067313:CDS |
| TCTTTGTTGAAGTTGAAAGG+AGG | 0.610113 | 8.4:-70182917 | None:intergenic |
| AGTTGGAAGCTCTCTAAACC+AGG | 0.611737 | 8.4:-70182142 | None:intergenic |
| TTTCGCGCCCAACATGACAC+AGG | 0.615447 | 8.4:+70182350 | MS.gene067313:CDS |
| TCCTTCCCTAGTATTTACAA+TGG | 0.616815 | 8.4:-70183275 | None:intergenic |
| GGCTATTCTCAGCAGTAATG+CGG | 0.618302 | 8.4:-70181511 | None:intergenic |
| AGTGTTCTTATGATGATAGA+GGG | 0.624124 | 8.4:+70181308 | MS.gene067313:CDS |
| CATGAATCAATGCAGTTAAG+GGG | 0.629505 | 8.4:-70182769 | None:intergenic |
| AAGATTGCTCTCACATAGCA+TGG | 0.632661 | 8.4:+70182868 | MS.gene067313:CDS |
| CTTTAAATGATGCAGTGTGA+AGG | 0.637209 | 8.4:+70181258 | None:intergenic |
| AGGAAATTCATCATTGCAGG+AGG | 0.637863 | 8.4:-70182897 | None:intergenic |
| TTTCCATGGATGAAGGCAGA+AGG | 0.638432 | 8.4:+70181482 | MS.gene067313:intron |
| AACAAAGGGATAGTGCCACA+TGG | 0.638676 | 8.4:+70181560 | MS.gene067313:CDS |
| AAGCAATTGTATTCTGAAGG+AGG | 0.641065 | 8.4:+70181364 | MS.gene067313:CDS |
| GCTTGCTCAATTGAAATACC+GGG | 0.650080 | 8.4:-70183228 | None:intergenic |
| TGGAAGGAAGTAACTTGACA+AGG | 0.651985 | 8.4:-70182230 | None:intergenic |
| TTAACAAACCTGTGTCATGT+TGG | 0.658298 | 8.4:-70182358 | None:intergenic |
| AGAGAAACTTCGGAGCTCCG+AGG | 0.659373 | 8.4:+70183045 | MS.gene067313:CDS |
| GTAACTCCAAGATACGAAAG+TGG | 0.671137 | 8.4:+70183115 | MS.gene067313:CDS |
| TGTACTTGATTCTCTCACAC+CGG | 0.686660 | 8.4:+70182167 | MS.gene067313:CDS |
| CAATGAACATCGATTCCATG+TGG | 0.724200 | 8.4:-70181575 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACTATAACTATTTTCTAA+AGG | - | chr8.4:70183142-70183161 | None:intergenic | 15.0% |
| !!! | TTTTTATCATTATCTATTTC+AGG | + | chr8.4:70182119-70182138 | MS.gene067313:intron | 15.0% |
| !! | AAACACTAAGTTTGATTAAT+AGG | + | chr8.4:70181840-70181859 | MS.gene067313:intron | 20.0% |
| !! | AATGATAAAAAGATATGACA+AGG | - | chr8.4:70182110-70182129 | None:intergenic | 20.0% |
| !! | CATCTAAATTTCATATTTCA+TGG | + | chr8.4:70182508-70182527 | MS.gene067313:intron | 20.0% |
| !! | GGTTGAAAAATAAAAAGATA+CGG | - | chr8.4:70181956-70181975 | None:intergenic | 20.0% |
| !!! | ATAGTTACATGTGAATTTTA+AGG | + | chr8.4:70181446-70181465 | MS.gene067313:intron | 20.0% |
| !!! | TATCTTTTTATTTTTCAACC+TGG | + | chr8.4:70181956-70181975 | MS.gene067313:intron | 20.0% |
| !!! | TGTATTTTTCATTTCACTTT+TGG | - | chr8.4:70182708-70182727 | None:intergenic | 20.0% |
| !!! | TTCAGTCAAATGAATTTTAT+AGG | - | chr8.4:70181633-70181652 | None:intergenic | 20.0% |
| ! | AAATTGCAGAACATACTTTA+AGG | - | chr8.4:70181390-70181409 | None:intergenic | 25.0% |
| ! | ACTAAGTTTGATTAATAGGA+AGG | + | chr8.4:70181844-70181863 | MS.gene067313:intron | 25.0% |
| ! | CTCATAATTTACTGATAAGT+GGG | + | chr8.4:70181757-70181776 | MS.gene067313:intron | 25.0% |
| ! | GCTAATTGTACAAAATATCA+GGG | - | chr8.4:70182574-70182593 | None:intergenic | 25.0% |
| ! | TAATAAGCTGAAAAATTCGA+TGG | + | chr8.4:70182613-70182632 | MS.gene067313:intron | 25.0% |
| ! | TCGTATTTGTCAAATTCATT+TGG | + | chr8.4:70181416-70181435 | MS.gene067313:intron | 25.0% |
| ! | TGCAAACTCAGATAATAAAT+TGG | - | chr8.4:70182490-70182509 | None:intergenic | 25.0% |
| ! | TGCTAATTGTACAAAATATC+AGG | - | chr8.4:70182575-70182594 | None:intergenic | 25.0% |
| !! | GATATTTTGTACAATTAGCA+TGG | + | chr8.4:70182575-70182594 | MS.gene067313:intron | 25.0% |
| !! | TGCGTAACTTGTAAATTATT+TGG | + | chr8.4:70181688-70181707 | MS.gene067313:intron | 25.0% |
| !! | TTTAAAACCAGAAATGTTTC+TGG | + | chr8.4:70182427-70182446 | MS.gene067313:intron | 25.0% |
| !!! | GTTGATTATTTTTCTCAAAC+TGG | + | chr8.4:70182070-70182089 | MS.gene067313:intron | 25.0% |
| AGTGTTCTTATGATGATAGA+GGG | + | chr8.4:70181308-70181327 | MS.gene067313:CDS | 30.0% | |
| ATCGATGTTCATTGTTTATC+CGG | + | chr8.4:70181584-70181603 | MS.gene067313:CDS | 30.0% | |
| CAAAAGCAATTGTATTCTGA+AGG | + | chr8.4:70181361-70181380 | MS.gene067313:CDS | 30.0% | |
| CTACCAAAAGAAAATTCTCA+AGG | + | chr8.4:70182990-70183009 | MS.gene067313:CDS | 30.0% | |
| GCTCATAATTTACTGATAAG+TGG | + | chr8.4:70181756-70181775 | MS.gene067313:intron | 30.0% | |
| TAATCAACCAGAAACATTTC+TGG | - | chr8.4:70182437-70182456 | None:intergenic | 30.0% | |
| TCTTGCCATTGTAAATACTA+GGG | + | chr8.4:70183270-70183289 | MS.gene067313:CDS | 30.0% | |
| TTAACATTTCCAAAGCCTTT+CGG | + | chr8.4:70181660-70181679 | MS.gene067313:intron | 30.0% | |
| TTCGAGATCAGTTAAACAAA+GGG | + | chr8.4:70181546-70181565 | MS.gene067313:CDS | 30.0% | |
| ! | AGTCCTTGAGAATTTTCTTT+TGG | - | chr8.4:70182996-70183015 | None:intergenic | 30.0% |
| ! | CCAACGCATACAAAATTTTA+AGG | - | chr8.4:70181731-70181750 | None:intergenic | 30.0% |
| ! | CCTTAAAATTTTGTATGCGT+TGG | + | chr8.4:70181728-70181747 | MS.gene067313:intron | 30.0% |
| ! | CTGTTCATTTTCAACAACAT+CGG | - | chr8.4:70182295-70182314 | None:intergenic | 30.0% |
| !!! | TTCAGATCTTTTTCAAGTGA+TGG | + | chr8.4:70183091-70183110 | MS.gene067313:CDS | 30.0% |
| AAGTTACGCAAATAACCGAA+AGG | - | chr8.4:70181678-70181697 | None:intergenic | 35.0% | |
| ACTTTCTTGTGAAATCCAGA+TGG | + | chr8.4:70182742-70182761 | MS.gene067313:intron | 35.0% | |
| ATCATTATCTATTTCAGGCC+TGG | + | chr8.4:70182124-70182143 | MS.gene067313:intron | 35.0% | |
| CAGTGTTCTTATGATGATAG+AGG | + | chr8.4:70181307-70181326 | MS.gene067313:CDS | 35.0% | |
| CATGAATCAATGCAGTTAAG+GGG | - | chr8.4:70182772-70182791 | None:intergenic | 35.0% | |
| CGTAAATACCTTAATCAAGC+CGG | - | chr8.4:70181606-70181625 | None:intergenic | 35.0% | |
| GCATGAATCAATGCAGTTAA+GGG | - | chr8.4:70182773-70182792 | None:intergenic | 35.0% | |
| GTACAATTAGCATGGCATAT+CGG | + | chr8.4:70182583-70182602 | MS.gene067313:intron | 35.0% | |
| GTCTAATTTCATGCTTTCCA+TGG | + | chr8.4:70181468-70181487 | MS.gene067313:intron | 35.0% | |
| GTCTTGCCATTGTAAATACT+AGG | + | chr8.4:70183269-70183288 | MS.gene067313:CDS | 35.0% | |
| GTGTTCCAACAATTCTTCTA+AGG | + | chr8.4:70181335-70181354 | MS.gene067313:CDS | 35.0% | |
| GTTCGAGATCAGTTAAACAA+AGG | + | chr8.4:70181545-70181564 | MS.gene067313:CDS | 35.0% | |
| TAACAAACCTGTGTCATGTT+GGG | - | chr8.4:70182360-70182379 | None:intergenic | 35.0% | |
| TATCTATTAGAACAGCAACC+AGG | - | chr8.4:70181977-70181996 | None:intergenic | 35.0% | |
| TCCTCTTTGTTGAAGTTGAA+AGG | - | chr8.4:70182923-70182942 | None:intergenic | 35.0% | |
| TCCTTCCCTAGTATTTACAA+TGG | - | chr8.4:70183278-70183297 | None:intergenic | 35.0% | |
| TCCTTTCAACTTCAACAAAG+AGG | + | chr8.4:70182919-70182938 | MS.gene067313:CDS | 35.0% | |
| TCTTTGTTGAAGTTGAAAGG+AGG | - | chr8.4:70182920-70182939 | None:intergenic | 35.0% | |
| TGCATCCTTAGAAGAATTGT+TGG | - | chr8.4:70181343-70181362 | None:intergenic | 35.0% | |
| TGCATGAATCAATGCAGTTA+AGG | - | chr8.4:70182774-70182793 | None:intergenic | 35.0% | |
| TTAACAAACCTGTGTCATGT+TGG | - | chr8.4:70182361-70182380 | None:intergenic | 35.0% | |
| ! | AAGCAATTGTATTCTGAAGG+AGG | + | chr8.4:70181364-70181383 | MS.gene067313:CDS | 35.0% |
| ! | TTGTTTATCCGGCTTGATTA+AGG | + | chr8.4:70181595-70181614 | MS.gene067313:CDS | 35.0% |
| !!! | AATTTTGTATGCGTTGGCTA+TGG | + | chr8.4:70181734-70181753 | MS.gene067313:intron | 35.0% |
| AAAGGACCACTTTCGTATCT+TGG | - | chr8.4:70183124-70183143 | None:intergenic | 40.0% | |
| AAGATTGCTCTCACATAGCA+TGG | + | chr8.4:70182868-70182887 | MS.gene067313:CDS | 40.0% | |
| AATGGAGCGTAGAGAAACTT+CGG | + | chr8.4:70183035-70183054 | MS.gene067313:CDS | 40.0% | |
| AGAGAATCAAGTACACCAGT+TGG | - | chr8.4:70182162-70182181 | None:intergenic | 40.0% | |
| AGATGTTTGATCACGGACTT+CGG | - | chr8.4:70181911-70181930 | None:intergenic | 40.0% | |
| AGGAAATTCATCATTGCAGG+AGG | - | chr8.4:70182900-70182919 | None:intergenic | 40.0% | |
| AGGAGGAAATTCATCATTGC+AGG | - | chr8.4:70182903-70182922 | None:intergenic | 40.0% | |
| CATTGGTCACGATTGAGAAA+CGG | + | chr8.4:70183184-70183203 | MS.gene067313:CDS | 40.0% | |
| CCACCTTAGGAAGAATAGAA+TGG | + | chr8.4:70183017-70183036 | MS.gene067313:CDS | 40.0% | |
| CCATTCTATTCTTCCTAAGG+TGG | - | chr8.4:70183020-70183039 | None:intergenic | 40.0% | |
| GAAGATATGACAGCGAACAT+TGG | + | chr8.4:70183167-70183186 | MS.gene067313:CDS | 40.0% | |
| GAGCACAAGATGTTTGATCA+CGG | - | chr8.4:70181918-70181937 | None:intergenic | 40.0% | |
| GCCATTGTAAATACTAGGGA+AGG | + | chr8.4:70183274-70183293 | MS.gene067313:CDS | 40.0% | |
| GCTCCATTCTATTCTTCCTA+AGG | - | chr8.4:70183023-70183042 | None:intergenic | 40.0% | |
| GCTTGCTCAATTGAAATACC+GGG | - | chr8.4:70183231-70183250 | None:intergenic | 40.0% | |
| GTAAATACTAGGGAAGGAAG+AGG | + | chr8.4:70183280-70183299 | MS.gene067313:CDS | 40.0% | |
| GTAAATGAGCGAAACGAGAT+TGG | - | chr8.4:70182468-70182487 | None:intergenic | 40.0% | |
| GTAACTCCAAGATACGAAAG+TGG | + | chr8.4:70183115-70183134 | MS.gene067313:CDS | 40.0% | |
| GTCACCATGTGAACAAATTG+AGG | + | chr8.4:70182943-70182962 | MS.gene067313:CDS | 40.0% | |
| TGACTGGGCAATCAATTTGA+TGG | + | chr8.4:70182269-70182288 | MS.gene067313:CDS | 40.0% | |
| TGGAAGGAAGTAACTTGACA+AGG | - | chr8.4:70182233-70182252 | None:intergenic | 40.0% | |
| TGTACTTGATTCTCTCACAC+CGG | + | chr8.4:70182167-70182186 | MS.gene067313:CDS | 40.0% | |
| TTCATGCTTTCCATGGATGA+AGG | + | chr8.4:70181475-70181494 | MS.gene067313:intron | 40.0% | |
| TTTACAATGGCAAGACTTGC+AGG | - | chr8.4:70183265-70183284 | None:intergenic | 40.0% | |
| ! | GCATCCTCAATTTGTTCACA+TGG | - | chr8.4:70182950-70182969 | None:intergenic | 40.0% |
| ! | GGCTTGCTCAATTGAAATAC+CGG | - | chr8.4:70183232-70183251 | None:intergenic | 40.0% |
| !! | CAATGAACATCGATTCCATG+TGG | - | chr8.4:70181578-70181597 | None:intergenic | 40.0% |
| !!! | GTCTCGATTCCTTTTTTCCT+CGG | - | chr8.4:70183065-70183084 | None:intergenic | 40.0% |
| AACAAAGGGATAGTGCCACA+TGG | + | chr8.4:70181560-70181579 | MS.gene067313:CDS | 45.0% | |
| AGAAGCTGCTCTTCTTGACT+GGG | + | chr8.4:70182254-70182273 | MS.gene067313:CDS | 45.0% | |
| AGACTTGCAGGCTTCTTAGA+TGG | - | chr8.4:70183253-70183272 | None:intergenic | 45.0% | |
| AGTTGGAAGCTCTCTAAACC+AGG | - | chr8.4:70182145-70182164 | None:intergenic | 45.0% | |
| ATTCCTTCTGCCTTCATCCA+TGG | - | chr8.4:70181488-70181507 | None:intergenic | 45.0% | |
| CGCAAATAACCGAAAGGCTT+TGG | - | chr8.4:70181672-70181691 | None:intergenic | 45.0% | |
| GACTTCGGCCATTTATGCAT+AGG | - | chr8.4:70181896-70181915 | None:intergenic | 45.0% | |
| GATCTCGAACGAATGCTTCT+TGG | - | chr8.4:70181535-70181554 | None:intergenic | 45.0% | |
| GCTGGAGACCTATGCATAAA+TGG | + | chr8.4:70181885-70181904 | MS.gene067313:intron | 45.0% | |
| GGAAAAAAGGAATCGAGACG+AGG | + | chr8.4:70183066-70183085 | MS.gene067313:CDS | 45.0% | |
| GGCTATTCTCAGCAGTAATG+CGG | - | chr8.4:70181514-70181533 | None:intergenic | 45.0% | |
| TGGTTTAGAGAGCTTCCAAC+TGG | + | chr8.4:70182144-70182163 | MS.gene067313:CDS | 45.0% | |
| TTCTCAAGGACTTCCACCTT+AGG | + | chr8.4:70183004-70183023 | MS.gene067313:CDS | 45.0% | |
| TTGCATTGCATCACTTGCTC+CGG | - | chr8.4:70182189-70182208 | None:intergenic | 45.0% | |
| TTTCCATGGATGAAGGCAGA+AGG | + | chr8.4:70181482-70181501 | MS.gene067313:intron | 45.0% | |
| AAGTGGGCAGTTTGTCTGAG+CGG | + | chr8.4:70181773-70181792 | MS.gene067313:intron | 50.0% | |
| AGAAGAGCAGCTTCTGTGGA+AGG | - | chr8.4:70182249-70182268 | None:intergenic | 50.0% | |
| ATAGGTCTCCAGCTGTAGAG+TGG | - | chr8.4:70181878-70181897 | None:intergenic | 50.0% | |
| CAGAAGCTGCTCTTCTTGAC+TGG | + | chr8.4:70182253-70182272 | MS.gene067313:CDS | 50.0% | |
| GGAAGGAAGAGGAGAAGCTT+GGG | + | chr8.4:70183291-70183310 | MS.gene067313:CDS | 50.0% | |
| GTCAAGAAGAGCAGCTTCTG+TGG | - | chr8.4:70182253-70182272 | None:intergenic | 50.0% | |
| TACTGCATCCACTCTACAGC+TGG | + | chr8.4:70181867-70181886 | MS.gene067313:intron | 50.0% | |
| TTCGGAGCTCCGAGGAAAAA+AGG | + | chr8.4:70183053-70183072 | MS.gene067313:CDS | 50.0% | |
| AGAGAAACTTCGGAGCTCCG+AGG | + | chr8.4:70183045-70183064 | MS.gene067313:CDS | 55.0% | |
| AGTGGGCAGTTTGTCTGAGC+GGG | + | chr8.4:70181774-70181793 | MS.gene067313:intron | 55.0% | |
| CAGTTAAGGGGTCTGCCATC+TGG | - | chr8.4:70182760-70182779 | None:intergenic | 55.0% | |
| GAATGCGCGCAACGTAGCTA+TGG | + | chr8.4:70182326-70182345 | MS.gene067313:CDS | 55.0% | |
| GGGAAGGAAGAGGAGAAGCT+TGG | + | chr8.4:70183290-70183309 | MS.gene067313:CDS | 55.0% | |
| TTTCGCGCCCAACATGACAC+AGG | + | chr8.4:70182350-70182369 | MS.gene067313:CDS | 55.0% | |
| ACGGCGTGCGCAAGTTATGC+AGG | + | chr8.4:70183203-70183222 | MS.gene067313:CDS | 60.0% | |
| GAGCGGGGAAGGTTGCTCAA+GGG | + | chr8.4:70181790-70181809 | MS.gene067313:intron | 60.0% | |
| GCAGTTTGTCTGAGCGGGGA+AGG | + | chr8.4:70181779-70181798 | MS.gene067313:intron | 60.0% | |
| GCGCAAGTTATGCAGGCACC+CGG | + | chr8.4:70183210-70183229 | MS.gene067313:CDS | 60.0% | |
| GTGGGCAGTTTGTCTGAGCG+GGG | + | chr8.4:70181775-70181794 | MS.gene067313:intron | 60.0% | |
| TGAGCGGGGAAGGTTGCTCA+AGG | + | chr8.4:70181789-70181808 | MS.gene067313:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 70181273 | 70183318 | 70181273 | ID=MS.gene067313 |
| chr8.4 | mRNA | 70181273 | 70183318 | 70181273 | ID=MS.gene067313.t1;Parent=MS.gene067313 |
| chr8.4 | exon | 70181273 | 70181393 | 70181273 | ID=MS.gene067313.t1.exon1;Parent=MS.gene067313.t1 |
| chr8.4 | CDS | 70181273 | 70181393 | 70181273 | ID=cds.MS.gene067313.t1;Parent=MS.gene067313.t1 |
| chr8.4 | exon | 70181497 | 70181616 | 70181497 | ID=MS.gene067313.t1.exon2;Parent=MS.gene067313.t1 |
| chr8.4 | CDS | 70181497 | 70181616 | 70181497 | ID=cds.MS.gene067313.t1;Parent=MS.gene067313.t1 |
| chr8.4 | exon | 70182141 | 70182371 | 70182141 | ID=MS.gene067313.t1.exon3;Parent=MS.gene067313.t1 |
| chr8.4 | CDS | 70182141 | 70182371 | 70182141 | ID=cds.MS.gene067313.t1;Parent=MS.gene067313.t1 |
| chr8.4 | exon | 70182761 | 70183318 | 70182761 | ID=MS.gene067313.t1.exon4;Parent=MS.gene067313.t1 |
| chr8.4 | CDS | 70182761 | 70183318 | 70182761 | ID=cds.MS.gene067313.t1;Parent=MS.gene067313.t1 |
| Gene Sequence |
| Protein sequence |
