AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059285


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059285.t1 MTR_2g087590 96.377 276 10 0 20 295 34 309 0.0 553
MS.gene059285.t1 MTR_1g070230 58.182 275 115 0 21 295 28 302 5.47e-118 343
MS.gene059285.t1 MTR_2g098110 37.956 274 161 2 25 295 355 622 4.09e-55 189
MS.gene059285.t1 MTR_4g064780 29.187 209 114 7 96 287 558 749 2.04e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059285.t1 AT3G44160 76.087 276 66 0 24 299 38 313 7.43e-161 452
MS.gene059285.t1 AT3G48620 60.909 220 67 3 94 297 25 241 6.44e-84 256
MS.gene059285.t1 AT5G19620 40.511 274 154 2 25 295 415 682 1.06e-58 200
MS.gene059285.t1 AT3G46740 28.899 218 119 8 88 287 564 763 8.04e-11 63.2

Find 81 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTTCCGCCAAATAAATT+TGG 0.142351 2.2:+11526783 None:intergenic
AATCCTCTTTCACTAGTAAT+TGG 0.162368 2.2:-11527066 MS.gene059285:CDS
ATCAAACATCCAAATTTATT+TGG 0.174340 2.2:-11526792 MS.gene059285:CDS
ATGTAACACTTGGTACTTAT+TGG 0.208264 2.2:+11527605 None:intergenic
GGTGAAGGAGCAGTTGGTTC+TGG 0.281377 2.2:-11525324 MS.gene059285:CDS
GAGCGGGAGAAATTGTTTAT+AGG 0.292776 2.2:+11526374 None:intergenic
ACGGGTTTGCTTTGACTTGC+AGG 0.300006 2.2:-11526068 MS.gene059285:intron
TGTAACACTTGGTACTTATT+GGG 0.336206 2.2:+11527606 None:intergenic
AGCGGGAGAAATTGTTTATA+GGG 0.372125 2.2:+11526375 None:intergenic
CGGTCAAATATGTTTATGTT+TGG 0.382536 2.2:-11524770 MS.gene059285:CDS
GTGAGAAGCTTGATGTTTCA+TGG 0.384645 2.2:-11526764 MS.gene059285:CDS
TTACAGGTGGTTCAATCGTT+GGG 0.396160 2.2:-11525404 MS.gene059285:CDS
CTCGGAAGTGTCCGAGGGTA+TGG 0.399077 2.2:-11525345 MS.gene059285:CDS
TCGTAGCAACAAATTTAAAT+CGG 0.401389 2.2:+11525709 None:intergenic
TCATCAGTCTTTCGTGGTGC+AGG 0.423045 2.2:-11526676 MS.gene059285:intron
ATCCTCTTTCACTAGTAATT+GGG 0.431742 2.2:-11527065 MS.gene059285:CDS
CTCCCAATTACTAGTGAAAG+AGG 0.434708 2.2:+11527063 None:intergenic
CACAACCAGCATAAAATTTG+AGG 0.435411 2.2:-11526273 MS.gene059285:intron
TGGCAGTCCACATGACAGTA+TGG 0.439822 2.2:-11525966 MS.gene059285:CDS
CAGAAATTACCAACCTTGTC+AGG 0.443157 2.2:+11525658 None:intergenic
CGGACTGGTTATCTTGTACC+TGG 0.449059 2.2:-11524901 MS.gene059285:intron
TTTAAATTTGTTGCTACGAA+AGG 0.451134 2.2:-11525705 MS.gene059285:CDS
AATTTCTCCCGCTCGGGAAG+TGG 0.453119 2.2:-11526365 MS.gene059285:CDS
ATTTATCTAGATTAACAGTT+GGG 0.453900 2.2:-11526334 MS.gene059285:CDS
TCTTGCTCATCAGTCTTTCG+TGG 0.456421 2.2:-11526682 MS.gene059285:CDS
ATTATCCACTTAGAAAGAAC+AGG 0.458623 2.2:+11525738 None:intergenic
GTGAAGGAGCAGTTGGTTCT+GGG 0.468959 2.2:-11525323 MS.gene059285:CDS
ATCTAGATTAACAGTTGGGA+TGG 0.469448 2.2:-11526330 MS.gene059285:CDS
ATACCATGGATTCCGATCTC+TGG 0.476671 2.2:+11526398 None:intergenic
TAGCGAACTGACTCTCCCTT+TGG 0.478420 2.2:-11525280 MS.gene059285:intron
AAACATCCAAATTTATTTGG+CGG 0.483962 2.2:-11526789 MS.gene059285:CDS
TGGTTCAATCGTTGGGGACA+TGG 0.488806 2.2:-11525397 MS.gene059285:CDS
GTATTCCTGTTCTTTCTAAG+TGG 0.494653 2.2:-11525743 MS.gene059285:CDS
TTTCTCCCGCTCGGGAAGTG+GGG 0.499924 2.2:-11526363 MS.gene059285:CDS
CTTACAGGTGGTTCAATCGT+TGG 0.500285 2.2:-11525405 MS.gene059285:CDS
ATTTCTCCCGCTCGGGAAGT+GGG 0.501912 2.2:-11526364 MS.gene059285:CDS
TGGATTGCGGAACAGATTTG+CGG 0.507880 2.2:-11524921 MS.gene059285:CDS
TTCACTACAGACTAAGATGT+TGG 0.510572 2.2:-11524959 MS.gene059285:intron
CTGCTCCACTTTGAACTCAC+AGG 0.511177 2.2:+11526296 None:intergenic
TGCGGAACAGATTTGCGGAC+TGG 0.512104 2.2:-11524916 MS.gene059285:CDS
ATATAAGCAGGGATCGTGAC+GGG 0.513332 2.2:-11526086 MS.gene059285:CDS
TATAAACAATTTCTCCCGCT+CGG 0.515264 2.2:-11526372 MS.gene059285:CDS
AATTTATCTAGATTAACAGT+TGG 0.516713 2.2:-11526335 MS.gene059285:CDS
ATGATGGTCGCAATATAAGC+AGG 0.520497 2.2:-11526098 MS.gene059285:CDS
ATAAACAATTTCTCCCGCTC+GGG 0.522046 2.2:-11526371 MS.gene059285:CDS
GACTAAGATGTTGGAAGGTG+CGG 0.524427 2.2:-11524950 MS.gene059285:CDS
CATTCTCTTTCACCAGAGAT+CGG 0.529149 2.2:-11526410 MS.gene059285:CDS
TGAGAAGCTTGATGTTTCAT+GGG 0.536213 2.2:-11526763 MS.gene059285:CDS
GCTACGAAAGGAATCAAACT+TGG 0.538847 2.2:-11525693 MS.gene059285:CDS
TGGTTCTGGGAGATCATGCC+TGG 0.541615 2.2:-11525310 MS.gene059285:CDS
TTCTCCCGCTCGGGAAGTGG+GGG 0.542862 2.2:-11526362 MS.gene059285:CDS
GCTTGATGTTTCATGGGACA+AGG 0.545752 2.2:-11526757 MS.gene059285:CDS
TTGCGACCATCATCGTTCAA+TGG 0.552385 2.2:+11526108 None:intergenic
GTTCGTCCATTGAACGATGA+TGG 0.559073 2.2:-11526114 MS.gene059285:CDS
CCAATGGAAAATGCTTGGTA+AGG 0.570469 2.2:+11525372 None:intergenic
AACAGTTGGGATGGATCTGA+AGG 0.572536 2.2:-11526321 MS.gene059285:CDS
AATTGTTTATAGGGATACCA+TGG 0.576485 2.2:+11526384 None:intergenic
GACCAACACTTCTCCTGACA+AGG 0.576665 2.2:-11525671 MS.gene059285:intron
AACCTTGTCAGGAGAAGTGT+TGG 0.579331 2.2:+11525669 None:intergenic
TCACCAGAGATCGGAATCCA+TGG 0.580861 2.2:-11526401 MS.gene059285:CDS
CTCTTTCACTAGTAATTGGG+AGG 0.582217 2.2:-11527062 MS.gene059285:intron
CTGCTCCTTCACCATACCCT+CGG 0.582460 2.2:+11525334 None:intergenic
CTACAGACTAAGATGTTGGA+AGG 0.583931 2.2:-11524955 MS.gene059285:intron
CTTGATGTTTCATGGGACAA+GGG 0.592569 2.2:-11526756 MS.gene059285:CDS
TCAGTTCGCTATTAGCCACC+AGG 0.607710 2.2:+11525292 None:intergenic
AGTGTCCGAGGGTATGGTGA+AGG 0.614703 2.2:-11525339 MS.gene059285:CDS
TACAGGTGGTTCAATCGTTG+GGG 0.618411 2.2:-11525403 MS.gene059285:CDS
AATTGCTTATAGAAGGCCAC+GGG 0.629000 2.2:-11526712 MS.gene059285:CDS
GGGTATGGTGAAGGAGCAGT+TGG 0.629254 2.2:-11525330 MS.gene059285:CDS
CCGACATGATAACATCAACA+AGG 0.634353 2.2:-11527629 None:intergenic
TAATTGCTTATAGAAGGCCA+CGG 0.639514 2.2:-11526713 MS.gene059285:CDS
ATTGCACGTGATGTAACACT+TGG 0.639766 2.2:+11527595 None:intergenic
TTTAATCTTCAAATAGAACA+AGG 0.640667 2.2:-11525765 MS.gene059285:CDS
AATATAAGCAGGGATCGTGA+CGG 0.648266 2.2:-11526087 MS.gene059285:CDS
TGAGCAAGACATTCTTCCCG+TGG 0.649237 2.2:+11526696 None:intergenic
TGATGGTCGCAATATAAGCA+GGG 0.653566 2.2:-11526097 MS.gene059285:CDS
GCAAGAGTCTCAACACACAA+AGG 0.657145 2.2:-11525933 MS.gene059285:CDS
TCGTCTGACAGACTTACAGG+TGG 0.660288 2.2:-11525417 MS.gene059285:intron
TTCTGGGAGATCATGCCTGG+TGG 0.662291 2.2:-11525307 MS.gene059285:CDS
AAGACTACCATACTGTCATG+TGG 0.666248 2.2:+11525959 None:intergenic
AGGAACCTGTGAGTTCAAAG+TGG 0.684187 2.2:-11526301 MS.gene059285:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATAAATTATGAATTTTA+AGG - chr2.2:11527208-11527227 MS.gene059285:intron 10.0%
!!! TTGTTTATCATTTTATTTTA+TGG - chr2.2:11525757-11525776 MS.gene059285:CDS 10.0%
!! ATATAATCACATAGAAAATA+GGG + chr2.2:11526917-11526936 None:intergenic 15.0%
!! CTATATATATAATCTATCAA+AGG - chr2.2:11524960-11524979 MS.gene059285:intron 15.0%
!! TATATAATCACATAGAAAAT+AGG + chr2.2:11526918-11526937 None:intergenic 15.0%
!!! AATTTGAATTTTTCTTTAAC+AGG - chr2.2:11525283-11525302 MS.gene059285:CDS 15.0%
!!! ACGAAATTGTTTTTATTTAA+TGG - chr2.2:11524996-11525015 MS.gene059285:intron 15.0%
!!! ATATTTTAATTGCTTATAGA+AGG - chr2.2:11525662-11525681 MS.gene059285:intron 15.0%
!!! TAAATAAACTTTTGTTTCAA+TGG - chr2.2:11525808-11525827 MS.gene059285:intron 15.0%
!! AAAACAAAACAATCTTAAAG+TGG + chr2.2:11524912-11524931 None:intergenic 20.0%
!! AAATAGAATACATTAATGCT+TGG - chr2.2:11526820-11526839 MS.gene059285:intron 20.0%
!! AATAAAAACAATTTCGTAAG+AGG + chr2.2:11524993-11525012 None:intergenic 20.0%
!! AATAGAATACATTAATGCTT+GGG - chr2.2:11526821-11526840 MS.gene059285:intron 20.0%
!! AATGTGTATATGTTTAATTG+TGG + chr2.2:11527334-11527353 None:intergenic 20.0%
!! AATTTATCTAGATTAACAGT+TGG - chr2.2:11526046-11526065 MS.gene059285:intron 20.0%
!! ATCAAACATCCAAATTTATT+TGG - chr2.2:11525589-11525608 MS.gene059285:intron 20.0%
!! ATTTATCTAGATTAACAGTT+GGG - chr2.2:11526047-11526066 MS.gene059285:intron 20.0%
!! ATTTGAAGATTAAACTGAAA+AGG + chr2.2:11526610-11526629 None:intergenic 20.0%
!! GTGTCTTCAATATAAAATAT+TGG - chr2.2:11525485-11525504 MS.gene059285:intron 20.0%
!! TCATTCATTTACAAAATCAT+GGG + chr2.2:11525539-11525558 None:intergenic 20.0%
!! TTTAATCTTCAAATAGAACA+AGG - chr2.2:11526616-11526635 MS.gene059285:intron 20.0%
!!! ATTTTATTTTATGGTATGAG+AGG - chr2.2:11525766-11525785 MS.gene059285:CDS 20.0%
!!! CTTTACATTACTATTTGTTT+TGG - chr2.2:11526199-11526218 MS.gene059285:intron 20.0%
! AAACATCCAAATTTATTTGG+CGG - chr2.2:11525592-11525611 MS.gene059285:intron 25.0%
! ATTCCTAGTTCCTATTTATA+TGG - chr2.2:11526524-11526543 MS.gene059285:intron 25.0%
! GTCATTCATTTACAAAATCA+TGG + chr2.2:11525540-11525559 None:intergenic 25.0%
! TCGTAGCAACAAATTTAAAT+CGG + chr2.2:11526675-11526694 None:intergenic 25.0%
! TGGTTAATAGCCATATAAAT+AGG + chr2.2:11526537-11526556 None:intergenic 25.0%
!!! TGATGCGTTTTTAATTGAAT+GGG - chr2.2:11525020-11525039 MS.gene059285:intron 25.0%
!!! TTGATGCGTTTTTAATTGAA+TGG - chr2.2:11525019-11525038 MS.gene059285:intron 25.0%
!!! TTTAAATTTGTTGCTACGAA+AGG - chr2.2:11526676-11526695 MS.gene059285:intron 25.0%
AAACAATTTCGTAAGAGGTT+TGG + chr2.2:11524988-11525007 None:intergenic 30.0%
AAATAGGGTAACTCTATTTC+AGG + chr2.2:11526902-11526921 None:intergenic 30.0%
AATCCTCTTTCACTAGTAAT+TGG - chr2.2:11525315-11525334 MS.gene059285:CDS 30.0%
AATTCAGATACACGACTTAT+TGG + chr2.2:11526557-11526576 None:intergenic 30.0%
AATTGTTTATAGGGATACCA+TGG + chr2.2:11526000-11526019 None:intergenic 30.0%
ATCCTCTTTCACTAGTAATT+GGG - chr2.2:11525316-11525335 MS.gene059285:CDS 30.0%
ATGTAACACTTGGTACTTAT+TGG + chr2.2:11524779-11524798 None:intergenic 30.0%
ATTATCCACTTAGAAAGAAC+AGG + chr2.2:11526646-11526665 None:intergenic 30.0%
ATTATTATCAGTGTCGTGTT+TGG + chr2.2:11525410-11525429 None:intergenic 30.0%
CAATTAGAGAAACAACAATC+TGG - chr2.2:11526785-11526804 MS.gene059285:CDS 30.0%
CGGTCAAATATGTTTATGTT+TGG - chr2.2:11527611-11527630 MS.gene059285:CDS 30.0%
TAACATGTGCTGAAAATTCA+CGG + chr2.2:11527186-11527205 None:intergenic 30.0%
TAGCCATATAAATAGGAACT+AGG + chr2.2:11526530-11526549 None:intergenic 30.0%
TCGTGAATCAAGGATAATAT+CGG - chr2.2:11526146-11526165 MS.gene059285:intron 30.0%
TGTAAATATTGCGTACCAAA+GGG + chr2.2:11527119-11527138 None:intergenic 30.0%
TGTAACACTTGGTACTTATT+GGG + chr2.2:11524778-11524797 None:intergenic 30.0%
TTGTAAATATTGCGTACCAA+AGG + chr2.2:11527120-11527139 None:intergenic 30.0%
!! AACCAAGGATTTTAGTATTC+CGG - chr2.2:11526337-11526356 MS.gene059285:CDS 30.0%
!! CTCTATTTCAGGTTGAAATT+AGG + chr2.2:11526891-11526910 None:intergenic 30.0%
!! TGTTTCAATGGATTTTTCTG+TGG - chr2.2:11525820-11525839 MS.gene059285:intron 30.0%
AACCGGAATACTAAAATCCT+TGG + chr2.2:11526342-11526361 None:intergenic 35.0%
AGCGGGAGAAATTGTTTATA+GGG + chr2.2:11526009-11526028 None:intergenic 35.0%
ATAGGAACTAGGAATCAAAC+TGG + chr2.2:11526519-11526538 None:intergenic 35.0%
ATCTAGATTAACAGTTGGGA+TGG - chr2.2:11526051-11526070 MS.gene059285:intron 35.0%
ATGTACATTGCTTATTGCAG+TGG - chr2.2:11526395-11526414 MS.gene059285:CDS 35.0%
ATTTGATGCTCAATACCTTC+AGG - chr2.2:11525201-11525220 MS.gene059285:intron 35.0%
CACAACCAGCATAAAATTTG+AGG - chr2.2:11526108-11526127 MS.gene059285:CDS 35.0%
GAGCTGAGAAAAATGAATAG+AGG + chr2.2:11525232-11525251 None:intergenic 35.0%
GCAAAATGATATTACTCACC+AGG + chr2.2:11527501-11527520 None:intergenic 35.0%
GCTGCATATGTTGAAGATAT+TGG - chr2.2:11525509-11525528 MS.gene059285:intron 35.0%
GTATTCCTGTTCTTTCTAAG+TGG - chr2.2:11526638-11526657 MS.gene059285:intron 35.0%
TAATGCTTGGGTTCACTAAT+AGG - chr2.2:11526833-11526852 MS.gene059285:intron 35.0%
TAATTGCTTATAGAAGGCCA+CGG - chr2.2:11525668-11525687 MS.gene059285:intron 35.0%
TATAAACAATTTCTCCCGCT+CGG - chr2.2:11526009-11526028 MS.gene059285:intron 35.0%
TCACTTCCGCCAAATAAATT+TGG + chr2.2:11525601-11525620 None:intergenic 35.0%
TGAGAAGCTTGATGTTTCAT+GGG - chr2.2:11525618-11525637 MS.gene059285:intron 35.0%
TGTTGTGTTTCGTAACGTTA+GGG + chr2.2:11524936-11524955 None:intergenic 35.0%
TTCACTACAGACTAAGATGT+TGG - chr2.2:11527422-11527441 MS.gene059285:intron 35.0%
TTTCAAATCAGTCATGCACA+GGG + chr2.2:11527265-11527284 None:intergenic 35.0%
! CCAGCATAAAATTTGAGGTT+CGG - chr2.2:11526113-11526132 MS.gene059285:CDS 35.0%
! CTTACCAAGCATTTTCCATT+GGG - chr2.2:11527010-11527029 MS.gene059285:intron 35.0%
! GATTTTTCTGTGGCAATTAG+AGG - chr2.2:11525830-11525849 MS.gene059285:intron 35.0%
! TGGTCATCTGCTTTCATTTT+TGG + chr2.2:11527314-11527333 None:intergenic 35.0%
! TTACCAAGCATTTTCCATTG+GGG - chr2.2:11527011-11527030 MS.gene059285:intron 35.0%
!! CAGTTCGACATTTTGAAAAC+CGG + chr2.2:11526359-11526378 None:intergenic 35.0%
!! TCATCTGCTTTCATTTTTGG+AGG + chr2.2:11527311-11527330 None:intergenic 35.0%
!!! ACATCCAACGATTTTTAGCA+CGG - chr2.2:11527591-11527610 MS.gene059285:CDS 35.0%
AAGACTACCATACTGTCATG+TGG + chr2.2:11526425-11526444 None:intergenic 40.0%
AATATAAGCAGGGATCGTGA+CGG - chr2.2:11526294-11526313 MS.gene059285:CDS 40.0%
AATTGCTTATAGAAGGCCAC+GGG - chr2.2:11525669-11525688 MS.gene059285:intron 40.0%
AATTGTAACCTTTGCCAGCA+TGG + chr2.2:11525061-11525080 None:intergenic 40.0%
ACGACGAGTATACTGTTGTA+TGG - chr2.2:11524809-11524828 MS.gene059285:intron 40.0%
AGTAGTGCATTGGATTGTTG+GGG - chr2.2:11525361-11525380 MS.gene059285:CDS 40.0%
ATAAACAATTTCTCCCGCTC+GGG - chr2.2:11526010-11526029 MS.gene059285:intron 40.0%
ATAGCTGCATGTGTCTTTGT+CGG - chr2.2:11525453-11525472 MS.gene059285:intron 40.0%
ATGATGGTCGCAATATAAGC+AGG - chr2.2:11526283-11526302 MS.gene059285:CDS 40.0%
ATTGCACGTGATGTAACACT+TGG + chr2.2:11524789-11524808 None:intergenic 40.0%
CACTTTGATCAGTAGTGCAT+TGG - chr2.2:11525351-11525370 MS.gene059285:CDS 40.0%
CAGAAATTACCAACCTTGTC+AGG + chr2.2:11526726-11526745 None:intergenic 40.0%
CAGTAGTGCATTGGATTGTT+GGG - chr2.2:11525360-11525379 MS.gene059285:CDS 40.0%
CATTCTCTTTCACCAGAGAT+CGG - chr2.2:11525971-11525990 MS.gene059285:intron 40.0%
CCAATGGAAAATGCTTGGTA+AGG + chr2.2:11527012-11527031 None:intergenic 40.0%
CTACAGACTAAGATGTTGGA+AGG - chr2.2:11527426-11527445 MS.gene059285:intron 40.0%
CTCCCAATTACTAGTGAAAG+AGG + chr2.2:11525321-11525340 None:intergenic 40.0%
CTCTTTCACTAGTAATTGGG+AGG - chr2.2:11525319-11525338 MS.gene059285:CDS 40.0%
CTTGATGTTTCATGGGACAA+GGG - chr2.2:11525625-11525644 MS.gene059285:intron 40.0%
CTTTCAAATCAGTCATGCAC+AGG + chr2.2:11527266-11527285 None:intergenic 40.0%
GAGCGGGAGAAATTGTTTAT+AGG + chr2.2:11526010-11526029 None:intergenic 40.0%
GCTACGAAAGGAATCAAACT+TGG - chr2.2:11526688-11526707 MS.gene059285:CDS 40.0%
GTGAAAGAGAATGCTGCAAA+GGG + chr2.2:11525964-11525983 None:intergenic 40.0%
GTGAGAAGCTTGATGTTTCA+TGG - chr2.2:11525617-11525636 MS.gene059285:intron 40.0%
GTGTTGTGTTTCGTAACGTT+AGG + chr2.2:11524937-11524956 None:intergenic 40.0%
GTTGTGTTTCGTAACGTTAG+GGG + chr2.2:11524935-11524954 None:intergenic 40.0%
TCAGTAGTGCATTGGATTGT+TGG - chr2.2:11525359-11525378 MS.gene059285:CDS 40.0%
TGAAAGAGAATGCTGCAAAG+GGG + chr2.2:11525963-11525982 None:intergenic 40.0%
TGAATAGAGGTGAAACCTGA+AGG + chr2.2:11525219-11525238 None:intergenic 40.0%
TGATGGTCGCAATATAAGCA+GGG - chr2.2:11526284-11526303 MS.gene059285:CDS 40.0%
TGTAAGTCTGTCAGACGAAA+AGG + chr2.2:11526962-11526981 None:intergenic 40.0%
TTACAGGTGGTTCAATCGTT+GGG - chr2.2:11526977-11526996 MS.gene059285:intron 40.0%
TTGACCGTGCTAAAAATCGT+TGG + chr2.2:11527598-11527617 None:intergenic 40.0%
! ATGCGTCTTTTCGTGAATCA+AGG - chr2.2:11526136-11526155 MS.gene059285:intron 40.0%
! CCGAACCTCAAATTTTATGC+TGG + chr2.2:11526116-11526135 None:intergenic 40.0%
! CCTTACCAAGCATTTTCCAT+TGG - chr2.2:11527009-11527028 MS.gene059285:intron 40.0%
! TACCAAGCATTTTCCATTGG+GGG - chr2.2:11527012-11527031 MS.gene059285:intron 40.0%
! TTTTCGTCTGACAGACTTAC+AGG - chr2.2:11526961-11526980 MS.gene059285:intron 40.0%
AACACTTCTCCTGACAAGGT+TGG - chr2.2:11526714-11526733 MS.gene059285:CDS 45.0%
AACAGTTGGGATGGATCTGA+AGG - chr2.2:11526060-11526079 MS.gene059285:intron 45.0%
AGGAACCTGTGAGTTCAAAG+TGG - chr2.2:11526080-11526099 MS.gene059285:CDS 45.0%
ATACCATGGATTCCGATCTC+TGG + chr2.2:11525986-11526005 None:intergenic 45.0%
ATATAAGCAGGGATCGTGAC+GGG - chr2.2:11526295-11526314 MS.gene059285:CDS 45.0%
ATGGAGTGCGAAGAAACGAA+AGG - chr2.2:11524828-11524847 MS.gene059285:intron 45.0%
ATGGTATGAGAGGTTCTGCT+AGG - chr2.2:11525776-11525795 MS.gene059285:intron 45.0%
CTTACAGGTGGTTCAATCGT+TGG - chr2.2:11526976-11526995 MS.gene059285:intron 45.0%
GACTAAGATGTTGGAAGGTG+CGG - chr2.2:11527431-11527450 MS.gene059285:intron 45.0%
GCAAGAGTCTCAACACACAA+AGG - chr2.2:11526448-11526467 MS.gene059285:intron 45.0%
GCTTGATGTTTCATGGGACA+AGG - chr2.2:11525624-11525643 MS.gene059285:intron 45.0%
GGTGAAAGAGAATGCTGCAA+AGG + chr2.2:11525965-11525984 None:intergenic 45.0%
GTAGTGCATTGGATTGTTGG+GGG - chr2.2:11525362-11525381 MS.gene059285:CDS 45.0%
GTTCGTCCATTGAACGATGA+TGG - chr2.2:11526267-11526286 MS.gene059285:intron 45.0%
TACAGGTGGTTCAATCGTTG+GGG - chr2.2:11526978-11526997 MS.gene059285:intron 45.0%
TCTTGCTCATCAGTCTTTCG+TGG - chr2.2:11525699-11525718 MS.gene059285:CDS 45.0%
TGGAGTGCGAAGAAACGAAA+GGG - chr2.2:11524829-11524848 MS.gene059285:intron 45.0%
TGGATTGCGGAACAGATTTG+CGG - chr2.2:11527460-11527479 MS.gene059285:intron 45.0%
TTGCGACCATCATCGTTCAA+TGG + chr2.2:11526276-11526295 None:intergenic 45.0%
! AACCTTGTCAGGAGAAGTGT+TGG + chr2.2:11526715-11526734 None:intergenic 45.0%
! ACCAAGCATTTTCCATTGGG+GGG - chr2.2:11527013-11527032 MS.gene059285:intron 45.0%
!! CTTTGACTTGCAGGTAACCA+AGG - chr2.2:11526322-11526341 MS.gene059285:CDS 45.0%
!! GGTGCGGTTTTTATGGATTG+CGG - chr2.2:11527447-11527466 MS.gene059285:intron 45.0%
!! GTTGGAAGGTGCGGTTTTTA+TGG - chr2.2:11527440-11527459 MS.gene059285:intron 45.0%
!!! TTCAATTTTTTTTATAATAA+CGG - chr2.2:11525254-11525273 MS.gene059285:intron 5.0%
AAGGTTGTGCGCTCAGTTAG+TGG + chr2.2:11526591-11526610 None:intergenic 50.0%
CATGTGTCTTTGTCGGACAC+TGG - chr2.2:11525460-11525479 MS.gene059285:intron 50.0%
CTGCTCCACTTTGAACTCAC+AGG + chr2.2:11526088-11526107 None:intergenic 50.0%
GACCAACACTTCTCCTGACA+AGG - chr2.2:11526710-11526729 MS.gene059285:CDS 50.0%
GTCTGTCAGACGAAAAGGCA+TGG + chr2.2:11526957-11526976 None:intergenic 50.0%
TCACCAGAGATCGGAATCCA+TGG - chr2.2:11525980-11525999 MS.gene059285:intron 50.0%
TCAGTTCGCTATTAGCCACC+AGG + chr2.2:11527092-11527111 None:intergenic 50.0%
TCATCAGTCTTTCGTGGTGC+AGG - chr2.2:11525705-11525724 MS.gene059285:CDS 50.0%
TCGTCTGACAGACTTACAGG+TGG - chr2.2:11526964-11526983 MS.gene059285:intron 50.0%
TGAGAGGTTCTGCTAGGCAA+TGG - chr2.2:11525782-11525801 MS.gene059285:intron 50.0%
TGAGCAAGACATTCTTCCCG+TGG + chr2.2:11525688-11525707 None:intergenic 50.0%
TGGACGAACATGCTGCATGA+TGG + chr2.2:11526256-11526275 None:intergenic 50.0%
TGGCAGTCCACATGACAGTA+TGG - chr2.2:11526415-11526434 MS.gene059285:intron 50.0%
TGGTTCAATCGTTGGGGACA+TGG - chr2.2:11526984-11527003 MS.gene059285:intron 50.0%
TTGTTGGGGGCTATAAAGCG+CGG - chr2.2:11525375-11525394 MS.gene059285:CDS 50.0%
! GTGAAGGAGCAGTTGGTTCT+GGG - chr2.2:11527058-11527077 MS.gene059285:intron 50.0%
! TAGCGAACTGACTCTCCCTT+TGG - chr2.2:11527101-11527120 MS.gene059285:intron 50.0%
!! AAGAGCATCCATGCTGGCAA+AGG - chr2.2:11525050-11525069 MS.gene059285:intron 50.0%
!! ACGGGTTTGCTTTGACTTGC+AGG - chr2.2:11526313-11526332 MS.gene059285:CDS 50.0%
!! CGGACTGGTTATCTTGTACC+TGG - chr2.2:11527480-11527499 MS.gene059285:intron 50.0%
!! GCTCAAAAGAGCATCCATGC+TGG - chr2.2:11525044-11525063 MS.gene059285:intron 50.0%
AATTTCTCCCGCTCGGGAAG+TGG - chr2.2:11526016-11526035 MS.gene059285:intron 55.0%
ATTTCTCCCGCTCGGGAAGT+GGG - chr2.2:11526017-11526036 MS.gene059285:intron 55.0%
CAGTCTTTCGTGGTGCAGGT+TGG - chr2.2:11525709-11525728 MS.gene059285:CDS 55.0%
CTGCTCCTTCACCATACCCT+CGG + chr2.2:11527050-11527069 None:intergenic 55.0%
GCCCCCCAATGGAAAATGCT+TGG + chr2.2:11527017-11527036 None:intergenic 55.0%
GGGTATGGTGAAGGAGCAGT+TGG - chr2.2:11527051-11527070 MS.gene059285:intron 55.0%
TGCGGAACAGATTTGCGGAC+TGG - chr2.2:11527465-11527484 MS.gene059285:intron 55.0%
! AGTGTCCGAGGGTATGGTGA+AGG - chr2.2:11527042-11527061 MS.gene059285:intron 55.0%
! GCATTTTCCATTGGGGGGCT+CGG - chr2.2:11527018-11527037 MS.gene059285:intron 55.0%
! GGTGAAGGAGCAGTTGGTTC+TGG - chr2.2:11527057-11527076 MS.gene059285:intron 55.0%
! TTCTGGGAGATCATGCCTGG+TGG - chr2.2:11527074-11527093 MS.gene059285:CDS 55.0%
!! TGGTTCTGGGAGATCATGCC+TGG - chr2.2:11527071-11527090 MS.gene059285:CDS 55.0%
TTACACCCCCACTTCCCGAG+CGG + chr2.2:11526027-11526046 None:intergenic 60.0%
TTTCTCCCGCTCGGGAAGTG+GGG - chr2.2:11526018-11526037 MS.gene059285:intron 60.0%
!! CTCGGAAGTGTCCGAGGGTA+TGG - chr2.2:11527036-11527055 MS.gene059285:intron 60.0%
GACACTTCCGAGCCCCCCAA+TGG + chr2.2:11527028-11527047 None:intergenic 65.0%
TACACCCCCACTTCCCGAGC+GGG + chr2.2:11526026-11526045 None:intergenic 65.0%
TTCTCCCGCTCGGGAAGTGG+GGG - chr2.2:11526019-11526038 MS.gene059285:intron 65.0%
!! GGGGGCTCGGAAGTGTCCGA+GGG - chr2.2:11527031-11527050 MS.gene059285:intron 70.0%
!! GGGGGGCTCGGAAGTGTCCG+AGG - chr2.2:11527030-11527049 MS.gene059285:intron 75.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 11524757 11527646 11524757 ID=MS.gene059285
chr2.2 mRNA 11524757 11527646 11524757 ID=MS.gene059285.t1;Parent=MS.gene059285
chr2.2 exon 11527588 11527646 11527588 ID=MS.gene059285.t1.exon1;Parent=MS.gene059285.t1
chr2.2 CDS 11527588 11527646 11527588 ID=cds.MS.gene059285.t1;Parent=MS.gene059285.t1
chr2.2 exon 11527063 11527098 11527063 ID=MS.gene059285.t1.exon2;Parent=MS.gene059285.t1
chr2.2 CDS 11527063 11527098 11527063 ID=cds.MS.gene059285.t1;Parent=MS.gene059285.t1
chr2.2 exon 11526677 11526821 11526677 ID=MS.gene059285.t1.exon3;Parent=MS.gene059285.t1
chr2.2 CDS 11526677 11526821 11526677 ID=cds.MS.gene059285.t1;Parent=MS.gene059285.t1
chr2.2 exon 11526274 11526432 11526274 ID=MS.gene059285.t1.exon4;Parent=MS.gene059285.t1
chr2.2 CDS 11526274 11526432 11526274 ID=cds.MS.gene059285.t1;Parent=MS.gene059285.t1
chr2.2 exon 11526069 11526139 11526069 ID=MS.gene059285.t1.exon5;Parent=MS.gene059285.t1
chr2.2 CDS 11526069 11526139 11526069 ID=cds.MS.gene059285.t1;Parent=MS.gene059285.t1
chr2.2 exon 11525910 11525988 11525910 ID=MS.gene059285.t1.exon6;Parent=MS.gene059285.t1
chr2.2 CDS 11525910 11525988 11525910 ID=cds.MS.gene059285.t1;Parent=MS.gene059285.t1
chr2.2 exon 11525672 11525787 11525672 ID=MS.gene059285.t1.exon7;Parent=MS.gene059285.t1
chr2.2 CDS 11525672 11525787 11525672 ID=cds.MS.gene059285.t1;Parent=MS.gene059285.t1
chr2.2 exon 11525281 11525428 11525281 ID=MS.gene059285.t1.exon8;Parent=MS.gene059285.t1
chr2.2 CDS 11525281 11525428 11525281 ID=cds.MS.gene059285.t1;Parent=MS.gene059285.t1
chr2.2 exon 11524902 11524971 11524902 ID=MS.gene059285.t1.exon9;Parent=MS.gene059285.t1
chr2.2 CDS 11524902 11524971 11524902 ID=cds.MS.gene059285.t1;Parent=MS.gene059285.t1
chr2.2 exon 11524757 11524794 11524757 ID=MS.gene059285.t1.exon10;Parent=MS.gene059285.t1
chr2.2 CDS 11524757 11524794 11524757 ID=cds.MS.gene059285.t1;Parent=MS.gene059285.t1
Gene Sequence

>MS.gene059285

ATGATAACATCAACAAGGCCCAATAAGTACCAAGTGTTACATCACGTGCAATACGACGAGTATACTGTTGTATGGAGTGCGAAGAAACGAAAGGGATAACAGAACTCGAAAGCTAAGAACAGAATAAACACACGCACGCACACACAAAAACACCACTTTAAGATTGTTTTGTTTTCCCCTAACGTTACGAAACACAACACACACTATATATATAATCTATCAAAGGTTCCAAACCTCTTACGAAATTGTTTTTATTTAATGGTTGATGCGTTTTTAATTGAATGGGAGCTCAAAAGAGCATCCATGCTGGCAAAGGTTACAATTTCATTCAACATTTCATATTAATCTTTCATTTTTCTTTGTTTTACTATTGATGATGATTGTGTTTTTGTTTTTCAGCAAAGATTGATGTTAATGTTGATTTTACTCACAAGCTTTGTACTTATTTGATGCTCAATACCTTCAGGTTTCACCTCTATTCATTTTTCTCAGCTCAATTCAATTTTTTTTATAATAACGGATTATTAATTTGAATTTTTCTTTAACAGGAGTGATGACAATCCTCTTTCACTAGTAATTGGGAGGTAAGATTTTCACTTTGATCAGTAGTGCATTGGATTGTTGGGGGCTATAAAGCGCGGATTTAAACACCAAACACGACACTGATAATAATTTGTCGAAATTAAATAATTGATAATAGCTGCATGTGTCTTTGTCGGACACTGGACGTGTCTTCAATATAAAATATTGGTGCTGCATATGTTGAAGATATTGGTTTTCCCATGATTTTGTAAATGAATGACTGATAAACTTTTTTTTTATTAGTCTTTGTATCAAACATCCAAATTTATTTGGCGGAAGTGAGAAGCTTGATGTTTCATGGGACAAGGGTTTGTATGATTCAAATATTTTAATTGCTTATAGAAGGCCACGGGAAGAATGTCTTGCTCATCAGTCTTTCGTGGTGCAGGTTGGTTTTGCTCGTTTTTTGTTTATGTTTTTGTTTATCATTTTATTTTATGGTATGAGAGGTTCTGCTAGGCAATGGCGATAAATAAACTTTTGTTTCAATGGATTTTTCTGTGGCAATTAGAGGATTTCAAGCAATGTTATTTTAAGACGTCTAATATGTGAAACACACAAATTTGAGTGAAATTTTGTAGTGAAAGCAAGCTATTAAGTTCTACTTGTGATCATTGTTTTCCCCTTTGCAGCATTCTCTTTCACCAGAGATCGGAATCCATGGTATCCCTATAAACAATTTCTCCCGCTCGGGAAGTGGGGGTGTAAATTTATCTAGATTAACAGTTGGGATGGATCTGAAGGAACCTGTGAGTTCAAAGTGGAGCAGCACAACCAGCATAAAATTTGAGGTTCGGATGCGTCTTTTCGTGAATCAAGGATAATATCGGAGACTAGTTTGCATGAGTTTCTTTGATTTTCTTTACATTACTATTTGTTTTGGTTATACACGAAGTAGAAACTAACTCGTTAAACCATCATGCAGCATGTTCGTCCATTGAACGATGATGGTCGCAATATAAGCAGGGATCGTGACGGGTTTGCTTTGACTTGCAGGTAACCAAGGATTTTAGTATTCCGGTTTTCAAAATGTCGAACTGATTTTGATAATGTGATATGTACATTGCTTATTGCAGTGGCAGTCCACATGACAGTATGGTAGTCTTAAAGCAAGAGTCTCAACACACAAAGGCAAACGATCGTAGCTTTTTTCATGTAATGAATTACATTCTTATTTCCAGTTTGATTCCTAGTTCCTATTTATATGGCTATTAACCAATAAGTCGTGTATCTGAATTGTGCATCTATTCCACTAACTGAGCGCACAACCTTTTCAGTTTAATCTTCAAATAGAACAAGGTATTCCTGTTCTTTCTAAGTGGATAATTTTCAACCGATTTAAATTTGTTGCTACGAAAGGAATCAAACTTGGACCAACACTTCTCCTGACAAGGTTGGTAATTTCTGATATTTCAAATACATAATACTTTTCTATTTGACATATTGCAATTAGAGAAACAACAATCTGGAGCTATAAATTAAAATAGAATACATTAATGCTTGGGTTCACTAATAGGACATATTGACACAAACTTAATACTTCGTGAGTCCTAATTTCAACCTGAAATAGAGTTACCCTATTTTCTATGTGATTATATAATTTTCTTATTATAGTCCATGCCTTTTCGTCTGACAGACTTACAGGTGGTTCAATCGTTGGGGACATGGCTCCTTACCAAGCATTTTCCATTGGGGGGCTCGGAAGTGTCCGAGGGTATGGTGAAGGAGCAGTTGGTTCTGGGAGATCATGCCTGGTGGCTAATAGCGAACTGACTCTCCCTTTGGTACGCAATATTTACAAATAACAATCATATAATGAAAATTGCATAAGAGATCATGTCTGACCGTGAATTTTCAGCACATGTTATCTTGATAAATTATGAATTTTAAGGTTATCGTTTCTGTTAAAATTTTCATGATTCACCCTGTGCATGACTGATTTGAAAGCGATCAATTTTGTTGTTGCGAGCCTCCAAAAATGAAAGCAGATGACCACAATTAAACATATACACATTCATCTTTTTAATTTTATTACATTCATCGTCGAATCAAAATGTGCTGTGCTAAATTAACTGATGTCTTTTTCACTACAGACTAAGATGTTGGAAGGTGCGGTTTTTATGGATTGCGGAACAGATTTGCGGACTGGTTATCTTGTACCTGGTGAGTAATATCATTTTGCTCAAGTTACTTTCAACTTTTCTTTATACTATCTATTCATTTGAAATGTTCTTTGTTTATTGCTAACATTTACATCCAACGATTTTTAGCACGGTCAAATATGTTTATGTTTGGTTCTGCTGAGTAA

Protein sequence

>MS.gene059285.t1

MITSTRPNKYQVLHHVQYDESDDNPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNILIAYRRPREECLAHQSFVVQHSLSPEIGIHGIPINNFSRSGSGGVNLSRLTVGMDLKEPVSSKWSSTTSIKFEHVRPLNDDGRNISRDRDGFALTCSGSPHDSMVVLKQESQHTKANDRSFFHFNLQIEQGIPVLSKWIIFNRFKFVATKGIKLGPTLLLTRLTGGSIVGDMAPYQAFSIGGLGSVRGYGEGAVGSGRSCLVANSELTLPLTKMLEGAVFMDCGTDLRTGYLVPARSNMFMFGSAE