Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068818.t1 | RHN40996.1 | 89.2 | 565 | 61 | 0 | 1 | 565 | 29 | 593 | 2.60E-299 | 1037.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068818.t1 | O81832 | 42.3 | 568 | 278 | 5 | 2 | 565 | 30 | 551 | 6.5e-134 | 479.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068818.t1 | A0A396GIN5 | 89.2 | 565 | 61 | 0 | 1 | 565 | 29 | 593 | 1.9e-299 | 1037.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050584 | MS.gene068818 | 0.809115 | 2.22E-50 | -1.69E-46 |
| MS.gene050585 | MS.gene068818 | 0.801559 | 8.50E-49 | -1.69E-46 |
| MS.gene051789 | MS.gene068818 | 0.806063 | 9.87E-50 | -1.69E-46 |
| MS.gene052142 | MS.gene068818 | 0.845588 | 3.70E-59 | -1.69E-46 |
| MS.gene053383 | MS.gene068818 | 0.809043 | 2.30E-50 | -1.69E-46 |
| MS.gene05456 | MS.gene068818 | 0.805514 | 1.29E-49 | -1.69E-46 |
| MS.gene055359 | MS.gene068818 | 0.805936 | 1.05E-49 | -1.69E-46 |
| MS.gene059006 | MS.gene068818 | 0.837581 | 4.78E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 125 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCAAAAGGTCGGTATT+TGG | 0.213689 | 8.4:-44866260 | MS.gene068818:CDS |
| CGTAATCTTGTGAAGCTTCT+TGG | 0.221757 | 8.4:-44864157 | MS.gene068818:CDS |
| CAGCTGTATGGGTGGCTAAC+AGG | 0.234630 | 8.4:-44866207 | MS.gene068818:CDS |
| TCTTCTTTGGTTTGGTGATC+TGG | 0.239790 | 8.4:-44865231 | MS.gene068818:CDS |
| GAGGTAGTGGCTGTCTTCTT+TGG | 0.266804 | 8.4:-44865244 | MS.gene068818:CDS |
| AGCTTAGACTACTTCATCTT+TGG | 0.273575 | 8.4:-44864079 | MS.gene068818:CDS |
| AAACTTGGGGAAGGTGGATT+TGG | 0.277862 | 8.4:-44864378 | MS.gene068818:CDS |
| CAGACATTAGTTTCGGCTAA+TGG | 0.287513 | 8.4:-44866313 | MS.gene068818:CDS |
| GTATATAGACTGTCCCTTAC+AGG | 0.322646 | 8.4:-44865659 | MS.gene068818:CDS |
| GCCACCCATACAGCTGTTAA+AGG | 0.329933 | 8.4:+44866214 | None:intergenic |
| GTCTTAAAACTCAATGAAAA+TGG | 0.332095 | 8.4:-44866157 | MS.gene068818:CDS |
| CTAGAATATTCTCCCTTTGC+TGG | 0.337960 | 8.4:+44865881 | None:intergenic |
| TATGATATATTCCATTGTTC+AGG | 0.346894 | 8.4:+44865467 | None:intergenic |
| CCTGCATAATAATATTTATA+AGG | 0.347834 | 8.4:-44864690 | MS.gene068818:CDS |
| ATAGTTGGCGTAATCACTAT+TGG | 0.349098 | 8.4:-44864727 | MS.gene068818:CDS |
| AATTCAAAAGGTCGGTATTT+GGG | 0.349133 | 8.4:-44866259 | MS.gene068818:CDS |
| TGGATTTGGACCAGTGTATA+AGG | 0.356224 | 8.4:-44864364 | MS.gene068818:intron |
| GTCCCTTACAGGAAATTTGC+AGG | 0.359636 | 8.4:-44865648 | MS.gene068818:CDS |
| GTGTACCGGTTATGCAAATA+TGG | 0.369533 | 8.4:-44865279 | MS.gene068818:CDS |
| TTTATTAGTGTTGATGTTCC+TGG | 0.370328 | 8.4:-44864778 | MS.gene068818:CDS |
| TTCAATAAATGCACAGCTCC+TGG | 0.374628 | 8.4:-44866059 | MS.gene068818:CDS |
| TATACTTGCCGTTTCTGAAA+TGG | 0.376599 | 8.4:+44864489 | None:intergenic |
| CCGAAAATTGAATTAGTTTG+CGG | 0.382876 | 8.4:-44865425 | MS.gene068818:CDS |
| ACCCCTTCATTATAACTACT+TGG | 0.384425 | 8.4:+44865834 | None:intergenic |
| AGTATATTCTAGATTGATAA+AGG | 0.391671 | 8.4:-44864472 | MS.gene068818:CDS |
| TTCCATCCAAGCTTCATTCC+CGG | 0.394401 | 8.4:+44865956 | None:intergenic |
| AGACATTAGTTTCGGCTAAT+GGG | 0.395824 | 8.4:-44866312 | MS.gene068818:CDS |
| AGTGGCTGTCTTCTTTGGTT+TGG | 0.396303 | 8.4:-44865239 | MS.gene068818:CDS |
| TCCGTGTGATACATTATTGC+CGG | 0.399384 | 8.4:-44865975 | MS.gene068818:CDS |
| CACTCGAATGTGTCGGATCA+AGG | 0.399769 | 8.4:-44864229 | MS.gene068818:CDS |
| GACAGCCACTACCTCCATTT+CGG | 0.402485 | 8.4:+44865252 | None:intergenic |
| GATATCCATATTTGCATAAC+CGG | 0.407283 | 8.4:+44865274 | None:intergenic |
| GAAGTAGTCTAAGCTCTTGT+TGG | 0.409184 | 8.4:+44864087 | None:intergenic |
| TAACACCTTTAACAGCTGTA+TGG | 0.416676 | 8.4:-44866219 | MS.gene068818:CDS |
| GCAAATATGGATATCCGAAA+TGG | 0.420721 | 8.4:-44865266 | MS.gene068818:CDS |
| GAAATTGGTTTCTTTAGTCC+TGG | 0.426995 | 8.4:-44866283 | MS.gene068818:CDS |
| CTTGGATGGAACTTAGTAAC+TGG | 0.430084 | 8.4:-44865944 | MS.gene068818:CDS |
| ATGCCTGCAAATTTCCTGTA+AGG | 0.434778 | 8.4:+44865645 | None:intergenic |
| TTTAGTCCTGGAAATTCAAA+AGG | 0.438874 | 8.4:-44866271 | MS.gene068818:CDS |
| AACAATGGAATATATCATAT+TGG | 0.444285 | 8.4:-44865463 | MS.gene068818:CDS |
| TGCTAATTCTATATGCAGTA+TGG | 0.445704 | 8.4:-44865540 | MS.gene068818:CDS |
| GAAGACTGTCTCTGATATCT+TGG | 0.445814 | 8.4:+44866090 | None:intergenic |
| TTTCTAGCACAAATAAACTT+GGG | 0.454039 | 8.4:-44864392 | MS.gene068818:CDS |
| CCCCTTCATTATAACTACTT+GGG | 0.459351 | 8.4:+44865835 | None:intergenic |
| CCTTATAAATATTATTATGC+AGG | 0.459635 | 8.4:+44864690 | None:intergenic |
| ACACAAGATTTCCCGTGTCC+AGG | 0.460086 | 8.4:+44866041 | None:intergenic |
| TTCCATTGTTCAGGAAACTT+AGG | 0.468995 | 8.4:+44865476 | None:intergenic |
| CGGCTGATGCGGATCATAGT+TGG | 0.469694 | 8.4:-44864742 | MS.gene068818:CDS |
| AGACGGCCAGACATTAGTTT+CGG | 0.472638 | 8.4:-44866320 | MS.gene068818:CDS |
| AAGTAGTCTAAGCTCTTGTT+GGG | 0.480960 | 8.4:+44864088 | None:intergenic |
| AAACTAATGTCTGGCCGTCT+CGG | 0.483724 | 8.4:+44866323 | None:intergenic |
| ACGGTGCAAACAGCACTGTT+TGG | 0.485860 | 8.4:-44866117 | MS.gene068818:CDS |
| AGCTGTATGGGTGGCTAACA+GGG | 0.491961 | 8.4:-44866206 | MS.gene068818:CDS |
| GTCTTGCACCATTTCAGAAA+CGG | 0.493618 | 8.4:-44864497 | MS.gene068818:CDS |
| CAAGAAGCTTCACAAGATTA+CGG | 0.493797 | 8.4:+44864158 | None:intergenic |
| TAAAATTGAGAGTAGGATCA+TGG | 0.494154 | 8.4:-44865805 | MS.gene068818:CDS |
| AACACCTTTAACAGCTGTAT+GGG | 0.495350 | 8.4:-44866218 | MS.gene068818:CDS |
| GAAATTTGCAGGCATTATGT+TGG | 0.496963 | 8.4:-44865637 | MS.gene068818:CDS |
| CCGTGTGATACATTATTGCC+GGG | 0.499101 | 8.4:-44865974 | MS.gene068818:CDS |
| TATGAGAGTATTCTCCCAAT+GGG | 0.501849 | 8.4:-44865204 | MS.gene068818:CDS |
| TACAACGATGAAGAAGTGTC+TGG | 0.506058 | 8.4:+44865356 | None:intergenic |
| CCCCAAGTAGTTATAATGAA+GGG | 0.513028 | 8.4:-44865836 | MS.gene068818:CDS |
| AGAGTCCCTTCTTCAGAACT+AGG | 0.515155 | 8.4:-44865164 | MS.gene068818:intron |
| TGTGCTAGAAAAGTTATTAG+CGG | 0.516893 | 8.4:+44864404 | None:intergenic |
| GGACAAGTCTTTCAAGCTCA+AGG | 0.519070 | 8.4:-44865616 | MS.gene068818:CDS |
| TGGAATATATCATATTGGTC+TGG | 0.520979 | 8.4:-44865458 | MS.gene068818:CDS |
| TGCCGGGAATGAAGCTTGGA+TGG | 0.521867 | 8.4:-44865958 | MS.gene068818:CDS |
| TTATTGCCGGGAATGAAGCT+TGG | 0.522313 | 8.4:-44865962 | MS.gene068818:CDS |
| GGCTATATTACCTTATACAC+TGG | 0.523110 | 8.4:+44864354 | None:intergenic |
| TTTGGACCTAGTTCTGAAGA+AGG | 0.528695 | 8.4:+44865158 | None:intergenic |
| TCCCCAAGTAGTTATAATGA+AGG | 0.528791 | 8.4:-44865837 | MS.gene068818:CDS |
| GGAAGGATGTAGCCATAAAA+CGG | 0.529345 | 8.4:-44864252 | MS.gene068818:CDS |
| GAATGTGTCGGATCAAGGAT+TGG | 0.531044 | 8.4:-44864224 | MS.gene068818:CDS |
| TTCAGGGAACACTCGTAGAC+GGG | 0.534055 | 8.4:-44864273 | MS.gene068818:intron |
| GATATCCGAAATGGAGGTAG+TGG | 0.538550 | 8.4:-44865257 | MS.gene068818:CDS |
| TTCCTAAGTTTCCTGAACAA+TGG | 0.542478 | 8.4:-44865478 | MS.gene068818:CDS |
| GTCCTGGAAATTCAAAAGGT+CGG | 0.543779 | 8.4:-44866267 | MS.gene068818:CDS |
| ACAAATAAACTTGGGGAAGG+TGG | 0.546489 | 8.4:-44864384 | MS.gene068818:CDS |
| AAGGTCGGTATTTGGGTATG+TGG | 0.548112 | 8.4:-44866252 | MS.gene068818:CDS |
| AGTTATTAGCGGCTTTAACA+AGG | 0.554185 | 8.4:+44864415 | None:intergenic |
| CATTAGCCGAAACTAATGTC+TGG | 0.554912 | 8.4:+44866314 | None:intergenic |
| AGTACAGATGATCCAGCAAA+GGG | 0.567938 | 8.4:-44865893 | MS.gene068818:CDS |
| CCCTTCATTATAACTACTTG+GGG | 0.568368 | 8.4:+44865836 | None:intergenic |
| AATTCTATATGCAGTATGGA+TGG | 0.569579 | 8.4:-44865536 | MS.gene068818:CDS |
| AAATGCACAGCTCCTGGACA+CGG | 0.577657 | 8.4:-44866053 | MS.gene068818:CDS |
| TTCTAGCACAAATAAACTTG+GGG | 0.577749 | 8.4:-44864391 | MS.gene068818:CDS |
| TGCCTGCAAATTTCCTGTAA+GGG | 0.579246 | 8.4:+44865646 | None:intergenic |
| ACCTTTAACAGCTGTATGGG+TGG | 0.582306 | 8.4:-44866215 | MS.gene068818:CDS |
| CTACTTGGGGATATCCTCTA+CGG | 0.588136 | 8.4:+44865849 | None:intergenic |
| TGCGGAAACAACAACACAAG+TGG | 0.588871 | 8.4:-44865407 | MS.gene068818:CDS |
| ATTCAGGGAACACTCGTAGA+CGG | 0.588942 | 8.4:-44864274 | MS.gene068818:intron |
| TGGTTGCTGCATTCATAGAG+AGG | 0.592616 | 8.4:-44864137 | MS.gene068818:CDS |
| GTCTCGGATAGATTGATTGA+CGG | 0.592995 | 8.4:+44866339 | None:intergenic |
| ATATGAGAGTATTCTCCCAA+TGG | 0.595776 | 8.4:-44865205 | MS.gene068818:CDS |
| AATGCACAGCTCCTGGACAC+GGG | 0.596822 | 8.4:-44866052 | MS.gene068818:CDS |
| TTGGACCTAGTTCTGAAGAA+GGG | 0.599091 | 8.4:+44865159 | None:intergenic |
| CCCGGCAATAATGTATCACA+CGG | 0.600114 | 8.4:+44865974 | None:intergenic |
| AAGTACAGATGATCCAGCAA+AGG | 0.601611 | 8.4:-44865894 | MS.gene068818:CDS |
| CCCAAGTAGTTATAATGAAG+GGG | 0.613330 | 8.4:-44865835 | MS.gene068818:CDS |
| GTCAATCAATCTATCCGAGA+CGG | 0.613758 | 8.4:-44866337 | MS.gene068818:CDS |
| AGCACAAATAAACTTGGGGA+AGG | 0.614972 | 8.4:-44864387 | MS.gene068818:CDS |
| ATCACATGAATCTTCCGCGC+CGG | 0.616902 | 8.4:+44865580 | None:intergenic |
| TGCACATTTCAGTGGCACCA+AGG | 0.625960 | 8.4:-44864527 | MS.gene068818:intron |
| TAGATTGATAAAGGAAGACA+TGG | 0.629420 | 8.4:-44864463 | MS.gene068818:CDS |
| ATAATAATATTTATAAGGAG+AGG | 0.633849 | 8.4:-44864685 | MS.gene068818:intron |
| GGTGGCTAACAGGGAAACAC+CGG | 0.636471 | 8.4:-44866197 | MS.gene068818:CDS |
| GGGAACACTCGTAGACGGGA+AGG | 0.636510 | 8.4:-44864269 | MS.gene068818:CDS |
| TAACAAGACTATGAACCTTG+TGG | 0.636694 | 8.4:-44865333 | MS.gene068818:CDS |
| GGTGCAAGACGATATAACCT+TGG | 0.637463 | 8.4:+44864510 | None:intergenic |
| AATATGGATATCCGAAATGG+AGG | 0.640945 | 8.4:-44865263 | MS.gene068818:CDS |
| TTGAGAGTAGGATCATGGAA+TGG | 0.649559 | 8.4:-44865800 | MS.gene068818:CDS |
| TAAACAAGTTTCAATCATCG+TGG | 0.651455 | 8.4:-44865919 | MS.gene068818:CDS |
| ACACCGGTGCAAAATAACTC+AGG | 0.651789 | 8.4:-44866181 | MS.gene068818:CDS |
| TGTGTCGGATCAAGGATTGG+AGG | 0.653841 | 8.4:-44864221 | MS.gene068818:CDS |
| GGTGTTCTTGTGATTCTCAA+CGG | 0.661600 | 8.4:-44866136 | MS.gene068818:CDS |
| TCTAGTGGTGTTGACCGTAG+AGG | 0.667062 | 8.4:-44865863 | MS.gene068818:CDS |
| AATATATCATATTGGTCTGG+TGG | 0.668832 | 8.4:-44865455 | MS.gene068818:CDS |
| AAAACGGCACTCGAATGTGT+CGG | 0.669592 | 8.4:-44864236 | MS.gene068818:CDS |
| TCAAGGATAGTTATCTACAC+CGG | 0.673505 | 8.4:-44865599 | MS.gene068818:CDS |
| GCAAAGGGAGAATATTCTAG+TGG | 0.675778 | 8.4:-44865878 | MS.gene068818:CDS |
| ATGAGAGTATTCTCCCAATG+GGG | 0.681015 | 8.4:-44865203 | MS.gene068818:CDS |
| TCCGCGATAAAATTGAGAGT+AGG | 0.686792 | 8.4:-44865812 | MS.gene068818:CDS |
| TGAGAGTATTCTCCCAATGG+GGG | 0.690851 | 8.4:-44865202 | MS.gene068818:CDS |
| TGTGATAATTATGCAATGTG+TGG | 0.702751 | 8.4:-44865563 | MS.gene068818:CDS |
| GATAGTTATCTACACCGGCG+CGG | 0.770868 | 8.4:-44865594 | MS.gene068818:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACAAAAATTTATTGAAAA+AGG | + | chr8.4:44866097-44866116 | None:intergenic | 10.0% |
| !!! | TTTAAATTTTTTGAAAATTC+TGG | - | chr8.4:44865795-44865814 | MS.gene068818:CDS | 10.0% |
| !! | AAATTTATTGAAAAAGGTAA+AGG | + | chr8.4:44866091-44866110 | None:intergenic | 15.0% |
| !! | ATAATAATATTTATAAGGAG+AGG | - | chr8.4:44865720-44865739 | MS.gene068818:CDS | 15.0% |
| !!! | AATATTTGCTTCTTTTTTAA+TGG | + | chr8.4:44864659-44864678 | None:intergenic | 15.0% |
| !!! | ATTTTTGTTATCCTAAATTA+TGG | - | chr8.4:44866107-44866126 | MS.gene068818:CDS | 15.0% |
| !! | AACAATGGAATATATCATAT+TGG | - | chr8.4:44864942-44864961 | MS.gene068818:intron | 20.0% |
| !! | AATAAAAGTAGTGTAATTGT+TGG | + | chr8.4:44865461-44865480 | None:intergenic | 20.0% |
| !! | AGGATTGAAAAATCAAATAT+CGG | + | chr8.4:44865973-44865992 | None:intergenic | 20.0% |
| !! | AGTATATTCTAGATTGATAA+AGG | - | chr8.4:44865933-44865952 | MS.gene068818:CDS | 20.0% |
| !! | CCTGCATAATAATATTTATA+AGG | - | chr8.4:44865715-44865734 | MS.gene068818:CDS | 20.0% |
| !! | CCTTATAAATATTATTATGC+AGG | + | chr8.4:44865718-44865737 | None:intergenic | 20.0% |
| !!! | CTTTTTATGTTAATGACAAA+AGG | + | chr8.4:44865497-44865516 | None:intergenic | 20.0% |
| ! | AAAGACTGAATAATGAAGTT+TGG | + | chr8.4:44865268-44865287 | None:intergenic | 25.0% |
| ! | ATCCTAAATTATGGTATTCA+GGG | - | chr8.4:44866116-44866135 | MS.gene068818:CDS | 25.0% |
| ! | GAAATCTTGTGTTGAAAAAT+GGG | - | chr8.4:44864375-44864394 | MS.gene068818:CDS | 25.0% |
| ! | GTCTTAAAACTCAATGAAAA+TGG | - | chr8.4:44864248-44864267 | MS.gene068818:CDS | 25.0% |
| ! | TATCCTAAATTATGGTATTC+AGG | - | chr8.4:44866115-44866134 | MS.gene068818:CDS | 25.0% |
| ! | TATGATATATTCCATTGTTC+AGG | + | chr8.4:44864941-44864960 | None:intergenic | 25.0% |
| ! | TTACTACAACAAACAAGTTT+AGG | + | chr8.4:44865835-44865854 | None:intergenic | 25.0% |
| ! | TTTATGTTAATGACAAAAGG+AGG | + | chr8.4:44865494-44865513 | None:intergenic | 25.0% |
| !! | TTTCTAGCACAAATAAACTT+GGG | - | chr8.4:44866013-44866032 | MS.gene068818:CDS | 25.0% |
| !!! | TTCTTTTTTAATGGTTGTGT+TGG | + | chr8.4:44864650-44864669 | None:intergenic | 25.0% |
| !!! | TTTTCTAGCACAAATAAACT+TGG | - | chr8.4:44866012-44866031 | MS.gene068818:CDS | 25.0% |
| AAATTCAAAAGGTCGGTATT+TGG | - | chr8.4:44864145-44864164 | MS.gene068818:CDS | 30.0% | |
| AATTCAAAAGGTCGGTATTT+GGG | - | chr8.4:44864146-44864165 | MS.gene068818:CDS | 30.0% | |
| AATTCTATATGCAGTATGGA+TGG | - | chr8.4:44864869-44864888 | MS.gene068818:intron | 30.0% | |
| ATGAAAAATTGTTCGTGTAC+CGG | - | chr8.4:44865112-44865131 | MS.gene068818:intron | 30.0% | |
| GAACACTAGTTAGTTATAGT+TGG | + | chr8.4:44865522-44865541 | None:intergenic | 30.0% | |
| GATATCCATATTTGCATAAC+CGG | + | chr8.4:44865134-44865153 | None:intergenic | 30.0% | |
| GGAAATCTTGTGTTGAAAAA+TGG | - | chr8.4:44864374-44864393 | MS.gene068818:CDS | 30.0% | |
| GTAAAGGTCATCATTGAATA+CGG | + | chr8.4:44866075-44866094 | None:intergenic | 30.0% | |
| TAAAATTGAGAGTAGGATCA+TGG | - | chr8.4:44864600-44864619 | MS.gene068818:intron | 30.0% | |
| TAAACAAGTTTCAATCATCG+TGG | - | chr8.4:44864486-44864505 | MS.gene068818:CDS | 30.0% | |
| TAGATTGATAAAGGAAGACA+TGG | - | chr8.4:44865942-44865961 | MS.gene068818:CDS | 30.0% | |
| TATTATTCGAAAAGCGAGTA+GGG | - | chr8.4:44865339-44865358 | MS.gene068818:CDS | 30.0% | |
| TGCTAATTCTATATGCAGTA+TGG | - | chr8.4:44864865-44864884 | MS.gene068818:intron | 30.0% | |
| TGGAATATATCATATTGGTC+TGG | - | chr8.4:44864947-44864966 | MS.gene068818:intron | 30.0% | |
| TGTGATAATTATGCAATGTG+TGG | - | chr8.4:44864842-44864861 | MS.gene068818:intron | 30.0% | |
| TGTGCTAGAAAAGTTATTAG+CGG | + | chr8.4:44866004-44866023 | None:intergenic | 30.0% | |
| TTATTATTCGAAAAGCGAGT+AGG | - | chr8.4:44865338-44865357 | MS.gene068818:CDS | 30.0% | |
| TTCCCTGAATACCATAATTT+AGG | + | chr8.4:44866121-44866140 | None:intergenic | 30.0% | |
| TTCTAGCACAAATAAACTTG+GGG | - | chr8.4:44866014-44866033 | MS.gene068818:CDS | 30.0% | |
| TTTAGTCCTGGAAATTCAAA+AGG | - | chr8.4:44864134-44864153 | MS.gene068818:CDS | 30.0% | |
| ! | AATATATCATATTGGTCTGG+TGG | - | chr8.4:44864950-44864969 | MS.gene068818:intron | 30.0% |
| ! | AATCTTTTTGACATTCCACA+AGG | + | chr8.4:44865090-44865109 | None:intergenic | 30.0% |
| ! | ACTTAGGAACATAACTTTTC+AGG | + | chr8.4:44864916-44864935 | None:intergenic | 30.0% |
| ! | CCGAAAATTGAATTAGTTTG+CGG | - | chr8.4:44864980-44864999 | MS.gene068818:intron | 30.0% |
| ! | CCGCAAACTAATTCAATTTT+CGG | + | chr8.4:44864983-44865002 | None:intergenic | 30.0% |
| !! | TTTATTAGTGTTGATGTTCC+TGG | - | chr8.4:44865627-44865646 | MS.gene068818:CDS | 30.0% |
| AAACTCCCGATAAAATGTGT+TGG | - | chr8.4:44865375-44865394 | MS.gene068818:CDS | 35.0% | |
| AACACCTTTAACAGCTGTAT+GGG | - | chr8.4:44864187-44864206 | MS.gene068818:CDS | 35.0% | |
| AAGTAGTCTAAGCTCTTGTT+GGG | + | chr8.4:44866320-44866339 | None:intergenic | 35.0% | |
| AATATGGATATCCGAAATGG+AGG | - | chr8.4:44865142-44865161 | MS.gene068818:intron | 35.0% | |
| AATGACAAAAGGAGGTAAGT+TGG | + | chr8.4:44865486-44865505 | None:intergenic | 35.0% | |
| ACCCCTTCATTATAACTACT+TGG | + | chr8.4:44864574-44864593 | None:intergenic | 35.0% | |
| ACTAACTAGTGTTCATACAC+TGG | - | chr8.4:44865528-44865547 | MS.gene068818:CDS | 35.0% | |
| AGCTTAGACTACTTCATCTT+TGG | - | chr8.4:44866326-44866345 | MS.gene068818:CDS | 35.0% | |
| ATAGTTGGCGTAATCACTAT+TGG | - | chr8.4:44865678-44865697 | MS.gene068818:CDS | 35.0% | |
| CAAGAAGCTTCACAAGATTA+CGG | + | chr8.4:44866250-44866269 | None:intergenic | 35.0% | |
| CCCAAGTAGTTATAATGAAG+GGG | - | chr8.4:44864570-44864589 | MS.gene068818:intron | 35.0% | |
| CCCCAAGTAGTTATAATGAA+GGG | - | chr8.4:44864569-44864588 | MS.gene068818:intron | 35.0% | |
| CCCCTTCATTATAACTACTT+GGG | + | chr8.4:44864573-44864592 | None:intergenic | 35.0% | |
| CCCTTCATTATAACTACTTG+GGG | + | chr8.4:44864572-44864591 | None:intergenic | 35.0% | |
| GAAATTTGCAGGCATTATGT+TGG | - | chr8.4:44864768-44864787 | MS.gene068818:CDS | 35.0% | |
| GAGTTAACTCAACAACAGAA+AGG | + | chr8.4:44865316-44865335 | None:intergenic | 35.0% | |
| GCAAATATGGATATCCGAAA+TGG | - | chr8.4:44865139-44865158 | MS.gene068818:intron | 35.0% | |
| GGCTATATTACCTTATACAC+TGG | + | chr8.4:44866054-44866073 | None:intergenic | 35.0% | |
| TAACAAGACTATGAACCTTG+TGG | - | chr8.4:44865072-44865091 | MS.gene068818:intron | 35.0% | |
| TAACACCTTTAACAGCTGTA+TGG | - | chr8.4:44864186-44864205 | MS.gene068818:CDS | 35.0% | |
| TCAAGGATAGTTATCTACAC+CGG | - | chr8.4:44864806-44864825 | MS.gene068818:intron | 35.0% | |
| TCCCCAAGTAGTTATAATGA+AGG | - | chr8.4:44864568-44864587 | MS.gene068818:intron | 35.0% | |
| TCTTGTGTTGAAAAATGGGA+AGG | - | chr8.4:44864379-44864398 | MS.gene068818:CDS | 35.0% | |
| TTCCATTGTTCAGGAAACTT+AGG | + | chr8.4:44864932-44864951 | None:intergenic | 35.0% | |
| TTCCTAAGTTTCCTGAACAA+TGG | - | chr8.4:44864927-44864946 | MS.gene068818:intron | 35.0% | |
| ! | AGACATTAGTTTCGGCTAAT+GGG | - | chr8.4:44864093-44864112 | MS.gene068818:CDS | 35.0% |
| ! | AGTTATTAGCGGCTTTAACA+AGG | + | chr8.4:44865993-44866012 | None:intergenic | 35.0% |
| ! | CAATGCCAACACATTTTATC+GGG | + | chr8.4:44865383-44865402 | None:intergenic | 35.0% |
| ! | GAAATTGGTTTCTTTAGTCC+TGG | - | chr8.4:44864122-44864141 | MS.gene068818:CDS | 35.0% |
| ! | GCAATGCCAACACATTTTAT+CGG | + | chr8.4:44865384-44865403 | None:intergenic | 35.0% |
| ! | TATACTTGCCGTTTCTGAAA+TGG | + | chr8.4:44865919-44865938 | None:intergenic | 35.0% |
| ! | TCCTACTCTCAATTTTATCG+CGG | + | chr8.4:44864597-44864616 | None:intergenic | 35.0% |
| !! | ATATGAGAGTATTCTCCCAA+TGG | - | chr8.4:44865200-44865219 | MS.gene068818:CDS | 35.0% |
| !! | CTTTTCAGGCATTCACATTT+AGG | + | chr8.4:44864902-44864921 | None:intergenic | 35.0% |
| !! | TATGAGAGTATTCTCCCAAT+GGG | - | chr8.4:44865201-44865220 | MS.gene068818:CDS | 35.0% |
| !! | TGGAAGTTTCTAGCAAAATC+TGG | + | chr8.4:44865441-44865460 | None:intergenic | 35.0% |
| !!! | GCTAATGGGACTTTTGAAAT+TGG | - | chr8.4:44864107-44864126 | MS.gene068818:CDS | 35.0% |
| AAGTACAGATGATCCAGCAA+AGG | - | chr8.4:44864511-44864530 | MS.gene068818:CDS | 40.0% | |
| ACAAATAAACTTGGGGAAGG+TGG | - | chr8.4:44866021-44866040 | MS.gene068818:CDS | 40.0% | |
| AGCACAAATAAACTTGGGGA+AGG | - | chr8.4:44866018-44866037 | MS.gene068818:CDS | 40.0% | |
| AGTACAGATGATCCAGCAAA+GGG | - | chr8.4:44864512-44864531 | MS.gene068818:CDS | 40.0% | |
| ATGCCTGCAAATTTCCTGTA+AGG | + | chr8.4:44864763-44864782 | None:intergenic | 40.0% | |
| CATTAGCCGAAACTAATGTC+TGG | + | chr8.4:44864094-44864113 | None:intergenic | 40.0% | |
| CGTAATCTTGTGAAGCTTCT+TGG | - | chr8.4:44866248-44866267 | MS.gene068818:CDS | 40.0% | |
| CTAGAATATTCTCCCTTTGC+TGG | + | chr8.4:44864527-44864546 | None:intergenic | 40.0% | |
| CTTGGATGGAACTTAGTAAC+TGG | - | chr8.4:44864461-44864480 | MS.gene068818:CDS | 40.0% | |
| GAAGACTGTCTCTGATATCT+TGG | + | chr8.4:44864318-44864337 | None:intergenic | 40.0% | |
| GAAGTAGTCTAAGCTCTTGT+TGG | + | chr8.4:44866321-44866340 | None:intergenic | 40.0% | |
| GCAAAGGGAGAATATTCTAG+TGG | - | chr8.4:44864527-44864546 | MS.gene068818:intron | 40.0% | |
| GGAAGGATGTAGCCATAAAA+CGG | - | chr8.4:44866153-44866172 | MS.gene068818:CDS | 40.0% | |
| GGTGTTCTTGTGATTCTCAA+CGG | - | chr8.4:44864269-44864288 | MS.gene068818:CDS | 40.0% | |
| GTATATAGACTGTCCCTTAC+AGG | - | chr8.4:44864746-44864765 | MS.gene068818:CDS | 40.0% | |
| GTCAATCAATCTATCCGAGA+CGG | - | chr8.4:44864068-44864087 | MS.gene068818:CDS | 40.0% | |
| GTCCTGGAAATTCAAAAGGT+CGG | - | chr8.4:44864138-44864157 | MS.gene068818:CDS | 40.0% | |
| GTCTCGGATAGATTGATTGA+CGG | + | chr8.4:44864069-44864088 | None:intergenic | 40.0% | |
| GTCTTGCACCATTTCAGAAA+CGG | - | chr8.4:44865908-44865927 | MS.gene068818:CDS | 40.0% | |
| TCCGCGATAAAATTGAGAGT+AGG | - | chr8.4:44864593-44864612 | MS.gene068818:intron | 40.0% | |
| TCCGTGTGATACATTATTGC+CGG | - | chr8.4:44864430-44864449 | MS.gene068818:CDS | 40.0% | |
| TGCCTGCAAATTTCCTGTAA+GGG | + | chr8.4:44864762-44864781 | None:intergenic | 40.0% | |
| TGGATTTGGACCAGTGTATA+AGG | - | chr8.4:44866041-44866060 | MS.gene068818:CDS | 40.0% | |
| TGGTGATCTTCATATCTCTG+CGG | + | chr8.4:44865421-44865440 | None:intergenic | 40.0% | |
| TGTCATGTTGCACATTTCAG+TGG | - | chr8.4:44865870-44865889 | MS.gene068818:CDS | 40.0% | |
| TTCAATAAATGCACAGCTCC+TGG | - | chr8.4:44864346-44864365 | MS.gene068818:intron | 40.0% | |
| TTGAGAGTAGGATCATGGAA+TGG | - | chr8.4:44864605-44864624 | MS.gene068818:intron | 40.0% | |
| ! | ATGGGAAGGACTACATTTTG+TGG | - | chr8.4:44864393-44864412 | MS.gene068818:CDS | 40.0% |
| ! | CAGACATTAGTTTCGGCTAA+TGG | - | chr8.4:44864092-44864111 | MS.gene068818:CDS | 40.0% |
| ! | TACCGACCTTTTGAATTTCC+AGG | + | chr8.4:44864143-44864162 | None:intergenic | 40.0% |
| ! | TTCCTGGAAGCACAAAAAAG+CGG | - | chr8.4:44865643-44865662 | MS.gene068818:CDS | 40.0% |
| !! | ACTCCTGAGTTATTTTGCAC+CGG | + | chr8.4:44864230-44864249 | None:intergenic | 40.0% |
| !! | ATGAGAGTATTCTCCCAATG+GGG | - | chr8.4:44865202-44865221 | MS.gene068818:CDS | 40.0% |
| !! | GTGTACCGGTTATGCAAATA+TGG | - | chr8.4:44865126-44865145 | MS.gene068818:intron | 40.0% |
| !! | TACAACGATGAAGAAGTGTC+TGG | + | chr8.4:44865052-44865071 | None:intergenic | 40.0% |
| !! | TCTTCTTTGGTTTGGTGATC+TGG | - | chr8.4:44865174-44865193 | MS.gene068818:CDS | 40.0% |
| !! | TTGGACCTAGTTCTGAAGAA+GGG | + | chr8.4:44865249-44865268 | None:intergenic | 40.0% |
| !! | TTTGGACCTAGTTCTGAAGA+AGG | + | chr8.4:44865250-44865269 | None:intergenic | 40.0% |
| AAAACGGCACTCGAATGTGT+CGG | - | chr8.4:44866169-44866188 | MS.gene068818:CDS | 45.0% | |
| AAACTAATGTCTGGCCGTCT+CGG | + | chr8.4:44864085-44864104 | None:intergenic | 45.0% | |
| AAAGAGATCTTGCCCCCATT+GGG | + | chr8.4:44865218-44865237 | None:intergenic | 45.0% | |
| AAGGTCGGTATTTGGGTATG+TGG | - | chr8.4:44864153-44864172 | MS.gene068818:CDS | 45.0% | |
| ACACCGGTGCAAAATAACTC+AGG | - | chr8.4:44864224-44864243 | MS.gene068818:CDS | 45.0% | |
| ACCTTTAACAGCTGTATGGG+TGG | - | chr8.4:44864190-44864209 | MS.gene068818:CDS | 45.0% | |
| AGAGTCCCTTCTTCAGAACT+AGG | - | chr8.4:44865241-44865260 | MS.gene068818:CDS | 45.0% | |
| AGTGGCTGTCTTCTTTGGTT+TGG | - | chr8.4:44865166-44865185 | MS.gene068818:CDS | 45.0% | |
| ATTCAGGGAACACTCGTAGA+CGG | - | chr8.4:44866131-44866150 | MS.gene068818:CDS | 45.0% | |
| ATTCGAAAAGCGAGTAGGGA+GGG | - | chr8.4:44865343-44865362 | MS.gene068818:CDS | 45.0% | |
| CCCGGCAATAATGTATCACA+CGG | + | chr8.4:44864434-44864453 | None:intergenic | 45.0% | |
| CCGTGTGATACATTATTGCC+GGG | - | chr8.4:44864431-44864450 | MS.gene068818:CDS | 45.0% | |
| CTACTTGGGGATATCCTCTA+CGG | + | chr8.4:44864559-44864578 | None:intergenic | 45.0% | |
| GAATGTGTCGGATCAAGGAT+TGG | - | chr8.4:44866181-44866200 | MS.gene068818:CDS | 45.0% | |
| GATATCCGAAATGGAGGTAG+TGG | - | chr8.4:44865148-44865167 | MS.gene068818:intron | 45.0% | |
| GGACAAGTCTTTCAAGCTCA+AGG | - | chr8.4:44864789-44864808 | MS.gene068818:intron | 45.0% | |
| GGTGCAAGACGATATAACCT+TGG | + | chr8.4:44865898-44865917 | None:intergenic | 45.0% | |
| GTCCCTTACAGGAAATTTGC+AGG | - | chr8.4:44864757-44864776 | MS.gene068818:CDS | 45.0% | |
| TAAAGAGATCTTGCCCCCAT+TGG | + | chr8.4:44865219-44865238 | None:intergenic | 45.0% | |
| TATTCGAAAAGCGAGTAGGG+AGG | - | chr8.4:44865342-44865361 | MS.gene068818:CDS | 45.0% | |
| TGCGGAAACAACAACACAAG+TGG | - | chr8.4:44864998-44865017 | MS.gene068818:intron | 45.0% | |
| TGGTTGCTGCATTCATAGAG+AGG | - | chr8.4:44866268-44866287 | MS.gene068818:CDS | 45.0% | |
| TTATTGCCGGGAATGAAGCT+TGG | - | chr8.4:44864443-44864462 | MS.gene068818:CDS | 45.0% | |
| TTCCATCCAAGCTTCATTCC+CGG | + | chr8.4:44864452-44864471 | None:intergenic | 45.0% | |
| ! | AAACTTGGGGAAGGTGGATT+TGG | - | chr8.4:44866027-44866046 | MS.gene068818:CDS | 45.0% |
| ! | AGACGGCCAGACATTAGTTT+CGG | - | chr8.4:44864085-44864104 | MS.gene068818:CDS | 45.0% |
| ! | TGGAATGGTCGCTCTTTTAC+TGG | - | chr8.4:44864620-44864639 | MS.gene068818:intron | 45.0% |
| !! | TGAGAGTATTCTCCCAATGG+GGG | - | chr8.4:44865203-44865222 | MS.gene068818:CDS | 45.0% |
| !!! | CACATTCGAGTGCCGTTTTA+TGG | + | chr8.4:44866168-44866187 | None:intergenic | 45.0% |
| !!! | ATTTTCAAAAAATTTAAATA+TGG | + | chr8.4:44865793-44865812 | None:intergenic | 5.0% |
| AAATGCACAGCTCCTGGACA+CGG | - | chr8.4:44864352-44864371 | MS.gene068818:intron | 50.0% | |
| ACACAAGATTTCCCGTGTCC+AGG | + | chr8.4:44864367-44864386 | None:intergenic | 50.0% | |
| ACGGTGCAAACAGCACTGTT+TGG | - | chr8.4:44864288-44864307 | MS.gene068818:intron | 50.0% | |
| AGCTGTATGGGTGGCTAACA+GGG | - | chr8.4:44864199-44864218 | MS.gene068818:CDS | 50.0% | |
| ATCACATGAATCTTCCGCGC+CGG | + | chr8.4:44864828-44864847 | None:intergenic | 50.0% | |
| CACTCGAATGTGTCGGATCA+AGG | - | chr8.4:44866176-44866195 | MS.gene068818:CDS | 50.0% | |
| GACAGCCACTACCTCCATTT+CGG | + | chr8.4:44865156-44865175 | None:intergenic | 50.0% | |
| GATAGTTATCTACACCGGCG+CGG | - | chr8.4:44864811-44864830 | MS.gene068818:intron | 50.0% | |
| GCACAAAAAAGCGGCTGATG+CGG | - | chr8.4:44865652-44865671 | MS.gene068818:CDS | 50.0% | |
| GCCACCCATACAGCTGTTAA+AGG | + | chr8.4:44864194-44864213 | None:intergenic | 50.0% | |
| TGCACATTTCAGTGGCACCA+AGG | - | chr8.4:44865878-44865897 | MS.gene068818:CDS | 50.0% | |
| TGTGTCGGATCAAGGATTGG+AGG | - | chr8.4:44866184-44866203 | MS.gene068818:CDS | 50.0% | |
| TTCAGGGAACACTCGTAGAC+GGG | - | chr8.4:44866132-44866151 | MS.gene068818:CDS | 50.0% | |
| ! | GAGGTAGTGGCTGTCTTCTT+TGG | - | chr8.4:44865161-44865180 | MS.gene068818:intron | 50.0% |
| !! | TCTAGTGGTGTTGACCGTAG+AGG | - | chr8.4:44864542-44864561 | MS.gene068818:intron | 50.0% |
| !!! | AGCCGCTTTTTTGTGCTTCC+AGG | + | chr8.4:44865648-44865667 | None:intergenic | 50.0% |
| AATGCACAGCTCCTGGACAC+GGG | - | chr8.4:44864353-44864372 | MS.gene068818:intron | 55.0% | |
| CAGCTGTATGGGTGGCTAAC+AGG | - | chr8.4:44864198-44864217 | MS.gene068818:CDS | 55.0% | |
| CGGCTGATGCGGATCATAGT+TGG | - | chr8.4:44865663-44865682 | MS.gene068818:CDS | 55.0% | |
| GGTGGCTAACAGGGAAACAC+CGG | - | chr8.4:44864208-44864227 | MS.gene068818:CDS | 55.0% | |
| TGCCGGGAATGAAGCTTGGA+TGG | - | chr8.4:44864447-44864466 | MS.gene068818:CDS | 55.0% | |
| GGGAACACTCGTAGACGGGA+AGG | - | chr8.4:44866136-44866155 | MS.gene068818:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 44864066 | 44866361 | 44864066 | ID=MS.gene068818 |
| chr8.4 | mRNA | 44864066 | 44866361 | 44864066 | ID=MS.gene068818.t1;Parent=MS.gene068818 |
| chr8.4 | exon | 44865165 | 44866361 | 44865165 | ID=MS.gene068818.t1.exon1;Parent=MS.gene068818.t1 |
| chr8.4 | CDS | 44865165 | 44866361 | 44865165 | ID=cds.MS.gene068818.t1;Parent=MS.gene068818.t1 |
| chr8.4 | exon | 44864686 | 44864802 | 44864686 | ID=MS.gene068818.t1.exon2;Parent=MS.gene068818.t1 |
| chr8.4 | CDS | 44864686 | 44864802 | 44864686 | ID=cds.MS.gene068818.t1;Parent=MS.gene068818.t1 |
| chr8.4 | exon | 44864365 | 44864537 | 44864365 | ID=MS.gene068818.t1.exon3;Parent=MS.gene068818.t1 |
| chr8.4 | CDS | 44864365 | 44864537 | 44864365 | ID=cds.MS.gene068818.t1;Parent=MS.gene068818.t1 |
| chr8.4 | exon | 44864066 | 44864290 | 44864066 | ID=MS.gene068818.t1.exon4;Parent=MS.gene068818.t1 |
| chr8.4 | CDS | 44864066 | 44864290 | 44864066 | ID=cds.MS.gene068818.t1;Parent=MS.gene068818.t1 |
| Gene Sequence |
| Protein sequence |
