AlfalfaGEDB | MS.gene068515

M. sativa cultivar XinJiangDaYe / MS.gene068515

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008080 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068515.t1	XP_024634871.1	100	175	0	0	1	175	686	860	1.90E-91	345.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068515.t1	F4IXE7	35.1	151	94	3	22	169	872	1021	8.4e-16	85.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068515.t1	G7ZZK5	100.0	175	0	0	1	175	723	897	1.4e-91	345.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049343	MS.gene068515	0.802235	6.18E-49	-1.69E-46
MS.gene050750	MS.gene068515	0.800588	1.34E-48	-1.69E-46
MS.gene050905	MS.gene068515	-0.810463	1.14E-50	-1.69E-46
MS.gene052519	MS.gene068515	0.809906	1.50E-50	-1.69E-46
MS.gene053145	MS.gene068515	0.814465	1.52E-51	-1.69E-46
MS.gene054559	MS.gene068515	0.822158	2.75E-53	-1.69E-46
MS.gene055701	MS.gene068515	0.802342	5.87E-49	-1.69E-46
MS.gene061040	MS.gene068515	-0.805073	1.59E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 41 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATCAGTGCTGGAAAAGA+TGG	0.491255	1.3:-48066869	MS.gene068515:CDS
AAGCTGGTGCTCCCTGCTGC+AGG	0.415428	1.3:-48067182	MS.gene068515:CDS
AATATTTCTGGCCAAGAATT+CGG	0.299340	1.3:-48067617	MS.gene068515:CDS
ACGACCAGATATTGCAACGA+TGG	0.617395	1.3:+48068311	None:intergenic
ACTCTGCATCCCCTGCAGCA+GGG	0.632470	1.3:+48067171	None:intergenic
AGCTGGTGCTCCCTGCTGCA+GGG	0.540416	1.3:-48067181	MS.gene068515:CDS
AGTGCTGGAAAAGATGGTGC+AGG	0.576023	1.3:-48066863	MS.gene068515:CDS
AGTTCTATTGTAGTATCTGC+CGG	0.436363	1.3:-48067483	MS.gene068515:CDS
ATATTTCTGGCCAAGAATTC+GGG	0.311304	1.3:-48067616	MS.gene068515:CDS
ATTTCTGGCCAAGAATTCGG+GGG	0.674461	1.3:-48067614	MS.gene068515:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCTCAGTAAACCCAATTAA+AGG	+	chr1.3:48067555-48067574	None:intergenic	30.0%
ATGATGCATTTGTCAACAAT+GGG	-	chr1.3:48068200-48068219	MS.gene068515:intron	30.0%
ATGTTAATAGAGCTTATCGT+TGG	+	chr1.3:48068769-48068788	None:intergenic	30.0%
CCATATACAGCAAAAATTCA+AGG	+	chr1.3:48066979-48066998	None:intergenic	30.0%
GACCAAAATTAAGAACTATC+AGG	+	chr1.3:48068516-48068535	None:intergenic	30.0%
GTTAACCAAACATCTTAAAG+AGG	-	chr1.3:48069134-48069153	MS.gene068515:CDS	30.0%
TCCATTTGGACTAAGAAATT+AGG	-	chr1.3:48068899-48068918	MS.gene068515:intron	30.0%
TCCCAAGTTCAATTATAAGA+TGG	+	chr1.3:48067276-48067295	None:intergenic	30.0%
TGATTCCTGTTATGGTATAT+GGG	-	chr1.3:48067764-48067783	MS.gene068515:intron	30.0%
TTAATTGGGTTTACTGAGAT+GGG	-	chr1.3:48067555-48067574	MS.gene068515:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	48066852	48069218	48066852	ID=MS.gene068515
chr1.3	mRNA	48066852	48069218	48066852	ID=MS.gene068515.t1;Parent=MS.gene068515
chr1.3	exon	48069127	48069218	48069127	ID=MS.gene068515.t1.exon1;Parent=MS.gene068515.t1
chr1.3	CDS	48069127	48069218	48069127	ID=cds.MS.gene068515.t1;Parent=MS.gene068515.t1
chr1.3	exon	48068285	48068346	48068285	ID=MS.gene068515.t1.exon2;Parent=MS.gene068515.t1
chr1.3	CDS	48068285	48068346	48068285	ID=cds.MS.gene068515.t1;Parent=MS.gene068515.t1
chr1.3	exon	48067587	48067643	48067587	ID=MS.gene068515.t1.exon3;Parent=MS.gene068515.t1
chr1.3	CDS	48067587	48067643	48067587	ID=cds.MS.gene068515.t1;Parent=MS.gene068515.t1
chr1.3	exon	48067410	48067503	48067410	ID=MS.gene068515.t1.exon4;Parent=MS.gene068515.t1
chr1.3	CDS	48067410	48067503	48067410	ID=cds.MS.gene068515.t1;Parent=MS.gene068515.t1
chr1.3	exon	48067124	48067264	48067124	ID=MS.gene068515.t1.exon5;Parent=MS.gene068515.t1
chr1.3	CDS	48067124	48067264	48067124	ID=cds.MS.gene068515.t1;Parent=MS.gene068515.t1
chr1.3	exon	48066852	48066935	48066852	ID=MS.gene068515.t1.exon6;Parent=MS.gene068515.t1
chr1.3	CDS	48066852	48066935	48066852	ID=cds.MS.gene068515.t1;Parent=MS.gene068515.t1

Gene Sequence

>MS.gene068515

ACATGAATGATATCCAATGGAGAATTTTAAGTGGCAAAAGTCGTTATGCAGAGCATTTACCGTTACTTTCACGAGCTGCTGCAATTTTTCGAGTGAGTGTTTATGGCTTCTGTGTTACTTGTGACCTTGAATTTTTGCTGTATATGGTTGATATTTTTAATATTTGTGTCAAAAATCTGGTTTTCATGGTTTTTCCTTGCACGATATTCTCTGTTCCTTACTATAAAACCCACTTTTGAGATTTATTTTTCCCTTGATATAAGATTCTTTACAAAATTTCACATTCATTAATATTTTCTTTTCAAAAATACCCCTATTTAATATAAAGTGACTTTTCTACATACCCTTTCACACCGGGTTATAGGCCTGGAGCATGGAAAATGTTGGTGGCCCAACGATGGATTTAGAAGACACTCTAATACCATCTTATAATTGAACTTGGGATCTAACTCATTATGACAAGATCATTTTGCAAAACGAGGAGTGTTCAAACTTAATAAACACTACTTAAGCTATATTTCTAGGTGTTGTAGATTGAACACACCCCCTTACACAAAATGAGGGCCGTTCAAACCTAATAAACTCTACTTAAGCTATATTTCTAGGCGATTTAGAATTGAACACACCCCCTTACACCCAATGAAGGCAGCCCAAAGACTCCACAGTTAACACTGCTTTGCCAAAGCAACTACTGACTTTTCCTTTAATTGGGTTTACTGAGATGGGGGATTCTCTTGCTCATTTAGGTTGTAGAATAGTTTTTGGTAGAAATTTTTAACTGTTGTGAAATATTTACATTTTGAAAATGCCTCTAGCATTCTATCTTTATTTTTTAACTGCATTTTGTTCATGCTCTGGTAATGTTTCGACAGGAGTGCTTTGATCCCATCGTTGCAATATCTGGTCGTGACCTGATTCCTGTTATGGTATATGGGTAAGCAACTACAATTTATTTTAATGTTGGTTGATAGTGGTATCCTCTCTATACAACCTTCTTTCCTCGTGCTTTCAGTTTCCCAGTGGTTAGTTATTGTACACATGAATTATTAACAGTCTTAAATTACTAACTGTAGATTATAGACTACCAATGCCATATGTTGAAGCTAAACCTGAATTGTGATAAATATGCATATTTCCTCTTTTACTCTCTCATCCCCTCTCCTCTACATAATCAATGGTCGATGGAAAACCTAGTTGATAGGCTGTCTGACATTGCGTAAGAGCATGTTTTAGGGTGATTTAATTTCCACTTCTATCCATCGTTCACAGGAATTTTTTCATTTAGCATGAGTTTATATATTTTTTATTACGAGTCTTGGCAGAGTCTTTTTGGTAGACGAGTCACATGATGATGCATTTGTCAACAATGGGTTTTAAATGATTTTTTCAAGAATGTTGCTAACTAGTGTAGTGCCATAGCCATAAGGACACTAGTTAAGAAATCAATGCACGAGAAACTTAATTGAAAATCACAAGATTAAATGTTTAAGGAATCTTAAAGCTCAATTAAATGTATTTTGTGGTCTCTTTATTCCATGTTTTCTGATAATATAGTGTATTTTGAATTTTGTGCAGGCGAAATATTTCTGGCCAAGAATTCGGGGGAATGTATTGCATCGTTTTAATTGTGAAGTATGTGGCTTTCTCTGCTTTCTTGTTTTCCTGATAGTTCTTAATTTTGGTCAAACTGACTTCGTATGTATCATACTTTGCAGTTCTATTGTAGTATCTGCCGGGCTTCTTAGGATTTTTGGCCGCAATATTGCTGAGCTTCCCCTGGTAGCTACAAGTAGAGAGCATCAAGGAAAAGTAAGCAATTATTTTTTTTTACGAATTACTCATATTGAAAAAGTGGACTAATAGATGCATTCTAATAACTTTCTTTTTTACATCTTCCAAAGATGATATATTTTACCAACGATAAGCTCTATTAACATGCGATTTTCCCTTTCAGGGTTATTTTCAAGCGCTGTTCTCTTGCATAGAGAGGTTGCTGTCTTCTCTAAATGTAGAAAAGCTGGTGCTCCCTGCTGCAGGGGATGCAGAGTCCATTTGGACTAAGAAATTAGGCTTTCACAAGATGAGTGAAGATCAGGTAAAGTTCATCTTCTAAATTTACTGGTTAACTTAAACACGACCTTTATATATTATTGTTATCTTACTGACATGGCATACTAAGAGAATGGTTATGTTGACCTGAGTTCAGAATTGGAAGAAACTGTTGCGAACATTAACAATTAACAAGTATTAACAACTACAATTTTTGTTTTTTGTTTTGGCCAGTTAACCAAACATCTTAAAGAGGTGCAGCTCACCCTCTTCAACAAAACATCAGTGCTGGAAAAGATGGTGCAGGCGACAGAATGA

Protein sequence

>MS.gene068515.t1

TUMISNGEFUVAKVVMQSIYRYFHELLQFFESALIPSLQYLVVTUFLLWYMGEIFLAKNSGECIASFULUILLUYLPGFLGFLAAILLSFPWULQVESIKEKVIFKRCSLAURGCCLLUMUKSWCSLLQGMQSPFGLRNUAFTRUVKISUPNILKRCSSPSSTKHQCWKRWCRRQN