AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene067790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067790.t1 MTR_7g085390 98.750 480 6 0 1 480 1 480 0.0 975
MS.gene067790.t1 MTR_6g032820 79.176 437 88 3 1 434 1 437 0.0 705
MS.gene067790.t1 MTR_4g112025 55.765 477 206 2 3 474 8 484 0.0 545
MS.gene067790.t1 MTR_1g053320 53.975 478 218 2 4 479 8 485 0.0 525
MS.gene067790.t1 MTR_1g010120 54.280 479 210 5 1 474 1 475 1.25e-174 499
MS.gene067790.t1 MTR_8g092070 54.503 433 194 2 23 454 31 461 2.42e-173 499
MS.gene067790.t1 MTR_3g108600 52.941 459 186 5 21 471 26 462 4.00e-158 457
MS.gene067790.t1 MTR_3g095050 49.895 475 230 6 9 479 15 485 8.63e-158 457
MS.gene067790.t1 MTR_4g124440 51.562 448 208 5 25 468 27 469 1.54e-154 449
MS.gene067790.t1 MTR_2g027560 50.345 435 208 5 24 455 26 455 6.70e-154 447
MS.gene067790.t1 MTR_4g134280 49.596 371 174 5 114 477 2 366 1.61e-122 362
MS.gene067790.t1 MTR_3g031770 44.828 435 232 7 24 457 25 452 2.57e-118 356
MS.gene067790.t1 MTR_3g116510 33.261 460 278 19 8 450 7 454 4.21e-62 209
MS.gene067790.t1 MTR_1g031900 32.648 438 266 16 26 450 24 445 6.15e-61 207
MS.gene067790.t1 MTR_1g031900 32.648 438 266 16 26 450 24 445 1.47e-60 206
MS.gene067790.t1 MTR_4g069940 32.479 468 275 19 8 450 8 459 1.24e-58 200
MS.gene067790.t1 MTR_7g026340 34.529 446 257 20 23 450 20 448 2.28e-57 196
MS.gene067790.t1 MTR_5g085580 31.897 464 255 18 26 450 25 466 1.04e-56 195
MS.gene067790.t1 MTR_6g088885 31.155 459 276 18 6 442 11 451 4.48e-56 194
MS.gene067790.t1 MTR_4g076255 34.663 326 192 9 24 346 23 330 1.11e-55 189
MS.gene067790.t1 MTR_4g076470 34.421 337 202 9 9 342 4 324 2.05e-55 188
MS.gene067790.t1 MTR_4g088155 30.804 448 274 19 26 450 23 457 1.20e-54 189
MS.gene067790.t1 MTR_4g076430 33.531 337 205 9 9 342 4 324 6.82e-54 184
MS.gene067790.t1 MTR_4g076490 35.077 325 193 9 26 348 97 405 9.72e-54 186
MS.gene067790.t1 MTR_4g076440 32.164 342 213 9 9 347 4 329 2.31e-53 182
MS.gene067790.t1 MTR_2g034480 31.844 358 227 7 7 357 3 350 9.86e-53 182
MS.gene067790.t1 MTR_1g077990 34.431 334 198 11 23 347 28 349 1.31e-52 183
MS.gene067790.t1 MTR_3g065460 30.023 443 271 16 26 450 24 445 1.40e-52 185
MS.gene067790.t1 MTR_1g056640 30.407 467 269 20 26 450 38 490 1.88e-52 184
MS.gene067790.t1 MTR_1g007810 35.549 346 194 15 10 340 1 332 6.79e-52 180
MS.gene067790.t1 MTR_4g010200 33.333 354 215 12 5 348 12 354 1.34e-51 180
MS.gene067790.t1 MTR_1g052430 33.851 322 197 9 25 342 31 340 1.50e-51 180
MS.gene067790.t1 MTR_1g022160 30.022 463 274 17 26 450 24 474 2.92e-51 181
MS.gene067790.t1 MTR_1g022160 29.935 461 273 17 26 448 24 472 1.74e-50 179
MS.gene067790.t1 MTR_4g083500 29.053 475 291 15 19 464 37 494 2.38e-50 180
MS.gene067790.t1 MTR_7g081350 31.714 350 218 12 1 344 1 335 2.52e-50 175
MS.gene067790.t1 MTR_2g034440 33.645 321 200 7 26 343 22 332 8.80e-50 173
MS.gene067790.t1 MTR_2g034470 33.131 329 204 7 26 350 30 346 1.48e-49 173
MS.gene067790.t1 MTR_1g022160 29.890 455 269 17 26 442 24 466 1.78e-49 176
MS.gene067790.t1 MTR_8g085720 29.299 471 284 19 3 450 4 448 5.34e-49 175
MS.gene067790.t1 MTR_2g034470 33.758 314 192 7 41 350 10 311 1.33e-48 170
MS.gene067790.t1 MTR_3g080410 35.276 326 186 12 24 337 24 336 1.62e-48 171
MS.gene067790.t1 MTR_5g078200 29.452 438 280 14 26 450 23 444 2.34e-48 176
MS.gene067790.t1 MTR_4g114850 32.229 332 204 11 27 348 27 347 3.27e-48 170
MS.gene067790.t1 MTR_3g083580 28.817 465 288 19 3 448 4 444 5.18e-48 172
MS.gene067790.t1 MTR_4g114850 32.229 332 204 11 27 348 27 347 6.06e-48 170
MS.gene067790.t1 MTR_4g114850 32.229 332 204 11 27 348 27 347 6.14e-48 169
MS.gene067790.t1 MTR_4g132280 29.318 440 278 15 26 450 45 466 6.97e-48 173
MS.gene067790.t1 MTR_8g012400 29.252 441 283 17 27 450 30 458 1.36e-47 171
MS.gene067790.t1 MTR_4g076570 32.121 330 207 9 24 350 20 335 1.60e-47 168
MS.gene067790.t1 MTR_7g081370 31.792 346 203 12 3 344 7 323 4.50e-47 166
MS.gene067790.t1 MTR_4g076500 33.025 324 198 11 24 342 76 385 9.80e-47 167
MS.gene067790.t1 MTR_4g084480 31.933 357 222 12 1 348 8 352 1.82e-46 166
MS.gene067790.t1 MTR_4g084480 31.933 357 222 12 1 348 8 352 2.06e-46 166
MS.gene067790.t1 MTR_4g084480 31.933 357 222 12 1 348 1 345 2.88e-46 165
MS.gene067790.t1 MTR_4g052970 31.373 357 221 15 25 370 28 371 5.84e-46 164
MS.gene067790.t1 MTR_5g078200 29.245 424 271 14 40 450 4 411 8.52e-46 169
MS.gene067790.t1 MTR_2g086530 31.445 353 219 14 8 350 10 349 6.24e-45 162
MS.gene067790.t1 MTR_2g086530 32.132 333 204 13 27 350 9 328 6.27e-45 161
MS.gene067790.t1 MTR_3g116510 35.258 329 191 15 135 450 1 320 3.56e-44 158
MS.gene067790.t1 MTR_1g022160 32.036 334 207 11 26 349 24 347 1.30e-42 156
MS.gene067790.t1 MTR_8g102340 30.966 352 222 12 93 434 62 402 2.38e-42 157
MS.gene067790.t1 MTR_2g019345 32.710 321 195 11 26 337 24 332 7.05e-42 154
MS.gene067790.t1 MTR_7g053500 27.088 443 293 18 27 450 27 458 1.23e-40 152
MS.gene067790.t1 MTR_8g012400 29.412 374 236 16 93 450 17 378 2.83e-36 138
MS.gene067790.t1 MTR_7g053500 28.954 373 236 17 96 450 20 381 1.19e-33 131
MS.gene067790.t1 MTR_5g081720 27.469 324 213 13 43 357 54 364 6.81e-26 109
MS.gene067790.t1 MTR_4g036680 31.132 106 68 3 241 345 75 176 1.60e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067790.t1 AT1G64760 74.889 450 109 2 6 455 8 453 0.0 692
MS.gene067790.t1 AT1G64760 74.889 450 109 2 6 455 8 453 0.0 692
MS.gene067790.t1 AT2G19440 74.444 450 112 2 6 455 3 449 0.0 691
MS.gene067790.t1 AT2G19440 74.444 450 112 2 6 455 3 449 0.0 691
MS.gene067790.t1 AT3G04010 68.151 449 141 2 23 470 30 477 0.0 631
MS.gene067790.t1 AT5G18220 66.245 474 148 5 9 477 13 479 0.0 627
MS.gene067790.t1 AT3G24330 52.101 476 225 3 6 479 19 493 2.47e-175 502
MS.gene067790.t1 AT5G64790 55.727 454 191 3 6 458 15 459 2.33e-174 499
MS.gene067790.t1 AT4G31140 53.623 483 210 7 6 479 6 483 3.23e-174 498
MS.gene067790.t1 AT5G58090 53.275 458 207 5 20 473 16 470 5.08e-168 482
MS.gene067790.t1 AT5G20870 52.489 442 195 6 23 454 27 463 3.63e-150 438
MS.gene067790.t1 AT4G17180 48.864 440 212 5 24 461 23 451 1.21e-146 428
MS.gene067790.t1 AT5G58480 44.519 447 236 7 23 466 23 460 1.58e-124 371
MS.gene067790.t1 AT5G55180 33.409 440 268 15 26 450 27 456 7.91e-67 222
MS.gene067790.t1 AT5G55180 34.038 426 256 15 26 436 27 442 1.36e-66 221
MS.gene067790.t1 AT2G16230 33.790 438 264 15 26 450 25 449 3.26e-65 219
MS.gene067790.t1 AT2G05790 33.333 462 253 21 26 450 25 468 8.32e-64 214
MS.gene067790.t1 AT3G55430 34.240 441 260 17 23 450 26 449 3.39e-63 212
MS.gene067790.t1 AT2G39640 32.522 452 269 17 9 448 13 440 2.21e-60 207
MS.gene067790.t1 AT4G26830 31.798 456 283 17 10 450 9 451 2.35e-60 204
MS.gene067790.t1 AT4G26830 32.273 440 270 17 26 450 29 455 3.81e-59 201
MS.gene067790.t1 AT2G01630 31.111 450 274 17 26 461 23 450 4.52e-58 200
MS.gene067790.t1 AT2G01630 30.716 433 269 16 26 444 23 438 9.13e-57 195
MS.gene067790.t1 AT3G13560 33.108 444 267 15 20 450 20 446 1.44e-56 196
MS.gene067790.t1 AT3G13560 33.108 444 267 15 20 450 20 446 1.44e-56 196
MS.gene067790.t1 AT3G13560 33.108 444 267 15 20 450 20 446 1.44e-56 196
MS.gene067790.t1 AT3G13560 33.108 444 267 15 20 450 20 446 1.44e-56 196
MS.gene067790.t1 AT3G13560 33.108 444 267 15 20 450 20 446 1.44e-56 196
MS.gene067790.t1 AT4G34480 33.030 439 263 17 26 450 26 447 2.20e-56 195
MS.gene067790.t1 AT3G07320 32.200 441 271 18 27 450 26 455 6.40e-56 193
MS.gene067790.t1 AT1G66250 30.543 442 269 15 26 450 32 452 1.41e-55 193
MS.gene067790.t1 AT5G24318 29.122 467 287 19 7 450 10 455 4.52e-55 191
MS.gene067790.t1 AT5G24318 29.322 457 279 19 7 440 10 445 1.35e-54 189
MS.gene067790.t1 AT4G16260 31.609 348 218 8 9 348 1 336 1.37e-53 184
MS.gene067790.t1 AT1G11820 30.023 443 271 16 26 450 44 465 1.45e-53 188
MS.gene067790.t1 AT4G14080 31.236 445 273 20 26 450 42 473 3.92e-53 186
MS.gene067790.t1 AT5G56590 29.515 454 279 17 20 451 20 454 4.60e-53 186
MS.gene067790.t1 AT1G11820 29.977 437 267 16 26 444 44 459 1.83e-52 184
MS.gene067790.t1 AT4G16260 33.228 316 196 8 36 348 4 307 2.66e-52 179
MS.gene067790.t1 AT3G23770 31.696 448 270 21 26 450 37 471 3.48e-52 183
MS.gene067790.t1 AT3G57270 33.951 324 200 9 26 346 27 339 8.34e-51 176
MS.gene067790.t1 AT3G57260 32.749 342 209 10 9 346 14 338 2.49e-50 175
MS.gene067790.t1 AT3G57260 32.749 342 209 10 9 346 30 354 3.15e-50 175
MS.gene067790.t1 AT5G42720 34.808 339 200 12 11 337 8 337 8.55e-50 176
MS.gene067790.t1 AT2G26600 31.461 356 220 12 21 363 29 373 9.34e-50 175
MS.gene067790.t1 AT1G30080 32.174 345 212 11 4 337 12 345 1.35e-48 171
MS.gene067790.t1 AT1G30080 32.174 345 212 11 4 337 12 345 1.60e-48 172
MS.gene067790.t1 AT3G15800 32.647 340 207 12 20 348 37 365 3.68e-48 171
MS.gene067790.t1 AT5G42100 35.119 336 195 13 23 346 24 348 1.10e-47 170
MS.gene067790.t1 AT5G42100 35.119 336 195 13 23 346 24 348 1.47e-47 170
MS.gene067790.t1 AT4G34480 36.533 323 182 14 26 337 26 336 2.45e-47 167
MS.gene067790.t1 AT1G32860 33.538 325 192 12 26 338 29 341 1.03e-46 167
MS.gene067790.t1 AT2G01630 31.138 334 209 11 26 348 23 346 5.47e-46 165
MS.gene067790.t1 AT5G24318 30.460 348 215 13 7 342 10 342 8.76e-46 164
MS.gene067790.t1 AT4G29360 26.501 483 305 16 5 452 10 477 4.85e-45 165
MS.gene067790.t1 AT4G18340 31.471 340 211 12 9 338 17 344 2.53e-44 160
MS.gene067790.t1 AT3G57240 31.707 328 201 11 19 342 28 336 3.20e-44 159
MS.gene067790.t1 AT4G18340 31.176 340 212 12 9 338 17 344 4.19e-44 160
MS.gene067790.t1 AT4G29360 26.623 462 293 15 26 452 37 487 5.04e-44 162
MS.gene067790.t1 AT1G11820 30.030 333 214 10 26 348 44 367 4.28e-42 154
MS.gene067790.t1 AT3G61810 29.167 336 206 12 26 347 55 372 1.97e-40 149
MS.gene067790.t1 AT2G27500 29.674 337 216 11 24 350 27 352 3.75e-40 149
MS.gene067790.t1 AT2G27500 29.674 337 216 11 24 350 27 352 6.89e-40 148
MS.gene067790.t1 AT4G34480 32.665 349 207 15 115 450 3 336 3.50e-39 146
MS.gene067790.t1 AT3G46570 30.409 342 214 15 11 342 13 340 1.73e-37 141
MS.gene067790.t1 AT1G77780 29.412 323 208 9 27 344 25 332 2.09e-34 132
MS.gene067790.t1 AT2G26600 30.714 280 171 11 96 363 11 279 2.24e-34 130
MS.gene067790.t1 AT5G24318 29.641 334 196 15 138 450 1 316 7.19e-34 130
MS.gene067790.t1 AT5G20390 28.529 333 216 11 19 344 26 343 1.73e-32 127
MS.gene067790.t1 AT1G77790 28.818 347 221 13 7 342 8 339 1.56e-31 124
MS.gene067790.t1 AT5G20330 27.273 341 216 11 11 334 8 333 1.68e-30 121
MS.gene067790.t1 AT5G20340 27.640 322 212 10 19 334 36 342 3.12e-30 121
MS.gene067790.t1 AT3G55780 26.000 350 229 12 26 357 31 368 5.43e-30 120
MS.gene067790.t1 AT1G33220 28.247 308 203 9 19 320 27 322 1.03e-29 119
MS.gene067790.t1 AT2G27500 29.474 285 180 11 76 350 1 274 1.62e-29 118
MS.gene067790.t1 AT5G20560 27.302 315 209 10 26 334 34 334 5.24e-28 114

Find 115 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAAAGACGTTGGTATAT+TGG 0.201622 7.1:+19639602 None:intergenic
ATTATAAACGTGCTCAATAT+TGG 0.203608 7.1:-19641406 MS.gene067790:CDS
AACATCTTCACAACAGTTTC+TGG 0.211606 7.1:+19641554 None:intergenic
TGGATTCCATTGTCAGTTAT+TGG 0.212683 7.1:+19639622 None:intergenic
TTTCGGCGACACACCAATTT+TGG 0.214002 7.1:-19639539 MS.gene067790:CDS
ATTTCAGCAAGTTGATTATT+AGG 0.225555 7.1:+19641434 None:intergenic
GTTGTTGATGTTAGGATTAT+TGG 0.250047 7.1:-19641645 MS.gene067790:CDS
CCTACTTCTCCTACCAAAAT+TGG 0.262834 7.1:+19639526 None:intergenic
TGGAAGGGCTTGGTGTGAAC+TGG 0.270727 7.1:-19641604 MS.gene067790:CDS
TAAAGGTACTGTTGCCTTTA+CGG 0.281687 7.1:+19639852 None:intergenic
TGCAACAACCTTGATGCTAA+TGG 0.283164 7.1:-19639103 MS.gene067790:CDS
AAGTTTCCGATGGATCTTTC+GGG 0.294935 7.1:-19639289 MS.gene067790:CDS
GCTCTCAAATCGATCGGTTT+CGG 0.295941 7.1:-19639556 MS.gene067790:CDS
ATTAACTTTGCTTGCACCTT+TGG 0.307246 7.1:-19639157 MS.gene067790:CDS
TTCATCGAAGTTTATCTGTT+TGG 0.307651 7.1:-19639394 MS.gene067790:CDS
TCTTATTGCATTGCCGGAAT+TGG 0.311120 7.1:+19639477 None:intergenic
GTAGAATCTTATTGCATTGC+CGG 0.319258 7.1:+19639471 None:intergenic
GGGTAAATGTTGACAGTAAA+TGG 0.333092 7.1:+19639712 None:intergenic
TTCCATCTGCGGGAATATTT+CGG 0.334659 7.1:-19639792 MS.gene067790:CDS
TTTACAATGTTGTTGATGTT+AGG 0.335818 7.1:-19641653 MS.gene067790:CDS
CAGATAAACTTCGATGAATC+CGG 0.350042 7.1:+19639399 None:intergenic
TTATAAACGTGCTCAATATT+GGG 0.352564 7.1:-19641405 MS.gene067790:CDS
GTGAAGATGTTGAAGGATAA+TGG 0.352574 7.1:-19641542 MS.gene067790:CDS
GTTACTCGTTATAACTTTGA+TGG 0.354819 7.1:-19641371 MS.gene067790:CDS
TGTTGTTATGTGGAAGGGCT+TGG 0.368756 7.1:-19641614 MS.gene067790:CDS
TTGTTGATGTTAGGATTATT+GGG 0.376590 7.1:-19641644 MS.gene067790:CDS
ATATAGACATCTGCGTTTAA+AGG 0.385672 7.1:+19639835 None:intergenic
GGTGACAAGAATGCCAATTC+CGG 0.398140 7.1:-19639490 MS.gene067790:CDS
GAAGTTTCCGATGGATCTTT+CGG 0.401121 7.1:-19639290 MS.gene067790:CDS
TTGCTGAGATCTTTAGCATC+AGG 0.401772 7.1:+19639193 None:intergenic
TCGAAGAAGGCGAAGTTGAA+TGG 0.408365 7.1:+19639658 None:intergenic
AGTCATGAGACCATTGATAT+CGG 0.412963 7.1:+19639768 None:intergenic
TCAACTTCGCCTTCTTCGAC+GGG 0.422981 7.1:-19639654 MS.gene067790:CDS
TGAAGATGTTGAAGGATAAT+GGG 0.423140 7.1:-19641541 MS.gene067790:CDS
CGATGAATCCGGGGCGGAGA+GGG 0.424811 7.1:+19639410 None:intergenic
TTCAACTTCGCCTTCTTCGA+CGG 0.430662 7.1:-19639655 MS.gene067790:CDS
GACGATCCTGATTCTGCGTC+TGG 0.432976 7.1:+19639050 None:intergenic
GTACTACCAGACGCAGAATC+AGG 0.436349 7.1:-19639056 MS.gene067790:CDS
ACCAAGACCAGCTTCATTGA+TGG 0.441196 7.1:+19639879 None:intergenic
TTTATCTACCCCGTCGAAGA+AGG 0.451188 7.1:+19639645 None:intergenic
TCCGCAGATATGTAGCGGTT+GGG 0.453302 7.1:-19639978 MS.gene067790:intron
TACCCCTTCTTAAGTCTCTA+CGG 0.454310 7.1:-19639694 MS.gene067790:CDS
ATGCTGAAGAAGGAACTATC+TGG 0.458076 7.1:+19638954 None:intergenic
TGATACTACAATGACTGCTT+TGG 0.463045 7.1:-19641489 MS.gene067790:CDS
CTTCAAAACAAACTTCTAGT+AGG 0.464131 7.1:-19639262 MS.gene067790:CDS
GCATTCTTGTCACCTTCTGT+TGG 0.465889 7.1:+19639499 None:intergenic
GGAAGGGCTTGGTGTGAACT+GGG 0.467914 7.1:-19641603 MS.gene067790:CDS
AAGCATTTCCATTAGCATCA+AGG 0.472386 7.1:+19639095 None:intergenic
CGAAGAAGGCGAAGTTGAAT+GGG 0.474909 7.1:+19639659 None:intergenic
TTCCGCAGATATGTAGCGGT+TGG 0.484860 7.1:-19639979 MS.gene067790:intron
ACCCCTTCTTAAGTCTCTAC+GGG 0.484918 7.1:-19639693 MS.gene067790:CDS
CAGTGTCTCTCAAAGTTACC+TGG 0.486453 7.1:+19639340 None:intergenic
GATTGTACTGCACTTGGGTA+TGG 0.490793 7.1:-19639133 MS.gene067790:CDS
TGATGCAAATTTCGATACAT+TGG 0.491804 7.1:-19639584 MS.gene067790:CDS
AAACAACAAAGCAGCAAATG+AGG 0.493412 7.1:+19638919 None:intergenic
TGGGGAATATTTCGATATGA+TGG 0.495745 7.1:-19639319 MS.gene067790:CDS
TGTTCGCAGCGAGTCTAGAA+AGG 0.496041 7.1:+19639440 None:intergenic
GCCATCAATGAAGCTGGTCT+TGG 0.496624 7.1:-19639880 MS.gene067790:CDS
AACGTGCTCAATATTGGGTT+AGG 0.498245 7.1:-19641400 MS.gene067790:CDS
GTTGAAATGTTGTCTGTAGT+AGG 0.500081 7.1:+19638998 None:intergenic
ATGACTGCTTTGGCTGGTAG+TGG 0.501400 7.1:-19641479 MS.gene067790:CDS
TGGTAGTGGAATTGAAGTTA+TGG 0.502034 7.1:-19641465 MS.gene067790:CDS
TTTGGAGATTGTACTGCACT+TGG 0.515034 7.1:-19639139 MS.gene067790:CDS
GTCATGAGACCATTGATATC+GGG 0.521177 7.1:+19639769 None:intergenic
GTTTCTGCTCTCAAATCGAT+CGG 0.522943 7.1:-19639562 MS.gene067790:CDS
CAAAATGCCATCAATGAAGC+TGG 0.527897 7.1:-19639886 MS.gene067790:CDS
GGCCGAAATATTCCCGCAGA+TGG 0.529991 7.1:+19639790 None:intergenic
ATCAAAGAAGATGCTGAAGA+AGG 0.530104 7.1:+19638944 None:intergenic
AGATAAACTTCGATGAATCC+GGG 0.532252 7.1:+19639400 None:intergenic
TGCTGAGATCTTTAGCATCA+GGG 0.538134 7.1:+19639194 None:intergenic
CAAACTTCTAGTAGGTGCAC+AGG 0.538210 7.1:-19639254 MS.gene067790:CDS
GACAATCAAGTTCCATCTGC+GGG 0.539631 7.1:-19639802 MS.gene067790:CDS
CAGGTAACTTTGAGAGACAC+TGG 0.539845 7.1:-19639339 MS.gene067790:CDS
GATGAATCCGGGGCGGAGAG+GGG 0.546532 7.1:+19639411 None:intergenic
GACGCGAAGAGCATTGCTCC+AGG 0.552654 7.1:-19639358 MS.gene067790:CDS
ACTACAATGACTGCTTTGGC+TGG 0.558501 7.1:-19641485 MS.gene067790:CDS
ATATTTCGGCCCGATATCAA+TGG 0.563489 7.1:-19639778 MS.gene067790:CDS
TCGATGAATCCGGGGCGGAG+AGG 0.565244 7.1:+19639409 None:intergenic
TGGTCTTGGTGACTCCGTAA+AGG 0.565881 7.1:-19639866 MS.gene067790:CDS
TTGGAGATTGTACTGCACTT+GGG 0.571116 7.1:-19639138 MS.gene067790:CDS
AACTGTTGTGAAGATGTTGA+AGG 0.573217 7.1:-19641549 MS.gene067790:CDS
GATAAACCAATAACTGACAA+TGG 0.575139 7.1:-19639628 MS.gene067790:CDS
TCTAGACTCGCTGCGAACAA+AGG 0.575607 7.1:-19639436 MS.gene067790:CDS
AAAGGAACCCCTCTCCGCCC+CGG 0.576993 7.1:-19639418 MS.gene067790:CDS
GAAAGATCCATCGGAAACTT+CGG 0.579080 7.1:+19639292 None:intergenic
GAAGTAGGATGGCCAACAGA+AGG 0.581640 7.1:-19639511 MS.gene067790:CDS
AATGTTCTGCAGTGCAGGAA+AGG 0.584113 7.1:+19639909 None:intergenic
CAATGGTCTCATGACTCAGA+TGG 0.589085 7.1:-19639761 MS.gene067790:CDS
GAAATTTGCATCAAAGACGT+TGG 0.589177 7.1:+19639594 None:intergenic
AGGTAACTTTGAGAGACACT+GGG 0.591795 7.1:-19639338 MS.gene067790:CDS
GTTCCCGTAGAGACTTAAGA+AGG 0.603438 7.1:+19639690 None:intergenic
AACAACAAAGCAGCAAATGA+GGG 0.604408 7.1:+19638920 None:intergenic
GAAGGGCTTGGTGTGAACTG+GGG 0.611743 7.1:-19641602 MS.gene067790:CDS
ACTCGTTATAACTTTGATGG+CGG 0.617236 7.1:-19641368 MS.gene067790:CDS
GGGTTAAACATGCACCACAT+TGG 0.618943 7.1:+19639214 None:intergenic
TGGATGATAAAATTGCAAGT+AGG 0.623501 7.1:+19638974 None:intergenic
TTCCCGTAGAGACTTAAGAA+GGG 0.632332 7.1:+19639691 None:intergenic
GTACAATTTCTCAACAAGAA+CGG 0.637978 7.1:-19639739 MS.gene067790:CDS
ATCTTCACAACAGTTTCTGG+TGG 0.639053 7.1:+19641557 None:intergenic
AGTTGACCCGAAAGATCCAT+CGG 0.649595 7.1:+19639283 None:intergenic
TCCCGTAGAGACTTAAGAAG+GGG 0.652260 7.1:+19639692 None:intergenic
AAGTGCAGTACAATCTCCAA+AGG 0.655496 7.1:+19639141 None:intergenic
TGGACAACCGAAGTTTCCGA+TGG 0.662375 7.1:-19639299 MS.gene067790:CDS
AAACTTCTAGTAGGTGCACA+GGG 0.662815 7.1:-19639253 MS.gene067790:CDS
GATGGAACTTGATTGTCCGA+CGG 0.668391 7.1:+19639808 None:intergenic
GGACAATCAAGTTCCATCTG+CGG 0.680371 7.1:-19639803 MS.gene067790:CDS
TCTGTTTGGACTCATCGATG+AGG 0.680701 7.1:-19639380 MS.gene067790:CDS
TCGCAGCGAGTCTAGAAAGG+AGG 0.683390 7.1:+19639443 None:intergenic
GATAAACTTCGATGAATCCG+GGG 0.689389 7.1:+19639401 None:intergenic
AATGCAATAAGATTCTACAA+TGG 0.690889 7.1:-19639466 MS.gene067790:CDS
TGAAATATCTTGATCCAATG+TGG 0.694528 7.1:-19639228 MS.gene067790:CDS
CAACTTCGCCTTCTTCGACG+GGG 0.696178 7.1:-19639653 MS.gene067790:CDS
AGATGTCTATATGTCTCCGT+CGG 0.709419 7.1:-19639824 MS.gene067790:CDS
AAACTTCGATGAATCCGGGG+CGG 0.742113 7.1:+19639404 None:intergenic
GGTAACTTTGAGAGACACTG+GGG 0.786507 7.1:-19639337 MS.gene067790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTATTTTTGTCA+GGG - chr7.1:19639531-19639550 MS.gene067790:CDS 10.0%
!!! TTTTTATTTTTATTTTTGTC+AGG - chr7.1:19639530-19639549 MS.gene067790:CDS 10.0%
!! AATAAAAGAATCTAATTCTG+AGG + chr7.1:19639741-19639760 None:intergenic 20.0%
!! AATCATTATTATGAACACAA+AGG + chr7.1:19639589-19639608 None:intergenic 20.0%
!! ATAAAAGAATCTAATTCTGA+GGG + chr7.1:19639740-19639759 None:intergenic 20.0%
!! ATCATTATTATGAACACAAA+GGG + chr7.1:19639588-19639607 None:intergenic 20.0%
!! TTATTGTAAGCTTTCAAAAA+TGG + chr7.1:19640614-19640633 None:intergenic 20.0%
!!! ATGTGCATATATCATATTTT+TGG - chr7.1:19639905-19639924 MS.gene067790:CDS 20.0%
!!! CAAACTTGTAAATCATTTTA+GGG - chr7.1:19640346-19640365 MS.gene067790:intron 20.0%
!!! TATTTTTCACAATCAGAAAT+TGG + chr7.1:19640116-19640135 None:intergenic 20.0%
!!! TTAGATTCTTTTATTAGTGT+TGG - chr7.1:19639746-19639765 MS.gene067790:CDS 20.0%
! AATGCAATAAGATTCTACAA+TGG - chr7.1:19641094-19641113 MS.gene067790:intron 25.0%
! AGAACAAATACATTATACCT+CGG + chr7.1:19639808-19639827 None:intergenic 25.0%
! ATTATAAACGTGCTCAATAT+TGG - chr7.1:19639154-19639173 MS.gene067790:CDS 25.0%
! GCACAAATTCACATTAAAAT+CGG + chr7.1:19640546-19640565 None:intergenic 25.0%
! TAAAATTTGTGATGCATTCT+TGG - chr7.1:19640039-19640058 MS.gene067790:intron 25.0%
! TTATAAACGTGCTCAATATT+GGG - chr7.1:19639155-19639174 MS.gene067790:CDS 25.0%
! TTGTTGATGTTAGGATTATT+GGG - chr7.1:19638916-19638935 MS.gene067790:CDS 25.0%
! TTTACAATGTTGTTGATGTT+AGG - chr7.1:19638907-19638926 MS.gene067790:CDS 25.0%
!! GCAAACTTGTAAATCATTTT+AGG - chr7.1:19640345-19640364 MS.gene067790:intron 25.0%
!! GGATTTATTGAACATTTTGA+AGG - chr7.1:19640208-19640227 MS.gene067790:intron 25.0%
!! TCTTTTCATGATTTCATCAA+TGG - chr7.1:19640088-19640107 MS.gene067790:intron 25.0%
!!! AGTTGTTCTTGTTTTAATCA+AGG - chr7.1:19639692-19639711 MS.gene067790:CDS 25.0%
!!! ATTTCAGCAAGTTGATTATT+AGG + chr7.1:19639129-19639148 None:intergenic 25.0%
!!! GCATATATCATATTTTTGGA+AGG - chr7.1:19639909-19639928 MS.gene067790:CDS 25.0%
!!! TGATTATGCATTTTGATTGA+TGG - chr7.1:19639610-19639629 MS.gene067790:CDS 25.0%
!!! TTTGTTAGACTTTTGATTCA+TGG - chr7.1:19639496-19639515 MS.gene067790:CDS 25.0%
!!! TTTTTGGAAGGAAATGTTTT+TGG - chr7.1:19639921-19639940 MS.gene067790:CDS 25.0%
ATATAGACATCTGCGTTTAA+AGG + chr7.1:19640728-19640747 None:intergenic 30.0%
CATTAAAATCGGTCGAAATT+CGG + chr7.1:19640535-19640554 None:intergenic 30.0%
CTTCAAAACAAACTTCTAGT+AGG - chr7.1:19641298-19641317 MS.gene067790:intron 30.0%
GATAAACCAATAACTGACAA+TGG - chr7.1:19640932-19640951 MS.gene067790:intron 30.0%
GTACAATTTCTCAACAAGAA+CGG - chr7.1:19640821-19640840 MS.gene067790:intron 30.0%
GTTACTCGTTATAACTTTGA+TGG - chr7.1:19639189-19639208 MS.gene067790:CDS 30.0%
GTTGTTGATGTTAGGATTAT+TGG - chr7.1:19638915-19638934 MS.gene067790:CDS 30.0%
TGAAATATCTTGATCCAATG+TGG - chr7.1:19641332-19641351 MS.gene067790:intron 30.0%
TGAAGATGTTGAAGGATAAT+GGG - chr7.1:19639019-19639038 MS.gene067790:CDS 30.0%
TGATATATGCACATACAAAC+AGG + chr7.1:19639899-19639918 None:intergenic 30.0%
TGATGCAAATTTCGATACAT+TGG - chr7.1:19640976-19640995 MS.gene067790:intron 30.0%
TGATTGAGAGTTCATATAAC+AGG - chr7.1:19639983-19640002 MS.gene067790:intron 30.0%
TGGATGATAAAATTGCAAGT+AGG + chr7.1:19641589-19641608 None:intergenic 30.0%
TTCATCGAAGTTTATCTGTT+TGG - chr7.1:19641166-19641185 MS.gene067790:intron 30.0%
TTGACAACACTAGGTTTAAT+GGG - chr7.1:19640187-19640206 MS.gene067790:intron 30.0%
TTTGACAACACTAGGTTTAA+TGG - chr7.1:19640186-19640205 MS.gene067790:intron 30.0%
! AATCATTTTACCATTCTAGG+AGG - chr7.1:19639831-19639850 MS.gene067790:CDS 30.0%
! ATCAAGGAAGCTTTATGTAT+TGG - chr7.1:19639708-19639727 MS.gene067790:CDS 30.0%
! GAGAATCATTTTACCATTCT+AGG - chr7.1:19639828-19639847 MS.gene067790:CDS 30.0%
! TAGGGAATAATTTGTAATGC+TGG - chr7.1:19640364-19640383 MS.gene067790:intron 30.0%
! TCAAGGAAGCTTTATGTATT+GGG - chr7.1:19639709-19639728 MS.gene067790:CDS 30.0%
!! TAGACTTTTGATTCATGGTT+AGG - chr7.1:19639501-19639520 MS.gene067790:CDS 30.0%
!!! AATTTTTCGAGATTCTGTGT+TGG - chr7.1:19639334-19639353 MS.gene067790:CDS 30.0%
!!! GTTTTTGTTGTTATGTGGAA+GGG - chr7.1:19638941-19638960 MS.gene067790:CDS 30.0%
!!! TGCTTTTTCTGTGATTCTAT+TGG - chr7.1:19641666-19641685 MS.gene067790:CDS 30.0%
!!! TGTTTTTGTTGTTATGTGGA+AGG - chr7.1:19638940-19638959 MS.gene067790:CDS 30.0%
!!! TTTGATTGATGGTGAGTTTT+GGG - chr7.1:19639621-19639640 MS.gene067790:CDS 30.0%
!!! TTTTGATTGATGGTGAGTTT+TGG - chr7.1:19639620-19639639 MS.gene067790:CDS 30.0%
AAACAACAAAGCAGCAAATG+AGG + chr7.1:19641644-19641663 None:intergenic 35.0%
AACAACAAAGCAGCAAATGA+GGG + chr7.1:19641643-19641662 None:intergenic 35.0%
AACATCTTCACAACAGTTTC+TGG + chr7.1:19639009-19639028 None:intergenic 35.0%
AACTGTTGTGAAGATGTTGA+AGG - chr7.1:19639011-19639030 MS.gene067790:CDS 35.0%
AAGCATTTCCATTAGCATCA+AGG + chr7.1:19641468-19641487 None:intergenic 35.0%
ACATCAATGCCATCTTTAGT+AGG - chr7.1:19640467-19640486 MS.gene067790:intron 35.0%
ACTCGTTATAACTTTGATGG+CGG - chr7.1:19639192-19639211 MS.gene067790:CDS 35.0%
AGATAAACTTCGATGAATCC+GGG + chr7.1:19641163-19641182 None:intergenic 35.0%
AGTCATGAGACCATTGATAT+CGG + chr7.1:19640795-19640814 None:intergenic 35.0%
ATCAAAGAAGATGCTGAAGA+AGG + chr7.1:19641619-19641638 None:intergenic 35.0%
ATTAACTTTGCTTGCACCTT+TGG - chr7.1:19641403-19641422 MS.gene067790:CDS 35.0%
CACAGAAAAAAGTTGCTACA+AGG + chr7.1:19639785-19639804 None:intergenic 35.0%
CAGATAAACTTCGATGAATC+CGG + chr7.1:19641164-19641183 None:intergenic 35.0%
CATCAAAGACGTTGGTATAT+TGG + chr7.1:19640961-19640980 None:intergenic 35.0%
CTAATGCTTCCTACTAAAGA+TGG + chr7.1:19640479-19640498 None:intergenic 35.0%
GAAATTTGCATCAAAGACGT+TGG + chr7.1:19640969-19640988 None:intergenic 35.0%
GGGTAAATGTTGACAGTAAA+TGG + chr7.1:19640851-19640870 None:intergenic 35.0%
GTAGAATCTTATTGCATTGC+CGG + chr7.1:19641092-19641111 None:intergenic 35.0%
GTATAATGTGCTTGCTTCAT+TGG - chr7.1:19639379-19639398 MS.gene067790:CDS 35.0%
GTGAAGATGTTGAAGGATAA+TGG - chr7.1:19639018-19639037 MS.gene067790:CDS 35.0%
GTTCATCAAAGCTTAAGATG+TGG + chr7.1:19640259-19640278 None:intergenic 35.0%
GTTGAAATGTTGTCTGTAGT+AGG + chr7.1:19641565-19641584 None:intergenic 35.0%
TGAAGCAAGCACATTATACA+AGG + chr7.1:19639378-19639397 None:intergenic 35.0%
TGATACTACAATGACTGCTT+TGG - chr7.1:19639071-19639090 MS.gene067790:CDS 35.0%
TGGATTCCATTGTCAGTTAT+TGG + chr7.1:19640941-19640960 None:intergenic 35.0%
TGGGGAATATTTCGATATGA+TGG - chr7.1:19641241-19641260 MS.gene067790:intron 35.0%
! CAGGAAATTTTGCATCAAGA+AGG - chr7.1:19640002-19640021 MS.gene067790:intron 35.0%
! GCTCGTAGAGATTTTATTGA+TGG - chr7.1:19640063-19640082 MS.gene067790:intron 35.0%
!! AAAGATGGCATTGATGTGTT+TGG + chr7.1:19640464-19640483 None:intergenic 35.0%
!! AAGATGGCATTGATGTGTTT+GGG + chr7.1:19640463-19640482 None:intergenic 35.0%
!! TAAAGGTACTGTTGCCTTTA+CGG + chr7.1:19640711-19640730 None:intergenic 35.0%
!! TGGTAGTGGAATTGAAGTTA+TGG - chr7.1:19639095-19639114 MS.gene067790:CDS 35.0%
!!! CGTTGTTTTTGTCATTGGAT+TGG - chr7.1:19640405-19640424 MS.gene067790:intron 35.0%
!!! GGGTTGTTTTTGTTGTTATG+TGG - chr7.1:19638936-19638955 MS.gene067790:CDS 35.0%
AAACTTCTAGTAGGTGCACA+GGG - chr7.1:19641307-19641326 MS.gene067790:intron 40.0%
AACGTGCTCAATATTGGGTT+AGG - chr7.1:19639160-19639179 MS.gene067790:CDS 40.0%
AAGTGCAGTACAATCTCCAA+AGG + chr7.1:19641422-19641441 None:intergenic 40.0%
AAGTTTCCGATGGATCTTTC+GGG - chr7.1:19641271-19641290 MS.gene067790:intron 40.0%
AGATGTCTATATGTCTCCGT+CGG - chr7.1:19640736-19640755 MS.gene067790:intron 40.0%
ATATTTCGGCCCGATATCAA+TGG - chr7.1:19640782-19640801 MS.gene067790:intron 40.0%
ATGCACATACAAACAGGAGA+GGG + chr7.1:19639893-19639912 None:intergenic 40.0%
ATGCTGAAGAAGGAACTATC+TGG + chr7.1:19641609-19641628 None:intergenic 40.0%
CAAAATGCCATCAATGAAGC+TGG - chr7.1:19640674-19640693 MS.gene067790:intron 40.0%
CCTACTTCTCCTACCAAAAT+TGG + chr7.1:19641037-19641056 None:intergenic 40.0%
GAAAGATCCATCGGAAACTT+CGG + chr7.1:19641271-19641290 None:intergenic 40.0%
GAAGTTTCCGATGGATCTTT+CGG - chr7.1:19641270-19641289 MS.gene067790:intron 40.0%
GATAAACTTCGATGAATCCG+GGG + chr7.1:19641162-19641181 None:intergenic 40.0%
GTCATGAGACCATTGATATC+GGG + chr7.1:19640794-19640813 None:intergenic 40.0%
GTTTCTGCTCTCAAATCGAT+CGG - chr7.1:19640998-19641017 MS.gene067790:intron 40.0%
TACCCCTTCTTAAGTCTCTA+CGG - chr7.1:19640866-19640885 MS.gene067790:intron 40.0%
TATGCACATACAAACAGGAG+AGG + chr7.1:19639894-19639913 None:intergenic 40.0%
TCTTATTGCATTGCCGGAAT+TGG + chr7.1:19641086-19641105 None:intergenic 40.0%
TGCAACAACCTTGATGCTAA+TGG - chr7.1:19641457-19641476 MS.gene067790:CDS 40.0%
TGCTGAGATCTTTAGCATCA+GGG + chr7.1:19641369-19641388 None:intergenic 40.0%
TTCCATCTGCGGGAATATTT+CGG - chr7.1:19640768-19640787 MS.gene067790:intron 40.0%
TTCCCGTAGAGACTTAAGAA+GGG + chr7.1:19640872-19640891 None:intergenic 40.0%
TTGCTGAGATCTTTAGCATC+AGG + chr7.1:19641370-19641389 None:intergenic 40.0%
TTGGAGATTGTACTGCACTT+GGG - chr7.1:19641422-19641441 MS.gene067790:CDS 40.0%
TTGGTCAAACTCTCAAATGG+CGG - chr7.1:19640424-19640443 MS.gene067790:intron 40.0%
TTTGGAGATTGTACTGCACT+TGG - chr7.1:19641421-19641440 MS.gene067790:CDS 40.0%
! AGGTAACTTTGAGAGACACT+GGG - chr7.1:19641222-19641241 MS.gene067790:intron 40.0%
! ATCTTCACAACAGTTTCTGG+TGG + chr7.1:19639006-19639025 None:intergenic 40.0%
! CGTCAAGCATGCAATTTTGA+AGG - chr7.1:19641529-19641548 MS.gene067790:CDS 40.0%
! CTTTTTCCGCAGATATGTAG+CGG - chr7.1:19640577-19640596 MS.gene067790:intron 40.0%
! TTTTGAATGTTCTGCAGTGC+AGG + chr7.1:19640659-19640678 None:intergenic 40.0%
! TTTTGGTAGGAGAAGTAGGA+TGG - chr7.1:19641038-19641057 MS.gene067790:intron 40.0%
!! AGATGGCATTGATGTGTTTG+GGG + chr7.1:19640462-19640481 None:intergenic 40.0%
!! CCAATTTTGGTAGGAGAAGT+AGG - chr7.1:19641034-19641053 MS.gene067790:intron 40.0%
!! GGATTGGTCAAACTCTCAAA+TGG - chr7.1:19640421-19640440 MS.gene067790:intron 40.0%
!!! AGGAGGTGATTGCTGTTTTA+GGG - chr7.1:19639848-19639867 MS.gene067790:CDS 40.0%
!!! CTGTTTTAGGGGAAGAGAAA+TGG - chr7.1:19639860-19639879 MS.gene067790:CDS 40.0%
!!! GTGAGTTTTGGGATCAAAGA+AGG - chr7.1:19639632-19639651 MS.gene067790:CDS 40.0%
!!! TAGGAGGTGATTGCTGTTTT+AGG - chr7.1:19639847-19639866 MS.gene067790:CDS 40.0%
!!! TGGTTGCTTTTGACAACACT+AGG - chr7.1:19640178-19640197 MS.gene067790:intron 40.0%
!!! TGTCGCGTTGTTTTTGTCAT+TGG - chr7.1:19640400-19640419 MS.gene067790:intron 40.0%
AAATCGGTCGAAATTCGGCA+AGG + chr7.1:19640530-19640549 None:intergenic 45.0%
AATGTTCTGCAGTGCAGGAA+AGG + chr7.1:19640654-19640673 None:intergenic 45.0%
ACAGCAATCACCTCCTAGAA+TGG + chr7.1:19639844-19639863 None:intergenic 45.0%
ACCAAGACCAGCTTCATTGA+TGG + chr7.1:19640684-19640703 None:intergenic 45.0%
ACCCCTTCTTAAGTCTCTAC+GGG - chr7.1:19640867-19640886 MS.gene067790:intron 45.0%
ACGCAAGCGCGTTTGTATAT+GGG - chr7.1:19639946-19639965 MS.gene067790:CDS 45.0%
ACTACAATGACTGCTTTGGC+TGG - chr7.1:19639075-19639094 MS.gene067790:CDS 45.0%
AGTTGACCCGAAAGATCCAT+CGG + chr7.1:19641280-19641299 None:intergenic 45.0%
CAAACTTCTAGTAGGTGCAC+AGG - chr7.1:19641306-19641325 MS.gene067790:intron 45.0%
CAATGGTCTCATGACTCAGA+TGG - chr7.1:19640799-19640818 MS.gene067790:intron 45.0%
CAGTGTCTCTCAAAGTTACC+TGG + chr7.1:19641223-19641242 None:intergenic 45.0%
CGAAGAAGGCGAAGTTGAAT+GGG + chr7.1:19640904-19640923 None:intergenic 45.0%
GACAATCAAGTTCCATCTGC+GGG - chr7.1:19640758-19640777 MS.gene067790:intron 45.0%
GATGGAACTTGATTGTCCGA+CGG + chr7.1:19640755-19640774 None:intergenic 45.0%
GATTGTACTGCACTTGGGTA+TGG - chr7.1:19641427-19641446 MS.gene067790:CDS 45.0%
GCATTCTTGTCACCTTCTGT+TGG + chr7.1:19641064-19641083 None:intergenic 45.0%
GGACAATCAAGTTCCATCTG+CGG - chr7.1:19640757-19640776 MS.gene067790:intron 45.0%
GGGTTAAACATGCACCACAT+TGG + chr7.1:19641349-19641368 None:intergenic 45.0%
GGTGACAAGAATGCCAATTC+CGG - chr7.1:19641070-19641089 MS.gene067790:intron 45.0%
GTTCCCGTAGAGACTTAAGA+AGG + chr7.1:19640873-19640892 None:intergenic 45.0%
TCCCGTAGAGACTTAAGAAG+GGG + chr7.1:19640871-19640890 None:intergenic 45.0%
TCGAAGAAGGCGAAGTTGAA+TGG + chr7.1:19640905-19640924 None:intergenic 45.0%
TCTGTTTGGACTCATCGATG+AGG - chr7.1:19641180-19641199 MS.gene067790:intron 45.0%
TGTTGTTATGTGGAAGGGCT+TGG - chr7.1:19638946-19638965 MS.gene067790:CDS 45.0%
TTCAACTTCGCCTTCTTCGA+CGG - chr7.1:19640905-19640924 MS.gene067790:intron 45.0%
TTTATCTACCCCGTCGAAGA+AGG + chr7.1:19640918-19640937 None:intergenic 45.0%
! CAGGTAACTTTGAGAGACAC+TGG - chr7.1:19641221-19641240 MS.gene067790:intron 45.0%
! GCTCTCAAATCGATCGGTTT+CGG - chr7.1:19641004-19641023 MS.gene067790:intron 45.0%
! GGTAACTTTGAGAGACACTG+GGG - chr7.1:19641223-19641242 MS.gene067790:intron 45.0%
! TTTCGGCGACACACCAATTT+TGG - chr7.1:19641021-19641040 MS.gene067790:intron 45.0%
!!! AGCAACTTTTTTCTGTGCCG+AGG - chr7.1:19639788-19639807 MS.gene067790:CDS 45.0%
!!! GGAGGTGATTGCTGTTTTAG+GGG - chr7.1:19639849-19639868 MS.gene067790:CDS 45.0%
AAACTTCGATGAATCCGGGG+CGG + chr7.1:19641159-19641178 None:intergenic 50.0%
ATGACTGCTTTGGCTGGTAG+TGG - chr7.1:19639081-19639100 MS.gene067790:CDS 50.0%
CACGCAAGCGCGTTTGTATA+TGG - chr7.1:19639945-19639964 MS.gene067790:CDS 50.0%
GAAGTAGGATGGCCAACAGA+AGG - chr7.1:19641049-19641068 MS.gene067790:intron 50.0%
GTACTACCAGACGCAGAATC+AGG - chr7.1:19641504-19641523 MS.gene067790:CDS 50.0%
TCAACTTCGCCTTCTTCGAC+GGG - chr7.1:19640906-19640925 MS.gene067790:intron 50.0%
TCCCAACCGCTACATATCTG+CGG + chr7.1:19640586-19640605 None:intergenic 50.0%
TCCGCAGATATGTAGCGGTT+GGG - chr7.1:19640582-19640601 MS.gene067790:intron 50.0%
TCTAGACTCGCTGCGAACAA+AGG - chr7.1:19641124-19641143 MS.gene067790:intron 50.0%
TGGACAACCGAAGTTTCCGA+TGG - chr7.1:19641261-19641280 MS.gene067790:intron 50.0%
TGTTCGCAGCGAGTCTAGAA+AGG + chr7.1:19641123-19641142 None:intergenic 50.0%
TTCCGCAGATATGTAGCGGT+TGG - chr7.1:19640581-19640600 MS.gene067790:intron 50.0%
! GCCATCAATGAAGCTGGTCT+TGG - chr7.1:19640680-19640699 MS.gene067790:intron 50.0%
! TGGTCTTGGTGACTCCGTAA+AGG - chr7.1:19640694-19640713 MS.gene067790:intron 50.0%
!! GGCGACACACCAATTTTGGT+AGG - chr7.1:19641025-19641044 MS.gene067790:intron 50.0%
AGCGCAGCGCTACAACATAG+TGG + chr7.1:19640154-19640173 None:intergenic 55.0%
CAACTTCGCCTTCTTCGACG+GGG - chr7.1:19640907-19640926 MS.gene067790:intron 55.0%
GACGATCCTGATTCTGCGTC+TGG + chr7.1:19641513-19641532 None:intergenic 55.0%
GCGCAGCGCTACAACATAGT+GGG + chr7.1:19640153-19640172 None:intergenic 55.0%
GGCCGAAATATTCCCGCAGA+TGG + chr7.1:19640773-19640792 None:intergenic 55.0%
TCGCAGCGAGTCTAGAAAGG+AGG + chr7.1:19641120-19641139 None:intergenic 55.0%
!! GAAGGGCTTGGTGTGAACTG+GGG - chr7.1:19638958-19638977 MS.gene067790:CDS 55.0%
!! GGAAGGGCTTGGTGTGAACT+GGG - chr7.1:19638957-19638976 MS.gene067790:CDS 55.0%
!! TGGAAGGGCTTGGTGTGAAC+TGG - chr7.1:19638956-19638975 MS.gene067790:CDS 55.0%
GTTGTAGCGCTGCGCTGCTA+TGG - chr7.1:19640158-19640177 MS.gene067790:intron 60.0%
!! GACGCGAAGAGCATTGCTCC+AGG - chr7.1:19641202-19641221 MS.gene067790:intron 60.0%
AAAGGAACCCCTCTCCGCCC+CGG - chr7.1:19641142-19641161 MS.gene067790:intron 65.0%
CGATGAATCCGGGGCGGAGA+GGG + chr7.1:19641153-19641172 None:intergenic 65.0%
GATGAATCCGGGGCGGAGAG+GGG + chr7.1:19641152-19641171 None:intergenic 65.0%
TCGATGAATCCGGGGCGGAG+AGG + chr7.1:19641154-19641173 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 19638889 19641693 19638889 ID=MS.gene067790
chr7.1 mRNA 19638889 19641693 19638889 ID=MS.gene067790.t1;Parent=MS.gene067790
chr7.1 exon 19641356 19641693 19641356 ID=MS.gene067790.t1.exon1;Parent=MS.gene067790.t1
chr7.1 CDS 19641356 19641693 19641356 ID=cds.MS.gene067790.t1;Parent=MS.gene067790.t1
chr7.1 exon 19638889 19639993 19638889 ID=MS.gene067790.t1.exon2;Parent=MS.gene067790.t1
chr7.1 CDS 19638889 19639993 19638889 ID=cds.MS.gene067790.t1;Parent=MS.gene067790.t1
Gene Sequence

>MS.gene067790

ATGGAAAAAAATTGGATTTTTACAATGTTGTTGATGTTAGGATTATTGGGTTGTTTTTGTTGTTATGTGGAAGGGCTTGGTGTGAACTGGGGTACACAAGCAACACACAAGTTACCACCAGAAACTGTTGTGAAGATGTTGAAGGATAATGGGATTCAAAAAGTTAAGCTTTTTGATGCAGATGATACTACAATGACTGCTTTGGCTGGTAGTGGAATTGAAGTTATGGTTGCTATTCCTAATAATCAACTTGCTGAAATGAATGATTATAAACGTGCTCAATATTGGGTTAGGAAGAATGTTACTCGTTATAACTTTGATGGCGGTGTTAAGATCAAGTGAGTTTTTTATTTTTATTTTTTATAATTAGTTAATTGATTTGATCTGTTGATGCTATTGATATTGATCTGCATTTGATGTTTAAGTGTTTGATTATTTGTATTGAAATTTTTCGAGATTCTGTGTTGGATTTTTATTACTTTTAATCCTTGTATAATGTGCTTGCTTCATTGGTTTAGTGTCAGTTAATTGATTTTGTTTTTTAATGTTATTATTGAGTATTGATCTGCATTTGATGTTTAAGTCATTGATTGTCTGTATTGATTTTTTTGTTAGACTTTTGATTCATGGTTAGGTCTATTTTTTTATTTTTATTTTTGTCAGGGTTTATTTTCATAAATGTTAAATTTTTTTAAGCCCTTTGTGTTCATAATAATGATTATGATTATGCATTTTGATTGATGGTGAGTTTTGGGATCAAAGAAGGAAAAGTGTGAAAAGAATTTTTCAAAAGTGAGCTCTGAAGTTGTTCTTGTTTTAATCAAGGAAGCTTTATGTATTGGGTGATTCCCTCAGAATTAGATTCTTTTATTAGTGTTGGTGCTTGATTGATTCCTTGTAGCAACTTTTTTCTGTGCCGAGGTATAATGTATTTGTTCTGAGAATCATTTTACCATTCTAGGAGGTGATTGCTGTTTTAGGGGAAGAGAAATGGTATCAGACCCTCTCCTGTTTGTATGTGCATATATCATATTTTTGGAAGGAAATGTTTTTGGTCACGCAAGCGCGTTTGTATATGGGAAAAAATAAGTAATTGATTGAGAGTTCATATAACAGGAAATTTTGCATCAAGAAGGAATAACAATACAATTAAAATTTGTGATGCATTCTTGGTGCTCGTAGAGATTTTATTGATGGTGTCTTTTCATGATTTCATCAATGGTTCCAATTTCTGATTGTGAAAAATAGCAGCTTATTCAATCCCACTATGTTGTAGCGCTGCGCTGCTATGGTTGCTTTTGACAACACTAGGTTTAATGGGATTTATTGAACATTTTGAAGGAAAAGCTGCTTCTTATTATTAAACACCACATCTTAAGCTTTGATGAACAGATACTGAATATTGATTGTTTCAATTTCTCTTTAAATGCTAATTTTGTTAAGTGTTAATTCTTAAGCAAACTTGTAAATCATTTTAGGGAATAATTTGTAATGCTGGTTGCGATGTTTATTGTCGCGTTGTTTTTGTCATTGGATTGGTCAAACTCTCAAATGGCGGTATTGTAGTGCTCCCCAAACACATCAATGCCATCTTTAGTAGGAAGCATTAGTACTATCAATGAAATGTATAGTTTCTTTCCTTGCCGAATTTCGACCGATTTTAATGTGAATTTGTGCATTTTGTCTATCTTTTTCCGCAGATATGTAGCGGTTGGGAATGAGCCATTTTTGAAAGCTTACAATAATTCATTCTTGAACATCACCTTTCCTGCACTGCAGAACATTCAAAATGCCATCAATGAAGCTGGTCTTGGTGACTCCGTAAAGGCAACAGTACCTTTAAACGCAGATGTCTATATGTCTCCGTCGGACAATCAAGTTCCATCTGCGGGAATATTTCGGCCCGATATCAATGGTCTCATGACTCAGATGGTACAATTTCTCAACAAGAACGGAGCACCATTTACTGTCAACATTTACCCCTTCTTAAGTCTCTACGGGAACGACGATTTCCCATTCAACTTCGCCTTCTTCGACGGGGTAGATAAACCAATAACTGACAATGGAATCCAATATACCAACGTCTTTGATGCAAATTTCGATACATTGGTTTCTGCTCTCAAATCGATCGGTTTCGGCGACACACCAATTTTGGTAGGAGAAGTAGGATGGCCAACAGAAGGTGACAAGAATGCCAATTCCGGCAATGCAATAAGATTCTACAATGGCCTCCTTTCTAGACTCGCTGCGAACAAAGGAACCCCTCTCCGCCCCGGATTCATCGAAGTTTATCTGTTTGGACTCATCGATGAGGACGCGAAGAGCATTGCTCCAGGTAACTTTGAGAGACACTGGGGAATATTTCGATATGATGGACAACCGAAGTTTCCGATGGATCTTTCGGGTCAACTTCAAAACAAACTTCTAGTAGGTGCACAGGGTGTGAAATATCTTGATCCAATGTGGTGCATGTTTAACCCTGATGCTAAAGATCTCAGCAAACTTGCTGATAACATTAACTTTGCTTGCACCTTTGGAGATTGTACTGCACTTGGGTATGGATCTTCTTGCAACAACCTTGATGCTAATGGAAATGCTTCTTATGCATTCAACATGTACTACCAGACGCAGAATCAGGATCGTCAAGCATGCAATTTTGAAGGTTTAGCTAAGCCTACTACAGACAACATTTCAACACCTACTTGCAATTTTATCATCCAGATAGTTCCTTCTTCAGCATCTTCTTTGATGCCCTCATTTGCTGCTTTGTTGTTTATTGCTTTTTCTGTGATTCTATTGGCTTAG
Protein sequence

>MS.gene067790.t1

MEKNWIFTMLLMLGLLGCFCCYVEGLGVNWGTQATHKLPPETVVKMLKDNGIQKVKLFDADDTTMTALAGSGIEVMVAIPNNQLAEMNDYKRAQYWVRKNVTRYNFDGGVKIKYVAVGNEPFLKAYNNSFLNITFPALQNIQNAINEAGLGDSVKATVPLNADVYMSPSDNQVPSAGIFRPDINGLMTQMVQFLNKNGAPFTVNIYPFLSLYGNDDFPFNFAFFDGVDKPITDNGIQYTNVFDANFDTLVSALKSIGFGDTPILVGEVGWPTEGDKNANSGNAIRFYNGLLSRLAANKGTPLRPGFIEVYLFGLIDEDAKSIAPGNFERHWGIFRYDGQPKFPMDLSGQLQNKLLVGAQGVKYLDPMWCMFNPDAKDLSKLADNINFACTFGDCTALGYGSSCNNLDANGNASYAFNMYYQTQNQDRQACNFEGLAKPTTDNISTPTCNFIIQIVPSSASSLMPSFAALLFIAFSVILLA