Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068930.t1 | XP_013463678.1 | 98.1 | 265 | 5 | 0 | 1 | 265 | 1 | 265 | 3.40E-137 | 497.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068930.t1 | Q9LRP1 | 81.8 | 264 | 47 | 1 | 1 | 263 | 1 | 264 | 1.6e-114 | 413.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068930.t1 | A0A072V8M0 | 98.1 | 265 | 5 | 0 | 1 | 265 | 1 | 265 | 2.5e-137 | 497.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene068930 | MS.gene46386 | PPI |
MS.gene61249 | MS.gene068930 | PPI |
MS.gene011609 | MS.gene068930 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068930.t1 | MTR_2g045960 | 98.113 | 265 | 5 | 0 | 1 | 265 | 1 | 265 | 0.0 | 537 |
MS.gene068930.t1 | MTR_4g123910 | 87.925 | 265 | 32 | 0 | 1 | 265 | 1 | 265 | 4.06e-166 | 460 |
MS.gene068930.t1 | MTR_4g099140 | 63.813 | 257 | 88 | 2 | 7 | 261 | 7 | 260 | 3.36e-106 | 308 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068930.t1 | AT3G17440 | 81.818 | 264 | 47 | 1 | 1 | 263 | 1 | 264 | 3.58e-153 | 428 |
MS.gene068930.t1 | AT1G48240 | 79.924 | 264 | 52 | 1 | 1 | 263 | 1 | 264 | 4.44e-151 | 422 |
MS.gene068930.t1 | AT3G17440 | 81.221 | 213 | 39 | 1 | 1 | 212 | 1 | 213 | 4.41e-124 | 352 |
MS.gene068930.t1 | AT1G48240 | 81.690 | 213 | 38 | 1 | 52 | 263 | 1 | 213 | 5.26e-122 | 347 |
MS.gene068930.t1 | AT2G35190 | 66.795 | 259 | 79 | 3 | 7 | 261 | 7 | 262 | 2.56e-110 | 319 |
Find 56 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGAGCTGTTTGTTCACTTC+TGG | 0.121538 | 2.1:-45618345 | None:intergenic |
CTTTCAAGGTTGTGGCAGTT+TGG | 0.234955 | 2.1:-45622113 | None:intergenic |
CTTTAATCTTGTCGAGCTTT+TGG | 0.262126 | 2.1:-45617777 | None:intergenic |
CAGCTGGTTACTTTGTCTAT+TGG | 0.273105 | 2.1:-45617803 | None:intergenic |
GGAGCTGGAGGCGCCAATCC+TGG | 0.287674 | 2.1:-45622989 | None:intergenic |
TTTCAAGGTTGTGGCAGTTT+GGG | 0.302727 | 2.1:-45622112 | None:intergenic |
TGAGCTGTTTGTTCACTTCT+GGG | 0.306392 | 2.1:-45618344 | None:intergenic |
TGAACTTACTTGGCCTTTCA+AGG | 0.384292 | 2.1:-45622127 | None:intergenic |
CCTCAGGTGGAGCAGATTCA+TGG | 0.410127 | 2.1:+45615119 | MS.gene068930:CDS |
AATCAAGAACTTATAAATGC+TGG | 0.421675 | 2.1:+45621941 | MS.gene068930:CDS |
TTCCGATCTCCTTCACAAGC+TGG | 0.426038 | 2.1:-45622301 | None:intergenic |
GGCCGAAGAAAATGTTCAAT+TGG | 0.428045 | 2.1:+45619888 | MS.gene068930:CDS |
AAAAGCCTCCTCGTCGGAGC+TGG | 0.446002 | 2.1:-45623004 | None:intergenic |
CGAAGATGAGGGAGTGTAAA+GGG | 0.451524 | 2.1:+45617839 | MS.gene068930:CDS |
TACTTGGCCTTTCAAGGTTG+TGG | 0.454866 | 2.1:-45622121 | None:intergenic |
TCCGATCTCCTTCACAAGCT+GGG | 0.461441 | 2.1:-45622300 | None:intergenic |
AATTCAGTTCTCAATTAAGA+AGG | 0.463648 | 2.1:+45622274 | MS.gene068930:CDS |
GAGCTGGAGGCGCCAATCCT+GGG | 0.464083 | 2.1:-45622988 | None:intergenic |
GAAAATGTTCAATTGGCATC+AGG | 0.467613 | 2.1:+45619895 | MS.gene068930:CDS |
AATTGCCATCATTGTTGTAA+AGG | 0.471683 | 2.1:+45622471 | MS.gene068930:CDS |
GACGATGGATGAAACTGATC+AGG | 0.474838 | 2.1:+45621970 | MS.gene068930:CDS |
CGTGAAATTAAAGATGAAGA+TGG | 0.477484 | 2.1:+45618312 | MS.gene068930:CDS |
TCGCTGTGAGTTCTTCCAGC+TGG | 0.479075 | 2.1:-45617819 | None:intergenic |
CAATTACACCACAGACGATA+AGG | 0.479487 | 2.1:-45622453 | None:intergenic |
AGCTGTTTGTTCACTTCTGG+GGG | 0.490045 | 2.1:-45618342 | None:intergenic |
GGCTATAGAAAGATCTAAGC+AGG | 0.501232 | 2.1:+45621991 | MS.gene068930:CDS |
ATCAAGAACTTATAAATGCT+GGG | 0.502792 | 2.1:+45621942 | MS.gene068930:CDS |
CAAACTGCCACAACCTTGAA+AGG | 0.503625 | 2.1:+45622114 | MS.gene068930:CDS |
TGATACCTTTACAACAATGA+TGG | 0.507547 | 2.1:-45622476 | None:intergenic |
AGCCTCCTCGTCGGAGCTGG+AGG | 0.508194 | 2.1:-45623001 | None:intergenic |
GTACATCAAACAATTGAAGT+AGG | 0.511074 | 2.1:+45622087 | MS.gene068930:CDS |
CAATAGACAAAGTAACCAGC+TGG | 0.517827 | 2.1:+45617804 | MS.gene068930:CDS |
GAGCTGTTTGTTCACTTCTG+GGG | 0.520474 | 2.1:-45618343 | None:intergenic |
TCTCTAATATCTTTGTTGTG+TGG | 0.527853 | 2.1:-45622962 | None:intergenic |
TCGCCGGCGACAATGGCTAC+AGG | 0.530326 | 2.1:+45615083 | None:intergenic |
TATTAGAGATATCCCAGGAT+TGG | 0.535138 | 2.1:+45622976 | MS.gene068930:CDS |
TGTGAAGGAGATCGGAAGAA+AGG | 0.540410 | 2.1:+45622307 | MS.gene068930:CDS |
TCCCAGCTTGTGAAGGAGAT+CGG | 0.543339 | 2.1:+45622299 | MS.gene068930:CDS |
AGGCTTGCAGATGACTCCTC+AGG | 0.544493 | 2.1:+45615103 | MS.gene068930:CDS |
CAAGGAACTAAATTCATATG+TGG | 0.554861 | 2.1:+45619491 | MS.gene068930:CDS |
CAATGATGAAAAGCAATCAA+TGG | 0.557115 | 2.1:+45618365 | MS.gene068930:CDS |
TTTCTGTTCCTTATCGTCTG+TGG | 0.557552 | 2.1:+45622445 | MS.gene068930:CDS |
GCGAAGATGAGGGAGTGTAA+AGG | 0.562910 | 2.1:+45617838 | MS.gene068930:CDS |
CGCCTCCAGCTCCGACGAGG+AGG | 0.567815 | 2.1:+45622999 | MS.gene068930:CDS |
TACATCAAACAATTGAAGTA+GGG | 0.569693 | 2.1:+45622088 | MS.gene068930:CDS |
AAGAACTCACAGCGAAGATG+AGG | 0.571166 | 2.1:+45617827 | MS.gene068930:CDS |
GAAGGCTTCCCAGCTTGTGA+AGG | 0.586477 | 2.1:+45622292 | MS.gene068930:CDS |
GGCGGGGTCAAGTCAACCCA+TGG | 0.587560 | 2.1:+45619867 | MS.gene068930:CDS |
AATAGGTACATGAGTACACT+TGG | 0.600694 | 2.1:+45619814 | MS.gene068930:intron |
CCATGAATCTGCTCCACCTG+AGG | 0.609029 | 2.1:-45615119 | None:intergenic |
AGAACTCACAGCGAAGATGA+GGG | 0.611642 | 2.1:+45617828 | MS.gene068930:CDS |
CTTGCAGATGACTCCTCAGG+TGG | 0.612756 | 2.1:+45615106 | MS.gene068930:CDS |
AAAGATATTAGAGATATCCC+AGG | 0.626294 | 2.1:+45622971 | MS.gene068930:CDS |
TGGCGCCTCCAGCTCCGACG+AGG | 0.638245 | 2.1:+45622996 | MS.gene068930:CDS |
AAATGCTGGGACGAAGACGA+TGG | 0.653074 | 2.1:+45621955 | MS.gene068930:CDS |
GCATACAAAAGCCTCCTCGT+CGG | 0.684492 | 2.1:-45623010 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 45615095 | 45623045 | 45615095 | ID=MS.gene068930 |
chr2.1 | mRNA | 45615095 | 45623045 | 45615095 | ID=MS.gene068930.t1;Parent=MS.gene068930 |
chr2.1 | exon | 45615095 | 45615171 | 45615095 | ID=MS.gene068930.t1.exon1;Parent=MS.gene068930.t1 |
chr2.1 | CDS | 45615095 | 45615171 | 45615095 | ID=cds.MS.gene068930.t1;Parent=MS.gene068930.t1 |
chr2.1 | exon | 45617768 | 45617860 | 45617768 | ID=MS.gene068930.t1.exon2;Parent=MS.gene068930.t1 |
chr2.1 | CDS | 45617768 | 45617860 | 45617768 | ID=cds.MS.gene068930.t1;Parent=MS.gene068930.t1 |
chr2.1 | exon | 45618293 | 45618386 | 45618293 | ID=MS.gene068930.t1.exon3;Parent=MS.gene068930.t1 |
chr2.1 | CDS | 45618293 | 45618386 | 45618293 | ID=cds.MS.gene068930.t1;Parent=MS.gene068930.t1 |
chr2.1 | exon | 45619489 | 45619526 | 45619489 | ID=MS.gene068930.t1.exon4;Parent=MS.gene068930.t1 |
chr2.1 | CDS | 45619489 | 45619526 | 45619489 | ID=cds.MS.gene068930.t1;Parent=MS.gene068930.t1 |
chr2.1 | exon | 45619819 | 45619916 | 45619819 | ID=MS.gene068930.t1.exon5;Parent=MS.gene068930.t1 |
chr2.1 | CDS | 45619819 | 45619916 | 45619819 | ID=cds.MS.gene068930.t1;Parent=MS.gene068930.t1 |
chr2.1 | exon | 45621933 | 45622012 | 45621933 | ID=MS.gene068930.t1.exon6;Parent=MS.gene068930.t1 |
chr2.1 | CDS | 45621933 | 45622012 | 45621933 | ID=cds.MS.gene068930.t1;Parent=MS.gene068930.t1 |
chr2.1 | exon | 45622084 | 45622140 | 45622084 | ID=MS.gene068930.t1.exon7;Parent=MS.gene068930.t1 |
chr2.1 | CDS | 45622084 | 45622140 | 45622084 | ID=cds.MS.gene068930.t1;Parent=MS.gene068930.t1 |
chr2.1 | exon | 45622236 | 45622328 | 45622236 | ID=MS.gene068930.t1.exon8;Parent=MS.gene068930.t1 |
chr2.1 | CDS | 45622236 | 45622328 | 45622236 | ID=cds.MS.gene068930.t1;Parent=MS.gene068930.t1 |
chr2.1 | exon | 45622418 | 45622492 | 45622418 | ID=MS.gene068930.t1.exon9;Parent=MS.gene068930.t1 |
chr2.1 | CDS | 45622418 | 45622492 | 45622418 | ID=cds.MS.gene068930.t1;Parent=MS.gene068930.t1 |
chr2.1 | exon | 45622953 | 45623045 | 45622953 | ID=MS.gene068930.t1.exon10;Parent=MS.gene068930.t1 |
chr2.1 | CDS | 45622953 | 45623045 | 45622953 | ID=cds.MS.gene068930.t1;Parent=MS.gene068930.t1 |
Gene Sequence |
Protein sequence |