Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068062.t1 | XP_027188568.1 | 93.8 | 48 | 3 | 0 | 84 | 131 | 421 | 468 | 5.60E-16 | 94 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068062.t1 | Q9S7R7 | 59.6 | 47 | 19 | 0 | 84 | 130 | 413 | 459 | 1.0e-10 | 67.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068062.t1 | Q2HUH9 | 93.8 | 48 | 3 | 0 | 84 | 131 | 431 | 478 | 4.1e-16 | 94.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene068062 | 0.809168 | 2.16E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene068062 | 0.806098 | 9.70E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene068062 | 0.801292 | 9.65E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene068062 | 0.846623 | 1.93E-59 | -1.69E-46 |
| MS.gene058010 | MS.gene068062 | 0.808011 | 3.82E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068062.t1 | MTR_7g088170 | 93.750 | 48 | 3 | 0 | 84 | 131 | 431 | 478 | 1.27e-23 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068062.t1 | AT3G09030 | 59.574 | 47 | 19 | 0 | 84 | 130 | 413 | 459 | 2.41e-13 | 65.9 |
Find 34 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTGGCACTTCAGCCTTC+AGG | 0.328533 | 7.2:-20549897 | MS.gene068062:intron |
| GCAGCTTGTGCCAAGTCCTT+TGG | 0.350401 | 7.2:-20549913 | MS.gene068062:CDS |
| AAGAGAGAGGATTCGGAGAA+AGG | 0.354671 | 7.2:-20547695 | MS.gene068062:CDS |
| TGAAACTGTAGTATAGTATA+TGG | 0.390275 | 7.2:+20549229 | None:intergenic |
| ATCTCTATCCGTCAGTGCTC+TGG | 0.405787 | 7.2:-20549252 | MS.gene068062:CDS |
| GGCTGAAGTGCCAAAGGACT+TGG | 0.420272 | 7.2:+20549903 | None:intergenic |
| GATTGATAAGAGAGAGGATT+CGG | 0.430714 | 7.2:-20547702 | MS.gene068062:CDS |
| CAGAAATAGCTCCAGCAGAA+TGG | 0.442903 | 7.2:+20547588 | None:intergenic |
| ATTAGTAGAGAAGATGTTGA+AGG | 0.454575 | 7.2:-20547632 | MS.gene068062:CDS |
| TGGGAGAGTTCCCATTCTGC+TGG | 0.459361 | 7.2:-20547599 | MS.gene068062:CDS |
| GTAGAGGTACTCACCATTAG+AGG | 0.466958 | 7.2:+20549612 | None:intergenic |
| AGAAATAGCTCCAGCAGAAT+GGG | 0.470217 | 7.2:+20547589 | None:intergenic |
| AGATTGAAGGTGGTGGGGAT+AGG | 0.487714 | 7.2:-20547661 | MS.gene068062:CDS |
| ATGCAACTGCCTTGTCCTCA+AGG | 0.507115 | 7.2:-20549685 | MS.gene068062:CDS |
| TAATCTCTGCCTTGAGGACA+AGG | 0.507133 | 7.2:+20549676 | None:intergenic |
| ATGGTAGGTCGAAACAATCA+AGG | 0.515144 | 7.2:+20549643 | None:intergenic |
| GGTGTGATTGTGAAGATTGA+AGG | 0.540174 | 7.2:-20547674 | MS.gene068062:CDS |
| TTGTGAAGATTGAAGGTGGT+GGG | 0.552627 | 7.2:-20547667 | MS.gene068062:CDS |
| ATGTTGAAGGTATTGAAGTG+TGG | 0.557746 | 7.2:-20547619 | MS.gene068062:CDS |
| CGCATACCAGCCAGTAGTAG+AGG | 0.558042 | 7.2:+20549596 | None:intergenic |
| ATGGTGAGTACCTCTACTAC+TGG | 0.562774 | 7.2:-20549606 | MS.gene068062:CDS |
| TGTTGAAGGTATTGAAGTGT+GGG | 0.569419 | 7.2:-20547618 | MS.gene068062:CDS |
| CCTGAAGGCTGAAGTGCCAA+AGG | 0.598117 | 7.2:+20549897 | None:intergenic |
| AGGACAAGGCAGTTGCATGA+AGG | 0.599630 | 7.2:+20549690 | None:intergenic |
| TGAGTACCTCTACTACTGGC+TGG | 0.601061 | 7.2:-20549602 | MS.gene068062:intron |
| GTATATGGCCAGAGCACTGA+CGG | 0.611944 | 7.2:+20549244 | None:intergenic |
| ATTGTGAAGATTGAAGGTGG+TGG | 0.612064 | 7.2:-20547668 | MS.gene068062:CDS |
| TGGTAGGTCGAAACAATCAA+GGG | 0.614022 | 7.2:+20549644 | None:intergenic |
| ACTTGTTAATCTCTGCCTTG+AGG | 0.614780 | 7.2:+20549670 | None:intergenic |
| CTGAAAGATTGATAAGAGAG+AGG | 0.624915 | 7.2:-20547708 | MS.gene068062:intron |
| TGTGAAGATTGAAGGTGGTG+GGG | 0.625301 | 7.2:-20547666 | MS.gene068062:CDS |
| AGCACTGACGGATAGAGATG+AGG | 0.667718 | 7.2:+20549256 | None:intergenic |
| GTGATTGTGAAGATTGAAGG+TGG | 0.690621 | 7.2:-20547671 | MS.gene068062:CDS |
| GGTAGGTCGAAACAATCAAG+GGG | 0.700419 | 7.2:+20549645 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAAAAAAAAAAAATTT+GGG | - | chr7.2:20548718-20548737 | MS.gene068062:intron | 0.0% |
| !!! | CATTTTGTTATATATATTAT+TGG | + | chr7.2:20549711-20549730 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTAATTACAGATA+GGG | + | chr7.2:20548712-20548731 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTAATTACAGAT+AGG | + | chr7.2:20548713-20548732 | None:intergenic | 10.0% |
| !! | ATATAACAAAATGTTTATGA+AGG | - | chr7.2:20549718-20549737 | MS.gene068062:CDS | 15.0% |
| !! | TATAAATATACACATATACA+AGG | + | chr7.2:20549618-20549637 | None:intergenic | 15.0% |
| !! | AATGTCTAAATATAAGATGA+AGG | - | chr7.2:20549531-20549550 | MS.gene068062:intron | 20.0% |
| !! | TACATGAAACAATTTGAAAA+GGG | - | chr7.2:20548026-20548045 | MS.gene068062:intron | 20.0% |
| !! | TCAAATTGTTTCATGTAAAA+GGG | + | chr7.2:20548023-20548042 | None:intergenic | 20.0% |
| !! | TTACATGAAACAATTTGAAA+AGG | - | chr7.2:20548025-20548044 | MS.gene068062:intron | 20.0% |
| !! | TTCAAATTGTTTCATGTAAA+AGG | + | chr7.2:20548024-20548043 | None:intergenic | 20.0% |
| !!! | AACAATTTTCTAACTTCATT+GGG | - | chr7.2:20549054-20549073 | MS.gene068062:intron | 20.0% |
| !!! | TTTTTTACATAGTATGTGAA+TGG | + | chr7.2:20548292-20548311 | None:intergenic | 20.0% |
| ! | AAATTGTTTCATGTAAAAGG+GGG | + | chr7.2:20548021-20548040 | None:intergenic | 25.0% |
| ! | CAAATTGTTTCATGTAAAAG+GGG | + | chr7.2:20548022-20548041 | None:intergenic | 25.0% |
| ! | CCTATATAGTATATACCATT+GGG | - | chr7.2:20548049-20548068 | MS.gene068062:intron | 25.0% |
| ! | CTTATATTTAGACATTCTCT+AGG | + | chr7.2:20549527-20549546 | None:intergenic | 25.0% |
| ! | TATTGAACTAATCTTGACTA+TGG | - | chr7.2:20547674-20547693 | MS.gene068062:CDS | 25.0% |
| ! | TGAAAAAAGTTGTGCATTAT+GGG | + | chr7.2:20548398-20548417 | None:intergenic | 25.0% |
| ! | TGAAACTGTAGTATAGTATA+TGG | + | chr7.2:20548269-20548288 | None:intergenic | 25.0% |
| ! | TTGAAAAAAGTTGTGCATTA+TGG | + | chr7.2:20548399-20548418 | None:intergenic | 25.0% |
| !! | AAAACATTCACATTCAAGTT+TGG | - | chr7.2:20548667-20548686 | MS.gene068062:intron | 25.0% |
| !! | AAACATTCACATTCAAGTTT+GGG | - | chr7.2:20548668-20548687 | MS.gene068062:intron | 25.0% |
| !! | ACAATTTTCTAACTTCATTG+GGG | - | chr7.2:20549055-20549074 | MS.gene068062:intron | 25.0% |
| !! | AGCAATTTTCTAACTTCATT+GGG | + | chr7.2:20548768-20548787 | None:intergenic | 25.0% |
| !! | CAGTTTTGCTAAAGAATATT+GGG | + | chr7.2:20548139-20548158 | None:intergenic | 25.0% |
| !! | GAACAATTTTCTAACTTCAT+TGG | - | chr7.2:20549053-20549072 | MS.gene068062:intron | 25.0% |
| !! | GTCAAGATTAGTTCAATAAT+AGG | + | chr7.2:20547672-20547691 | None:intergenic | 25.0% |
| !! | TCAGTTTTGCTAAAGAATAT+TGG | + | chr7.2:20548140-20548159 | None:intergenic | 25.0% |
| !!! | ATTTTTTCACCCTTTAACAA+AGG | + | chr7.2:20549242-20549261 | None:intergenic | 25.0% |
| AACTGATAGTTAACTGTTGT+AGG | + | chr7.2:20548958-20548977 | None:intergenic | 30.0% | |
| AAGGGTGAAAAAATGAGTTA+CGG | - | chr7.2:20549248-20549267 | MS.gene068062:CDS | 30.0% | |
| AAGTGAGAAATTCACTCAAA+GGG | + | chr7.2:20547744-20547763 | None:intergenic | 30.0% | |
| AGATACCAAACTTTCTTATG+AGG | - | chr7.2:20548094-20548113 | MS.gene068062:intron | 30.0% | |
| ATAATCACTGTACTTATCAC+TGG | + | chr7.2:20548625-20548644 | None:intergenic | 30.0% | |
| ATCCGGAAATCTCAAAAAAT+AGG | - | chr7.2:20549289-20549308 | MS.gene068062:intron | 30.0% | |
| ATGAAATCAAAGTGGTATCT+TGG | - | chr7.2:20549441-20549460 | MS.gene068062:intron | 30.0% | |
| ATTAGTAGAGAAGATGTTGA+AGG | - | chr7.2:20549863-20549882 | MS.gene068062:intron | 30.0% | |
| CAAACTTTCTTATGAGGTAT+TGG | - | chr7.2:20548100-20548119 | MS.gene068062:intron | 30.0% | |
| CAATACCTCATAAGAAAGTT+TGG | + | chr7.2:20548102-20548121 | None:intergenic | 30.0% | |
| CCCAATGGTATATACTATAT+AGG | + | chr7.2:20548052-20548071 | None:intergenic | 30.0% | |
| GCCTATATAGTATATACCAT+TGG | - | chr7.2:20548048-20548067 | MS.gene068062:intron | 30.0% | |
| GTAACAGCAATTAACTATGT+AGG | + | chr7.2:20548908-20548927 | None:intergenic | 30.0% | |
| GTCTAAATATAAGATGAAGG+TGG | - | chr7.2:20549534-20549553 | MS.gene068062:intron | 30.0% | |
| TATAAAATCCGGAACTTCAA+GGG | + | chr7.2:20549202-20549221 | None:intergenic | 30.0% | |
| TCCGGAAATCTCAAAAAATA+GGG | - | chr7.2:20549290-20549309 | MS.gene068062:intron | 30.0% | |
| TGATATAAGAGCTAGTGTAT+CGG | + | chr7.2:20548328-20548347 | None:intergenic | 30.0% | |
| TTAAGATGACTTACCTCATT+AGG | - | chr7.2:20548485-20548504 | MS.gene068062:intron | 30.0% | |
| TTATAAAATCCGGAACTTCA+AGG | + | chr7.2:20549203-20549222 | None:intergenic | 30.0% | |
| TTGTTCATCTTTGCATTAAG+TGG | + | chr7.2:20549039-20549058 | None:intergenic | 30.0% | |
| TTTCTTATTGCTAGCATTGT+TGG | - | chr7.2:20547935-20547954 | MS.gene068062:intron | 30.0% | |
| ! | AAAATTGCTCTTTTGTCAAC+TGG | - | chr7.2:20548779-20548798 | MS.gene068062:intron | 30.0% |
| ! | AAATGAGTTACGGATTTTTC+CGG | - | chr7.2:20549258-20549277 | MS.gene068062:CDS | 30.0% |
| ! | AAATTGCTCTTTTGTCAACT+GGG | - | chr7.2:20548780-20548799 | MS.gene068062:intron | 30.0% |
| ! | AAGTTCCGGATTTTATAATC+CGG | - | chr7.2:20549205-20549224 | MS.gene068062:intron | 30.0% |
| ! | ACATAGTTAATTGCTGTTAC+TGG | - | chr7.2:20548908-20548927 | MS.gene068062:intron | 30.0% |
| ! | ATGGTGTTTTCCTTTGTTAA+AGG | - | chr7.2:20549229-20549248 | MS.gene068062:CDS | 30.0% |
| ! | ATTTGATGAGAACCTTTTTC+TGG | + | chr7.2:20547769-20547788 | None:intergenic | 30.0% |
| ! | CAATTTTCTAACTTCATTGG+GGG | - | chr7.2:20549056-20549075 | MS.gene068062:intron | 30.0% |
| ! | GAGCAATTTTCTAACTTCAT+TGG | + | chr7.2:20548769-20548788 | None:intergenic | 30.0% |
| ! | GCAATTTTCTAACTTCATTG+GGG | + | chr7.2:20548767-20548786 | None:intergenic | 30.0% |
| ! | GGGGATATTTTCGTTAAAAA+CGG | + | chr7.2:20548860-20548879 | None:intergenic | 30.0% |
| ! | TGGTGTTTTCCTTTGTTAAA+GGG | - | chr7.2:20549230-20549249 | MS.gene068062:CDS | 30.0% |
| ! | TTTTTCCGGATTTTGTAATC+CGG | - | chr7.2:20549272-20549291 | MS.gene068062:intron | 30.0% |
| !! | AGGGCATTTTTGGAAAAAAT+AGG | + | chr7.2:20549183-20549202 | None:intergenic | 30.0% |
| !! | AGTTAACTATCAGTTCTAGA+GGG | - | chr7.2:20548963-20548982 | MS.gene068062:intron | 30.0% |
| !! | ATGAAAAAAAGGGTGTTTAG+GGG | + | chr7.2:20549355-20549374 | None:intergenic | 30.0% |
| !! | CATGAAAAAAAGGGTGTTTA+GGG | + | chr7.2:20549356-20549375 | None:intergenic | 30.0% |
| !! | GGGCATTTTTGGAAAAAATA+GGG | + | chr7.2:20549182-20549201 | None:intergenic | 30.0% |
| !! | TTTTTCAAACAGTAGGAGAA+AGG | - | chr7.2:20548411-20548430 | MS.gene068062:intron | 30.0% |
| !!! | CACAACTTTTTTCAAACAGT+AGG | - | chr7.2:20548404-20548423 | MS.gene068062:intron | 30.0% |
| !!! | TGTTTTTTAGCTCTGCTATA+GGG | - | chr7.2:20549558-20549577 | MS.gene068062:intron | 30.0% |
| AAAATTTCTTCCCTGCAGTA+AGG | - | chr7.2:20548580-20548599 | MS.gene068062:intron | 35.0% | |
| AAACGGTAATTAACTGTCGT+TGG | + | chr7.2:20548843-20548862 | None:intergenic | 35.0% | |
| AACAAAGGAAAACACCATTC+CGG | + | chr7.2:20549227-20549246 | None:intergenic | 35.0% | |
| AACGATAGTTAACTGACGTT+GGG | + | chr7.2:20548880-20548899 | None:intergenic | 35.0% | |
| ACCAAAGGGTTATGTACAAA+TGG | + | chr7.2:20549087-20549106 | None:intergenic | 35.0% | |
| ACCAATTCTGAACATGTTTG+TGG | - | chr7.2:20549418-20549437 | MS.gene068062:intron | 35.0% | |
| ACCATTAGAGGAAGCAAAAA+TGG | + | chr7.2:20547874-20547893 | None:intergenic | 35.0% | |
| CAAGTGAGAAATTCACTCAA+AGG | + | chr7.2:20547745-20547764 | None:intergenic | 35.0% | |
| CATCAGCACCATGAAAAAAA+GGG | + | chr7.2:20549365-20549384 | None:intergenic | 35.0% | |
| CCAAAGGGTTATGTACAAAT+GGG | + | chr7.2:20549086-20549105 | None:intergenic | 35.0% | |
| CCATTCCGGATTATAAAATC+CGG | + | chr7.2:20549213-20549232 | None:intergenic | 35.0% | |
| CTGAAAGATTGATAAGAGAG+AGG | - | chr7.2:20549787-20549806 | MS.gene068062:intron | 35.0% | |
| CTTTGAGTGAATTTCTCACT+TGG | - | chr7.2:20547743-20547762 | MS.gene068062:intron | 35.0% | |
| GATTGATAAGAGAGAGGATT+CGG | - | chr7.2:20549793-20549812 | MS.gene068062:intron | 35.0% | |
| GATTTCCGGATTACAAAATC+CGG | + | chr7.2:20549280-20549299 | None:intergenic | 35.0% | |
| GTTTGTGGATGAAATCAAAG+TGG | - | chr7.2:20549433-20549452 | MS.gene068062:intron | 35.0% | |
| TAGCATTGTTGGAGAATCAT+TGG | - | chr7.2:20547946-20547965 | MS.gene068062:intron | 35.0% | |
| TCCACAAACATGTTCAGAAT+TGG | + | chr7.2:20549422-20549441 | None:intergenic | 35.0% | |
| TGTGGTACATCTATTTCAAG+AGG | - | chr7.2:20547976-20547995 | MS.gene068062:intron | 35.0% | |
| TTAGAAATGTGGGGTGAAAA+AGG | + | chr7.2:20548440-20548459 | None:intergenic | 35.0% | |
| TTAGAGGAAGCAAAAATGGT+AGG | + | chr7.2:20547870-20547889 | None:intergenic | 35.0% | |
| ! | AATAATAGGCATCTGAAGTG+TGG | + | chr7.2:20547658-20547677 | None:intergenic | 35.0% |
| ! | ACATTCAAGTTTGGGTTAGA+TGG | - | chr7.2:20548676-20548695 | MS.gene068062:intron | 35.0% |
| ! | ATAATAGGCATCTGAAGTGT+GGG | + | chr7.2:20547657-20547676 | None:intergenic | 35.0% |
| ! | CAGTTAACTATCAGTTCTAG+AGG | - | chr7.2:20548962-20548981 | MS.gene068062:intron | 35.0% |
| ! | TACACTAGCTCTTATATCAG+AGG | - | chr7.2:20548329-20548348 | MS.gene068062:intron | 35.0% |
| ! | TAGAAGTACACTTCCTAATG+AGG | + | chr7.2:20548501-20548520 | None:intergenic | 35.0% |
| ! | TCAAAGTGGTATCTTGGTTT+TGG | - | chr7.2:20549447-20549466 | MS.gene068062:intron | 35.0% |
| ! | TCAATATCAAGTTGTCCCAA+TGG | + | chr7.2:20548067-20548086 | None:intergenic | 35.0% |
| !! | ACCATTTTTGCTTCCTCTAA+TGG | - | chr7.2:20547870-20547889 | MS.gene068062:intron | 35.0% |
| !! | ATGTTGAAGGTATTGAAGTG+TGG | - | chr7.2:20549876-20549895 | MS.gene068062:intron | 35.0% |
| !! | CAAAGTGGTATCTTGGTTTT+GGG | - | chr7.2:20549448-20549467 | MS.gene068062:intron | 35.0% |
| !! | CCATGAAAAAAAGGGTGTTT+AGG | + | chr7.2:20549357-20549376 | None:intergenic | 35.0% |
| !! | GTTAACTATCAGTTCTAGAG+GGG | - | chr7.2:20548964-20548983 | MS.gene068062:intron | 35.0% |
| !! | TGAAAAAAAGGGTGTTTAGG+GGG | + | chr7.2:20549354-20549373 | None:intergenic | 35.0% |
| !! | TGAAGATGAGATTTGACTTG+TGG | - | chr7.2:20548209-20548228 | MS.gene068062:intron | 35.0% |
| !! | TGTTGAAGGTATTGAAGTGT+GGG | - | chr7.2:20549877-20549896 | MS.gene068062:intron | 35.0% |
| !! | TTAACTATCAGTTCTAGAGG+GGG | - | chr7.2:20548965-20548984 | MS.gene068062:intron | 35.0% |
| !!! | CCTAAACACCCTTTTTTTCA+TGG | - | chr7.2:20549354-20549373 | MS.gene068062:intron | 35.0% |
| !!! | CTGTTTTTTAGCTCTGCTAT+AGG | - | chr7.2:20549557-20549576 | MS.gene068062:intron | 35.0% |
| !!! | GCCCTATTTTTTGAGATTTC+CGG | + | chr7.2:20549294-20549313 | None:intergenic | 35.0% |
| AACATGTTCAGAATTGGTGC+TGG | + | chr7.2:20549416-20549435 | None:intergenic | 40.0% | |
| AAGTAATTCCCGGGACAAAA+TGG | + | chr7.2:20549132-20549151 | None:intergenic | 40.0% | |
| ACAAGGATAGTTATGTCAGC+TGG | + | chr7.2:20549601-20549620 | None:intergenic | 40.0% | |
| ACGATAGTTAACTGACGTTG+GGG | + | chr7.2:20548879-20548898 | None:intergenic | 40.0% | |
| AGAAATAGCTCCAGCAGAAT+GGG | + | chr7.2:20549909-20549928 | None:intergenic | 40.0% | |
| AGGTATGGACTTCTTGATTG+TGG | - | chr7.2:20547618-20547637 | MS.gene068062:CDS | 40.0% | |
| AGTAATTCCCGGGACAAAAT+GGG | + | chr7.2:20549131-20549150 | None:intergenic | 40.0% | |
| ATCAAGAAGTCCATACCTGA+AGG | + | chr7.2:20547616-20547635 | None:intergenic | 40.0% | |
| ATGGTAGGTCGAAACAATCA+AGG | + | chr7.2:20547855-20547874 | None:intergenic | 40.0% | |
| ATTGTGAAGATTGAAGGTGG+TGG | - | chr7.2:20549827-20549846 | MS.gene068062:intron | 40.0% | |
| CAAAAATGCCCTTGAAGTTC+CGG | - | chr7.2:20549191-20549210 | MS.gene068062:intron | 40.0% | |
| CCCATTTGTACATAACCCTT+TGG | - | chr7.2:20549083-20549102 | MS.gene068062:intron | 40.0% | |
| GAACGATAGTTAACTGACGT+TGG | + | chr7.2:20548881-20548900 | None:intergenic | 40.0% | |
| GCATCAGCACCATGAAAAAA+AGG | + | chr7.2:20549366-20549385 | None:intergenic | 40.0% | |
| GGTGTGATTGTGAAGATTGA+AGG | - | chr7.2:20549821-20549840 | MS.gene068062:intron | 40.0% | |
| GTGATTGTGAAGATTGAAGG+TGG | - | chr7.2:20549824-20549843 | MS.gene068062:intron | 40.0% | |
| TAGCTCTTATATCAGAGGCA+GGG | - | chr7.2:20548334-20548353 | MS.gene068062:intron | 40.0% | |
| TCATGTAAAAGGGGGTAATG+TGG | + | chr7.2:20548013-20548032 | None:intergenic | 40.0% | |
| TGGTAGGTCGAAACAATCAA+GGG | + | chr7.2:20547854-20547873 | None:intergenic | 40.0% | |
| TTGTGAAGATTGAAGGTGGT+GGG | - | chr7.2:20549828-20549847 | MS.gene068062:intron | 40.0% | |
| TTTCTCACTTGGCCAGAAAA+AGG | - | chr7.2:20547754-20547773 | MS.gene068062:intron | 40.0% | |
| ! | ACTTGTTAATCTCTGCCTTG+AGG | + | chr7.2:20547828-20547847 | None:intergenic | 40.0% |
| ! | AGTCAAAACCCATTTTGTCC+CGG | - | chr7.2:20549120-20549139 | MS.gene068062:intron | 40.0% |
| ! | CCGGATTTTATAATCCGGAA+TGG | - | chr7.2:20549210-20549229 | MS.gene068062:intron | 40.0% |
| ! | CTCTTTTGTCAACTGGGATT+TGG | - | chr7.2:20548786-20548805 | MS.gene068062:intron | 40.0% |
| ! | TGGGTTAGATGTGTCTGTTT+GGG | - | chr7.2:20548737-20548756 | MS.gene068062:intron | 40.0% |
| ! | TTCAAGTTTGGGTTAGATGG+AGG | - | chr7.2:20548679-20548698 | MS.gene068062:intron | 40.0% |
| ! | TTGGGTTAGATGTGTCTGTT+TGG | - | chr7.2:20548736-20548755 | MS.gene068062:intron | 40.0% |
| !! | ACGTGTGCTGTTTAGAAATG+TGG | + | chr7.2:20548451-20548470 | None:intergenic | 40.0% |
| !! | AGAATCATTGGTTCAGGTTG+TGG | - | chr7.2:20547958-20547977 | MS.gene068062:intron | 40.0% |
| !! | CGTGTGCTGTTTAGAAATGT+GGG | + | chr7.2:20548450-20548469 | None:intergenic | 40.0% |
| !! | GAGATTTGACTTGTGGCATA+GGG | - | chr7.2:20548216-20548235 | MS.gene068062:intron | 40.0% |
| !! | GTGTGCTGTTTAGAAATGTG+GGG | + | chr7.2:20548449-20548468 | None:intergenic | 40.0% |
| !! | TGAGATTTGACTTGTGGCAT+AGG | - | chr7.2:20548215-20548234 | MS.gene068062:intron | 40.0% |
| !! | TGTTGGAGAATCATTGGTTC+AGG | - | chr7.2:20547952-20547971 | MS.gene068062:intron | 40.0% |
| !!! | GGCGCGTTACATGATTTTTT+CGG | - | chr7.2:20549311-20549330 | MS.gene068062:intron | 40.0% |
| AACCTGTGTGCATTTCCCTT+TGG | - | chr7.2:20547712-20547731 | MS.gene068062:intron | 45.0% | |
| AAGAGAGAGGATTCGGAGAA+AGG | - | chr7.2:20549800-20549819 | MS.gene068062:intron | 45.0% | |
| ACCTGTGTGCATTTCCCTTT+GGG | - | chr7.2:20547713-20547732 | MS.gene068062:intron | 45.0% | |
| ACTCAAAGGGAAAAGCCCAA+AGG | + | chr7.2:20547731-20547750 | None:intergenic | 45.0% | |
| AGGGTGGGAAAAGTAATTCC+CGG | + | chr7.2:20549142-20549161 | None:intergenic | 45.0% | |
| AGTACACCCCAAGTCATGTT+AGG | - | chr7.2:20548549-20548568 | MS.gene068062:intron | 45.0% | |
| ATGGTGAGTACCTCTACTAC+TGG | - | chr7.2:20547889-20547908 | MS.gene068062:intron | 45.0% | |
| CAGAAATAGCTCCAGCAGAA+TGG | + | chr7.2:20549910-20549929 | None:intergenic | 45.0% | |
| CGGTAATTAACTGTCGTTGG+AGG | + | chr7.2:20548840-20548859 | None:intergenic | 45.0% | |
| CTCAAAGGGAAAAGCCCAAA+GGG | + | chr7.2:20547730-20547749 | None:intergenic | 45.0% | |
| GAACAGTAGTTAACTGCCGT+CGG | - | chr7.2:20548930-20548949 | MS.gene068062:intron | 45.0% | |
| GCAATCCGGATTACGTAATC+CGG | - | chr7.2:20549384-20549403 | MS.gene068062:intron | 45.0% | |
| GCATTATGGGCAACTGTAGT+AGG | + | chr7.2:20548385-20548404 | None:intergenic | 45.0% | |
| GGTAGGTCGAAACAATCAAG+GGG | + | chr7.2:20547853-20547872 | None:intergenic | 45.0% | |
| GTACACCCCAAGTCATGTTA+GGG | - | chr7.2:20548550-20548569 | MS.gene068062:intron | 45.0% | |
| TAATCTCTGCCTTGAGGACA+AGG | + | chr7.2:20547822-20547841 | None:intergenic | 45.0% | |
| TACACCCCAAGTCATGTTAG+GGG | - | chr7.2:20548551-20548570 | MS.gene068062:intron | 45.0% | |
| TAGCCTGCTTCAAGACCAAA+GGG | + | chr7.2:20549101-20549120 | None:intergenic | 45.0% | |
| TGTGAAGATTGAAGGTGGTG+GGG | - | chr7.2:20549829-20549848 | MS.gene068062:intron | 45.0% | |
| TTCTTGATTGTGGCCTGATC+AGG | - | chr7.2:20547628-20547647 | MS.gene068062:CDS | 45.0% | |
| ! | CTAGCTCTTATATCAGAGGC+AGG | - | chr7.2:20548333-20548352 | MS.gene068062:intron | 45.0% |
| ! | GTCAAAACCCATTTTGTCCC+GGG | - | chr7.2:20549121-20549140 | MS.gene068062:intron | 45.0% |
| ! | TGTCAACTGGGATTTGGTCT+CGG | - | chr7.2:20548792-20548811 | MS.gene068062:intron | 45.0% |
| !! | GTAGAGGTACTCACCATTAG+AGG | + | chr7.2:20547886-20547905 | None:intergenic | 45.0% |
| !! | TAACCCTTTGGTCTTGAAGC+AGG | - | chr7.2:20549095-20549114 | MS.gene068062:intron | 45.0% |
| !! | TTAACTGTTGTAGGTGCCGA+CGG | + | chr7.2:20548949-20548968 | None:intergenic | 45.0% |
| !! | TTCATGGTGCTGATGCAATC+CGG | - | chr7.2:20549370-20549389 | MS.gene068062:intron | 45.0% |
| !!! | AAGGGTGTTTAGGGGGTTTT+CGG | + | chr7.2:20549347-20549366 | None:intergenic | 45.0% |
| !!! | CGGAACTTCAAGGGCATTTT+TGG | + | chr7.2:20549193-20549212 | None:intergenic | 45.0% |
| !! | AAAAAAAAAAACAAAAAAAA+AGG | - | chr7.2:20549750-20549769 | MS.gene068062:intron | 5.0% |
| !! | GTAATTAAAAAAAAAAAATT+TGG | - | chr7.2:20548717-20548736 | MS.gene068062:intron | 5.0% |
| ACACCCCAAGTCATGTTAGG+GGG | - | chr7.2:20548552-20548571 | MS.gene068062:intron | 50.0% | |
| AGGACAAGGCAGTTGCATGA+AGG | + | chr7.2:20547808-20547827 | None:intergenic | 50.0% | |
| AGTCCACTCGTGAAAGAGGA+AGG | + | chr7.2:20549498-20549517 | None:intergenic | 50.0% | |
| ATCTCTATCCGTCAGTGCTC+TGG | - | chr7.2:20548243-20548262 | MS.gene068062:intron | 50.0% | |
| ATGCAACTGCCTTGTCCTCA+AGG | - | chr7.2:20547810-20547829 | MS.gene068062:intron | 50.0% | |
| CTAGCCTGCTTCAAGACCAA+AGG | + | chr7.2:20549102-20549121 | None:intergenic | 50.0% | |
| CTTATATCAGAGGCAGGGCA+GGG | - | chr7.2:20548339-20548358 | MS.gene068062:intron | 50.0% | |
| CTTCCTTCCTCTTTCACGAG+TGG | - | chr7.2:20549492-20549511 | MS.gene068062:intron | 50.0% | |
| GAAGTGTGGGATTCCTGATC+AGG | + | chr7.2:20547644-20547663 | None:intergenic | 50.0% | |
| GCTGTCCGGATTACGTAATC+CGG | + | chr7.2:20549392-20549411 | None:intergenic | 50.0% | |
| GGGTGGGAAAAGTAATTCCC+GGG | + | chr7.2:20549141-20549160 | None:intergenic | 50.0% | |
| TCCAAGTCCACTCGTGAAAG+AGG | + | chr7.2:20549502-20549521 | None:intergenic | 50.0% | |
| TCTTATATCAGAGGCAGGGC+AGG | - | chr7.2:20548338-20548357 | MS.gene068062:intron | 50.0% | |
| TGAGTACCTCTACTACTGGC+TGG | - | chr7.2:20547893-20547912 | MS.gene068062:intron | 50.0% | |
| ! | GTCAACTGGGATTTGGTCTC+GGG | - | chr7.2:20548793-20548812 | MS.gene068062:intron | 50.0% |
| ! | TCCTCTTTCACGAGTGGACT+TGG | - | chr7.2:20549498-20549517 | MS.gene068062:intron | 50.0% |
| !! | AGATTGAAGGTGGTGGGGAT+AGG | - | chr7.2:20549834-20549853 | MS.gene068062:intron | 50.0% |
| !! | AGCACTGACGGATAGAGATG+AGG | + | chr7.2:20548242-20548261 | None:intergenic | 50.0% |
| !! | GTATATGGCCAGAGCACTGA+CGG | + | chr7.2:20548254-20548273 | None:intergenic | 50.0% |
| CCAAGTCATGTTAGGGGGTG+GGG | - | chr7.2:20548557-20548576 | MS.gene068062:intron | 55.0% | |
| CCACCCCCTAACATGACTTG+GGG | + | chr7.2:20548558-20548577 | None:intergenic | 55.0% | |
| CCCAAGTCATGTTAGGGGGT+GGG | - | chr7.2:20548556-20548575 | MS.gene068062:intron | 55.0% | |
| CCCACCCCCTAACATGACTT+GGG | + | chr7.2:20548559-20548578 | None:intergenic | 55.0% | |
| CCTTTGGCACTTCAGCCTTC+AGG | - | chr7.2:20547598-20547617 | MS.gene068062:CDS | 55.0% | |
| CGCATACCAGCCAGTAGTAG+AGG | + | chr7.2:20547902-20547921 | None:intergenic | 55.0% | |
| CGCGAGGAAAGTCATAGGGT+GGG | + | chr7.2:20549157-20549176 | None:intergenic | 55.0% | |
| GCAGCTTGTGCCAAGTCCTT+TGG | - | chr7.2:20547582-20547601 | MS.gene068062:CDS | 55.0% | |
| GCCCAAAGGGAAATGCACAC+AGG | + | chr7.2:20547717-20547736 | None:intergenic | 55.0% | |
| GGCACTTCAGCCTTCAGGTA+TGG | - | chr7.2:20547603-20547622 | MS.gene068062:CDS | 55.0% | |
| TGGAAAAAATAGGGCGCGCG+AGG | + | chr7.2:20549173-20549192 | None:intergenic | 55.0% | |
| TGGGAGAGTTCCCATTCTGC+TGG | - | chr7.2:20549896-20549915 | MS.gene068062:intron | 55.0% | |
| ! | CCTGAAGGCTGAAGTGCCAA+AGG | + | chr7.2:20547601-20547620 | None:intergenic | 55.0% |
| ! | GGCTGAAGTGCCAAAGGACT+TGG | + | chr7.2:20547595-20547614 | None:intergenic | 55.0% |
| !! | GAATTGGTGCTGGTGCTGTC+CGG | + | chr7.2:20549406-20549425 | None:intergenic | 55.0% |
| CCCCAAGTCATGTTAGGGGG+TGG | - | chr7.2:20548555-20548574 | MS.gene068062:intron | 60.0% | |
| CCCCACCCCCTAACATGACT+TGG | + | chr7.2:20548560-20548579 | None:intergenic | 60.0% | |
| GCCACGCAGACCTTACTGCA+GGG | + | chr7.2:20548593-20548612 | None:intergenic | 60.0% | |
| GCGCGAGGAAAGTCATAGGG+TGG | + | chr7.2:20549158-20549177 | None:intergenic | 60.0% | |
| GGCGCGCGAGGAAAGTCATA+GGG | + | chr7.2:20549161-20549180 | None:intergenic | 60.0% | |
| TCCCTGCAGTAAGGTCTGCG+TGG | - | chr7.2:20548589-20548608 | MS.gene068062:intron | 60.0% | |
| TGCCACGCAGACCTTACTGC+AGG | + | chr7.2:20548594-20548613 | None:intergenic | 60.0% | |
| GGGCGCGCGAGGAAAGTCAT+AGG | + | chr7.2:20549162-20549181 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 20547580 | 20549937 | 20547580 | ID=MS.gene068062 |
| chr7.2 | mRNA | 20547580 | 20549937 | 20547580 | ID=MS.gene068062.t1;Parent=MS.gene068062 |
| chr7.2 | exon | 20549898 | 20549937 | 20549898 | ID=MS.gene068062.t1.exon1;Parent=MS.gene068062.t1 |
| chr7.2 | CDS | 20549898 | 20549937 | 20549898 | ID=cds.MS.gene068062.t1;Parent=MS.gene068062.t1 |
| chr7.2 | exon | 20549603 | 20549747 | 20549603 | ID=MS.gene068062.t1.exon2;Parent=MS.gene068062.t1 |
| chr7.2 | CDS | 20549603 | 20549747 | 20549603 | ID=cds.MS.gene068062.t1;Parent=MS.gene068062.t1 |
| chr7.2 | exon | 20549214 | 20549280 | 20549214 | ID=MS.gene068062.t1.exon3;Parent=MS.gene068062.t1 |
| chr7.2 | CDS | 20549214 | 20549280 | 20549214 | ID=cds.MS.gene068062.t1;Parent=MS.gene068062.t1 |
| chr7.2 | exon | 20547580 | 20547723 | 20547580 | ID=MS.gene068062.t1.exon4;Parent=MS.gene068062.t1 |
| chr7.2 | CDS | 20547580 | 20547723 | 20547580 | ID=cds.MS.gene068062.t1;Parent=MS.gene068062.t1 |
| Gene Sequence |
| Protein sequence |
