AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056979


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056979.t1 MTR_2g099410 96.316 190 7 0 1 190 47 236 1.61e-129 366
MS.gene056979.t1 MTR_2g099410 79.167 48 10 0 191 238 105 152 9.22e-16 74.7
MS.gene056979.t1 MTR_4g064917 34.659 176 103 3 2 174 76 242 5.23e-24 97.1
MS.gene056979.t1 MTR_1g031110 27.160 162 109 2 3 161 36 191 3.08e-18 80.9
MS.gene056979.t1 MTR_3g079890 27.160 162 109 2 3 161 40 195 4.26e-18 80.9
MS.gene056979.t1 MTR_1g068960 34.444 90 59 0 79 168 485 574 4.66e-12 65.5
MS.gene056979.t1 MTR_8g103480 28.947 114 77 2 43 156 49 158 4.01e-11 62.8
MS.gene056979.t1 MTR_7g011500 30.282 142 84 4 78 215 583 713 6.08e-11 62.4
MS.gene056979.t1 MTR_3g114700 29.661 118 82 1 36 153 243 359 6.57e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056979.t1 AT3G46870 34.091 176 104 3 2 174 72 238 3.62e-22 92.0
MS.gene056979.t1 AT3G46870 31.915 188 104 4 2 174 72 250 8.06e-19 83.2
MS.gene056979.t1 AT5G09315 28.571 203 120 4 2 185 54 250 2.78e-18 81.6
MS.gene056979.t1 AT1G62350 27.160 162 109 2 3 161 1 156 9.24e-14 68.2
MS.gene056979.t1 AT1G62350 27.160 162 109 2 3 161 57 212 3.67e-13 67.4
MS.gene056979.t1 AT3G18110 27.717 184 123 3 67 241 743 925 3.29e-12 66.2
MS.gene056979.t1 AT3G04760 29.054 148 98 2 36 180 189 332 6.16e-11 62.4
MS.gene056979.t1 AT2G15630 27.907 172 108 5 79 238 435 602 7.45e-11 62.0

Find 52 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAACTTGAACGCTTTCTT+TGG 0.235310 2.1:-5150104 None:intergenic
ACTTTCTGAACAAATTTATC+AGG 0.290581 2.1:-5152582 None:intergenic
TACAGATCCATGAAGGCTTC+AGG 0.306225 2.1:+5152447 MS.gene056979:CDS
TCATTGAACAACCTCGTATC+TGG 0.321501 2.1:-5152372 None:intergenic
TTCAATCGGGTGGTTGAAAC+TGG 0.331042 2.1:+5153615 MS.gene056979:CDS
CAAACACCCTGAAGCCTTCA+TGG 0.358156 2.1:-5152454 None:intergenic
TGACATTCACTATACTGATT+AGG 0.360015 2.1:+5152487 MS.gene056979:CDS
ATTAGGAATCTAATGAATAA+TGG 0.372286 2.1:+5152504 MS.gene056979:CDS
TTCTGACACTATATTGTTGC+TGG 0.386533 2.1:+5152284 MS.gene056979:CDS
TTCAATCAAGTTGTGGAAAA+GGG 0.393035 2.1:+5152342 MS.gene056979:CDS
GAAGGCTTCAGGGTGTTTGC+CGG 0.397835 2.1:+5152458 MS.gene056979:CDS
GGTTGTTCAATGAGATGATC+GGG 0.409297 2.1:+5152382 MS.gene056979:CDS
GCCAAGACAATTAAAACATC+AGG 0.410998 2.1:-5150205 None:intergenic
GTTCAATCAAGTTGTGGAAA+AGG 0.412536 2.1:+5152341 MS.gene056979:CDS
AGGAAGCTGGGTATGATAAA+TGG 0.414897 2.1:+5152247 MS.gene056979:CDS
TTATTTGCAAGTTGGTAATA+CGG 0.445470 2.1:+5152407 MS.gene056979:CDS
TTCTCAAGTCTAAATTGCTT+AGG 0.453872 2.1:+5150173 MS.gene056979:CDS
GCAATTTAGACTTGAGAACT+TGG 0.462867 2.1:-5150168 None:intergenic
ATTATCAGTGATGAGGAAGC+TGG 0.464498 2.1:+5152234 MS.gene056979:CDS
GAAAACTCACATGTTTCAGC+TGG 0.472944 2.1:-5152605 None:intergenic
ACAGATCCATGAAGGCTTCA+GGG 0.478380 2.1:+5152448 MS.gene056979:CDS
TTCTGACATGATACTGTTGT+TGG 0.482914 2.1:+5153557 MS.gene056979:CDS
AGCAGGATATGATACATTGC+TGG 0.484807 2.1:+5153524 MS.gene056979:CDS
TGGCAGAAGAGATGTTCAAT+CGG 0.498409 2.1:+5153601 MS.gene056979:CDS
ATCGGGGTTTATTTGCAAGT+TGG 0.501108 2.1:+5152399 MS.gene056979:CDS
ATAGTGAATGTCAATGAATC+CGG 0.502047 2.1:-5152477 None:intergenic
GAATAATGGAGAACATGAAC+TGG 0.504471 2.1:+5152518 MS.gene056979:CDS
ATTATTAGTGATGAGGAAGC+AGG 0.523985 2.1:+5153507 MS.gene056979:CDS
CCTTGAGAGATAAATGGAGT+TGG 0.528634 2.1:-5150246 None:intergenic
TCTGACATGATACTGTTGTT+GGG 0.538800 2.1:+5153558 MS.gene056979:CDS
AGAGCTTATTATTAGTGATG+AGG 0.540145 2.1:+5153500 MS.gene056979:CDS
AGGTTGTTCAATGAGATGAT+CGG 0.544532 2.1:+5152381 MS.gene056979:CDS
GGCAGAAGAGATGTTCAATC+GGG 0.546816 2.1:+5153602 MS.gene056979:CDS
TCTGACACTATATTGTTGCT+GGG 0.554494 2.1:+5152285 MS.gene056979:CDS
CCAACTCCATTTATCTCTCA+AGG 0.557133 2.1:+5150246 MS.gene056979:CDS
TGGTAATACGGAGAAGGCGA+TGG 0.560110 2.1:+5152419 MS.gene056979:CDS
CGAGTTTATTATCAGTGATG+AGG 0.571726 2.1:+5152227 MS.gene056979:CDS
GCAAGTTGGTAATACGGAGA+AGG 0.574234 2.1:+5152413 MS.gene056979:CDS
AGAGATGTTCAATCAAGTTG+TGG 0.585094 2.1:+5152335 MS.gene056979:CDS
GGAGGTTTACAGATCCATGA+AGG 0.589588 2.1:+5152440 MS.gene056979:CDS
TCAATCAAGTTGTGGAAAAG+GGG 0.591104 2.1:+5152343 MS.gene056979:CDS
TTATCAGTGATGAGGAAGCT+GGG 0.593218 2.1:+5152235 MS.gene056979:CDS
AAAGAACAAGATGATTGAGA+TGG 0.594568 2.1:+5152308 MS.gene056979:CDS
GAACAAGATGATTGAGATGG+CGG 0.602226 2.1:+5152311 MS.gene056979:CDS
AAGGAACAAGATGATTGAGA+TGG 0.616432 2.1:+5153581 MS.gene056979:CDS
AGAAGAGATGTTCAATCGGG+TGG 0.626222 2.1:+5153605 MS.gene056979:CDS
TAATACGGAGAAGGCGATGG+AGG 0.641911 2.1:+5152422 MS.gene056979:CDS
ACATGATACTGTTGTTGGGA+AGG 0.647551 2.1:+5153562 MS.gene056979:CDS
AATATAGTGTCAGAATACAA+TGG 0.656425 2.1:-5152276 None:intergenic
GTTGTTCAATGAGATGATCG+GGG 0.665655 2.1:+5152383 MS.gene056979:CDS
GGTGGTTGAAACTGGAAACG+AGG 0.718348 2.1:+5153623 MS.gene056979:CDS
AGGGGTTGAAACCAGATACG+AGG 0.767064 2.1:+5152361 MS.gene056979:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTAATAACAATGAGAA+AGG + chr2.1:5153045-5153064 MS.gene056979:intron 15.0%
!! ATATTAATAACAATGAGAAA+GGG + chr2.1:5153046-5153065 MS.gene056979:intron 15.0%
!!! TTTCAATTATATTGATGATT+TGG - chr2.1:5153258-5153277 None:intergenic 15.0%
!! AATAATTTGATCATAGTTGA+CGG + chr2.1:5150925-5150944 MS.gene056979:intron 20.0%
!! ACAATTTGAGAAAATACAAA+TGG - chr2.1:5153342-5153361 None:intergenic 20.0%
!! ATAAGATAATAGTTTGACAT+TGG - chr2.1:5151249-5151268 None:intergenic 20.0%
!! ATTAGGAATCTAATGAATAA+TGG + chr2.1:5152504-5152523 MS.gene056979:CDS 20.0%
!! GCTAGAAAATTATTTCATAT+AGG + chr2.1:5151528-5151547 MS.gene056979:intron 20.0%
!! GCTAGAAAATTATTTCATTT+AGG + chr2.1:5150880-5150899 MS.gene056979:intron 20.0%
!! TAACTTATATGAAAATGAGA+TGG + chr2.1:5150483-5150502 MS.gene056979:intron 20.0%
!! TTCATTATTAATTGAAGCAT+AGG + chr2.1:5153473-5153492 MS.gene056979:intron 20.0%
!!! GATATCATTTTCTATAAGAA+CGG - chr2.1:5150827-5150846 None:intergenic 20.0%
!!! GTATTTTCTCAAATTGTTTT+TGG + chr2.1:5153345-5153364 MS.gene056979:intron 20.0%
!!! TTATGCACTTATTTTATTTG+AGG + chr2.1:5150344-5150363 MS.gene056979:intron 20.0%
! AAATTTGTAGTGTCTTGTAT+GGG + chr2.1:5152675-5152694 MS.gene056979:intron 25.0%
! AACCATTAGAAAAGATTTAG+AGG + chr2.1:5151806-5151825 MS.gene056979:intron 25.0%
! AATAATTTGATCGTAGTTGA+AGG + chr2.1:5151573-5151592 MS.gene056979:intron 25.0%
! AATATAGTGTCAGAATACAA+TGG - chr2.1:5152279-5152298 None:intergenic 25.0%
! ACTGACACTTAAAAGATTAA+AGG + chr2.1:5150974-5150993 MS.gene056979:intron 25.0%
! ACTTTCTGAACAAATTTATC+AGG - chr2.1:5152585-5152604 None:intergenic 25.0%
! AGTACAAATGATCTTATCAA+CGG - chr2.1:5153016-5153035 None:intergenic 25.0%
! CAACAAGCATAAAAGTAATT+TGG - chr2.1:5152887-5152906 None:intergenic 25.0%
! CAGTACTACTTAATACTTAT+AGG - chr2.1:5150958-5150977 None:intergenic 25.0%
! CTTAAAAGATTAAAGGTCTT+AGG + chr2.1:5150981-5151000 MS.gene056979:intron 25.0%
! GAAAGAGTAGTTAGAATTAT+TGG - chr2.1:5152156-5152175 None:intergenic 25.0%
! GATTAAAGGTCTTAAGAATT+AGG + chr2.1:5151979-5151998 MS.gene056979:intron 25.0%
! TAAATTTGTAGTGTCTTGTA+TGG + chr2.1:5152674-5152693 MS.gene056979:intron 25.0%
! TTTCCTTATTGCGAAAATAA+TGG + chr2.1:5153106-5153125 MS.gene056979:intron 25.0%
!! ATGTGAGTTTTCAAATTGTA+TGG + chr2.1:5152616-5152635 MS.gene056979:intron 25.0%
!! GGATTTGATAATTGTAACAT+AGG + chr2.1:5152200-5152219 MS.gene056979:intron 25.0%
!! GTTTCTCTAATAGTTTTCTT+AGG - chr2.1:5151789-5151808 None:intergenic 25.0%
!! TTCATTTTCATCATTTCTAC+TGG + chr2.1:5152816-5152835 MS.gene056979:intron 25.0%
!! TTTTTACCTTGAGAGATAAA+TGG - chr2.1:5150255-5150274 None:intergenic 25.0%
!!! AGTTTGATATTGACTTTGTT+TGG - chr2.1:5150591-5150610 None:intergenic 25.0%
!!! ATATTGACTTTGTTTGGAAT+TGG - chr2.1:5150585-5150604 None:intergenic 25.0%
!!! CAAATTACTTTTATGCTTGT+TGG + chr2.1:5152885-5152904 MS.gene056979:intron 25.0%
!!! GCTTTTTTCATAAGTTATTC+TGG + chr2.1:5150630-5150649 MS.gene056979:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr2.1:5151664-5151683 MS.gene056979:intron 25.0%
!!! TTATTTGCAAGTTGGTAATA+CGG + chr2.1:5152407-5152426 MS.gene056979:CDS 25.0%
!!! TTGTTTCTAATAAGCTATCT+AGG + chr2.1:5150435-5150454 MS.gene056979:intron 25.0%
AAAAAATAGTCAGTCACTAG+TGG - chr2.1:5150789-5150808 None:intergenic 30.0%
AAAGAACAAGATGATTGAGA+TGG + chr2.1:5152308-5152327 MS.gene056979:CDS 30.0%
AATAACTTGAACGCTTTCTT+TGG - chr2.1:5150107-5150126 None:intergenic 30.0%
AATAAGCTGAAAACTACTCA+CGG + chr2.1:5150665-5150684 MS.gene056979:intron 30.0%
ACAAGTTGCAAACAACTTAT+AGG - chr2.1:5150419-5150438 None:intergenic 30.0%
AGAGCTTATTATTAGTGATG+AGG + chr2.1:5153500-5153519 MS.gene056979:CDS 30.0%
AGCATCACTAGTATATAGAT+TGG - chr2.1:5152990-5153009 None:intergenic 30.0%
ATAGTGAATGTCAATGAATC+CGG - chr2.1:5152480-5152499 None:intergenic 30.0%
ATCACAATTAAAACCCTGTT+TGG + chr2.1:5150274-5150293 MS.gene056979:intron 30.0%
ATTAAAACCCTGTTTGGTTA+AGG + chr2.1:5150280-5150299 MS.gene056979:intron 30.0%
ATTAAAGGTCTTAGGATTGA+AGG + chr2.1:5150989-5151008 MS.gene056979:intron 30.0%
CAACAGAACTTCTAATTAGT+TGG - chr2.1:5151497-5151516 None:intergenic 30.0%
CAAGTACATCACAAACTATA+AGG - chr2.1:5152654-5152673 None:intergenic 30.0%
CTAATTAGGGTTGTTTGAAT+TGG - chr2.1:5151416-5151435 None:intergenic 30.0%
GAAGGATATTAACCTATATG+TGG + chr2.1:5151941-5151960 MS.gene056979:intron 30.0%
GAGAAAATACAAATGGTTGA+AGG - chr2.1:5153335-5153354 None:intergenic 30.0%
GTCTTAAGAATTAGGATTGA+AGG + chr2.1:5151987-5152006 MS.gene056979:intron 30.0%
GTTCTATCAAAGACCATATT+TGG - chr2.1:5151846-5151865 None:intergenic 30.0%
TACATCAATACAACCGAAAT+TGG - chr2.1:5152920-5152939 None:intergenic 30.0%
TATCTAATTTCCTGCATTGA+TGG + chr2.1:5152776-5152795 MS.gene056979:intron 30.0%
TCTTTGATAGAACATTATGG+CGG + chr2.1:5151853-5151872 MS.gene056979:intron 30.0%
TGGTCTTTGATAGAACATTA+TGG + chr2.1:5151850-5151869 MS.gene056979:intron 30.0%
TTCTAATAAGCTATCTAGGA+CGG + chr2.1:5150439-5150458 MS.gene056979:intron 30.0%
TTCTCAAGTCTAAATTGCTT+AGG + chr2.1:5150173-5150192 MS.gene056979:CDS 30.0%
! AACTTGGTTGAGTTTTTCTT+CGG - chr2.1:5150155-5150174 None:intergenic 30.0%
! ACACCATTATTTTCGCAATA+AGG - chr2.1:5153112-5153131 None:intergenic 30.0%
! ACCTTTAATCTTTCAAGTGT+CGG - chr2.1:5151969-5151988 None:intergenic 30.0%
! AGTTAGTCACTAGTCTAATT+AGG - chr2.1:5151430-5151449 None:intergenic 30.0%
! ATCTAATTTCCTGCATTGAT+GGG + chr2.1:5152777-5152796 MS.gene056979:intron 30.0%
! ATTTTCATCATTTCTACTGG+AGG + chr2.1:5152819-5152838 MS.gene056979:intron 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - chr2.1:5151811-5151830 None:intergenic 30.0%
! GTTAGTCACTAGTCTAATTA+GGG - chr2.1:5151429-5151448 None:intergenic 30.0%
! TAGTTAGAATTATTGGCTAC+TGG - chr2.1:5152149-5152168 None:intergenic 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr2.1:5151660-5151679 None:intergenic 30.0%
! TGACATTCACTATACTGATT+AGG + chr2.1:5152487-5152506 MS.gene056979:CDS 30.0%
! TTCAATCAAGTTGTGGAAAA+GGG + chr2.1:5152342-5152361 MS.gene056979:CDS 30.0%
!! ATTACTTTTATGCTTGTTGG+CGG + chr2.1:5152888-5152907 MS.gene056979:intron 30.0%
!! TAATGGTGTAGAATTTTAGC+TGG + chr2.1:5153123-5153142 MS.gene056979:intron 30.0%
AAAAAAGAGACACGTCAATC+TGG + chr2.1:5152752-5152771 MS.gene056979:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG + chr2.1:5151734-5151753 MS.gene056979:intron 35.0%
AAGGAACAAGATGATTGAGA+TGG + chr2.1:5153581-5153600 MS.gene056979:CDS 35.0%
ACAGACATAGAAATGATCGA+AGG - chr2.1:5151051-5151070 None:intergenic 35.0%
ACCGACACTTGAAAGATTAA+AGG + chr2.1:5151965-5151984 MS.gene056979:intron 35.0%
AGACTAGACATGATAGGATT+AGG + chr2.1:5151601-5151620 MS.gene056979:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr2.1:5151818-5151837 MS.gene056979:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr2.1:5151653-5151672 MS.gene056979:intron 35.0%
AGGTTGTTCAATGAGATGAT+CGG + chr2.1:5152381-5152400 MS.gene056979:CDS 35.0%
ATGTAGTGTGTGAATGTGAT+AGG + chr2.1:5152935-5152954 MS.gene056979:intron 35.0%
ATTATTAGTGATGAGGAAGC+AGG + chr2.1:5153507-5153526 MS.gene056979:CDS 35.0%
CAGCAGAACTTCTAATTAGT+TGG - chr2.1:5150849-5150868 None:intergenic 35.0%
CATAACCCATCCTAGTTAAT+TGG - chr2.1:5151119-5151138 None:intergenic 35.0%
CGAGTTTATTATCAGTGATG+AGG + chr2.1:5152227-5152246 MS.gene056979:CDS 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr2.1:5151678-5151697 MS.gene056979:intron 35.0%
GAAATTGTAGCTCAAATGTC+TGG - chr2.1:5152865-5152884 None:intergenic 35.0%
GATGTAAGACTAGACATGAT+AGG + chr2.1:5151595-5151614 MS.gene056979:intron 35.0%
GCAATTTAGACTTGAGAACT+TGG - chr2.1:5150171-5150190 None:intergenic 35.0%
GCCAAGACAATTAAAACATC+AGG - chr2.1:5150208-5150227 None:intergenic 35.0%
GCTTAAACCTTAACCAAACA+GGG - chr2.1:5150290-5150309 None:intergenic 35.0%
GGTAAGAAGAGTAGATCAAA+TGG + chr2.1:5151731-5151750 MS.gene056979:intron 35.0%
TATTACCGGTGTTTATGTGT+GGG + chr2.1:5152051-5152070 MS.gene056979:intron 35.0%
TCTGACACTATATTGTTGCT+GGG + chr2.1:5152285-5152304 MS.gene056979:CDS 35.0%
TCTGACATGATACTGTTGTT+GGG + chr2.1:5153558-5153577 MS.gene056979:CDS 35.0%
TGAATGTGATAGGTACTAAC+TGG + chr2.1:5152945-5152964 MS.gene056979:intron 35.0%
TGCTTAAACCTTAACCAAAC+AGG - chr2.1:5150291-5150310 None:intergenic 35.0%
TGCTTCCAATTAACTAGGAT+GGG + chr2.1:5151111-5151130 MS.gene056979:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr2.1:5151673-5151692 MS.gene056979:intron 35.0%
TTCTGACACTATATTGTTGC+TGG + chr2.1:5152284-5152303 MS.gene056979:CDS 35.0%
TTCTGACATGATACTGTTGT+TGG + chr2.1:5153557-5153576 MS.gene056979:CDS 35.0%
TTGATCTACTCTTCTTACCA+CGG - chr2.1:5151730-5151749 None:intergenic 35.0%
TTGCTTCCAATTAACTAGGA+TGG + chr2.1:5151110-5151129 MS.gene056979:intron 35.0%
! AAGCAGTCACAAAGTATTAC+CGG + chr2.1:5152037-5152056 MS.gene056979:intron 35.0%
! AGAGATGTTCAATCAAGTTG+TGG + chr2.1:5152335-5152354 MS.gene056979:CDS 35.0%
! ATTAGGATTGAAGGTGTGTT+TGG + chr2.1:5151996-5152015 MS.gene056979:intron 35.0%
! CAACTTGCTTCCAATTAACT+AGG + chr2.1:5151106-5151125 MS.gene056979:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr2.1:5151830-5151849 MS.gene056979:intron 35.0%
! GAATAATGGAGAACATGAAC+TGG + chr2.1:5152518-5152537 MS.gene056979:CDS 35.0%
! GTTCAATCAAGTTGTGGAAA+AGG + chr2.1:5152341-5152360 MS.gene056979:CDS 35.0%
! GTTGTTGTTGTTGTAGTTGA+AGG + chr2.1:5151923-5151942 MS.gene056979:intron 35.0%
! TCAATCAAGTTGTGGAAAAG+GGG + chr2.1:5152343-5152362 MS.gene056979:CDS 35.0%
! TCTAATTTCCTGCATTGATG+GGG + chr2.1:5152778-5152797 MS.gene056979:intron 35.0%
!! CAATTAACTAGGATGGGTTA+TGG + chr2.1:5151117-5151136 MS.gene056979:intron 35.0%
!!! AGATTGACGTGTCTCTTTTT+TGG - chr2.1:5152753-5152772 None:intergenic 35.0%
!!! GCCTGATGTTTTAATTGTCT+TGG + chr2.1:5150204-5150223 MS.gene056979:CDS 35.0%
AACTGCAAATGTACACAGAC+AGG - chr2.1:5153186-5153205 None:intergenic 40.0%
ACATCATTAGAGAGAGAGTG+GGG + chr2.1:5151628-5151647 MS.gene056979:intron 40.0%
ACATGATACTGTTGTTGGGA+AGG + chr2.1:5153562-5153581 MS.gene056979:CDS 40.0%
AGCAGGATATGATACATTGC+TGG + chr2.1:5153524-5153543 MS.gene056979:CDS 40.0%
AGGAAGCTGGGTATGATAAA+TGG + chr2.1:5152247-5152266 MS.gene056979:CDS 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr2.1:5151759-5151778 MS.gene056979:intron 40.0%
AGTCAGTCACTAGTGGAATT+AGG - chr2.1:5150782-5150801 None:intergenic 40.0%
ATCGGGGTTTATTTGCAAGT+TGG + chr2.1:5152399-5152418 MS.gene056979:CDS 40.0%
ATTATCAGTGATGAGGAAGC+TGG + chr2.1:5152234-5152253 MS.gene056979:CDS 40.0%
CCAACTCCATTTATCTCTCA+AGG + chr2.1:5150246-5150265 MS.gene056979:CDS 40.0%
CCTTGAGAGATAAATGGAGT+TGG - chr2.1:5150249-5150268 None:intergenic 40.0%
GAAAACTCACATGTTTCAGC+TGG - chr2.1:5152608-5152627 None:intergenic 40.0%
GAACAAGATGATTGAGATGG+CGG + chr2.1:5152311-5152330 MS.gene056979:CDS 40.0%
GACATCATTAGAGAGAGAGT+GGG + chr2.1:5151627-5151646 MS.gene056979:intron 40.0%
GGTTGTTCAATGAGATGATC+GGG + chr2.1:5152382-5152401 MS.gene056979:CDS 40.0%
GTATTACCGGTGTTTATGTG+TGG + chr2.1:5152050-5152069 MS.gene056979:intron 40.0%
GTCAGTCACTAGTGGAATTA+GGG - chr2.1:5150781-5150800 None:intergenic 40.0%
GTCTTGTATGGGAAGAGTAA+TGG + chr2.1:5152686-5152705 MS.gene056979:intron 40.0%
GTTGTTCAATGAGATGATCG+GGG + chr2.1:5152383-5152402 MS.gene056979:CDS 40.0%
TCATTGAACAACCTCGTATC+TGG - chr2.1:5152375-5152394 None:intergenic 40.0%
TGACATCATTAGAGAGAGAG+TGG + chr2.1:5151626-5151645 MS.gene056979:intron 40.0%
TGATACCCACACATAAACAC+CGG - chr2.1:5152059-5152078 None:intergenic 40.0%
TGGCAGAAGAGATGTTCAAT+CGG + chr2.1:5153601-5153620 MS.gene056979:CDS 40.0%
TTATCAGTGATGAGGAAGCT+GGG + chr2.1:5152235-5152254 MS.gene056979:CDS 40.0%
! AACTGGCATGGTTAGTTAGT+TGG + chr2.1:5152962-5152981 MS.gene056979:intron 40.0%
! CTTAGGATTGAAGGTGTGTT+TGG + chr2.1:5150998-5151017 MS.gene056979:intron 40.0%
! GACTTAGAGTGATTAGCTAC+TGG - chr2.1:5153442-5153461 None:intergenic 40.0%
! GTGAAGCATTAACACATACC+TGG - chr2.1:5153400-5153419 None:intergenic 40.0%
! TTATGTGCCGATATGGTGTA+TGG + chr2.1:5153371-5153390 MS.gene056979:intron 40.0%
! TTGGTGTTTATGTGCCGATA+TGG + chr2.1:5153364-5153383 MS.gene056979:intron 40.0%
AAATGTCTCCTAACTCCCAC+TGG + chr2.1:5153281-5153300 MS.gene056979:intron 45.0%
AAGTAGAACCCCATCAATGC+AGG - chr2.1:5152789-5152808 None:intergenic 45.0%
ACAGATCCATGAAGGCTTCA+GGG + chr2.1:5152448-5152467 MS.gene056979:CDS 45.0%
AGAAGAGATGTTCAATCGGG+TGG + chr2.1:5153605-5153624 MS.gene056979:CDS 45.0%
AGATCAAATGGAGGAGAGTC+AGG + chr2.1:5151743-5151762 MS.gene056979:intron 45.0%
CATCATTAGAGAGAGAGTGG+GGG + chr2.1:5151629-5151648 MS.gene056979:intron 45.0%
CTGGACACCATACACCATAT+CGG - chr2.1:5153381-5153400 None:intergenic 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + chr2.1:5151753-5151772 MS.gene056979:intron 45.0%
GGAGGTTTACAGATCCATGA+AGG + chr2.1:5152440-5152459 MS.gene056979:CDS 45.0%
GGCAGAAGAGATGTTCAATC+GGG + chr2.1:5153602-5153621 MS.gene056979:CDS 45.0%
GTGATAGGTACTAACTGGCA+TGG + chr2.1:5152950-5152969 MS.gene056979:intron 45.0%
TACAGATCCATGAAGGCTTC+AGG + chr2.1:5152447-5152466 MS.gene056979:CDS 45.0%
TACTGGAGGAGATTCACACT+GGG + chr2.1:5152833-5152852 MS.gene056979:intron 45.0%
TGTCTTCGTCAAACACCAGT+GGG - chr2.1:5153299-5153318 None:intergenic 45.0%
TTCAATCGGGTGGTTGAAAC+TGG + chr2.1:5153615-5153634 MS.gene056979:CDS 45.0%
!! CAAGTGTCGGTACCACATAT+AGG - chr2.1:5151956-5151975 None:intergenic 45.0%
!! GCAAGTTGGTAATACGGAGA+AGG + chr2.1:5152413-5152432 MS.gene056979:CDS 45.0%
!!! TTATTTTTTCATTTTAATTT+TGG + chr2.1:5152179-5152198 MS.gene056979:intron 5.0%
ACCGCCTTATCCCACTAAGT+GGG - chr2.1:5151900-5151919 None:intergenic 50.0%
AGGGGTTGAAACCAGATACG+AGG + chr2.1:5152361-5152380 MS.gene056979:CDS 50.0%
CAAACACCCTGAAGCCTTCA+TGG - chr2.1:5152457-5152476 None:intergenic 50.0%
CGATATGGTGTATGGTGTCC+AGG + chr2.1:5153379-5153398 MS.gene056979:intron 50.0%
CTACTGGAGGAGATTCACAC+TGG + chr2.1:5152832-5152851 MS.gene056979:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr2.1:5151895-5151914 None:intergenic 50.0%
GGTGGTTGAAACTGGAAACG+AGG + chr2.1:5153623-5153642 MS.gene056979:CDS 50.0%
GTCAAACACCAGTGGGAGTT+AGG - chr2.1:5153292-5153311 None:intergenic 50.0%
GTGTCTTCGTCAAACACCAG+TGG - chr2.1:5153300-5153319 None:intergenic 50.0%
TAATACGGAGAAGGCGATGG+AGG + chr2.1:5152422-5152441 MS.gene056979:CDS 50.0%
TCTTCTTACCACGGCGTCTA+CGG - chr2.1:5151721-5151740 None:intergenic 50.0%
TGGTAATACGGAGAAGGCGA+TGG + chr2.1:5152419-5152438 MS.gene056979:CDS 50.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr2.1:5151887-5151906 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr2.1:5151886-5151905 MS.gene056979:intron 55.0%
CACCGCCTTATCCCACTAAG+TGG - chr2.1:5151901-5151920 None:intergenic 55.0%
CCCCACTTAGTGGGATAAGG+CGG + chr2.1:5151896-5151915 MS.gene056979:intron 55.0%
CCGCCTTATCCCACTAAGTG+GGG - chr2.1:5151899-5151918 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr2.1:5151893-5151912 MS.gene056979:intron 55.0%
CTTCTTACCACGGCGTCTAC+GGG - chr2.1:5151720-5151739 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr2.1:5151887-5151906 MS.gene056979:intron 55.0%
TTGGCGGCGACTGCCAATTT+CGG + chr2.1:5152904-5152923 MS.gene056979:intron 55.0%
! GAAGGCTTCAGGGTGTTTGC+CGG + chr2.1:5152458-5152477 MS.gene056979:CDS 55.0%
GAGAAGACCCGTAGACGCCG+TGG + chr2.1:5151710-5151729 MS.gene056979:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 5150094 5153656 5150094 ID=MS.gene056979
chr2.1 mRNA 5150094 5153656 5150094 ID=MS.gene056979.t1;Parent=MS.gene056979
chr2.1 exon 5150094 5150267 5150094 ID=MS.gene056979.t1.exon1;Parent=MS.gene056979.t1
chr2.1 CDS 5150094 5150267 5150094 ID=cds.MS.gene056979.t1;Parent=MS.gene056979.t1
chr2.1 exon 5152222 5152617 5152222 ID=MS.gene056979.t1.exon2;Parent=MS.gene056979.t1
chr2.1 CDS 5152222 5152617 5152222 ID=cds.MS.gene056979.t1;Parent=MS.gene056979.t1
chr2.1 exon 5153495 5153656 5153495 ID=MS.gene056979.t1.exon3;Parent=MS.gene056979.t1
chr2.1 CDS 5153495 5153656 5153495 ID=cds.MS.gene056979.t1;Parent=MS.gene056979.t1
Gene Sequence

>MS.gene056979

ATGGTAATTTCCAAAGAAAGCGTTCAAGTTATTCACGCTCTCAAACTCGCTAAAAATTCCGAAGAAAAACTCAACCAAGTTCTCAAGTCTAAATTGCTTAGGTTATTGAAGCCTGATGTTTTAATTGTCTTGGCTGAATTGCATAGACAAAACCAACTCCATTTATCTCTCAAGGTAAAAATCACAATTAAAACCCTGTTTGGTTAAGGTTTAAGCACTTATTGCATAAGTGATTATCATGTACATGTTATTATGCACTTATTTTATTTGAGGTTATTTACTAATATAATTTGAGAGAGCTTATAAAAATACTTATGATATGCCTATAAGTTGTTTGCAACTTGTTTCTAATAAGCTATCTAGGACGGCTTATGAAAACAAACAACTTATAACTTATATGAAAATGAGATGGCTTTATTTTATCTTTTGATAGATAAATATCTTATTGATGAGAAATTATATGACTAACACTTAATCAAGTTGTTTATCCAATTCCAAACAAAGTCAATATCAAACTATTATCTTATTAGCTATAAGCTTTTTTCATAAGTTATTCTGGAGAACATGTGAAAATAAGCTGAAAACTACTCACGGACATGTCAAAAACTGTTTTCTCTAGTTTTTTTCAAGCAGTCTAAGAAGTTTCTGTGCTAATAGAGAGACTCAAATAATTCAATTCAAACACCCTAATTCCACTAGTGACTGACTATTTTTTGTGCGTCTAAATTCTCCGTTCTTATAGAAAATGATATCCAACTAATTAGAAGTTCTGCTGATAGTTAAGTTGCTAGAAAATTATTTCATTTAGGTATCAAACTCATATTCAACTTTAATAATTTGATCATAGTTGACGGATATTAACCTATAAGTATTAAGTAGTACTGACACTTAAAAGATTAAAGGTCTTAGGATTGAAGGTGTGTTTGGTGTCACATGACACAACATAAGCAGTCACCTTCGATCATTTCTATGTCTGTTGTCAATGTATCTGTCAATGCTTTACATGCATTAACAACTTGCTTCCAATTAACTAGGATGGGTTATGGAAACAACTTATAGCTTATATGAAAATGATATGACTTTATTTTATCTTTTGATATATAAATATCTTATACATAAGAAGTTATATGATAAGTGTTTATCAAAACAGAGCCAATGTCAAACTATTATCTTATAAGCTATAAGCTGTTTTCATAAGCTATTCATGATAACATGTGAAATTAAGCTGAAAACAACTTACACACATGTCATTAATTGTTTTCACAAGTTTTTTCAGATAATCTCACAATTGTTTGTGCTAATAGTGAAATTCAAATAAGCCAATTCAAACAACCCTAATTAGACTAGTGACTAACTATGTTTTGTGTGTCTAAGTTCTCTGTTCTTATAGAAAATGATATCCAACTAATTAGAAGTTCTGTTGATAGTTAAGTTGCTAGAAAATTATTTCATATAGGTATCAAACTCATATACTAATTTAATAATTTGATCGTAGTTGAAGGATGTAAGACTAGACATGATAGGATTAGGAATGACATCATTAGAGAGAGAGTGGGGGTAGCACCTATAGTAGAAAAGTTGGTAGAAAATAGGCTTAGATGGTTTGGACATGTAGAGAGAAGACCCGTAGACGCCGTGGTAAGAAGAGTAGATCAAATGGAGGAGAGTCAGGTTAAAAGAGGTAGAGGAAGACCTAAGAAAACTATTAGAGAAACCATTAGAAAAGATTTAGAGGTCAATGAGTTGGATCCAAATATGGTCTTTGATAGAACATTATGGCGGCATTTGATCCATGTAGCCGACCCCACTTAGTGGGATAAGGCGGTGTTGTTGTTGTTGTTGTAGTTGAAGGATATTAACCTATATGTGGTACCGACACTTGAAAGATTAAAGGTCTTAAGAATTAGGATTGAAGGTGTGTTTGGTGTCACATGACACAACATAAGCAGTCACAAAGTATTACCGGTGTTTATGTGTGGGTATCATGTCTGTTGTCAATGTATGTGTCAATGCTTTACATGCATTAACAACTTGCTTCTAATCAGTTAGTTACCAGTAGCCAATAATTCTAACTACTCTTTCTCATTATTTTTTCATTTTAATTTTGGATTTGATAATTGTAACATAGGTTTTCGAGTTTATTATCAGTGATGAGGAAGCTGGGTATGATAAATGGCTGCTGCCATTGTATTCTGACACTATATTGTTGCTGGGAAAGAACAAGATGATTGAGATGGCGGAAGAGATGTTCAATCAAGTTGTGGAAAAGGGGTTGAAACCAGATACGAGGTTGTTCAATGAGATGATCGGGGTTTATTTGCAAGTTGGTAATACGGAGAAGGCGATGGAGGTTTACAGATCCATGAAGGCTTCAGGGTGTTTGCCGGATTCATTGACATTCACTATACTGATTAGGAATCTAATGAATAATGGAGAACATGAACTGGTTGAAACTTTGAAAAAAGAGAGTTTTGACTATGTCAATAAACCTGATAAATTTGTTCAGAAAGTCCAGCTGAAACATGTGAGTTTTCAAATTGTATGGTGTTATGTTATACCTTATAGTTTGTGATGTACTTGTAAATTTGTAGTGTCTTGTATGGGAAGAGTAATGGAATTAGCTAATTTTGTAAATTTGTTTTTCTGTTTGTTTCAGCCAAAAAAGAGACACGTCAATCTGGTTATCTAATTTCCTGCATTGATGGGGTTCTACTTATACTGTTTCATTTTCATCATTTCTACTGGAGGAGATTCACACTGGGAGCATTCCAGACATTTGAGCTACAATTTCCAAATTACTTTTATGCTTGTTGGCGGCGACTGCCAATTTCGGTTGTATTGATGTAGTGTGTGAATGTGATAGGTACTAACTGGCATGGTTAGTTAGTTGGTTCCAATCTATATACTAGTGATGCTGCACCGTTGATAAGATCATTTGTACTTTTGAAATGAATATTAATAACAATGAGAAAGGGTTGTTGCAGCTCAAGTTATTCTGTTTACGATACGCTCTTTCCTTATTGCGAAAATAATGGTGTAGAATTTTAGCTGGTAGCATTCAGAATAAAAGTGCTGCACTTGTAAAAATACCTGTCTGTGTACATTTGCAGTTTTAAATCAACTAAGCAAAGCATCGTTGACACAAAATAATACAAGACAATCCAAATCATCAATATAATTGAAAATTAAATGTCTCCTAACTCCCACTGGTGTTTGACGAAGACACATGCATCAGTTACCTTCAACCATTTGTATTTTCTCAAATTGTTTTTGGTGTTTATGTGCCGATATGGTGTATGGTGTCCAGGTATGTGTTAATGCTTCACGTGCATTAACAACTCACTTCCAGTAGCTAATCACTCTAAGTCTCTTACTACTCTTCATTATTAATTGAAGCATAGGTTTTAGAGCTTATTATTAGTGATGAGGAAGCAGGATATGATACATTGCTGGAACAGTTGTATTCTGACATGATACTGTTGTTGGGAAGGAACAAGATGATTGAGATGGCAGAAGAGATGTTCAATCGGGTGGTTGAAACTGGAAACGAGGTTGTTAAATGA

Protein sequence

>MS.gene056979.t1

MVISKESVQVIHALKLAKNSEEKLNQVLKSKLLRLLKPDVLIVLAELHRQNQLHLSLKVFEFIISDEEAGYDKWLLPLYSDTILLLGKNKMIEMAEEMFNQVVEKGLKPDTRLFNEMIGVYLQVGNTEKAMEVYRSMKASGCLPDSLTFTILIRNLMNNGEHELVETLKKESFDYVNKPDKFVQKVQLKHVLELIISDEEAGYDTLLEQLYSDMILLLGRNKMIEMAEEMFNRVVETGNEVVK