AlfalfaGEDB | MS.gene050905

M. sativa cultivar XinJiangDaYe / MS.gene050905

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050905.t1	XP_003626205.2	93.8	275	16	1	1	274	1	275	5.30E-149	537.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050905.t1	G7KXI4	93.8	275	16	1	1	274	1	275	3.8e-149	537.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049343	MS.gene050905	-0.804787	1.83E-49	-1.69E-46
MS.gene050905	MS.gene052519	-0.816222	6.18E-52	-1.69E-46
MS.gene050905	MS.gene053006	-0.808144	3.58E-50	-1.69E-46
MS.gene050905	MS.gene053145	-0.80793	3.97E-50	-1.69E-46
MS.gene050905	MS.gene054559	-0.801366	9.31E-49	-1.69E-46
MS.gene050905	MS.gene055818	-0.820199	7.78E-53	-1.69E-46
MS.gene050905	MS.gene057060	-0.812665	3.78E-51	-1.69E-46
MS.gene050905	MS.gene057208	-0.800051	1.73E-48	-1.69E-46
MS.gene050905	MS.gene05979	-0.803974	2.70E-49	-1.69E-46
MS.gene050905	MS.gene060634	0.801293	9.64E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050905.t1	MTR_7g112650	93.455	275	17	1	1	274	1	275	0.0	508
MS.gene050905.t1	MTR_4g015110	94.286	35	2	0	326	360	1	35	8.14e-13	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050905.t1	AT5G27710	60.364	275	95	4	9	274	10	279	4.28e-115	338
MS.gene050905.t1	AT5G27710	58.436	243	87	4	9	242	10	247	5.82e-96	286

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Find 124 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGAAGATGATGTAA+CGG	0.564122	7.1:-3309319	None:intergenic
AAAAGGGGACAAGGAATTTG+AGG	0.529207	7.1:-3309485	None:intergenic
AAAATGTTTCCGTACAACAT+GGG	0.599086	7.1:+3310218	MS.gene050905:CDS
AACCGATTTGATTTATTCCA+TGG	0.434310	7.1:+3310034	MS.gene050905:CDS
AACTAACTGGGATGATAGTG+GGG	0.647235	7.1:-3309686	None:intergenic
AAGACTGAAGGGTATCTCAT+TGG	0.458926	7.1:-3309270	None:intergenic
AAGTCGGAGGGAGTGGCTTT+TGG	0.287475	7.1:-3309390	None:intergenic
AATGTGGCAGGTACCCGATG+TGG	0.622239	7.1:+3309781	MS.gene050905:intron
ACCAAATCTTGGGTGGCACC+AGG	0.557895	7.1:+3311296	MS.gene050905:CDS
ACCAAGTCTTCCAGAGTCTA+TGG	0.333174	7.1:-3310071	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGTTTCCGTACAACA+TGG	+	chr7.1:3310217-3310236	MS.gene050905:CDS	30.0%
AAAATGTTTCCGTACAACAT+GGG	+	chr7.1:3310218-3310237	MS.gene050905:CDS	30.0%
AACTTGGATATTATGAGGTA+TGG	-	chr7.1:3310913-3310932	None:intergenic	30.0%
ACTTGGATATTATGAGGTAT+GGG	-	chr7.1:3310912-3310931	None:intergenic	30.0%
CTTTGGATCTCAATTTCAAT+TGG	-	chr7.1:3312144-3312163	None:intergenic	30.0%
GACAGTTACAAATTACAATG+TGG	+	chr7.1:3309765-3309784	MS.gene050905:intron	30.0%
GTAAGTTTCATTAGAGAGAA+AGG	+	chr7.1:3310470-3310489	MS.gene050905:intron	30.0%
GTCCATGGAATAAATCAAAT+CGG	-	chr7.1:3310039-3310058	None:intergenic	30.0%
TAACACTAATTTCAACGATG+TGG	+	chr7.1:3312188-3312207	MS.gene050905:CDS	30.0%
TAACAGAACATCTTAAGATG+TGG	-	chr7.1:3310276-3310295	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	3309273	3312734	3309273	ID=MS.gene050905
chr7.1	mRNA	3309273	3312734	3309273	ID=MS.gene050905.t1;Parent=MS.gene050905
chr7.1	exon	3309273	3309701	3309273	ID=MS.gene050905.t1.exon1;Parent=MS.gene050905.t1
chr7.1	CDS	3309273	3309701	3309273	ID=cds.MS.gene050905.t1;Parent=MS.gene050905.t1
chr7.1	exon	3309791	3309868	3309791	ID=MS.gene050905.t1.exon2;Parent=MS.gene050905.t1
chr7.1	CDS	3309791	3309868	3309791	ID=cds.MS.gene050905.t1;Parent=MS.gene050905.t1
chr7.1	exon	3309956	3310098	3309956	ID=MS.gene050905.t1.exon3;Parent=MS.gene050905.t1
chr7.1	CDS	3309956	3310098	3309956	ID=cds.MS.gene050905.t1;Parent=MS.gene050905.t1
chr7.1	exon	3310184	3310254	3310184	ID=MS.gene050905.t1.exon4;Parent=MS.gene050905.t1
chr7.1	CDS	3310184	3310254	3310184	ID=cds.MS.gene050905.t1;Parent=MS.gene050905.t1
chr7.1	exon	3311222	3311317	3311222	ID=MS.gene050905.t1.exon5;Parent=MS.gene050905.t1
chr7.1	CDS	3311222	3311317	3311222	ID=cds.MS.gene050905.t1;Parent=MS.gene050905.t1
chr7.1	exon	3312124	3312209	3312124	ID=MS.gene050905.t1.exon6;Parent=MS.gene050905.t1
chr7.1	CDS	3312124	3312209	3312124	ID=cds.MS.gene050905.t1;Parent=MS.gene050905.t1
chr7.1	exon	3312546	3312734	3312546	ID=MS.gene050905.t1.exon7;Parent=MS.gene050905.t1
chr7.1	CDS	3312546	3312734	3312546	ID=cds.MS.gene050905.t1;Parent=MS.gene050905.t1

Gene Sequence

>MS.gene050905

ATGAGATACCCTTCAGTCTTCGGATTGGCACTATTCCTCTCATTTTCCGTTACATCATCTTCATCTTTTCCACGAACACCATTCTTTCCTCTTCCATCTTCCTCCATCGTCTCAATCCCAAAAGCCACTCCCTCCGACTTATTATCTCTTCTGGGTCCCACTCCTCGTTCCAAACTCGTCAATCCCGTCGTAGCACGCCAACTCAAATCATGCCTCAAATTCCTTGTCCCCTTTTCTCCAACGGTTACCGATTCTCCTCCTCGTCACCGGAAATTGGGCCGGACCGAACTCACCGGTTCGAACAGGAGAAATGATAACGATATGATTTGGTGGCCGCCTGAGCCCGTTTTGGAACTTGCTCGCCTCGCTGTTGATTCTGGTGGTGACCCTGCCGCCATTCATCGCGCTCTTGACCCCACTATCATCCCAGTTAGTTACAAAATTGTTTGACAGTTTCAATTTCAACTTTTGAGGATTTATTCCGCTCATTATGACAGTTACAAATTACAATGTGGCAGGTACCCGATGTGGAAGGATCAAGCGATGACCGGTGCCAGCTCACCAGAACTCCCTATGGAAGACGGTTTATTTCTGAGGTTTGTTCTCAACAGTCGATATTGAATCCCAAGGGTGAAAGAGAGAGTACTCATAGTGATGCTGAATTGTTCTTTTTCTGATTGCAGGAATTGAACATGTATATGCAATTTTTGTTTGAACTCATTGTTGATCGAGGTCCTTCTATTGGGTTTGATGTTGCCTTGAACCGATTTGATTTATTCCATGGACATCTCTTTCTATCCATAGACTCTGGAAGACTTGGTATCTTGTATGTTATAGTTAGTGAAATGTCTATCTTTGTTGAAATGTCTATCTTTGTTGAGTTACGAATGCAACTGTTCTACATTTTGCAGATTCCATGCAAGGGAATACCCGGCATATGATAAAAAAATGTTTCCGTACAACATGGGTTTTTGTCAGAGAGGTACATTGCTATATATCACCACATCTTAAGATGTTCTGTTATGTATAGTTCGATTTTCTATCATCTCTATTAAGCTTTCAAGTTGTAGGTCATGCTTTGGAAATTTTGTACTGTTATTTCTCTGGATCTTGATGTTGGGCTTTATAACTTATGTAGGCATTTGATGTGAGAAATGGATCCTCTGCCTTAAGTGGAGGAAATTTACGGTGACTATAGTAAGTTTCATTAGAGAGAAAGGTGAGAGAAGATAAGAGTGAGTCATTTAAGAGAGATAAAGAGAGAGCCACAGTGTGTCGGTGTCTTTGCCTTAAAATTAGAGGATCGTATCTCACTTGTTTGTGAGTGGACATGAGACGGGGAGTGATGGAGGCCTGGTTTTTTATAACTAGAAAGAGGAGGAGTGGATTCCTCAATGATGAATGCAACTCACAAATCTTTGAGGGCCAGCAACCCCCCTGCCACAAGGATTCGATTTTCATCGCGCCCTATCTTCCCTTCCTGTTATTTATGTAAGAAATAATCTACCTCTAACTATGTCAGTCATAACTAATCCTAACCAATATCATAAGCATGCTAGAACCAGTGAAACCCTCCAAAAAGCTAGGTGTCAAGAGGGAACAATCAAGTCACTTAAATATTGCACCTAGCTAGCACCCCATACCTCATAATATCCAAGTTCCGATCACAAACTCCGTGCCATAAGCCCTAATTCTCTTAAAAAAAGAGTACCTGTGTTACCTCTTCTAACTATCTCAGACAAAACCAATCCTAACTAATTACTAATTATTAACCAACAAACTTTAAATCCCTCAACTAACATACAAGAGTCCCTGATATGAGAGAGAACATAACTTTATGTTTATAATGTTTAGATGTTCTTGTAAATGTCAAAAACATAAATGTTTGATTCTCTTCTCTTTTGAGTCCCAACTTTTAAAGTGGTGTTTGGTTTTATGAATCCTTTCAGGGTCCAATGTGACATATGATGATTCAATGAACTTGCGAAATATTCTCTGGCTGGCTCCTTTTCCCGACAATTCCACCAAATCTTGGGTGGCACCAGGTACCCTCAGTAAAGTTATCATAATTGCATAAAGTTTGAACGCTTTTCACATGATACATAAACATACTCTTGAGTTTCACACTAAATTTTATGAATAATAATTGGATCAACCTATTCATCATGCAAAGAGTTAATAATCTGTGCAAGATTTTTTTTAGTATTATGATTTCCTTTTGAAAATTTTAAACTGATACCTCAGATATATGAGAGCCTCAAGTATGGTGGTAAGCAATGTTTTCTGATGTTGATTTTTCCTTTCAGTTTTGGATTAGATATTGTGGCATTTGATAACTTGGAATATATATATATATATATATAGAGGATGTATAATATGAGAATGAGTATCTTATATGAGAATGGTGAGAATAATTATCAACCATTTGATTAAAAGCTAATGGTTGAGATTTAAATGCTCAATTAAAACATTACCATATTCTATCAATTCTCATAAACTCATTACACCCTCCATCTTCTCCAACAACGCCATTGCTCATGTCTACCCACCACCATTTTTGTTCATGTCACTATTCATCACCATCAACAAAACAAGATCCGAATATTTTAATTGATAATAAACCAGAAATTATGCTTCTTCTTTTTTCTTTTTCATTTTTTGTAAAATAATTGTTTCAGGTCTTTTTTGCAAAATAATTGGTACCGGTAACGTTCAATTTACAATAAATCAGAAGCATTGATCTAAAAGCTAAAGCAATATTTTTTTACAAATTCAAATACATATCAATTGAGTAAATTGGATTTGGAAATTAAATGCCATACTTCTCAATAGTTTCAATTTCATAGCACAGGAATAGACATGCTTGAACCAATTGAAATTGAGATCCAAAGTTCCATTACAAAAGTAGATGAAGGTAACACTAATTTCAACGATGTGGTGAATGTGAATTGCAAGTGTGGAACACACAGAGAAGGAACAAATTGATGATGGTGGGTTGGAGAAGATGGAGGGTGTAATGAGTTTATGAGAATTGATAGAATATGGTAATGTTTTAATTGAGCATTTAAATCTCAACCATCAACTTTTAATCAAATGGTTGATAATTATTCTCACCATTCTCATATAAGATACTCATTCTCATATTATACATCCTCTATATATATATATATATATATGAGTCAGGATCCGTTGACACCAAATATTAACCGTCGATCTCTTTTGATCTAAGGGATTATATTTGTTCATTTAAAATTGCATGTAAACTACTCTCAGAGGATTGATTATCCTTCTGTTCCGCCGCCGCCGCAAAGACCACTCGTCACCGTCCACACACTCTACTCCGACATGGCCACGGATTCATCCACCACCCTCCCAATCCCCGATGTAATGCGAGTTTCAATCAGTCTCGATATCGTCATCACACATTTTGCAGACAACAATGAAATTTTATTTGATCCATAG

Protein sequence

>MS.gene050905.t1

MRYPSVFGLALFLSFSVTSSSSFPRTPFFPLPSSSIVSIPKATPSDLLSLLGPTPRSKLVNPVVARQLKSCLKFLVPFSPTVTDSPPRHRKLGRTELTGSNRRNDNDMIWWPPEPVLELARLAVDSGGDPAAIHRALDPTIIPVPDVEGSSDDRCQLTRTPYGRRFISEELNMYMQFLFELIVDRGPSIGFDVALNRFDLFHGHLFLSIDSGRLGILFHAREYPAYDKKMFPYNMGFCQRGSNVTYDDSMNLRNILWLAPFPDNSTKSWVAPGIDMLEPIEIEIQSSITKVDEGNTNFNDVRIDYPSVPPPPQRPLVTVHTLYSDMATDSSTTLPIPDVMRVSISLDIVITHFADNNEILFDP