Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060505.t1 | XP_003627492.2 | 92.1 | 404 | 8 | 1 | 1 | 380 | 89 | 492 | 4.30E-210 | 740.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060505.t1 | Q8GYY5 | 54.5 | 411 | 112 | 10 | 2 | 380 | 80 | 447 | 1.8e-103 | 377.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060505.t1 | G7L9Z1 | 92.1 | 404 | 8 | 1 | 1 | 380 | 89 | 492 | 3.1e-210 | 740.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060505 | MS.gene067312 | 0.806833 | 6.79E-50 | -1.69E-46 |
| MS.gene060505 | MS.gene067313 | 0.810583 | 1.07E-50 | -1.69E-46 |
| MS.gene060505 | MS.gene84551 | 0.822739 | 2.02E-53 | -1.69E-46 |
| MS.gene060505 | MS.gene84719 | 0.824134 | 9.51E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 81 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTATCCGGCTTGATTA+AGG | 0.253081 | 8.1:+75554105 | MS.gene060505:CDS |
| TGATGCAGTGTGAAGGTATT+TGG | 0.306995 | 8.1:+75553775 | MS.gene060505:intron |
| TTTACAATGGCAAGACTTGC+AGG | 0.317689 | 8.1:-75555769 | None:intergenic |
| GATCTCGAACGAATGCTTCT+TGG | 0.347459 | 8.1:-75554042 | None:intergenic |
| GTGTTCCAACAATTCTTCTA+AGG | 0.355399 | 8.1:+75553845 | MS.gene060505:CDS |
| ATCGATGTTCATTGTTTATC+CGG | 0.358798 | 8.1:+75554094 | MS.gene060505:CDS |
| TGCATCCTTAGAAGAATTGT+TGG | 0.370772 | 8.1:-75553850 | None:intergenic |
| AGACTTGCAGGCTTCTTAGA+TGG | 0.380145 | 8.1:-75555757 | None:intergenic |
| GAGGGAAGATGTTTCTTCCT+TGG | 0.381917 | 8.1:+75552666 | MS.gene060505:CDS |
| TGACTGGGCAATCAATTTGA+TGG | 0.385583 | 8.1:+75554779 | MS.gene060505:CDS |
| CAGAAGCTGCTCTTCTTGAC+TGG | 0.401025 | 8.1:+75554763 | MS.gene060505:CDS |
| AAAGGACCACTCTCGTATCT+TGG | 0.413686 | 8.1:-75555628 | None:intergenic |
| AGGAGGAAATTCATCATTGC+AGG | 0.421427 | 8.1:-75555407 | None:intergenic |
| TTTCTTCCTTGGATATTAGC+TGG | 0.437424 | 8.1:+75552677 | MS.gene060505:CDS |
| GGGAAGGAGGAGGAGAAGCT+TGG | 0.439480 | 8.1:+75555797 | MS.gene060505:CDS |
| GGCTTGCTCAATTGAAATAC+CGG | 0.440128 | 8.1:-75555736 | None:intergenic |
| GGAAGGAGGAGGAGAAGCTT+GGG | 0.453010 | 8.1:+75555798 | MS.gene060505:CDS |
| TCCTCTTTGTTGAAGTTGAA+AGG | 0.462988 | 8.1:-75555427 | None:intergenic |
| TGGTTTAGAGAGCTTCCAAC+TGG | 0.465706 | 8.1:+75554654 | MS.gene060505:CDS |
| CTGGCACTAGGTACCCTTGT+AGG | 0.471703 | 8.1:-75552787 | None:intergenic |
| CAGTGTTCTTATGATGATAG+AGG | 0.479488 | 8.1:+75553817 | MS.gene060505:CDS |
| TTCGAGATCAGTTAAACAAA+GGG | 0.480003 | 8.1:+75554056 | MS.gene060505:CDS |
| GCTCCATTCTATTCTTCCTA+AGG | 0.486204 | 8.1:-75555527 | None:intergenic |
| GTCAAGAAGAGCAGCTTCTG+TGG | 0.495179 | 8.1:-75554760 | None:intergenic |
| ACGGCGTGCGCAAGTTATGC+AGG | 0.495303 | 8.1:+75555710 | MS.gene060505:CDS |
| GCCTTCTGAGTTTCAGCCTG+AGG | 0.495415 | 8.1:+75552762 | MS.gene060505:CDS |
| TTCTCAAGGACTTCCACCTT+AGG | 0.495514 | 8.1:+75555511 | MS.gene060505:CDS |
| GAATGCGCGCAACGTAGCTA+TGG | 0.499082 | 8.1:+75554836 | MS.gene060505:CDS |
| GTCTTGCCATTGTAAATACT+AGG | 0.506258 | 8.1:+75555776 | MS.gene060505:CDS |
| TCCTTTCAACTTCAACAAAG+AGG | 0.511319 | 8.1:+75555426 | MS.gene060505:CDS |
| GGTACCCTTGTAGGAACCTC+AGG | 0.515998 | 8.1:-75552778 | None:intergenic |
| CGTAAATACCTTAATCAAGC+CGG | 0.519512 | 8.1:-75554113 | None:intergenic |
| CTATGAATTTACCTGGCACT+AGG | 0.520069 | 8.1:-75552799 | None:intergenic |
| TAACAAACCTGTGTCATGTT+GGG | 0.522414 | 8.1:-75554867 | None:intergenic |
| GTTCGAGATCAGTTAAACAA+AGG | 0.524433 | 8.1:+75554055 | MS.gene060505:CDS |
| CCACCTTAGGAAGAATAGAA+TGG | 0.525280 | 8.1:+75555524 | MS.gene060505:CDS |
| TTGCATTGCATCACTTGCTC+CGG | 0.531461 | 8.1:-75554696 | None:intergenic |
| AGAAGAGCAGCTTCTGTGGA+AGG | 0.535601 | 8.1:-75554756 | None:intergenic |
| CAAAAGCAATTGTATTCTGA+AGG | 0.538997 | 8.1:+75553871 | MS.gene060505:CDS |
| TGTAACTTGCAGTGTGGAGA+GGG | 0.539058 | 8.1:+75552648 | MS.gene060505:CDS |
| CTACAAGGGTACCTAGTGCC+AGG | 0.543064 | 8.1:+75552788 | MS.gene060505:CDS |
| CCATTCTATTCTTCCTAAGG+TGG | 0.545441 | 8.1:-75555524 | None:intergenic |
| TTCAGCCTGAGGTTCCTACA+AGG | 0.552164 | 8.1:+75552773 | MS.gene060505:CDS |
| GCCATTGTAAATACTAGGGA+AGG | 0.568232 | 8.1:+75555781 | MS.gene060505:CDS |
| GCGCAAGTTATGCAGGCACC+CGG | 0.570203 | 8.1:+75555717 | MS.gene060505:CDS |
| GAAGATATGACAGCGAACAT+TGG | 0.571920 | 8.1:+75555674 | MS.gene060505:CDS |
| GTCACCATGTGAACAAATTG+AGG | 0.575603 | 8.1:+75555450 | MS.gene060505:CDS |
| TCTTGCCATTGTAAATACTA+GGG | 0.575822 | 8.1:+75555777 | MS.gene060505:CDS |
| AGAAGCTGCTCTTCTTGACT+GGG | 0.576970 | 8.1:+75554764 | MS.gene060505:CDS |
| GCATCCTCAATTTGTTCACA+TGG | 0.578905 | 8.1:-75555454 | None:intergenic |
| CATTGGTCACGATTGAGAAA+CGG | 0.582047 | 8.1:+75555691 | MS.gene060505:CDS |
| ACCTCAGGCTGAAACTCAGA+AGG | 0.584588 | 8.1:-75552763 | None:intergenic |
| AGAGAATCAAGTACACCAGT+TGG | 0.600276 | 8.1:-75554669 | None:intergenic |
| AATGGAGCGTAGAGAAACTT+CGG | 0.600981 | 8.1:+75555542 | MS.gene060505:CDS |
| TTTCGCACCCAACATGACAC+AGG | 0.604770 | 8.1:+75554860 | MS.gene060505:CDS |
| CTACCAAAAGAAAATTCTCA+AGG | 0.605610 | 8.1:+75555497 | MS.gene060505:CDS |
| TTGTAACTTGCAGTGTGGAG+AGG | 0.609827 | 8.1:+75552647 | MS.gene060505:CDS |
| TCTTTGTTGAAGTTGAAAGG+AGG | 0.610113 | 8.1:-75555424 | None:intergenic |
| AGTTGGAAGCTCTCTAAACC+AGG | 0.611737 | 8.1:-75554652 | None:intergenic |
| AGTTGGCCAGCTAATATCCA+AGG | 0.615563 | 8.1:-75552683 | None:intergenic |
| GGCTATTCTCAGCAGTAATG+CGG | 0.618302 | 8.1:-75554021 | None:intergenic |
| GACACGTGTCTCACTTCAGT+TGG | 0.619708 | 8.1:-75552700 | None:intergenic |
| AGTGTTCTTATGATGATAGA+GGG | 0.624124 | 8.1:+75553818 | MS.gene060505:CDS |
| ATTGTAAATACTAGGGAAGG+AGG | 0.630668 | 8.1:+75555784 | MS.gene060505:CDS |
| GTAAATACTAGGGAAGGAGG+AGG | 0.632058 | 8.1:+75555787 | MS.gene060505:CDS |
| AAGATTGCTCTCACATAGCA+TGG | 0.632661 | 8.1:+75555375 | MS.gene060505:CDS |
| TCAGCCTGAGGTTCCTACAA+GGG | 0.635145 | 8.1:+75552774 | MS.gene060505:CDS |
| CTTTAAATGATGCAGTGTGA+AGG | 0.637209 | 8.1:+75553768 | MS.gene060505:intron |
| AGGAAATTCATCATTGCAGG+AGG | 0.637863 | 8.1:-75555404 | None:intergenic |
| TTTCCATGGATGAAGGCAGA+AGG | 0.638432 | 8.1:+75553992 | MS.gene060505:intron |
| AACAAAGGGATAGTGCCACA+TGG | 0.638676 | 8.1:+75554070 | MS.gene060505:CDS |
| AAGCAATTGTATTCTGAAGG+AGG | 0.641065 | 8.1:+75553874 | MS.gene060505:CDS |
| AGAGAAACTTCGGTGCTCCG+AGG | 0.642246 | 8.1:+75555552 | MS.gene060505:CDS |
| TCCTTCCCTAGTATTTACAA+TGG | 0.645832 | 8.1:-75555782 | None:intergenic |
| GCTTGCTCAATTGAAATACC+GGG | 0.650080 | 8.1:-75555735 | None:intergenic |
| TGGAAGGAAGTAACTTGACA+AGG | 0.651985 | 8.1:-75554740 | None:intergenic |
| TTAACAAACCTGTGTCATGT+TGG | 0.653512 | 8.1:-75554868 | None:intergenic |
| ATCTATTGTAACTTGCAGTG+TGG | 0.662855 | 8.1:+75552642 | MS.gene060505:CDS |
| TGTACTTGATTCTCTCACAC+CGG | 0.686660 | 8.1:+75554677 | MS.gene060505:CDS |
| CAATGAACATCGATTCCATG+TGG | 0.724200 | 8.1:-75554085 | None:intergenic |
| GTAACTCCAAGATACGAGAG+TGG | 0.729173 | 8.1:+75555622 | MS.gene060505:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATGAAATTTATGTAATT+TGG | + | chr8.1:75552822-75552841 | MS.gene060505:intron | 15.0% |
| !!! | GATTTTTTTTAGTTTATGTT+TGG | + | chr8.1:75552894-75552913 | MS.gene060505:intron | 15.0% |
| !!! | GTCAATTTTTTTAGTATAAT+TGG | + | chr8.1:75552959-75552978 | MS.gene060505:intron | 15.0% |
| !!! | TAACTATAACTATTTTCTAA+AGG | - | chr8.1:75555649-75555668 | None:intergenic | 15.0% |
| !!! | TCAATTTTGTTTAGAATTTT+TGG | + | chr8.1:75552918-75552937 | MS.gene060505:intron | 15.0% |
| !!! | TTTTTATCATTATCTATTTC+AGG | + | chr8.1:75554629-75554648 | MS.gene060505:intron | 15.0% |
| !! | AAACACTAAGTTTGATTAAT+AGG | + | chr8.1:75554350-75554369 | MS.gene060505:intron | 20.0% |
| !! | AATGATAAAAAGATATGACA+AGG | - | chr8.1:75554620-75554639 | None:intergenic | 20.0% |
| !! | ATATTACAGAACATACTTTA+AGG | - | chr8.1:75553900-75553919 | None:intergenic | 20.0% |
| !! | GGTTGAAAAATAAAAAGATA+CGG | - | chr8.1:75554466-75554485 | None:intergenic | 20.0% |
| !!! | ATAGTTACATGTGAATTTTA+AGG | + | chr8.1:75553956-75553975 | MS.gene060505:intron | 20.0% |
| !!! | TATCTTTTTATTTTTCAACC+TGG | + | chr8.1:75554466-75554485 | MS.gene060505:intron | 20.0% |
| !!! | TTTTAGGCTTTTTATGTAAT+TGG | + | chr8.1:75553257-75553276 | MS.gene060505:intron | 20.0% |
| ! | AAAAGCCTAAAACTTTCTTA+AGG | - | chr8.1:75553249-75553268 | None:intergenic | 25.0% |
| ! | AAAGCCTAAAACTTTCTTAA+GGG | - | chr8.1:75553248-75553267 | None:intergenic | 25.0% |
| ! | AAATTGGTAAATGAGTGAAA+CGG | - | chr8.1:75554984-75555003 | None:intergenic | 25.0% |
| ! | ACTAAGTTTGATTAATAGGA+AGG | + | chr8.1:75554354-75554373 | MS.gene060505:intron | 25.0% |
| ! | CTCATAATTTACTGATAAGT+GGG | + | chr8.1:75554267-75554286 | MS.gene060505:intron | 25.0% |
| ! | TAAATCCTGACTATTATGTA+TGG | + | chr8.1:75553458-75553477 | MS.gene060505:intron | 25.0% |
| ! | TCGTATTTGTCAAATTCATT+TGG | + | chr8.1:75553926-75553945 | MS.gene060505:intron | 25.0% |
| ! | TGCAAACTCAGATAATAAAT+TGG | - | chr8.1:75555000-75555019 | None:intergenic | 25.0% |
| ! | TTCAGTCAAATGAATTTCAT+AGG | - | chr8.1:75554143-75554162 | None:intergenic | 25.0% |
| !! | ATATGTTTAGTCTTTGTTTG+TGG | + | chr8.1:75553108-75553127 | MS.gene060505:intron | 25.0% |
| !! | GATATTTTGTACAATTAGCA+TGG | + | chr8.1:75555082-75555101 | MS.gene060505:intron | 25.0% |
| !! | TGCGTAACTTGTAAATTATT+TGG | + | chr8.1:75554198-75554217 | MS.gene060505:intron | 25.0% |
| !! | TGTATTTTTCGTTTCACTTT+TGG | - | chr8.1:75555215-75555234 | None:intergenic | 25.0% |
| !! | TTTAAAACCAGAAATGTTTC+TGG | + | chr8.1:75554937-75554956 | MS.gene060505:intron | 25.0% |
| !!! | GTTACTTTTGATAGATTCAA+TGG | + | chr8.1:75552727-75552746 | MS.gene060505:CDS | 25.0% |
| !!! | GTTGATTATTTTTCTCAAAC+TGG | + | chr8.1:75554580-75554599 | MS.gene060505:intron | 25.0% |
| !!! | TAATATCAACCAAAGCATTT+TGG | - | chr8.1:75553328-75553347 | None:intergenic | 25.0% |
| AAGCCTAAAACTTTCTTAAG+GGG | - | chr8.1:75553247-75553266 | None:intergenic | 30.0% | |
| AATTGGTAAATGAGTGAAAC+GGG | - | chr8.1:75554983-75555002 | None:intergenic | 30.0% | |
| AGTGTTCTTATGATGATAGA+GGG | + | chr8.1:75553818-75553837 | MS.gene060505:CDS | 30.0% | |
| ATCGATGTTCATTGTTTATC+CGG | + | chr8.1:75554094-75554113 | MS.gene060505:CDS | 30.0% | |
| CAAAAGCAATTGTATTCTGA+AGG | + | chr8.1:75553871-75553890 | MS.gene060505:CDS | 30.0% | |
| CCAACTCAAAATACAATGTA+AGG | + | chr8.1:75553587-75553606 | MS.gene060505:intron | 30.0% | |
| CTACCAAAAGAAAATTCTCA+AGG | + | chr8.1:75555497-75555516 | MS.gene060505:CDS | 30.0% | |
| GCTCATAATTTACTGATAAG+TGG | + | chr8.1:75554266-75554285 | MS.gene060505:intron | 30.0% | |
| GTATGGAAAACACTGTTAAA+TGG | + | chr8.1:75553475-75553494 | MS.gene060505:intron | 30.0% | |
| TAACCAGGTTATAGACTTAT+AGG | - | chr8.1:75553544-75553563 | None:intergenic | 30.0% | |
| TAATCAACCAGAAACATTTC+TGG | - | chr8.1:75554947-75554966 | None:intergenic | 30.0% | |
| TCATGTTCTATGAATTTACC+TGG | - | chr8.1:75552809-75552828 | None:intergenic | 30.0% | |
| TCTTGCCATTGTAAATACTA+GGG | + | chr8.1:75555777-75555796 | MS.gene060505:CDS | 30.0% | |
| TTAACATTTCCAAAGCCTTT+CGG | + | chr8.1:75554170-75554189 | MS.gene060505:intron | 30.0% | |
| TTCGAGATCAGTTAAACAAA+GGG | + | chr8.1:75554056-75554075 | MS.gene060505:CDS | 30.0% | |
| TTGATATCACCAAAATGCTT+TGG | + | chr8.1:75553316-75553335 | MS.gene060505:intron | 30.0% | |
| ! | AAACTAGTTTGTCAGATTTG+TGG | + | chr8.1:75553648-75553667 | MS.gene060505:intron | 30.0% |
| ! | AGTCCTTGAGAATTTTCTTT+TGG | - | chr8.1:75555503-75555522 | None:intergenic | 30.0% |
| ! | ATTCCCCTTAAGAAAGTTTT+AGG | + | chr8.1:75553241-75553260 | MS.gene060505:intron | 30.0% |
| ! | CCAACGCATACAAAATTTTA+AGG | - | chr8.1:75554241-75554260 | None:intergenic | 30.0% |
| ! | CCTTAAAATTTTGTATGCGT+TGG | + | chr8.1:75554238-75554257 | MS.gene060505:intron | 30.0% |
| ! | CTGTTCATTTTCAACAACAT+CGG | - | chr8.1:75554805-75554824 | None:intergenic | 30.0% |
| ! | GATAGATTCAATGGTTTTCT+TGG | + | chr8.1:75552736-75552755 | MS.gene060505:CDS | 30.0% |
| ! | GTTTTCCATACATAATAGTC+AGG | - | chr8.1:75553466-75553485 | None:intergenic | 30.0% |
| ! | TATCTTGCATTTTGCAACTT+AGG | + | chr8.1:75553617-75553636 | MS.gene060505:intron | 30.0% |
| !! | CCTTACATTGTATTTTGAGT+TGG | - | chr8.1:75553590-75553609 | None:intergenic | 30.0% |
| !!! | TTCAGATCTTTTTCAAGTGA+TGG | + | chr8.1:75555598-75555617 | MS.gene060505:CDS | 30.0% |
| AAGTTACGCAAATAACCGAA+AGG | - | chr8.1:75554188-75554207 | None:intergenic | 35.0% | |
| ACTTTCTTGTGAAATCCAGA+TGG | + | chr8.1:75555249-75555268 | MS.gene060505:intron | 35.0% | |
| ATCATTATCTATTTCAGGCC+TGG | + | chr8.1:75554634-75554653 | MS.gene060505:intron | 35.0% | |
| ATTGTAAATACTAGGGAAGG+AGG | + | chr8.1:75555784-75555803 | MS.gene060505:CDS | 35.0% | |
| CACACTGCATCATTTAAAGA+CGG | - | chr8.1:75553767-75553786 | None:intergenic | 35.0% | |
| CAGTGTTCTTATGATGATAG+AGG | + | chr8.1:75553817-75553836 | MS.gene060505:CDS | 35.0% | |
| CATGAATCAATGCAGTTAAG+GGG | - | chr8.1:75555279-75555298 | None:intergenic | 35.0% | |
| CGTAAATACCTTAATCAAGC+CGG | - | chr8.1:75554116-75554135 | None:intergenic | 35.0% | |
| CTTTAAATGATGCAGTGTGA+AGG | + | chr8.1:75553768-75553787 | MS.gene060505:intron | 35.0% | |
| GCATGAATCAATGCAGTTAA+GGG | - | chr8.1:75555280-75555299 | None:intergenic | 35.0% | |
| GTACAATTAGCATGGCATAA+TGG | + | chr8.1:75555090-75555109 | MS.gene060505:intron | 35.0% | |
| GTACCTATAAGTCTATAACC+TGG | + | chr8.1:75553538-75553557 | MS.gene060505:intron | 35.0% | |
| GTCTAATTTCATGCTTTCCA+TGG | + | chr8.1:75553978-75553997 | MS.gene060505:intron | 35.0% | |
| GTCTTGCCATTGTAAATACT+AGG | + | chr8.1:75555776-75555795 | MS.gene060505:CDS | 35.0% | |
| GTGTTCCAACAATTCTTCTA+AGG | + | chr8.1:75553845-75553864 | MS.gene060505:CDS | 35.0% | |
| GTTCGAGATCAGTTAAACAA+AGG | + | chr8.1:75554055-75554074 | MS.gene060505:CDS | 35.0% | |
| TAACAAACCTGTGTCATGTT+GGG | - | chr8.1:75554870-75554889 | None:intergenic | 35.0% | |
| TATCTATTAGAACAGCAACC+AGG | - | chr8.1:75554487-75554506 | None:intergenic | 35.0% | |
| TCCTCTTTGTTGAAGTTGAA+AGG | - | chr8.1:75555430-75555449 | None:intergenic | 35.0% | |
| TCCTTCCCTAGTATTTACAA+TGG | - | chr8.1:75555785-75555804 | None:intergenic | 35.0% | |
| TCCTTTCAACTTCAACAAAG+AGG | + | chr8.1:75555426-75555445 | MS.gene060505:CDS | 35.0% | |
| TCTTTGTTGAAGTTGAAAGG+AGG | - | chr8.1:75555427-75555446 | None:intergenic | 35.0% | |
| TGCATCCTTAGAAGAATTGT+TGG | - | chr8.1:75553853-75553872 | None:intergenic | 35.0% | |
| TGCATGAATCAATGCAGTTA+AGG | - | chr8.1:75555281-75555300 | None:intergenic | 35.0% | |
| TTAACAAACCTGTGTCATGT+TGG | - | chr8.1:75554871-75554890 | None:intergenic | 35.0% | |
| TTTCTTCCTTGGATATTAGC+TGG | + | chr8.1:75552677-75552696 | MS.gene060505:CDS | 35.0% | |
| ! | AAGCAATTGTATTCTGAAGG+AGG | + | chr8.1:75553874-75553893 | MS.gene060505:CDS | 35.0% |
| ! | ATCTATTGTAACTTGCAGTG+TGG | + | chr8.1:75552642-75552661 | MS.gene060505:CDS | 35.0% |
| ! | TTGTTTATCCGGCTTGATTA+AGG | + | chr8.1:75554105-75554124 | MS.gene060505:CDS | 35.0% |
| !!! | AATTTTGTATGCGTTGGCTA+TGG | + | chr8.1:75554244-75554263 | MS.gene060505:intron | 35.0% |
| !!! | ACATGCTTTTTTCAGTAACC+AGG | - | chr8.1:75553559-75553578 | None:intergenic | 35.0% |
| AAGATTGCTCTCACATAGCA+TGG | + | chr8.1:75555375-75555394 | MS.gene060505:CDS | 40.0% | |
| AATGGAGCGTAGAGAAACTT+CGG | + | chr8.1:75555542-75555561 | MS.gene060505:CDS | 40.0% | |
| ACATGTTCATCTGAGTGGTA+AGG | + | chr8.1:75553402-75553421 | MS.gene060505:intron | 40.0% | |
| AGAGAATCAAGTACACCAGT+TGG | - | chr8.1:75554672-75554691 | None:intergenic | 40.0% | |
| AGATGTTTGATCACGGACTT+CGG | - | chr8.1:75554421-75554440 | None:intergenic | 40.0% | |
| AGGAAATTCATCATTGCAGG+AGG | - | chr8.1:75555407-75555426 | None:intergenic | 40.0% | |
| AGGAGGAAATTCATCATTGC+AGG | - | chr8.1:75555410-75555429 | None:intergenic | 40.0% | |
| CATTGGTCACGATTGAGAAA+CGG | + | chr8.1:75555691-75555710 | MS.gene060505:CDS | 40.0% | |
| CCACCTTAGGAAGAATAGAA+TGG | + | chr8.1:75555524-75555543 | MS.gene060505:CDS | 40.0% | |
| CCATTCTATTCTTCCTAAGG+TGG | - | chr8.1:75555527-75555546 | None:intergenic | 40.0% | |
| CTATGAATTTACCTGGCACT+AGG | - | chr8.1:75552802-75552821 | None:intergenic | 40.0% | |
| GAAGATATGACAGCGAACAT+TGG | + | chr8.1:75555674-75555693 | MS.gene060505:CDS | 40.0% | |
| GCCATTGTAAATACTAGGGA+AGG | + | chr8.1:75555781-75555800 | MS.gene060505:CDS | 40.0% | |
| GCTCCATTCTATTCTTCCTA+AGG | - | chr8.1:75555530-75555549 | None:intergenic | 40.0% | |
| GCTGCAATAACTTGATCATG+TGG | + | chr8.1:75553670-75553689 | MS.gene060505:intron | 40.0% | |
| GCTTGCTCAATTGAAATACC+GGG | - | chr8.1:75555738-75555757 | None:intergenic | 40.0% | |
| GGCTCTACTATAGAAGATTC+TGG | + | chr8.1:75553129-75553148 | MS.gene060505:intron | 40.0% | |
| GTAAATGAGTGAAACGGGAT+TGG | - | chr8.1:75554978-75554997 | None:intergenic | 40.0% | |
| GTCACCATGTGAACAAATTG+AGG | + | chr8.1:75555450-75555469 | MS.gene060505:CDS | 40.0% | |
| TGACTGGGCAATCAATTTGA+TGG | + | chr8.1:75554779-75554798 | MS.gene060505:CDS | 40.0% | |
| TGGAAGGAAGTAACTTGACA+AGG | - | chr8.1:75554743-75554762 | None:intergenic | 40.0% | |
| TGTACTTGATTCTCTCACAC+CGG | + | chr8.1:75554677-75554696 | MS.gene060505:CDS | 40.0% | |
| TTCATGCTTTCCATGGATGA+AGG | + | chr8.1:75553985-75554004 | MS.gene060505:intron | 40.0% | |
| TTTACAATGGCAAGACTTGC+AGG | - | chr8.1:75555772-75555791 | None:intergenic | 40.0% | |
| TTTCGACATGTTCATCTGAG+TGG | + | chr8.1:75553397-75553416 | MS.gene060505:intron | 40.0% | |
| ! | AACCTCTCACCATTAGCTTA+AGG | - | chr8.1:75553438-75553457 | None:intergenic | 40.0% |
| ! | GCATCCTCAATTTGTTCACA+TGG | - | chr8.1:75555457-75555476 | None:intergenic | 40.0% |
| ! | GGCTTGCTCAATTGAAATAC+CGG | - | chr8.1:75555739-75555758 | None:intergenic | 40.0% |
| !! | CAATGAACATCGATTCCATG+TGG | - | chr8.1:75554088-75554107 | None:intergenic | 40.0% |
| !! | TGATGCAGTGTGAAGGTATT+TGG | + | chr8.1:75553775-75553794 | MS.gene060505:intron | 40.0% |
| !!! | GTCTCGATTCCTTTTTTCCT+CGG | - | chr8.1:75555572-75555591 | None:intergenic | 40.0% |
| AAAGGACCACTCTCGTATCT+TGG | - | chr8.1:75555631-75555650 | None:intergenic | 45.0% | |
| AACAAAGGGATAGTGCCACA+TGG | + | chr8.1:75554070-75554089 | MS.gene060505:CDS | 45.0% | |
| ACTCGGACACCTTAAGCTAA+TGG | + | chr8.1:75553426-75553445 | MS.gene060505:intron | 45.0% | |
| AGAAGCTGCTCTTCTTGACT+GGG | + | chr8.1:75554764-75554783 | MS.gene060505:CDS | 45.0% | |
| AGACTTGCAGGCTTCTTAGA+TGG | - | chr8.1:75555760-75555779 | None:intergenic | 45.0% | |
| AGTTGGAAGCTCTCTAAACC+AGG | - | chr8.1:75554655-75554674 | None:intergenic | 45.0% | |
| AGTTGGCCAGCTAATATCCA+AGG | - | chr8.1:75552686-75552705 | None:intergenic | 45.0% | |
| ATTCCTTCTGCCTTCATCCA+TGG | - | chr8.1:75553998-75554017 | None:intergenic | 45.0% | |
| CACCTTAAGCTAATGGTGAG+AGG | + | chr8.1:75553433-75553452 | MS.gene060505:intron | 45.0% | |
| CATCTGAGTGGTAAGGAACT+CGG | + | chr8.1:75553409-75553428 | MS.gene060505:intron | 45.0% | |
| CGCAAATAACCGAAAGGCTT+TGG | - | chr8.1:75554182-75554201 | None:intergenic | 45.0% | |
| GACTTCGGCCATTTATGCAT+AGG | - | chr8.1:75554406-75554425 | None:intergenic | 45.0% | |
| GAGCACGAGATGTTTGATCA+CGG | - | chr8.1:75554428-75554447 | None:intergenic | 45.0% | |
| GAGGGAAGATGTTTCTTCCT+TGG | + | chr8.1:75552666-75552685 | MS.gene060505:CDS | 45.0% | |
| GATCTCGAACGAATGCTTCT+TGG | - | chr8.1:75554045-75554064 | None:intergenic | 45.0% | |
| GCTGGAGACCTATGCATAAA+TGG | + | chr8.1:75554395-75554414 | MS.gene060505:intron | 45.0% | |
| GGAAAAAAGGAATCGAGACG+AGG | + | chr8.1:75555573-75555592 | MS.gene060505:CDS | 45.0% | |
| GGCTATTCTCAGCAGTAATG+CGG | - | chr8.1:75554024-75554043 | None:intergenic | 45.0% | |
| GTAAATACTAGGGAAGGAGG+AGG | + | chr8.1:75555787-75555806 | MS.gene060505:CDS | 45.0% | |
| GTAACTCCAAGATACGAGAG+TGG | + | chr8.1:75555622-75555641 | MS.gene060505:CDS | 45.0% | |
| TGGTTTAGAGAGCTTCCAAC+TGG | + | chr8.1:75554654-75554673 | MS.gene060505:CDS | 45.0% | |
| TTCTCAAGGACTTCCACCTT+AGG | + | chr8.1:75555511-75555530 | MS.gene060505:CDS | 45.0% | |
| TTGCATTGCATCACTTGCTC+CGG | - | chr8.1:75554699-75554718 | None:intergenic | 45.0% | |
| TTTCCATGGATGAAGGCAGA+AGG | + | chr8.1:75553992-75554011 | MS.gene060505:intron | 45.0% | |
| ! | TGTAACTTGCAGTGTGGAGA+GGG | + | chr8.1:75552648-75552667 | MS.gene060505:CDS | 45.0% |
| ! | TTGTAACTTGCAGTGTGGAG+AGG | + | chr8.1:75552647-75552666 | MS.gene060505:CDS | 45.0% |
| !!! | TCTTTTTTAAAATATTATAT+TGG | - | chr8.1:75553074-75553093 | None:intergenic | 5.0% |
| AAGTGGGCAGTTTGTCTGAG+CGG | + | chr8.1:75554283-75554302 | MS.gene060505:intron | 50.0% | |
| ACCTCAGGCTGAAACTCAGA+AGG | - | chr8.1:75552766-75552785 | None:intergenic | 50.0% | |
| AGAAGAGCAGCTTCTGTGGA+AGG | - | chr8.1:75554759-75554778 | None:intergenic | 50.0% | |
| ATAGGTCTCCAGCTGTAGAG+TGG | - | chr8.1:75554388-75554407 | None:intergenic | 50.0% | |
| CAGAAGCTGCTCTTCTTGAC+TGG | + | chr8.1:75554763-75554782 | MS.gene060505:CDS | 50.0% | |
| GACACGTGTCTCACTTCAGT+TGG | - | chr8.1:75552703-75552722 | None:intergenic | 50.0% | |
| GGAGATCAGACGCTGTTATG+CGG | + | chr8.1:75553496-75553515 | MS.gene060505:intron | 50.0% | |
| GTCAAGAAGAGCAGCTTCTG+TGG | - | chr8.1:75554763-75554782 | None:intergenic | 50.0% | |
| TACTGCATCCACTCTACAGC+TGG | + | chr8.1:75554377-75554396 | MS.gene060505:intron | 50.0% | |
| TCAGCCTGAGGTTCCTACAA+GGG | + | chr8.1:75552774-75552793 | MS.gene060505:CDS | 50.0% | |
| TTCAGCCTGAGGTTCCTACA+AGG | + | chr8.1:75552773-75552792 | MS.gene060505:CDS | 50.0% | |
| TTTCGCACCCAACATGACAC+AGG | + | chr8.1:75554860-75554879 | MS.gene060505:CDS | 50.0% | |
| !! | TTCGGTGCTCCGAGGAAAAA+AGG | + | chr8.1:75555560-75555579 | MS.gene060505:CDS | 50.0% |
| AGTGGGCAGTTTGTCTGAGC+GGG | + | chr8.1:75554284-75554303 | MS.gene060505:intron | 55.0% | |
| CAGTTAAGGGGTCTGCCATC+TGG | - | chr8.1:75555267-75555286 | None:intergenic | 55.0% | |
| CTGGCACTAGGTACCCTTGT+AGG | - | chr8.1:75552790-75552809 | None:intergenic | 55.0% | |
| GAATGCGCGCAACGTAGCTA+TGG | + | chr8.1:75554836-75554855 | MS.gene060505:CDS | 55.0% | |
| GCCTTCTGAGTTTCAGCCTG+AGG | + | chr8.1:75552762-75552781 | MS.gene060505:CDS | 55.0% | |
| GGAAGGAGGAGGAGAAGCTT+GGG | + | chr8.1:75555798-75555817 | MS.gene060505:CDS | 55.0% | |
| GGTACCCTTGTAGGAACCTC+AGG | - | chr8.1:75552781-75552800 | None:intergenic | 55.0% | |
| !! | AGAGAAACTTCGGTGCTCCG+AGG | + | chr8.1:75555552-75555571 | MS.gene060505:CDS | 55.0% |
| !! | CTACAAGGGTACCTAGTGCC+AGG | + | chr8.1:75552788-75552807 | MS.gene060505:CDS | 55.0% |
| ACGGCGTGCGCAAGTTATGC+AGG | + | chr8.1:75555710-75555729 | MS.gene060505:CDS | 60.0% | |
| GAGCGGGGAAGGTTGCTCAA+GGG | + | chr8.1:75554300-75554319 | MS.gene060505:intron | 60.0% | |
| GCAGTTTGTCTGAGCGGGGA+AGG | + | chr8.1:75554289-75554308 | MS.gene060505:intron | 60.0% | |
| GCGCAAGTTATGCAGGCACC+CGG | + | chr8.1:75555717-75555736 | MS.gene060505:CDS | 60.0% | |
| GGGAAGGAGGAGGAGAAGCT+TGG | + | chr8.1:75555797-75555816 | MS.gene060505:CDS | 60.0% | |
| GTGGGCAGTTTGTCTGAGCG+GGG | + | chr8.1:75554285-75554304 | MS.gene060505:intron | 60.0% | |
| TGAGCGGGGAAGGTTGCTCA+AGG | + | chr8.1:75554299-75554318 | MS.gene060505:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 75552623 | 75555825 | 75552623 | ID=MS.gene060505 |
| chr8.1 | mRNA | 75552623 | 75555825 | 75552623 | ID=MS.gene060505.t1;Parent=MS.gene060505 |
| chr8.1 | exon | 75552623 | 75552809 | 75552623 | ID=MS.gene060505.t1.exon1;Parent=MS.gene060505.t1 |
| chr8.1 | CDS | 75552623 | 75552809 | 75552623 | ID=cds.MS.gene060505.t1;Parent=MS.gene060505.t1 |
| chr8.1 | exon | 75553783 | 75553903 | 75553783 | ID=MS.gene060505.t1.exon2;Parent=MS.gene060505.t1 |
| chr8.1 | CDS | 75553783 | 75553903 | 75553783 | ID=cds.MS.gene060505.t1;Parent=MS.gene060505.t1 |
| chr8.1 | exon | 75554007 | 75554126 | 75554007 | ID=MS.gene060505.t1.exon3;Parent=MS.gene060505.t1 |
| chr8.1 | CDS | 75554007 | 75554126 | 75554007 | ID=cds.MS.gene060505.t1;Parent=MS.gene060505.t1 |
| chr8.1 | exon | 75554651 | 75554881 | 75554651 | ID=MS.gene060505.t1.exon4;Parent=MS.gene060505.t1 |
| chr8.1 | CDS | 75554651 | 75554881 | 75554651 | ID=cds.MS.gene060505.t1;Parent=MS.gene060505.t1 |
| chr8.1 | exon | 75555340 | 75555825 | 75555340 | ID=MS.gene060505.t1.exon5;Parent=MS.gene060505.t1 |
| chr8.1 | CDS | 75555340 | 75555825 | 75555340 | ID=cds.MS.gene060505.t1;Parent=MS.gene060505.t1 |
| Gene Sequence |
| Protein sequence |
