Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068515.t1 | XP_024634871.1 | 100 | 175 | 0 | 0 | 1 | 175 | 686 | 860 | 1.90E-91 | 345.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068515.t1 | F4IXE7 | 35.1 | 151 | 94 | 3 | 22 | 169 | 872 | 1021 | 8.4e-16 | 85.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068515.t1 | G7ZZK5 | 100.0 | 175 | 0 | 0 | 1 | 175 | 723 | 897 | 1.4e-91 | 345.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049343 | MS.gene068515 | 0.802235 | 6.18E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene068515 | 0.800588 | 1.34E-48 | -1.69E-46 |
| MS.gene050905 | MS.gene068515 | -0.810463 | 1.14E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene068515 | 0.809906 | 1.50E-50 | -1.69E-46 |
| MS.gene053145 | MS.gene068515 | 0.814465 | 1.52E-51 | -1.69E-46 |
| MS.gene054559 | MS.gene068515 | 0.822158 | 2.75E-53 | -1.69E-46 |
| MS.gene055701 | MS.gene068515 | 0.802342 | 5.87E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene068515 | -0.805073 | 1.59E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 41 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGCAGGCGAAATATTTC+TGG | 0.184888 | 1.3:-48067629 | MS.gene068515:intron |
| CTGATTCCTGTTATGGTATA+TGG | 0.204303 | 1.3:-48068285 | MS.gene068515:CDS |
| TAGTATCTGCCGGGCTTCTT+AGG | 0.257711 | 1.3:-48067473 | MS.gene068515:CDS |
| TCCATTTGGACTAAGAAATT+AGG | 0.275286 | 1.3:-48067149 | MS.gene068515:CDS |
| AATATTTCTGGCCAAGAATT+CGG | 0.299340 | 1.3:-48067617 | MS.gene068515:CDS |
| CTGCACCTCTTTAAGATGTT+TGG | 0.299842 | 1.3:+48066909 | None:intergenic |
| ATATTTCTGGCCAAGAATTC+GGG | 0.311304 | 1.3:-48067616 | MS.gene068515:CDS |
| GCCTAATTTCTTAGTCCAAA+TGG | 0.376041 | 1.3:+48067148 | None:intergenic |
| CAGGGGATGCAGAGTCCATT+TGG | 0.382960 | 1.3:-48067163 | MS.gene068515:CDS |
| GATCCCATCGTTGCAATATC+TGG | 0.389667 | 1.3:-48068315 | MS.gene068515:CDS |
| GCTTACCCATATACCATAAC+AGG | 0.391501 | 1.3:+48068279 | None:intergenic |
| GACTCTGCATCCCCTGCAGC+AGG | 0.410293 | 1.3:+48067170 | None:intergenic |
| AAGCTGGTGCTCCCTGCTGC+AGG | 0.415428 | 1.3:-48067182 | MS.gene068515:CDS |
| TCGTGACCTGATTCCTGTTA+TGG | 0.418037 | 1.3:-48068292 | MS.gene068515:CDS |
| AGTTCTATTGTAGTATCTGC+CGG | 0.436363 | 1.3:-48067483 | MS.gene068515:CDS |
| TTCTCTAAATGTAGAAAAGC+TGG | 0.453959 | 1.3:-48067198 | MS.gene068515:CDS |
| CATATACCATAACAGGAATC+AGG | 0.457604 | 1.3:+48068286 | None:intergenic |
| TCACAAGATGAGTGAAGATC+AGG | 0.472645 | 1.3:-48067123 | MS.gene068515:intron |
| TGATTCCTGTTATGGTATAT+GGG | 0.477661 | 1.3:-48068284 | MS.gene068515:intron |
| GCTCTCTACTTGTAGCTACC+AGG | 0.479856 | 1.3:+48067421 | None:intergenic |
| AACATCAGTGCTGGAAAAGA+TGG | 0.491255 | 1.3:-48066869 | MS.gene068515:CDS |
| CTTCAACAAAACATCAGTGC+TGG | 0.496640 | 1.3:-48066878 | MS.gene068515:CDS |
| TGCCACTTAAAATTCTCCAT+TGG | 0.501723 | 1.3:+48069183 | None:intergenic |
| CAATATTGCTGAGCTTCCCC+TGG | 0.530864 | 1.3:-48067439 | MS.gene068515:CDS |
| CGCTGTTCTCTTGCATAGAG+AGG | 0.535338 | 1.3:-48067229 | MS.gene068515:CDS |
| AGCTGGTGCTCCCTGCTGCA+GGG | 0.540416 | 1.3:-48067181 | MS.gene068515:CDS |
| GTTAACCAAACATCTTAAAG+AGG | 0.550069 | 1.3:-48066914 | MS.gene068515:CDS |
| GTTCTATTGTAGTATCTGCC+GGG | 0.553325 | 1.3:-48067482 | MS.gene068515:CDS |
| GCTGGTGCTCCCTGCTGCAG+GGG | 0.553471 | 1.3:-48067180 | MS.gene068515:CDS |
| GAGACATGAATGATATCCAA+TGG | 0.570210 | 1.3:-48069199 | MS.gene068515:CDS |
| AGTGCTGGAAAAGATGGTGC+AGG | 0.576023 | 1.3:-48066863 | MS.gene068515:CDS |
| CTCTCTACTTGTAGCTACCA+GGG | 0.577610 | 1.3:+48067422 | None:intergenic |
| CGACCAGATATTGCAACGAT+GGG | 0.591304 | 1.3:+48068312 | None:intergenic |
| ACGACCAGATATTGCAACGA+TGG | 0.617395 | 1.3:+48068311 | None:intergenic |
| TATTTCTGGCCAAGAATTCG+GGG | 0.624320 | 1.3:-48067615 | MS.gene068515:CDS |
| ACTCTGCATCCCCTGCAGCA+GGG | 0.632470 | 1.3:+48067171 | None:intergenic |
| GCAGCAGCTCGTGAAAGTAA+CGG | 0.635905 | 1.3:+48069137 | None:intergenic |
| GCTACAAGTAGAGAGCATCA+AGG | 0.644661 | 1.3:-48067414 | MS.gene068515:CDS |
| GGGGAAGCTCAGCAATATTG+CGG | 0.647399 | 1.3:+48067442 | None:intergenic |
| ATTTCTGGCCAAGAATTCGG+GGG | 0.674461 | 1.3:-48067614 | MS.gene068515:CDS |
| TCTCTACTTGTAGCTACCAG+GGG | 0.693635 | 1.3:+48067423 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATAACAATAATATATAA+AGG | + | chr1.3:48068992-48069011 | None:intergenic | 10.0% |
| !!! | AAAGTCACTTTATATTAAAT+AGG | + | chr1.3:48067167-48067186 | None:intergenic | 15.0% |
| !!! | AAGTCACTTTATATTAAATA+GGG | + | chr1.3:48067166-48067185 | None:intergenic | 15.0% |
| !!! | ACAATTTTTGTTTTTTGTTT+TGG | - | chr1.3:48069108-48069127 | MS.gene068515:intron | 15.0% |
| !!! | ACTACAATTTATTTTAATGT+TGG | - | chr1.3:48067793-48067812 | MS.gene068515:intron | 15.0% |
| !! | AATTACTCATATTGAAAAAG+TGG | - | chr1.3:48068684-48068703 | MS.gene068515:intron | 20.0% |
| !! | ATCACAAGATTAAATGTTTA+AGG | - | chr1.3:48068320-48068339 | MS.gene068515:CDS | 20.0% |
| !! | GAAAAATAAATCTCAAAAGT+GGG | + | chr1.3:48067083-48067102 | None:intergenic | 20.0% |
| !! | TAATATTTGTGTCAAAAATC+TGG | - | chr1.3:48067009-48067028 | MS.gene068515:intron | 20.0% |
| !! | TGTAAAGAATCTTATATCAA+GGG | + | chr1.3:48067105-48067124 | None:intergenic | 20.0% |
| !! | TTGGTAAAATATATCATCTT+TGG | + | chr1.3:48068750-48068769 | None:intergenic | 20.0% |
| !! | TTGTAAAGAATCTTATATCA+AGG | + | chr1.3:48067106-48067125 | None:intergenic | 20.0% |
| !!! | AGTCACTTTATATTAAATAG+GGG | + | chr1.3:48067165-48067184 | None:intergenic | 20.0% |
| !!! | ATATTTTTTATTACGAGTCT+TGG | - | chr1.3:48068148-48068167 | MS.gene068515:intron | 20.0% |
| ! | AAATAAAGATAGAATGCTAG+AGG | + | chr1.3:48067663-48067682 | None:intergenic | 25.0% |
| ! | ACCATCTTATAATTGAACTT+GGG | - | chr1.3:48067272-48067291 | MS.gene068515:intron | 25.0% |
| ! | ACTACTTAAGCTATATTTCT+AGG | - | chr1.3:48067354-48067373 | MS.gene068515:intron | 25.0% |
| ! | AGTTCATCTTCTAAATTTAC+TGG | - | chr1.3:48068951-48068970 | MS.gene068515:intron | 25.0% |
| ! | ATGCATATTTATCACAATTC+AGG | + | chr1.3:48067963-48067982 | None:intergenic | 25.0% |
| ! | CACTATATTATCAGAAAACA+TGG | + | chr1.3:48068388-48068407 | None:intergenic | 25.0% |
| ! | GGAAAAATAAATCTCAAAAG+TGG | + | chr1.3:48067084-48067103 | None:intergenic | 25.0% |
| ! | TACCATCTTATAATTGAACT+TGG | - | chr1.3:48067271-48067290 | MS.gene068515:intron | 25.0% |
| ! | TAGAGTTTATTAGGTTTGAA+CGG | + | chr1.3:48067419-48067438 | None:intergenic | 25.0% |
| ! | TAGCTTAAGTAGAGTTTATT+AGG | + | chr1.3:48067428-48067447 | None:intergenic | 25.0% |
| ! | TCTACTTAAGCTATATTTCT+AGG | - | chr1.3:48067435-48067454 | MS.gene068515:CDS | 25.0% |
| ! | TTATTGTTATCTTACTGACA+TGG | - | chr1.3:48068999-48069018 | MS.gene068515:intron | 25.0% |
| !! | GCTCAATTAAATGTATTTTG+TGG | - | chr1.3:48068352-48068371 | MS.gene068515:intron | 25.0% |
| !! | TTCCTGATAGTTCTTAATTT+TGG | - | chr1.3:48068511-48068530 | MS.gene068515:intron | 25.0% |
| !!! | ATTTTAATGTTGGTTGATAG+TGG | - | chr1.3:48067803-48067822 | MS.gene068515:intron | 25.0% |
| !!! | TACTGACTTTTCCTTTAATT+GGG | - | chr1.3:48067541-48067560 | MS.gene068515:intron | 25.0% |
| !!! | TTAGGTTGTAGAATAGTTTT+TGG | - | chr1.3:48067594-48067613 | MS.gene068515:CDS | 25.0% |
| ATCTCAGTAAACCCAATTAA+AGG | + | chr1.3:48067555-48067574 | None:intergenic | 30.0% | |
| ATGATGCATTTGTCAACAAT+GGG | - | chr1.3:48068200-48068219 | MS.gene068515:intron | 30.0% | |
| ATGTTAATAGAGCTTATCGT+TGG | + | chr1.3:48068769-48068788 | None:intergenic | 30.0% | |
| CCATATACAGCAAAAATTCA+AGG | + | chr1.3:48066979-48066998 | None:intergenic | 30.0% | |
| GACCAAAATTAAGAACTATC+AGG | + | chr1.3:48068516-48068535 | None:intergenic | 30.0% | |
| GTTAACCAAACATCTTAAAG+AGG | - | chr1.3:48069134-48069153 | MS.gene068515:CDS | 30.0% | |
| TCCATTTGGACTAAGAAATT+AGG | - | chr1.3:48068899-48068918 | MS.gene068515:intron | 30.0% | |
| TCCCAAGTTCAATTATAAGA+TGG | + | chr1.3:48067276-48067295 | None:intergenic | 30.0% | |
| TGATTCCTGTTATGGTATAT+GGG | - | chr1.3:48067764-48067783 | MS.gene068515:intron | 30.0% | |
| TTAATTGGGTTTACTGAGAT+GGG | - | chr1.3:48067555-48067574 | MS.gene068515:intron | 30.0% | |
| TTCTCTAAATGTAGAAAAGC+TGG | - | chr1.3:48068850-48068869 | MS.gene068515:intron | 30.0% | |
| TTTAATTGGGTTTACTGAGA+TGG | - | chr1.3:48067554-48067573 | MS.gene068515:intron | 30.0% | |
| TTTCTTAACTAGTGTCCTTA+TGG | + | chr1.3:48068274-48068293 | None:intergenic | 30.0% | |
| ! | ATCCAATGGAGAATTTTAAG+TGG | - | chr1.3:48066863-48066882 | MS.gene068515:CDS | 30.0% |
| !! | AATATTTCTGGCCAAGAATT+CGG | - | chr1.3:48068431-48068450 | MS.gene068515:intron | 30.0% |
| !! | CAAAAGTGGGTTTTATAGTA+AGG | + | chr1.3:48067070-48067089 | None:intergenic | 30.0% |
| !! | CCTTGAATTTTTGCTGTATA+TGG | - | chr1.3:48066976-48066995 | MS.gene068515:intron | 30.0% |
| !! | CTTTAAGATGTTTGGTTAAC+TGG | + | chr1.3:48069134-48069153 | None:intergenic | 30.0% |
| !! | GTGTATTTTGAATTTTGTGC+AGG | - | chr1.3:48068405-48068424 | MS.gene068515:intron | 30.0% |
| !!! | ATTTTTCGAGTGAGTGTTTA+TGG | - | chr1.3:48066935-48066954 | MS.gene068515:intron | 30.0% |
| !!! | CGTTTTAATTGTGAAGTATG+TGG | - | chr1.3:48068469-48068488 | MS.gene068515:intron | 30.0% |
| !!! | CTACTGACTTTTCCTTTAAT+TGG | - | chr1.3:48067540-48067559 | MS.gene068515:intron | 30.0% |
| !!! | TGTCAAAAATCTGGTTTTCA+TGG | - | chr1.3:48067018-48067037 | MS.gene068515:intron | 30.0% |
| AGTTCTATTGTAGTATCTGC+CGG | - | chr1.3:48068565-48068584 | MS.gene068515:intron | 35.0% | |
| ATTGATTATGTAGAGGAGAG+GGG | + | chr1.3:48068008-48068027 | None:intergenic | 35.0% | |
| CATATACCATAACAGGAATC+AGG | + | chr1.3:48067765-48067784 | None:intergenic | 35.0% | |
| CTGATTCCTGTTATGGTATA+TGG | - | chr1.3:48067763-48067782 | MS.gene068515:intron | 35.0% | |
| GAAAAAATTCCTGTGAACGA+TGG | + | chr1.3:48068111-48068130 | None:intergenic | 35.0% | |
| GATGATGCATTTGTCAACAA+TGG | - | chr1.3:48068199-48068218 | MS.gene068515:intron | 35.0% | |
| GCCTAATTTCTTAGTCCAAA+TGG | + | chr1.3:48068903-48068922 | None:intergenic | 35.0% | |
| GCTTGAAAATAACCCTGAAA+GGG | + | chr1.3:48068800-48068819 | None:intergenic | 35.0% | |
| GTGTACAATAACTAACCACT+GGG | + | chr1.3:48067870-48067889 | None:intergenic | 35.0% | |
| TAATTGGGTTTACTGAGATG+GGG | - | chr1.3:48067556-48067575 | MS.gene068515:intron | 35.0% | |
| TCTACATAATCAATGGTCGA+TGG | - | chr1.3:48068014-48068033 | MS.gene068515:intron | 35.0% | |
| TGTCTTCTAAATCCATCGTT+GGG | + | chr1.3:48067245-48067264 | None:intergenic | 35.0% | |
| TGTGTACAATAACTAACCAC+TGG | + | chr1.3:48067871-48067890 | None:intergenic | 35.0% | |
| TTAGCTTCAACATATGGCAT+TGG | + | chr1.3:48067939-48067958 | None:intergenic | 35.0% | |
| TTTCTTCCAATTCTGAACTC+AGG | + | chr1.3:48069050-48069069 | None:intergenic | 35.0% | |
| ! | ATCGACCATTGATTATGTAG+AGG | + | chr1.3:48068015-48068034 | None:intergenic | 35.0% |
| ! | CAAGATCATTTTGCAAAACG+AGG | - | chr1.3:48067311-48067330 | MS.gene068515:intron | 35.0% |
| ! | CATTGATTATGTAGAGGAGA+GGG | + | chr1.3:48068009-48068028 | None:intergenic | 35.0% |
| ! | TCAGGTTTAGCTTCAACATA+TGG | + | chr1.3:48067945-48067964 | None:intergenic | 35.0% |
| ! | TGCCACTTAAAATTCTCCAT+TGG | + | chr1.3:48066868-48066887 | None:intergenic | 35.0% |
| !! | ATATTTCTGGCCAAGAATTC+GGG | - | chr1.3:48068432-48068451 | MS.gene068515:intron | 35.0% |
| !! | ATTGCGTAAGAGCATGTTTT+AGG | - | chr1.3:48068063-48068082 | MS.gene068515:intron | 35.0% |
| !! | CACTGATGTTTTGTTGAAGA+GGG | + | chr1.3:48069169-48069188 | None:intergenic | 35.0% |
| !! | TTGCGTAAGAGCATGTTTTA+GGG | - | chr1.3:48068064-48068083 | MS.gene068515:intron | 35.0% |
| AACTAGTGTCCTTATGGCTA+TGG | + | chr1.3:48068268-48068287 | None:intergenic | 40.0% | |
| AATACATTCCCCCGAATTCT+TGG | + | chr1.3:48068445-48068464 | None:intergenic | 40.0% | |
| AATTGGGTTTACTGAGATGG+GGG | - | chr1.3:48067557-48067576 | MS.gene068515:intron | 40.0% | |
| AGTGTTAACTGTGGAGTCTT+TGG | + | chr1.3:48067505-48067524 | None:intergenic | 40.0% | |
| CCTCTCCTCTACATAATCAA+TGG | - | chr1.3:48068007-48068026 | MS.gene068515:intron | 40.0% | |
| CGATGGAAAACCTAGTTGAT+AGG | - | chr1.3:48068031-48068050 | MS.gene068515:intron | 40.0% | |
| CGCTTGAAAATAACCCTGAA+AGG | + | chr1.3:48068801-48068820 | None:intergenic | 40.0% | |
| CTTCAACAAAACATCAGTGC+TGG | - | chr1.3:48069170-48069189 | MS.gene068515:CDS | 40.0% | |
| GACATGGCATACTAAGAGAA+TGG | - | chr1.3:48069015-48069034 | MS.gene068515:intron | 40.0% | |
| GCTTACCCATATACCATAAC+AGG | + | chr1.3:48067772-48067791 | None:intergenic | 40.0% | |
| GGAAAAGTCAGTAGTTGCTT+TGG | + | chr1.3:48067534-48067553 | None:intergenic | 40.0% | |
| GGAAAGAAGGTTGTATAGAG+AGG | + | chr1.3:48067832-48067851 | None:intergenic | 40.0% | |
| GTGTCTTCTAAATCCATCGT+TGG | + | chr1.3:48067246-48067265 | None:intergenic | 40.0% | |
| GTGTTAACTGTGGAGTCTTT+GGG | + | chr1.3:48067504-48067523 | None:intergenic | 40.0% | |
| GTTCTATTGTAGTATCTGCC+GGG | - | chr1.3:48068566-48068585 | MS.gene068515:intron | 40.0% | |
| TCACAAGATGAGTGAAGATC+AGG | - | chr1.3:48068925-48068944 | MS.gene068515:intron | 40.0% | |
| TGTTGACCTGAGTTCAGAAT+TGG | - | chr1.3:48069041-48069060 | MS.gene068515:intron | 40.0% | |
| TTCTACATACCCTTTCACAC+CGG | - | chr1.3:48067186-48067205 | MS.gene068515:CDS | 40.0% | |
| TTGTGCAGGCGAAATATTTC+TGG | - | chr1.3:48068419-48068438 | MS.gene068515:intron | 40.0% | |
| ! | AACATCAGTGCTGGAAAAGA+TGG | - | chr1.3:48069179-48069198 | MS.gene068515:CDS | 40.0% |
| ! | AACATGCGATTTTCCCTTTC+AGG | - | chr1.3:48068784-48068803 | MS.gene068515:intron | 40.0% |
| ! | ACATGCGATTTTCCCTTTCA+GGG | - | chr1.3:48068785-48068804 | MS.gene068515:intron | 40.0% |
| ! | ACTGCATTTTGTTCATGCTC+TGG | - | chr1.3:48067687-48067706 | MS.gene068515:intron | 40.0% |
| ! | CCATTGATTATGTAGAGGAG+AGG | + | chr1.3:48068010-48068029 | None:intergenic | 40.0% |
| !! | CTGCACCTCTTTAAGATGTT+TGG | + | chr1.3:48069142-48069161 | None:intergenic | 40.0% |
| !! | GCACTGATGTTTTGTTGAAG+AGG | + | chr1.3:48069170-48069189 | None:intergenic | 40.0% |
| !! | TATTTCTGGCCAAGAATTCG+GGG | - | chr1.3:48068433-48068452 | MS.gene068515:intron | 40.0% |
| ACACCCCCTTACACAAAATG+AGG | - | chr1.3:48067392-48067411 | MS.gene068515:intron | 45.0% | |
| ACGACCAGATATTGCAACGA+TGG | + | chr1.3:48067740-48067759 | None:intergenic | 45.0% | |
| AGGGGATGAGAGAGTAAAAG+AGG | + | chr1.3:48067990-48068009 | None:intergenic | 45.0% | |
| AGTGTAGTGCCATAGCCATA+AGG | - | chr1.3:48068256-48068275 | MS.gene068515:intron | 45.0% | |
| CACCCCCTTACACAAAATGA+GGG | - | chr1.3:48067393-48067412 | MS.gene068515:intron | 45.0% | |
| CACTTCTATCCATCGTTCAC+AGG | - | chr1.3:48068099-48068118 | MS.gene068515:intron | 45.0% | |
| CGACCAGATATTGCAACGAT+GGG | + | chr1.3:48067739-48067758 | None:intergenic | 45.0% | |
| CTCTCTACTTGTAGCTACCA+GGG | + | chr1.3:48068629-48068648 | None:intergenic | 45.0% | |
| CTGTGAACGATGGATAGAAG+TGG | + | chr1.3:48068101-48068120 | None:intergenic | 45.0% | |
| GATCCCATCGTTGCAATATC+TGG | - | chr1.3:48067733-48067752 | MS.gene068515:intron | 45.0% | |
| GCCAAAAATCCTAAGAAGCC+CGG | + | chr1.3:48068587-48068606 | None:intergenic | 45.0% | |
| GGAACAGAGAATATCGTGCA+AGG | + | chr1.3:48067049-48067068 | None:intergenic | 45.0% | |
| GGGGATTCTCTTGCTCATTT+AGG | - | chr1.3:48067576-48067595 | MS.gene068515:intron | 45.0% | |
| TCGTGACCTGATTCCTGTTA+TGG | - | chr1.3:48067756-48067775 | MS.gene068515:intron | 45.0% | |
| TCTACATACCCTTTCACACC+GGG | - | chr1.3:48067187-48067206 | MS.gene068515:CDS | 45.0% | |
| TCTCTACTTGTAGCTACCAG+GGG | + | chr1.3:48068628-48068647 | None:intergenic | 45.0% | |
| TGGAGCATGGAAAATGTTGG+TGG | - | chr1.3:48067219-48067238 | MS.gene068515:CDS | 45.0% | |
| TGGCAAAGCAGTGTTAACTG+TGG | + | chr1.3:48067514-48067533 | None:intergenic | 45.0% | |
| TGTCAGACAGCCTATCAACT+AGG | + | chr1.3:48068044-48068063 | None:intergenic | 45.0% | |
| ! | AACGGCCCTCATTTTGTGTA+AGG | + | chr1.3:48067401-48067420 | None:intergenic | 45.0% |
| ! | ACCAACATTTTCCATGCTCC+AGG | + | chr1.3:48067220-48067239 | None:intergenic | 45.0% |
| ! | ACGGCCCTCATTTTGTGTAA+GGG | + | chr1.3:48067400-48067419 | None:intergenic | 45.0% |
| ! | ACTGAAAGCACGAGGAAAGA+AGG | + | chr1.3:48067845-48067864 | None:intergenic | 45.0% |
| ! | GAGTCTTGGCAGAGTCTTTT+TGG | - | chr1.3:48068162-48068181 | MS.gene068515:intron | 45.0% |
| ! | TGCTCTGGTAATGTTTCGAC+AGG | - | chr1.3:48067702-48067721 | MS.gene068515:intron | 45.0% |
| !! | ATTTCTGGCCAAGAATTCGG+GGG | - | chr1.3:48068434-48068453 | MS.gene068515:intron | 45.0% |
| !! | GCTACAAGTAGAGAGCATCA+AGG | - | chr1.3:48068634-48068653 | MS.gene068515:intron | 45.0% |
| ACCCTTTCACACCGGGTTAT+AGG | - | chr1.3:48067194-48067213 | MS.gene068515:CDS | 50.0% | |
| AGTCTTTGGGCTGCCTTCAT+TGG | + | chr1.3:48067491-48067510 | None:intergenic | 50.0% | |
| CAATATTGCTGAGCTTCCCC+TGG | - | chr1.3:48068609-48068628 | MS.gene068515:intron | 50.0% | |
| CGCTGTTCTCTTGCATAGAG+AGG | - | chr1.3:48068819-48068838 | MS.gene068515:intron | 50.0% | |
| CTGCCTTCATTGGGTGTAAG+GGG | + | chr1.3:48067481-48067500 | None:intergenic | 50.0% | |
| GCAGCAGCTCGTGAAAGTAA+CGG | + | chr1.3:48066914-48066933 | None:intergenic | 50.0% | |
| GCCTATAACCCGGTGTGAAA+GGG | + | chr1.3:48067198-48067217 | None:intergenic | 50.0% | |
| GCCTGGAGCATGGAAAATGT+TGG | - | chr1.3:48067216-48067235 | MS.gene068515:CDS | 50.0% | |
| GCTCTCTACTTGTAGCTACC+AGG | + | chr1.3:48068630-48068649 | None:intergenic | 50.0% | |
| GCTGCCTTCATTGGGTGTAA+GGG | + | chr1.3:48067482-48067501 | None:intergenic | 50.0% | |
| GGGGAAGCTCAGCAATATTG+CGG | + | chr1.3:48068609-48068628 | None:intergenic | 50.0% | |
| GTCTTTGGGCTGCCTTCATT+GGG | + | chr1.3:48067490-48067509 | None:intergenic | 50.0% | |
| TAGTATCTGCCGGGCTTCTT+AGG | - | chr1.3:48068575-48068594 | MS.gene068515:intron | 50.0% | |
| TCGTGCTTTCAGTTTCCCAG+TGG | - | chr1.3:48067852-48067871 | MS.gene068515:intron | 50.0% | |
| TGCCTTCATTGGGTGTAAGG+GGG | + | chr1.3:48067480-48067499 | None:intergenic | 50.0% | |
| ! | ACTGGGAAACTGAAAGCACG+AGG | + | chr1.3:48067853-48067872 | None:intergenic | 50.0% |
| ! | AGTGCTGGAAAAGATGGTGC+AGG | - | chr1.3:48069185-48069204 | MS.gene068515:CDS | 50.0% |
| ! | CGGCCCTCATTTTGTGTAAG+GGG | + | chr1.3:48067399-48067418 | None:intergenic | 50.0% |
| ! | GCCGGGCTTCTTAGGATTTT+TGG | - | chr1.3:48068583-48068602 | MS.gene068515:intron | 50.0% |
| ! | GGCCCTCATTTTGTGTAAGG+GGG | + | chr1.3:48067398-48067417 | None:intergenic | 50.0% |
| !! | AAATGTTGGTGGCCCAACGA+TGG | - | chr1.3:48067230-48067249 | MS.gene068515:CDS | 50.0% |
| CACCCCCTTACACCCAATGA+AGG | - | chr1.3:48067475-48067494 | MS.gene068515:CDS | 55.0% | |
| CAGGGGATGCAGAGTCCATT+TGG | - | chr1.3:48068885-48068904 | MS.gene068515:intron | 55.0% | |
| CATGCTCCAGGCCTATAACC+CGG | + | chr1.3:48067208-48067227 | None:intergenic | 55.0% | |
| GGCCTATAACCCGGTGTGAA+AGG | + | chr1.3:48067199-48067218 | None:intergenic | 55.0% | |
| GGCTGCCTTCATTGGGTGTA+AGG | + | chr1.3:48067483-48067502 | None:intergenic | 55.0% | |
| TTCACACCGGGTTATAGGCC+TGG | - | chr1.3:48067199-48067218 | MS.gene068515:CDS | 55.0% | |
| ACTCTGCATCCCCTGCAGCA+GGG | + | chr1.3:48068880-48068899 | None:intergenic | 60.0% | |
| CGGGTTATAGGCCTGGAGCA+TGG | - | chr1.3:48067206-48067225 | MS.gene068515:CDS | 60.0% | |
| AAGCTGGTGCTCCCTGCTGC+AGG | - | chr1.3:48068866-48068885 | MS.gene068515:intron | 65.0% | |
| AGCTGGTGCTCCCTGCTGCA+GGG | - | chr1.3:48068867-48068886 | MS.gene068515:intron | 65.0% | |
| GACTCTGCATCCCCTGCAGC+AGG | + | chr1.3:48068881-48068900 | None:intergenic | 65.0% | |
| GCTGGTGCTCCCTGCTGCAG+GGG | - | chr1.3:48068868-48068887 | MS.gene068515:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 48066852 | 48069218 | 48066852 | ID=MS.gene068515 |
| chr1.3 | mRNA | 48066852 | 48069218 | 48066852 | ID=MS.gene068515.t1;Parent=MS.gene068515 |
| chr1.3 | exon | 48069127 | 48069218 | 48069127 | ID=MS.gene068515.t1.exon1;Parent=MS.gene068515.t1 |
| chr1.3 | CDS | 48069127 | 48069218 | 48069127 | ID=cds.MS.gene068515.t1;Parent=MS.gene068515.t1 |
| chr1.3 | exon | 48068285 | 48068346 | 48068285 | ID=MS.gene068515.t1.exon2;Parent=MS.gene068515.t1 |
| chr1.3 | CDS | 48068285 | 48068346 | 48068285 | ID=cds.MS.gene068515.t1;Parent=MS.gene068515.t1 |
| chr1.3 | exon | 48067587 | 48067643 | 48067587 | ID=MS.gene068515.t1.exon3;Parent=MS.gene068515.t1 |
| chr1.3 | CDS | 48067587 | 48067643 | 48067587 | ID=cds.MS.gene068515.t1;Parent=MS.gene068515.t1 |
| chr1.3 | exon | 48067410 | 48067503 | 48067410 | ID=MS.gene068515.t1.exon4;Parent=MS.gene068515.t1 |
| chr1.3 | CDS | 48067410 | 48067503 | 48067410 | ID=cds.MS.gene068515.t1;Parent=MS.gene068515.t1 |
| chr1.3 | exon | 48067124 | 48067264 | 48067124 | ID=MS.gene068515.t1.exon5;Parent=MS.gene068515.t1 |
| chr1.3 | CDS | 48067124 | 48067264 | 48067124 | ID=cds.MS.gene068515.t1;Parent=MS.gene068515.t1 |
| chr1.3 | exon | 48066852 | 48066935 | 48066852 | ID=MS.gene068515.t1.exon6;Parent=MS.gene068515.t1 |
| chr1.3 | CDS | 48066852 | 48066935 | 48066852 | ID=cds.MS.gene068515.t1;Parent=MS.gene068515.t1 |
| Gene Sequence |
| Protein sequence |
