Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068019.t1 | XP_003610865.1 | 97 | 430 | 13 | 0 | 1 | 430 | 460 | 889 | 1.20E-208 | 735.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068019.t1 | Q931Q4 | 50.0 | 106 | 44 | 1 | 1 | 106 | 259 | 355 | 1.4e-24 | 115.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068019.t1 | G7K6I5 | 97.0 | 430 | 13 | 0 | 1 | 430 | 460 | 889 | 8.7e-209 | 735.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056979 | MS.gene068019 | 0.801872 | 7.34E-49 | -1.69E-46 |
MS.gene05886 | MS.gene068019 | 0.805264 | 1.45E-49 | -1.69E-46 |
MS.gene059285 | MS.gene068019 | 0.821827 | 3.28E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068019.t1 | MTR_5g007870 | 98.140 | 430 | 8 | 0 | 1 | 430 | 460 | 889 | 0.0 | 889 |
MS.gene068019.t1 | MTR_8g020880 | 45.946 | 111 | 51 | 1 | 3 | 113 | 453 | 554 | 2.59e-23 | 103 |
MS.gene068019.t1 | MTR_8g020880 | 45.946 | 111 | 51 | 1 | 3 | 113 | 453 | 554 | 4.00e-23 | 102 |
MS.gene068019.t1 | MTR_7g108940 | 36.364 | 110 | 64 | 2 | 3 | 106 | 388 | 497 | 3.77e-14 | 75.1 |
MS.gene068019.t1 | MTR_7g108940 | 36.364 | 110 | 64 | 2 | 3 | 106 | 388 | 497 | 4.49e-14 | 74.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068019.t1 | AT3G14050 | 46.491 | 114 | 52 | 2 | 1 | 114 | 439 | 543 | 1.42e-23 | 103 |
MS.gene068019.t1 | AT1G54130 | 46.226 | 106 | 48 | 1 | 1 | 106 | 443 | 539 | 1.71e-23 | 103 |
MS.gene068019.t1 | AT4G02260 | 42.593 | 108 | 56 | 2 | 1 | 102 | 389 | 496 | 6.70e-15 | 77.4 |
MS.gene068019.t1 | AT4G02260 | 43.137 | 102 | 52 | 2 | 7 | 102 | 394 | 495 | 2.36e-14 | 75.9 |
MS.gene068019.t1 | AT4G02260 | 43.137 | 102 | 52 | 2 | 7 | 102 | 394 | 495 | 2.49e-14 | 75.9 |
MS.gene068019.t1 | AT4G02260 | 43.137 | 102 | 52 | 2 | 7 | 102 | 394 | 495 | 2.77e-14 | 75.5 |
Find 90 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACGAGGATGCTTCTGTTTC+AGG | 0.107488 | 4.3:+20930807 | None:intergenic |
TAGGAGGATGCTTCTGTTTC+AGG | 0.113465 | 4.3:+20930765 | None:intergenic |
CCTTCGCAGCAAGACCAATT+TGG | 0.228450 | 4.3:-20929090 | MS.gene068019:intron |
GATGAGGATGCATCTGTTTC+AGG | 0.245100 | 4.3:+20930849 | None:intergenic |
AGCCACTAGGCTTCGGATTA+AGG | 0.247588 | 4.3:+20931230 | None:intergenic |
AGGTGTATCCATTCTGTCTA+TGG | 0.263485 | 4.3:+20930869 | None:intergenic |
AGGTGCATCCATTCTGTCTA+TGG | 0.274117 | 4.3:+20930827 | None:intergenic |
GGCCGCACATTGGCTTTATA+AGG | 0.314942 | 4.3:-20930913 | MS.gene068019:CDS |
AACTGGTTTGGAGGGAAAAC+TGG | 0.315287 | 4.3:-20928162 | MS.gene068019:CDS |
AGCAAGAAGAATCTGAATAT+TGG | 0.316961 | 4.3:-20929026 | MS.gene068019:CDS |
CTTCGCAGCAAGACCAATTT+GGG | 0.321635 | 4.3:-20929089 | MS.gene068019:intron |
TTATGCACGGCTATACAAAA+AGG | 0.347651 | 4.3:-20930425 | MS.gene068019:intron |
ATTCTGTCTATGGATGAAAA+AGG | 0.366978 | 4.3:+20930879 | None:intergenic |
CACCCAGTCCTTAGAGTAGA+AGG | 0.370880 | 4.3:-20930669 | MS.gene068019:CDS |
GGATGCTAGCATCAATAATA+AGG | 0.372137 | 4.3:-20928917 | MS.gene068019:intron |
AACCTCATTATTTCACCATT+AGG | 0.384002 | 4.3:+20928221 | None:intergenic |
CGTTGTATCTGCCGTGTTTG+AGG | 0.389181 | 4.3:-20929001 | MS.gene068019:CDS |
GCAAGAAGAATCTGAATATT+GGG | 0.390134 | 4.3:-20929025 | MS.gene068019:CDS |
GGTGACTTCCTTCTACTCTA+AGG | 0.425809 | 4.3:+20930661 | None:intergenic |
GTTCTTATTTGTACTTCTAA+AGG | 0.426218 | 4.3:+20931055 | None:intergenic |
TGCTGCACAAAGAACTGGTT+TGG | 0.428291 | 4.3:-20928174 | MS.gene068019:CDS |
GTTGATGCTGCACAAAGAAC+TGG | 0.434423 | 4.3:-20928179 | MS.gene068019:CDS |
ACTTGATAGCCACTAGGCTT+CGG | 0.436040 | 4.3:+20931223 | None:intergenic |
ACTTTGCGTCGTGCTTTGTT+TGG | 0.446738 | 4.3:+20928297 | None:intergenic |
ACCACTTCTCCAAGGTTAAG+AGG | 0.451401 | 4.3:+20928257 | None:intergenic |
AAGCTTCCCATCGCTTATCC+TGG | 0.456526 | 4.3:+20930446 | None:intergenic |
TCCTTGCACACTGCAGTTGA+AGG | 0.457978 | 4.3:-20931091 | MS.gene068019:CDS |
AAGCACGACGCAAAGTTTGA+TGG | 0.460137 | 4.3:-20928290 | MS.gene068019:CDS |
CCTGGACGAATGTTGGTAGA+AGG | 0.465788 | 4.3:+20929064 | None:intergenic |
ACTTCTAAAGGCGAGTTGTC+AGG | 0.469383 | 4.3:+20931067 | None:intergenic |
TACTTGCTGCTGTTATCATC+AGG | 0.469739 | 4.3:-20930638 | MS.gene068019:intron |
ATATTCAGATTCTTCTTGCT+CGG | 0.478819 | 4.3:+20929029 | None:intergenic |
TGCTTCAGGTGTCTGATGAA+TGG | 0.479306 | 4.3:-20929775 | MS.gene068019:intron |
GTTGTATCTGCCGTGTTTGA+GGG | 0.479854 | 4.3:-20929000 | MS.gene068019:CDS |
CTTCCTTCTACTCTAAGGAC+TGG | 0.480606 | 4.3:+20930666 | None:intergenic |
GAGCAAGAATAAGTCATTGA+AGG | 0.482206 | 4.3:-20930697 | MS.gene068019:CDS |
TTGGTAGAAGGCGCCCAAAT+TGG | 0.484321 | 4.3:+20929076 | None:intergenic |
TTGAACCAGGACATGGGGAT+TGG | 0.485459 | 4.3:-20929748 | MS.gene068019:CDS |
GTAGTTATATGTTGGCCTAA+TGG | 0.492948 | 4.3:-20928236 | MS.gene068019:CDS |
AGAACGCAATTGCTCTTCCC+AGG | 0.498208 | 4.3:+20928334 | None:intergenic |
TTTGAGAACAATGCTTTCCT+GGG | 0.499290 | 4.3:-20928351 | MS.gene068019:CDS |
CTATAGCAACACTGAACTGC+AGG | 0.501323 | 4.3:+20931706 | None:intergenic |
TTGATAACCTGGACGAATGT+TGG | 0.506535 | 4.3:+20929057 | None:intergenic |
CGTGCATTAAGAGTAGTTGT+AGG | 0.514332 | 4.3:-20931754 | MS.gene068019:CDS |
TGCACAAAGAACTGGTTTGG+AGG | 0.514576 | 4.3:-20928171 | MS.gene068019:CDS |
CTTGGTTCCGTCAACTTCTG+TGG | 0.522372 | 4.3:-20928938 | MS.gene068019:CDS |
AACATGGACTGGCCGCACAT+TGG | 0.527323 | 4.3:-20930923 | MS.gene068019:CDS |
AGACTTTGGACACCGATAGA+TGG | 0.529038 | 4.3:-20931271 | MS.gene068019:CDS |
CCTTCTACCAACATTCGTCC+AGG | 0.532976 | 4.3:-20929064 | MS.gene068019:CDS |
ACCTTCAACTGCAGTGTGCA+AGG | 0.533306 | 4.3:+20931090 | None:intergenic |
TCCTCTTAACCTTGGAGAAG+TGG | 0.533885 | 4.3:-20928258 | MS.gene068019:CDS |
GAGAAGTGGTAGTTATATGT+TGG | 0.534360 | 4.3:-20928244 | MS.gene068019:CDS |
CCTAATACAAAACTCAAAGA+TGG | 0.543073 | 4.3:-20928113 | MS.gene068019:CDS |
TGGTGGTTTGAACCAGGACA+TGG | 0.544727 | 4.3:-20929755 | MS.gene068019:CDS |
ATCGCAATCAAAATTAGACT+TGG | 0.551458 | 4.3:-20928956 | MS.gene068019:CDS |
ATCCTCATCCATAGACAGAA+TGG | 0.554296 | 4.3:-20930835 | MS.gene068019:CDS |
CCACGTGGTCCTCTTAACCT+TGG | 0.557933 | 4.3:-20928266 | MS.gene068019:CDS |
CTAGCATCCACAGAAGTTGA+CGG | 0.563692 | 4.3:+20928931 | None:intergenic |
AAGAATAAGTCATTGAAGGC+TGG | 0.566635 | 4.3:-20930693 | MS.gene068019:CDS |
ATCCATTCTGTCTATGGATG+AGG | 0.570002 | 4.3:+20930833 | None:intergenic |
ATCCTCGTCTATAGACAGAA+TGG | 0.578285 | 4.3:-20930793 | MS.gene068019:CDS |
GCACAAAGAACTGGTTTGGA+GGG | 0.579517 | 4.3:-20928170 | MS.gene068019:CDS |
TTCCTTCTACTCTAAGGACT+GGG | 0.583222 | 4.3:+20930667 | None:intergenic |
GTACACCAATCCCCATGTCC+TGG | 0.585989 | 4.3:+20929743 | None:intergenic |
GGTGGTTTGAACCAGGACAT+GGG | 0.589942 | 4.3:-20929754 | MS.gene068019:CDS |
TCATCAAATTCACCATCTAT+CGG | 0.592464 | 4.3:+20931259 | None:intergenic |
GCTCGGTAAAATTGATAACC+TGG | 0.594376 | 4.3:+20929046 | None:intergenic |
TTCAGGTGTCTGATGAATGG+TGG | 0.600539 | 4.3:-20929772 | MS.gene068019:intron |
GAAATAATGAGGTTGAAAGC+TGG | 0.602733 | 4.3:-20928212 | MS.gene068019:CDS |
CGTGTTTGAGGGCAAGCAAG+TGG | 0.603762 | 4.3:-20928989 | MS.gene068019:CDS |
GTGGTTTGAACCAGGACATG+GGG | 0.604494 | 4.3:-20929753 | MS.gene068019:CDS |
GATGAATGGTGGTTTGAACC+AGG | 0.608417 | 4.3:-20929761 | MS.gene068019:CDS |
CACTTGCTTGCCCTCAAACA+CGG | 0.612017 | 4.3:+20928990 | None:intergenic |
TGAGTATGCTGAACATGGAC+TGG | 0.614896 | 4.3:-20930934 | MS.gene068019:CDS |
ATGCATGAGTATGCTGAACA+TGG | 0.615116 | 4.3:-20930939 | MS.gene068019:CDS |
GGCCTAATGGTGAAATAATG+AGG | 0.617241 | 4.3:-20928223 | MS.gene068019:CDS |
AAATACACACTGTGTCGAGA+TGG | 0.617275 | 4.3:-20929710 | MS.gene068019:CDS |
ATCCTTAATCCGAAGCCTAG+TGG | 0.621389 | 4.3:-20931232 | MS.gene068019:CDS |
TGATGATAACAGCAGCAAGT+AGG | 0.630310 | 4.3:+20930640 | None:intergenic |
TTCCTTATAAAGCCAATGTG+CGG | 0.634617 | 4.3:+20930911 | None:intergenic |
ATATAACTACCACTTCTCCA+AGG | 0.638921 | 4.3:+20928249 | None:intergenic |
AGCGATGGGAAGCTTATGCA+CGG | 0.649071 | 4.3:-20930438 | MS.gene068019:CDS |
AGAAGTACAAATAAGAACAC+AGG | 0.657615 | 4.3:-20931050 | MS.gene068019:intron |
ATCCATTCTGTCTATAGACG+AGG | 0.664126 | 4.3:+20930791 | None:intergenic |
GTCTTCTTGACATTGTACAC+AGG | 0.665107 | 4.3:-20931684 | MS.gene068019:intron |
TCGAGATGGTATGTATCACA+AGG | 0.673604 | 4.3:-20929696 | MS.gene068019:intron |
AGCCTAACTTGATAGCCACT+AGG | 0.684297 | 4.3:+20931217 | None:intergenic |
GCAAAGTTTGATGGTCCACG+TGG | 0.717907 | 4.3:-20928281 | MS.gene068019:CDS |
TGTTGTGCAGATGAAACGAA+AGG | 0.726987 | 4.3:-20931806 | None:intergenic |
CCAAGGTTAAGAGGACCACG+TGG | 0.754888 | 4.3:+20928266 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAAAAAAAAAAAT+TGG | + | chr4.3:20928423-20928442 | None:intergenic | 0.0% |
!! | ATTACCAAAAATATAAATAA+TGG | + | chr4.3:20931292-20931311 | None:intergenic | 10.0% |
!!! | AATAAACGTTAAATATATTT+TGG | - | chr4.3:20930433-20930452 | MS.gene068019:CDS | 10.0% |
!! | AAAATATAAGAGTCAATATA+TGG | + | chr4.3:20928586-20928605 | None:intergenic | 15.0% |
!! | AAATATAAGAGTCAATATAT+GGG | + | chr4.3:20928585-20928604 | None:intergenic | 15.0% |
!! | AACAAAATATAAAGAAAAGA+TGG | + | chr4.3:20929902-20929921 | None:intergenic | 15.0% |
!! | ACTTAATTTACTTTATGTAT+TGG | - | chr4.3:20928317-20928336 | MS.gene068019:CDS | 15.0% |
!! | ATTATTATAAATGAAGTACA+TGG | - | chr4.3:20930614-20930633 | MS.gene068019:intron | 15.0% |
!! | TTGTATTATCTTGAAAAATT+AGG | + | chr4.3:20929707-20929726 | None:intergenic | 15.0% |
!!! | TTAACATTTTTAAAATCTAC+TGG | + | chr4.3:20931469-20931488 | None:intergenic | 15.0% |
!!! | TTATTTTTTCTTATTCTCTT+TGG | - | chr4.3:20930533-20930552 | MS.gene068019:CDS | 15.0% |
!!! | TTCTTTTTCTTAGATATAAA+CGG | - | chr4.3:20930718-20930737 | MS.gene068019:CDS | 15.0% |
!!! | TTTTTATTTTTTTCCTTGTT+TGG | - | chr4.3:20930316-20930335 | MS.gene068019:intron | 15.0% |
!! | AAATATTGCTGATCAAATTT+CGG | + | chr4.3:20931255-20931274 | None:intergenic | 20.0% |
!! | AAATCATTACAAGGAATTAA+GGG | + | chr4.3:20930508-20930527 | None:intergenic | 20.0% |
!! | AATATAAGAGTCAATATATG+GGG | + | chr4.3:20928584-20928603 | None:intergenic | 20.0% |
!! | AGAAACAAAAACAATGATAA+AGG | + | chr4.3:20930257-20930276 | None:intergenic | 20.0% |
!! | ATAAAAGTCAAATCATTACA+AGG | + | chr4.3:20930517-20930536 | None:intergenic | 20.0% |
!! | GAAACAAAAACAATGATAAA+GGG | + | chr4.3:20930256-20930275 | None:intergenic | 20.0% |
!! | GCTTAACTTAAAACATTTAT+TGG | - | chr4.3:20929488-20929507 | MS.gene068019:intron | 20.0% |
!! | TAACATAAATCCATTAGAAA+TGG | + | chr4.3:20929284-20929303 | None:intergenic | 20.0% |
!! | TGATTCTTATATCAATTGAT+TGG | + | chr4.3:20931089-20931108 | None:intergenic | 20.0% |
!!! | ATATTTTACTGTATAGACTT+TGG | - | chr4.3:20928599-20928618 | MS.gene068019:intron | 20.0% |
!!! | CAATACAATAATTTGTATGA+AGG | - | chr4.3:20928283-20928302 | MS.gene068019:CDS | 20.0% |
!!! | GCAACCATTATTTATATTTT+TGG | - | chr4.3:20931285-20931304 | MS.gene068019:intron | 20.0% |
!!! | TCTTTTTCTTAGATATAAAC+GGG | - | chr4.3:20930719-20930738 | MS.gene068019:CDS | 20.0% |
!!! | TTGATTGGTTAAAACTAAAA+TGG | + | chr4.3:20930011-20930030 | None:intergenic | 20.0% |
!!! | TTTTTCCTTTTCAGATATTT+TGG | - | chr4.3:20928458-20928477 | MS.gene068019:intron | 20.0% |
!!! | TTTTTTTTTGTTGGATTACA+TGG | - | chr4.3:20930643-20930662 | MS.gene068019:CDS | 20.0% |
! | AATATAAAGAAAAGATGGCA+CGG | + | chr4.3:20929897-20929916 | None:intergenic | 25.0% |
! | AATGATAAGCAAATTCCATT+TGG | + | chr4.3:20931030-20931049 | None:intergenic | 25.0% |
! | AATGTGTAAGAAACATAAGT+TGG | + | chr4.3:20931005-20931024 | None:intergenic | 25.0% |
! | ACTCTATATATTCATCTTCT+AGG | - | chr4.3:20931503-20931522 | MS.gene068019:intron | 25.0% |
! | AGAACTAGAATAAAGAAAGT+GGG | + | chr4.3:20930360-20930379 | None:intergenic | 25.0% |
! | ATTGGCAATTATATTTGACA+CGG | + | chr4.3:20931071-20931090 | None:intergenic | 25.0% |
! | CAAATCATTACAAGGAATTA+AGG | + | chr4.3:20930509-20930528 | None:intergenic | 25.0% |
! | TCAATTATGCATAGTGATAT+TGG | + | chr4.3:20931370-20931389 | None:intergenic | 25.0% |
! | TCTGAAAAGGAAAAAAAGAA+TGG | + | chr4.3:20928453-20928472 | None:intergenic | 25.0% |
! | TGCATAATTGACTAGAATTT+AGG | - | chr4.3:20931379-20931398 | MS.gene068019:intron | 25.0% |
!! | CTCTTTGGTTTATAGATTAA+TGG | - | chr4.3:20930548-20930567 | MS.gene068019:intron | 25.0% |
!! | GTTCTTATTTGTACTTCTAA+AGG | + | chr4.3:20928832-20928851 | None:intergenic | 25.0% |
!! | TTCATTTTCTACACTGAAAA+CGG | + | chr4.3:20929344-20929363 | None:intergenic | 25.0% |
!! | TTGGTAATTGATATGAATGT+AGG | - | chr4.3:20929507-20929526 | MS.gene068019:intron | 25.0% |
!!! | TGGACATTCTTTTTTTTTGT+TGG | - | chr4.3:20930634-20930653 | MS.gene068019:intron | 25.0% |
AACCTCATTATTTCACCATT+AGG | + | chr4.3:20931666-20931685 | None:intergenic | 30.0% | |
ACAGTCCAAAATATCTGAAA+AGG | + | chr4.3:20928466-20928485 | None:intergenic | 30.0% | |
ACTCATAGTTACTGATAAGT+GGG | - | chr4.3:20929628-20929647 | MS.gene068019:intron | 30.0% | |
AGCAAGAAGAATCTGAATAT+TGG | - | chr4.3:20930858-20930877 | MS.gene068019:CDS | 30.0% | |
ATATTCAGATTCTTCTTGCT+CGG | + | chr4.3:20930858-20930877 | None:intergenic | 30.0% | |
ATCGCAATCAAAATTAGACT+TGG | - | chr4.3:20930928-20930947 | MS.gene068019:CDS | 30.0% | |
ATTCTGTCTATGGATGAAAA+AGG | + | chr4.3:20929008-20929027 | None:intergenic | 30.0% | |
CAGAACTAGAATAAAGAAAG+TGG | + | chr4.3:20930361-20930380 | None:intergenic | 30.0% | |
CATTGTACACAGGTAAAATA+AGG | - | chr4.3:20928210-20928229 | MS.gene068019:CDS | 30.0% | |
CCTAATACAAAACTCAAAGA+TGG | - | chr4.3:20931771-20931790 | MS.gene068019:CDS | 30.0% | |
GACAAAAATGGAACTTTACA+TGG | - | chr4.3:20928154-20928173 | MS.gene068019:CDS | 30.0% | |
GAGAATAAAGATGATTCTCA+TGG | + | chr4.3:20931164-20931183 | None:intergenic | 30.0% | |
GCAAGAAGAATCTGAATATT+GGG | - | chr4.3:20930859-20930878 | MS.gene068019:CDS | 30.0% | |
TAAAGATGATTCTCATGGTT+CGG | + | chr4.3:20931159-20931178 | None:intergenic | 30.0% | |
TATGGATGAAAAAGGATTTC+TGG | + | chr4.3:20929000-20929019 | None:intergenic | 30.0% | |
TCATCAAATTCACCATCTAT+CGG | + | chr4.3:20928628-20928647 | None:intergenic | 30.0% | |
TCTTACACACTTTCTTTGAT+TGG | + | chr4.3:20930026-20930045 | None:intergenic | 30.0% | |
TGAGAAATTCTAGATCAAGT+AGG | - | chr4.3:20931229-20931248 | MS.gene068019:CDS | 30.0% | |
TGCAACATTTCCATTTCTAA+TGG | - | chr4.3:20929271-20929290 | MS.gene068019:intron | 30.0% | |
TGCAATTGTGATGTAGAAAT+CGG | - | chr4.3:20931339-20931358 | MS.gene068019:intron | 30.0% | |
TTAAAATCTACTGGAACACA+GGG | + | chr4.3:20931460-20931479 | None:intergenic | 30.0% | |
TTAATTCCATGCTATGTAAC+TGG | - | chr4.3:20931127-20931146 | MS.gene068019:intron | 30.0% | |
TTACTTAAAGTGTACCCTAT+TGG | - | chr4.3:20928558-20928577 | MS.gene068019:intron | 30.0% | |
TTATAACCAGTTACATAGCA+TGG | + | chr4.3:20931136-20931155 | None:intergenic | 30.0% | |
TTTCTTACACATTCTCCAAA+TGG | - | chr4.3:20931012-20931031 | MS.gene068019:intron | 30.0% | |
! | AGAAGTACAAATAAGAACAC+AGG | - | chr4.3:20928834-20928853 | MS.gene068019:intron | 30.0% |
! | TGATTGGTTAAAATCCACAT+GGG | - | chr4.3:20929963-20929982 | MS.gene068019:intron | 30.0% |
! | TTCTGTGTCTTTGGAAAAAT+AGG | + | chr4.3:20929141-20929160 | None:intergenic | 30.0% |
! | TTGATTGGTTAAAATCCACA+TGG | - | chr4.3:20929962-20929981 | MS.gene068019:intron | 30.0% |
! | TTTAAAATCTACTGGAACAC+AGG | + | chr4.3:20931461-20931480 | None:intergenic | 30.0% |
! | TTTTTCATCCATAGACAGAA+TGG | - | chr4.3:20929007-20929026 | MS.gene068019:CDS | 30.0% |
!! | CACTTTCTTTATTCTAGTTC+TGG | - | chr4.3:20930359-20930378 | MS.gene068019:intron | 30.0% |
!! | CCATCTTTGAGTTTTGTATT+AGG | + | chr4.3:20931774-20931793 | None:intergenic | 30.0% |
!! | TCTGGCTTTAGTTCTAATAA+TGG | - | chr4.3:20930377-20930396 | MS.gene068019:intron | 30.0% |
!! | TGATAGAAGATCATTTTTCC+AGG | - | chr4.3:20929420-20929439 | MS.gene068019:intron | 30.0% |
AAATTTATATGGGACCCATG+TGG | + | chr4.3:20929980-20929999 | None:intergenic | 35.0% | |
AACTATGAGTCATACTCAAC+AGG | + | chr4.3:20929618-20929637 | None:intergenic | 35.0% | |
AAGAATAAGTCATTGAAGGC+TGG | - | chr4.3:20929191-20929210 | MS.gene068019:intron | 35.0% | |
ACATGGGTCCCATATAAATT+TGG | - | chr4.3:20929979-20929998 | MS.gene068019:intron | 35.0% | |
ACTGAAAACGGTAACAAAGA+CGG | + | chr4.3:20929332-20929351 | None:intergenic | 35.0% | |
AGAATTTCTCAGTACGTGAA+TGG | + | chr4.3:20931220-20931239 | None:intergenic | 35.0% | |
ATATAACTACCACTTCTCCA+AGG | + | chr4.3:20931638-20931657 | None:intergenic | 35.0% | |
ATATAGAAGAAAGCCTTCTG+AGG | - | chr4.3:20928368-20928387 | MS.gene068019:intron | 35.0% | |
CAAATGTGCATATCCAAACA+AGG | + | chr4.3:20930332-20930351 | None:intergenic | 35.0% | |
CTCACTCTTGTCTCTTAAAT+TGG | - | chr4.3:20931181-20931200 | MS.gene068019:intron | 35.0% | |
GAAACAATGAAAACAACGTC+TGG | + | chr4.3:20929787-20929806 | None:intergenic | 35.0% | |
GAAATAATGAGGTTGAAAGC+TGG | - | chr4.3:20931672-20931691 | MS.gene068019:intron | 35.0% | |
GACTCATAGTTACTGATAAG+TGG | - | chr4.3:20929627-20929646 | MS.gene068019:intron | 35.0% | |
GAGAAGTGGTAGTTATATGT+TGG | - | chr4.3:20931640-20931659 | MS.gene068019:intron | 35.0% | |
GAGCAAGAATAAGTCATTGA+AGG | - | chr4.3:20929187-20929206 | MS.gene068019:intron | 35.0% | |
GAGGATAGGAAGAAAAAAGA+AGG | - | chr4.3:20928390-20928409 | MS.gene068019:intron | 35.0% | |
GGATCCCACCAAATTTATAT+GGG | + | chr4.3:20929990-20930009 | None:intergenic | 35.0% | |
GGATGCTAGCATCAATAATA+AGG | - | chr4.3:20930967-20930986 | MS.gene068019:intron | 35.0% | |
GTAGTTGTAGGAGACAAAAA+TGG | - | chr4.3:20928142-20928161 | MS.gene068019:CDS | 35.0% | |
TACATATGCATTTCCTCTCT+CGG | - | chr4.3:20929857-20929876 | MS.gene068019:intron | 35.0% | |
TATACTTAGAAGCCAGTAAC+TGG | - | chr4.3:20929565-20929584 | MS.gene068019:intron | 35.0% | |
TGCTTGTGATGTATGTTTGT+GGG | - | chr4.3:20929531-20929550 | MS.gene068019:intron | 35.0% | |
TGGATCCCACCAAATTTATA+TGG | + | chr4.3:20929991-20930010 | None:intergenic | 35.0% | |
TTATGCACGGCTATACAAAA+AGG | - | chr4.3:20929459-20929478 | MS.gene068019:intron | 35.0% | |
TTCCTTATAAAGCCAATGTG+CGG | + | chr4.3:20928976-20928995 | None:intergenic | 35.0% | |
TTTGAGAACAATGCTTTCCT+GGG | - | chr4.3:20931533-20931552 | MS.gene068019:intron | 35.0% | |
! | ATTTTCCTCTTCTGTGTCTT+TGG | + | chr4.3:20929150-20929169 | None:intergenic | 35.0% |
! | ATTTTTCCAGGATAAGCGAT+GGG | - | chr4.3:20929432-20929451 | MS.gene068019:intron | 35.0% |
! | GTAGTTATATGTTGGCCTAA+TGG | - | chr4.3:20931648-20931667 | MS.gene068019:intron | 35.0% |
! | TGTGTCTTTGGAAAAATAGG+AGG | + | chr4.3:20929138-20929157 | None:intergenic | 35.0% |
! | TTTTTCCAAAGACACAGAAG+AGG | - | chr4.3:20929142-20929161 | MS.gene068019:intron | 35.0% |
!! | TTTTGAGAACAATGCTTTCC+TGG | - | chr4.3:20931532-20931551 | MS.gene068019:intron | 35.0% |
!!! | GGAAAACTGGTTTTGATCAA+CGG | - | chr4.3:20931735-20931754 | MS.gene068019:CDS | 35.0% |
AAATACACACTGTGTCGAGA+TGG | - | chr4.3:20930174-20930193 | MS.gene068019:intron | 40.0% | |
ACAATCATCCATCCAGTTAC+TGG | + | chr4.3:20929580-20929599 | None:intergenic | 40.0% | |
ACACACACACACTCTTTGAT+TGG | - | chr4.3:20929947-20929966 | MS.gene068019:intron | 40.0% | |
AGAAATCTCTGCAACATGTG+AGG | + | chr4.3:20928872-20928891 | None:intergenic | 40.0% | |
AGGTGTATCCATTCTGTCTA+TGG | + | chr4.3:20929018-20929037 | None:intergenic | 40.0% | |
AGTCAATATATGGGGCCAAT+AGG | + | chr4.3:20928576-20928595 | None:intergenic | 40.0% | |
ATAGTTACTGATAAGTGGGC+AGG | - | chr4.3:20929632-20929651 | MS.gene068019:intron | 40.0% | |
ATCCATTCTGTCTATAGACG+AGG | + | chr4.3:20929096-20929115 | None:intergenic | 40.0% | |
ATCCATTCTGTCTATGGATG+AGG | + | chr4.3:20929012-20929031 | None:intergenic | 40.0% | |
ATCCTCATCCATAGACAGAA+TGG | - | chr4.3:20929049-20929068 | MS.gene068019:CDS | 40.0% | |
ATCCTCGTCTATAGACAGAA+TGG | - | chr4.3:20929091-20929110 | MS.gene068019:intron | 40.0% | |
ATGCATGAGTATGCTGAACA+TGG | - | chr4.3:20928945-20928964 | MS.gene068019:CDS | 40.0% | |
CGTGCATTAAGAGTAGTTGT+AGG | - | chr4.3:20928130-20928149 | MS.gene068019:CDS | 40.0% | |
CTAGAATAAAGAAAGTGGGC+AGG | + | chr4.3:20930356-20930375 | None:intergenic | 40.0% | |
CTGAAAACGGTAACAAAGAC+GGG | + | chr4.3:20929331-20929350 | None:intergenic | 40.0% | |
CTGCTTGTGATGTATGTTTG+TGG | - | chr4.3:20929530-20929549 | MS.gene068019:intron | 40.0% | |
GAGAGAGGAAATGCATATGT+AGG | + | chr4.3:20929858-20929877 | None:intergenic | 40.0% | |
GGCCTAATGGTGAAATAATG+AGG | - | chr4.3:20931661-20931680 | MS.gene068019:intron | 40.0% | |
GGGTCCCATATAAATTTGGT+GGG | - | chr4.3:20929983-20930002 | MS.gene068019:intron | 40.0% | |
GTCAATATATGGGGCCAATA+GGG | + | chr4.3:20928575-20928594 | None:intergenic | 40.0% | |
GTCTTCTTGACATTGTACAC+AGG | - | chr4.3:20928200-20928219 | MS.gene068019:CDS | 40.0% | |
TAAACTTCCACTACAGATCG+AGG | + | chr4.3:20928522-20928541 | None:intergenic | 40.0% | |
TAACTGGATGGATGATTGTG+TGG | - | chr4.3:20929581-20929600 | MS.gene068019:intron | 40.0% | |
TAGTTACTGATAAGTGGGCA+GGG | - | chr4.3:20929633-20929652 | MS.gene068019:intron | 40.0% | |
TATGAGTCATACTCAACAGG+AGG | + | chr4.3:20929615-20929634 | None:intergenic | 40.0% | |
TCGAGATGGTATGTATCACA+AGG | - | chr4.3:20930188-20930207 | MS.gene068019:intron | 40.0% | |
TGATGATAACAGCAGCAAGT+AGG | + | chr4.3:20929247-20929266 | None:intergenic | 40.0% | |
TGGGTCCCATATAAATTTGG+TGG | - | chr4.3:20929982-20930001 | MS.gene068019:intron | 40.0% | |
! | CATTTTTCCAGGATAAGCGA+TGG | - | chr4.3:20929431-20929450 | MS.gene068019:intron | 40.0% |
! | GCTCGGTAAAATTGATAACC+TGG | + | chr4.3:20930841-20930860 | None:intergenic | 40.0% |
! | TACTTGCTGCTGTTATCATC+AGG | - | chr4.3:20929246-20929265 | MS.gene068019:intron | 40.0% |
! | TTCCTTCTACTCTAAGGACT+GGG | + | chr4.3:20929220-20929239 | None:intergenic | 40.0% |
! | TTGATAACCTGGACGAATGT+TGG | + | chr4.3:20930830-20930849 | None:intergenic | 40.0% |
!! | AAGACGGGCTACAATCAATA+TGG | + | chr4.3:20929316-20929335 | None:intergenic | 40.0% |
AAGCACGACGCAAAGTTTGA+TGG | - | chr4.3:20931594-20931613 | MS.gene068019:intron | 45.0% | |
ACACGGCAGTAAACAGAAGA+GGG | + | chr4.3:20931054-20931073 | None:intergenic | 45.0% | |
ACCACTTCTCCAAGGTTAAG+AGG | + | chr4.3:20931630-20931649 | None:intergenic | 45.0% | |
AGACTTTGGACACCGATAGA+TGG | - | chr4.3:20928613-20928632 | MS.gene068019:intron | 45.0% | |
AGCCTAGTGGCTATCAAGTT+AGG | - | chr4.3:20928665-20928684 | MS.gene068019:intron | 45.0% | |
AGGTGCATCCATTCTGTCTA+TGG | + | chr4.3:20929060-20929079 | None:intergenic | 45.0% | |
ATCCTTAATCCGAAGCCTAG+TGG | - | chr4.3:20928652-20928671 | MS.gene068019:intron | 45.0% | |
CAGCAGTAAGCAACTTGACA+AGG | + | chr4.3:20930086-20930105 | None:intergenic | 45.0% | |
CTAGCATCCACAGAAGTTGA+CGG | + | chr4.3:20930956-20930975 | None:intergenic | 45.0% | |
CTATAGCAACACTGAACTGC+AGG | + | chr4.3:20928181-20928200 | None:intergenic | 45.0% | |
CTTAGAAGCCAGTAACTGGA+TGG | - | chr4.3:20929569-20929588 | MS.gene068019:intron | 45.0% | |
CTTCGCAGCAAGACCAATTT+GGG | - | chr4.3:20930795-20930814 | MS.gene068019:CDS | 45.0% | |
GATGAATGGTGGTTTGAACC+AGG | - | chr4.3:20930123-20930142 | MS.gene068019:intron | 45.0% | |
GATGAGGATGCATCTGTTTC+AGG | + | chr4.3:20929038-20929057 | None:intergenic | 45.0% | |
GGTGACTTCCTTCTACTCTA+AGG | + | chr4.3:20929226-20929245 | None:intergenic | 45.0% | |
GTTACCATTTCGCATACCAG+AGG | - | chr4.3:20928922-20928941 | MS.gene068019:CDS | 45.0% | |
GTTGATGCTGCACAAAGAAC+TGG | - | chr4.3:20931705-20931724 | MS.gene068019:CDS | 45.0% | |
GTTGTATCTGCCGTGTTTGA+GGG | - | chr4.3:20930884-20930903 | MS.gene068019:CDS | 45.0% | |
TAGGAGGATGCTTCTGTTTC+AGG | + | chr4.3:20929122-20929141 | None:intergenic | 45.0% | |
TCATTGTCCTCGATCTGTAG+TGG | - | chr4.3:20928512-20928531 | MS.gene068019:intron | 45.0% | |
TCCTCTTAACCTTGGAGAAG+TGG | - | chr4.3:20931626-20931645 | MS.gene068019:intron | 45.0% | |
TCTCAGCTATGCAGAGACAA+TGG | - | chr4.3:20930274-20930293 | MS.gene068019:intron | 45.0% | |
TGAGTATGCTGAACATGGAC+TGG | - | chr4.3:20928950-20928969 | MS.gene068019:CDS | 45.0% | |
TGCTGCACAAAGAACTGGTT+TGG | - | chr4.3:20931710-20931729 | MS.gene068019:CDS | 45.0% | |
TGCTTCAGGTGTCTGATGAA+TGG | - | chr4.3:20930109-20930128 | MS.gene068019:intron | 45.0% | |
TTCAGGTGTCTGATGAATGG+TGG | - | chr4.3:20930112-20930131 | MS.gene068019:intron | 45.0% | |
TTCTTCCTATCCTCCTCAGA+AGG | + | chr4.3:20928384-20928403 | None:intergenic | 45.0% | |
! | AACTGCAGTTGCTTTGCAGT+CGG | - | chr4.3:20929730-20929749 | MS.gene068019:CDS | 45.0% |
! | ACTTCTAAAGGCGAGTTGTC+AGG | + | chr4.3:20928820-20928839 | None:intergenic | 45.0% |
! | ACTTGATAGCCACTAGGCTT+CGG | + | chr4.3:20928664-20928683 | None:intergenic | 45.0% |
! | ACTTTGCGTCGTGCTTTGTT+TGG | + | chr4.3:20931590-20931609 | None:intergenic | 45.0% |
! | AGCCTAACTTGATAGCCACT+AGG | + | chr4.3:20928670-20928689 | None:intergenic | 45.0% |
! | CTTCCTTCTACTCTAAGGAC+TGG | + | chr4.3:20929221-20929240 | None:intergenic | 45.0% |
! | TAGAAGAAAGCCTTCTGAGG+AGG | - | chr4.3:20928371-20928390 | MS.gene068019:intron | 45.0% |
!! | AACTGGTTTGGAGGGAAAAC+TGG | - | chr4.3:20931722-20931741 | MS.gene068019:CDS | 45.0% |
!! | GCACAAAGAACTGGTTTGGA+GGG | - | chr4.3:20931714-20931733 | MS.gene068019:CDS | 45.0% |
!! | TGCACAAAGAACTGGTTTGG+AGG | - | chr4.3:20931713-20931732 | MS.gene068019:CDS | 45.0% |
!! | TATAATAATAAAAGTTAATT+TGG | + | chr4.3:20930603-20930622 | None:intergenic | 5.0% |
!!! | ATATTTTTTGTAATTTTATA+AGG | - | chr4.3:20928343-20928362 | MS.gene068019:CDS | 5.0% |
!!! | TATTTTTTGTAATTTTATAA+GGG | - | chr4.3:20928344-20928363 | MS.gene068019:CDS | 5.0% |
AAGCTTCCCATCGCTTATCC+TGG | + | chr4.3:20929441-20929460 | None:intergenic | 50.0% | |
ACCTTCAACTGCAGTGTGCA+AGG | + | chr4.3:20928797-20928816 | None:intergenic | 50.0% | |
AGAACGCAATTGCTCTTCCC+AGG | + | chr4.3:20931553-20931572 | None:intergenic | 50.0% | |
AGCCACTAGGCTTCGGATTA+AGG | + | chr4.3:20928657-20928676 | None:intergenic | 50.0% | |
AGCGATGGGAAGCTTATGCA+CGG | - | chr4.3:20929446-20929465 | MS.gene068019:intron | 50.0% | |
CACCCAGTCCTTAGAGTAGA+AGG | - | chr4.3:20929215-20929234 | MS.gene068019:intron | 50.0% | |
CACTTGCTTGCCCTCAAACA+CGG | + | chr4.3:20930897-20930916 | None:intergenic | 50.0% | |
CAGCATACTCATGCATCCTC+TGG | + | chr4.3:20928941-20928960 | None:intergenic | 50.0% | |
CCTTCGCAGCAAGACCAATT+TGG | - | chr4.3:20930794-20930813 | MS.gene068019:CDS | 50.0% | |
CCTTCTACCAACATTCGTCC+AGG | - | chr4.3:20930820-20930839 | MS.gene068019:CDS | 50.0% | |
CGTTGTATCTGCCGTGTTTG+AGG | - | chr4.3:20930883-20930902 | MS.gene068019:CDS | 50.0% | |
CTTGGTTCCGTCAACTTCTG+TGG | - | chr4.3:20930946-20930965 | MS.gene068019:intron | 50.0% | |
GACACGGCAGTAAACAGAAG+AGG | + | chr4.3:20931055-20931074 | None:intergenic | 50.0% | |
GACGAGGATGCTTCTGTTTC+AGG | + | chr4.3:20929080-20929099 | None:intergenic | 50.0% | |
GCATCCTCTGGTATGCGAAA+TGG | + | chr4.3:20928929-20928948 | None:intergenic | 50.0% | |
GGTGGTTTGAACCAGGACAT+GGG | - | chr4.3:20930130-20930149 | MS.gene068019:intron | 50.0% | |
GTGGTTTGAACCAGGACATG+GGG | - | chr4.3:20930131-20930150 | MS.gene068019:intron | 50.0% | |
TCCTTGCACACTGCAGTTGA+AGG | - | chr4.3:20928793-20928812 | MS.gene068019:intron | 50.0% | |
TGGTGGTTTGAACCAGGACA+TGG | - | chr4.3:20930129-20930148 | MS.gene068019:intron | 50.0% | |
TTGAACCAGGACATGGGGAT+TGG | - | chr4.3:20930136-20930155 | MS.gene068019:intron | 50.0% | |
! | CCTGGACGAATGTTGGTAGA+AGG | + | chr4.3:20930823-20930842 | None:intergenic | 50.0% |
! | GAAAGCCTTCTGAGGAGGAT+AGG | - | chr4.3:20928376-20928395 | MS.gene068019:intron | 50.0% |
! | GCAAAGTTTGATGGTCCACG+TGG | - | chr4.3:20931603-20931622 | MS.gene068019:intron | 50.0% |
!! | CCAAATTGGTCTTGCTGCGA+AGG | + | chr4.3:20930797-20930816 | None:intergenic | 50.0% |
!! | GCTTACTGCTGACTTGCTTC+AGG | - | chr4.3:20930095-20930114 | MS.gene068019:intron | 50.0% |
!! | GGCCGCACATTGGCTTTATA+AGG | - | chr4.3:20928971-20928990 | MS.gene068019:CDS | 50.0% |
!! | TTGGTAGAAGGCGCCCAAAT+TGG | + | chr4.3:20930811-20930830 | None:intergenic | 50.0% |
CCAAGGTTAAGAGGACCACG+TGG | + | chr4.3:20931621-20931640 | None:intergenic | 55.0% | |
CCACGTGGTCCTCTTAACCT+TGG | - | chr4.3:20931618-20931637 | MS.gene068019:intron | 55.0% | |
CGTGTTTGAGGGCAAGCAAG+TGG | - | chr4.3:20930895-20930914 | MS.gene068019:CDS | 55.0% | |
GTACACCAATCCCCATGTCC+TGG | + | chr4.3:20930144-20930163 | None:intergenic | 55.0% | |
TGCTTTGCAGTCGGAGACGT+AGG | - | chr4.3:20929739-20929758 | MS.gene068019:CDS | 55.0% | |
!! | AACATGGACTGGCCGCACAT+TGG | - | chr4.3:20928961-20928980 | MS.gene068019:CDS | 55.0% |
AAGATGGCACGGCAGCAGAC+TGG | + | chr4.3:20929886-20929905 | None:intergenic | 60.0% | |
AGCAGACTGGTGGCCGAGAG+AGG | + | chr4.3:20929873-20929892 | None:intergenic | 65.0% | |
AGTGGGCAGGGTCTCTCGAG+AGG | - | chr4.3:20929645-20929664 | MS.gene068019:intron | 65.0% | |
ATGGCACGGCAGCAGACTGG+TGG | + | chr4.3:20929883-20929902 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 20928088 | 20931818 | 20928088 | ID=MS.gene068019 |
chr4.3 | mRNA | 20928088 | 20931818 | 20928088 | ID=MS.gene068019.t1;Parent=MS.gene068019 |
chr4.3 | exon | 20931685 | 20931818 | 20931685 | ID=MS.gene068019.t1.exon1;Parent=MS.gene068019.t1 |
chr4.3 | CDS | 20931685 | 20931818 | 20931685 | ID=cds.MS.gene068019.t1;Parent=MS.gene068019.t1 |
chr4.3 | exon | 20931225 | 20931291 | 20931225 | ID=MS.gene068019.t1.exon2;Parent=MS.gene068019.t1 |
chr4.3 | CDS | 20931225 | 20931291 | 20931225 | ID=cds.MS.gene068019.t1;Parent=MS.gene068019.t1 |
chr4.3 | exon | 20931051 | 20931113 | 20931051 | ID=MS.gene068019.t1.exon3;Parent=MS.gene068019.t1 |
chr4.3 | CDS | 20931051 | 20931113 | 20931051 | ID=cds.MS.gene068019.t1;Parent=MS.gene068019.t1 |
chr4.3 | exon | 20930639 | 20930964 | 20930639 | ID=MS.gene068019.t1.exon4;Parent=MS.gene068019.t1 |
chr4.3 | CDS | 20930639 | 20930964 | 20930639 | ID=cds.MS.gene068019.t1;Parent=MS.gene068019.t1 |
chr4.3 | exon | 20930426 | 20930555 | 20930426 | ID=MS.gene068019.t1.exon5;Parent=MS.gene068019.t1 |
chr4.3 | CDS | 20930426 | 20930555 | 20930426 | ID=cds.MS.gene068019.t1;Parent=MS.gene068019.t1 |
chr4.3 | exon | 20929697 | 20929789 | 20929697 | ID=MS.gene068019.t1.exon6;Parent=MS.gene068019.t1 |
chr4.3 | CDS | 20929697 | 20929789 | 20929697 | ID=cds.MS.gene068019.t1;Parent=MS.gene068019.t1 |
chr4.3 | exon | 20928918 | 20929103 | 20928918 | ID=MS.gene068019.t1.exon7;Parent=MS.gene068019.t1 |
chr4.3 | CDS | 20928918 | 20929103 | 20928918 | ID=cds.MS.gene068019.t1;Parent=MS.gene068019.t1 |
chr4.3 | exon | 20928088 | 20928381 | 20928088 | ID=MS.gene068019.t1.exon8;Parent=MS.gene068019.t1 |
chr4.3 | CDS | 20928088 | 20928381 | 20928088 | ID=cds.MS.gene068019.t1;Parent=MS.gene068019.t1 |
Gene Sequence |
Protein sequence |