Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06917.t1 | XP_024636348.1 | 68.1 | 774 | 44 | 4 | 1 | 571 | 1 | 774 | 5.20E-276 | 959.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06917.t1 | Q9SZL8 | 35.2 | 213 | 132 | 4 | 20 | 228 | 76 | 286 | 2.6e-26 | 121.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06917.t1 | A0A396GJD5 | 51.9 | 668 | 134 | 3 | 1 | 481 | 1 | 668 | 1.3e-172 | 615.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06917.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055357 | MS.gene06917 | 0.821732 | 3.45E-53 | -1.69E-46 |
| MS.gene055818 | MS.gene06917 | 0.802159 | 6.40E-49 | -1.69E-46 |
| MS.gene056498 | MS.gene06917 | 0.813373 | 2.65E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene06917 | 0.811461 | 6.92E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06917.t1 | MTR_6g051425 | 74.249 | 233 | 56 | 1 | 1 | 229 | 1 | 233 | 1.48e-125 | 372 |
| MS.gene06917.t1 | MTR_2g039370 | 82.432 | 74 | 13 | 0 | 49 | 122 | 98 | 171 | 7.75e-35 | 133 |
| MS.gene06917.t1 | MTR_3g465760 | 73.913 | 69 | 14 | 1 | 41 | 105 | 2 | 70 | 2.97e-27 | 105 |
| MS.gene06917.t1 | MTR_4g035820 | 26.333 | 300 | 199 | 10 | 18 | 304 | 76 | 366 | 7.04e-21 | 97.1 |
| MS.gene06917.t1 | MTR_1g083640 | 27.155 | 232 | 146 | 6 | 22 | 232 | 56 | 285 | 9.48e-21 | 93.2 |
| MS.gene06917.t1 | MTR_0558s0020 | 27.803 | 223 | 138 | 6 | 28 | 229 | 47 | 267 | 2.57e-20 | 92.0 |
| MS.gene06917.t1 | MTR_1g013060 | 27.053 | 207 | 141 | 4 | 19 | 218 | 26 | 229 | 3.92e-19 | 87.0 |
| MS.gene06917.t1 | MTR_1g070355 | 26.923 | 208 | 142 | 6 | 27 | 229 | 84 | 286 | 9.60e-17 | 84.0 |
| MS.gene06917.t1 | MTR_8g446020 | 29.333 | 150 | 101 | 3 | 83 | 229 | 80 | 227 | 3.69e-16 | 79.0 |
| MS.gene06917.t1 | MTR_6g090505 | 21.658 | 374 | 214 | 8 | 59 | 380 | 16 | 362 | 1.29e-15 | 79.0 |
| MS.gene06917.t1 | MTR_7g446520 | 26.840 | 231 | 143 | 4 | 2 | 229 | 77 | 284 | 3.94e-15 | 77.4 |
| MS.gene06917.t1 | MTR_0337s0040 | 28.472 | 144 | 102 | 1 | 83 | 225 | 81 | 224 | 9.13e-15 | 74.3 |
| MS.gene06917.t1 | MTR_0402s0040 | 29.240 | 171 | 105 | 6 | 29 | 191 | 38 | 200 | 6.94e-14 | 74.7 |
| MS.gene06917.t1 | MTR_7g446480 | 29.412 | 136 | 96 | 0 | 101 | 236 | 149 | 284 | 5.86e-13 | 70.5 |
| MS.gene06917.t1 | MTR_7g446510 | 28.235 | 170 | 121 | 1 | 67 | 236 | 131 | 299 | 8.25e-13 | 70.1 |
| MS.gene06917.t1 | MTR_2g014100 | 27.083 | 192 | 117 | 6 | 22 | 192 | 49 | 238 | 1.18e-12 | 68.6 |
| MS.gene06917.t1 | MTR_2g098880 | 31.818 | 110 | 65 | 3 | 18 | 121 | 62 | 167 | 2.96e-12 | 67.4 |
| MS.gene06917.t1 | MTR_5g076070 | 25.121 | 207 | 143 | 5 | 29 | 229 | 65 | 265 | 3.61e-12 | 67.8 |
| MS.gene06917.t1 | MTR_2g098880 | 31.818 | 110 | 65 | 3 | 18 | 121 | 74 | 179 | 3.70e-12 | 67.4 |
| MS.gene06917.t1 | MTR_2g098920 | 28.972 | 107 | 75 | 1 | 18 | 124 | 81 | 186 | 4.83e-11 | 63.9 |
| MS.gene06917.t1 | MTR_5g039760 | 25.253 | 198 | 114 | 5 | 19 | 211 | 12 | 180 | 6.64e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06917.t1 | AT4G38180 | 35.211 | 213 | 132 | 4 | 20 | 228 | 76 | 286 | 6.54e-28 | 119 |
| MS.gene06917.t1 | AT4G38180 | 25.381 | 197 | 118 | 4 | 231 | 400 | 420 | 614 | 2.31e-15 | 80.1 |
| MS.gene06917.t1 | AT4G15090 | 26.977 | 215 | 139 | 5 | 24 | 229 | 58 | 263 | 1.00e-16 | 84.3 |
| MS.gene06917.t1 | AT4G15090 | 26.977 | 215 | 139 | 5 | 24 | 229 | 58 | 263 | 1.00e-16 | 84.3 |
| MS.gene06917.t1 | AT4G15090 | 26.977 | 215 | 139 | 5 | 24 | 229 | 58 | 263 | 1.00e-16 | 84.3 |
| MS.gene06917.t1 | AT4G15090 | 26.977 | 215 | 139 | 5 | 24 | 229 | 58 | 263 | 1.00e-16 | 84.3 |
| MS.gene06917.t1 | AT4G15090 | 26.977 | 215 | 139 | 5 | 24 | 229 | 58 | 263 | 1.00e-16 | 84.3 |
| MS.gene06917.t1 | AT1G10240 | 28.571 | 217 | 144 | 5 | 18 | 226 | 49 | 262 | 2.53e-14 | 76.6 |
| MS.gene06917.t1 | AT1G10240 | 28.571 | 217 | 144 | 5 | 18 | 226 | 49 | 262 | 2.53e-14 | 76.6 |
| MS.gene06917.t1 | AT1G76320 | 27.805 | 205 | 135 | 5 | 27 | 229 | 7 | 200 | 3.71e-14 | 76.3 |
| MS.gene06917.t1 | AT1G76320 | 27.805 | 205 | 135 | 5 | 27 | 229 | 7 | 200 | 3.71e-14 | 76.3 |
| MS.gene06917.t1 | AT1G76320 | 27.805 | 205 | 135 | 5 | 27 | 229 | 7 | 200 | 4.01e-14 | 75.9 |
| MS.gene06917.t1 | AT1G76320 | 27.805 | 205 | 135 | 5 | 27 | 229 | 7 | 200 | 4.56e-14 | 75.9 |
| MS.gene06917.t1 | AT3G06250 | 26.761 | 213 | 113 | 6 | 18 | 228 | 191 | 362 | 4.30e-13 | 72.8 |
| MS.gene06917.t1 | AT3G06250 | 26.761 | 213 | 113 | 6 | 18 | 228 | 191 | 362 | 4.30e-13 | 72.8 |
| MS.gene06917.t1 | AT3G06250 | 26.761 | 213 | 113 | 6 | 18 | 228 | 191 | 362 | 4.30e-13 | 72.8 |
| MS.gene06917.t1 | AT2G27110 | 25.926 | 216 | 133 | 5 | 13 | 228 | 45 | 233 | 6.62e-13 | 72.4 |
| MS.gene06917.t1 | AT2G27110 | 25.926 | 216 | 133 | 5 | 13 | 228 | 45 | 233 | 6.62e-13 | 72.4 |
| MS.gene06917.t1 | AT5G28530 | 25.991 | 227 | 151 | 4 | 18 | 229 | 56 | 280 | 1.15e-12 | 71.2 |
| MS.gene06917.t1 | AT5G28530 | 25.991 | 227 | 151 | 4 | 18 | 229 | 56 | 280 | 1.15e-12 | 71.2 |
| MS.gene06917.t1 | AT5G28530 | 25.991 | 227 | 151 | 4 | 18 | 229 | 56 | 280 | 1.24e-12 | 71.2 |
| MS.gene06917.t1 | AT1G52520 | 27.014 | 211 | 142 | 4 | 19 | 229 | 87 | 285 | 1.64e-12 | 70.9 |
| MS.gene06917.t1 | AT3G59470 | 32.039 | 103 | 69 | 1 | 18 | 120 | 71 | 172 | 1.75e-11 | 65.1 |
| MS.gene06917.t1 | AT3G59470 | 32.039 | 103 | 69 | 1 | 18 | 120 | 71 | 172 | 1.75e-11 | 65.1 |
| MS.gene06917.t1 | AT3G59470 | 32.039 | 103 | 69 | 1 | 18 | 120 | 83 | 184 | 2.25e-11 | 65.1 |
Find 92 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAATATTTGGAATTATTT+AGG | 0.090273 | 3.1:-73548990 | MS.gene06917:CDS |
| TTGCAGGAATCTTGTAATTT+TGG | 0.216335 | 3.1:-73546850 | MS.gene06917:intron |
| GTATACGAGTTACAAATATT+TGG | 0.221426 | 3.1:-73549001 | MS.gene06917:CDS |
| TTGCGGATTTACAATATTAA+AGG | 0.235308 | 3.1:-73547790 | MS.gene06917:intron |
| CAAATATTTGGAATTATTTA+GGG | 0.245589 | 3.1:-73548989 | MS.gene06917:CDS |
| CTCGTTTGACTAATGTCTTT+TGG | 0.253639 | 3.1:-73548788 | MS.gene06917:CDS |
| TTGTCACAAGTTCGAATCTA+TGG | 0.257274 | 3.1:-73547833 | MS.gene06917:CDS |
| ATTATTCTTAAACCCTTCTT+TGG | 0.257903 | 3.1:+73549244 | None:intergenic |
| GTCTTTATACAATTTAGTTT+TGG | 0.305862 | 3.1:-73547605 | MS.gene06917:CDS |
| GAGAGTACAAATAGTGCTTT+AGG | 0.346074 | 3.1:-73548201 | MS.gene06917:CDS |
| ATGTTAGCAAGGAAGGAGTT+TGG | 0.356508 | 3.1:-73549151 | MS.gene06917:CDS |
| ATGTGGAAATTGCTTGATAT+TGG | 0.358664 | 3.1:-73547550 | MS.gene06917:CDS |
| GAAGGATAAACATTAGTATA+AGG | 0.359805 | 3.1:+73547156 | None:intergenic |
| GGGTTTAAGAATAATGAATA+TGG | 0.371754 | 3.1:-73549236 | MS.gene06917:CDS |
| TTCATTTGATGAATCTCAAC+AGG | 0.380743 | 3.1:-73547136 | MS.gene06917:intron |
| AGGAGACCTCATAAAGTCTA+TGG | 0.381794 | 3.1:-73549033 | MS.gene06917:CDS |
| CTACCTTGATAATTGCTACT+TGG | 0.385532 | 3.1:+73546817 | None:intergenic |
| GCAACAACATCCTTCAAGTT+GGG | 0.389027 | 3.1:-73547031 | MS.gene06917:CDS |
| AACAGTAAAACTCTTTAAAA+CGG | 0.389800 | 3.1:+73549267 | None:intergenic |
| CAAGCACATGCCTTCAAAAC+AGG | 0.394361 | 3.1:-73549344 | MS.gene06917:CDS |
| GAAAAGGTGGCGACAATTAG+AGG | 0.395021 | 3.1:-73548118 | MS.gene06917:CDS |
| ATGAATACATATCAACTTCA+TGG | 0.400065 | 3.1:-73548324 | MS.gene06917:CDS |
| TTTAGTGGCATTTGAGAAGA+TGG | 0.409481 | 3.1:-73548142 | MS.gene06917:CDS |
| ATGTCTGATGGTGATGATTC+CGG | 0.413874 | 3.1:-73547655 | MS.gene06917:CDS |
| ATCACCATCAGACATTGAAT+TGG | 0.421110 | 3.1:+73547663 | None:intergenic |
| TTCTTTGCAGTCATGCTTTG+CGG | 0.424200 | 3.1:-73547807 | MS.gene06917:CDS |
| CAGGATTTAGTGTAAGAAAA+GGG | 0.432600 | 3.1:-73549325 | MS.gene06917:CDS |
| AAGTTGAAATTGATTGAAGC+TGG | 0.434164 | 3.1:-73548897 | MS.gene06917:CDS |
| TGTCAATCAGTTGAAATTGA+TGG | 0.438803 | 3.1:-73549428 | MS.gene06917:CDS |
| ACAGGATTTAGTGTAAGAAA+AGG | 0.440176 | 3.1:-73549326 | MS.gene06917:CDS |
| AGGTTTAATGTTAGCAAGGA+AGG | 0.442161 | 3.1:-73549158 | MS.gene06917:CDS |
| ATAAAGTCTATGGTGAATTC+TGG | 0.445432 | 3.1:-73549023 | MS.gene06917:CDS |
| GACATTTGACATATTTCTCA+TGG | 0.451386 | 3.1:+73549058 | None:intergenic |
| ACAGTAAAACTCTTTAAAAC+GGG | 0.452807 | 3.1:+73549268 | None:intergenic |
| TCTTCAGTTGAATTTAAGTC+AGG | 0.456298 | 3.1:+73547496 | None:intergenic |
| AATTCACCATAGACTTTATG+AGG | 0.457499 | 3.1:+73549027 | None:intergenic |
| GCATTTAAACCCCAACTTGA+AGG | 0.462159 | 3.1:+73547021 | None:intergenic |
| AGTTGAAATTGATTGAAGCT+GGG | 0.466350 | 3.1:-73548896 | MS.gene06917:CDS |
| TGCTTGATATTGGAGTTAAG+AGG | 0.468751 | 3.1:-73547540 | MS.gene06917:CDS |
| TGTATGCAATTCGCAGCAAA+TGG | 0.471481 | 3.1:-73548281 | MS.gene06917:CDS |
| TCATTTAGTAACTTGCTACA+TGG | 0.476165 | 3.1:-73546988 | MS.gene06917:CDS |
| CTCGTTCAATTATTTCAGCC+AGG | 0.476302 | 3.1:-73546959 | MS.gene06917:intron |
| GTCGGTGGATATAACAATCT+TGG | 0.477476 | 3.1:-73548960 | MS.gene06917:CDS |
| CTTATGAAAGAGCTGATTCA+AGG | 0.480001 | 3.1:-73549202 | MS.gene06917:CDS |
| CCTTGATAATTGCTACTTGG+AGG | 0.481492 | 3.1:+73546820 | None:intergenic |
| CGCAACAAATGTCTTTGCTC+AGG | 0.482031 | 3.1:+73549083 | None:intergenic |
| TTGGAATTATTTAGGGGAAG+AGG | 0.485109 | 3.1:-73548982 | MS.gene06917:CDS |
| GGAAGCACTTCCGTGGAGAT+TGG | 0.486127 | 3.1:-73547958 | MS.gene06917:CDS |
| GAACAATTTCTCACAAAATG+AGG | 0.486915 | 3.1:-73547464 | MS.gene06917:CDS |
| TTACAGTGTGCAGCTAGATC+AGG | 0.487131 | 3.1:-73548814 | MS.gene06917:CDS |
| ATCAACTTCATGGTCACAAA+TGG | 0.496700 | 3.1:-73548314 | MS.gene06917:CDS |
| AGCAACAACATCCTTCAAGT+TGG | 0.497300 | 3.1:-73547032 | MS.gene06917:CDS |
| AGTGCTTTAGGAGATATTGC+AGG | 0.515773 | 3.1:-73548189 | MS.gene06917:CDS |
| AAGAAGAATTTCAAACCACT+TGG | 0.525111 | 3.1:-73548356 | MS.gene06917:CDS |
| ACCATCAGACATTGAATTGG+AGG | 0.525549 | 3.1:+73547666 | None:intergenic |
| AAGGACAAATTGCAAAGCTA+TGG | 0.528165 | 3.1:-73549183 | MS.gene06917:CDS |
| CAACAACATCCTTCAAGTTG+GGG | 0.535019 | 3.1:-73547030 | MS.gene06917:CDS |
| GCTTGATATTGGAGTTAAGA+GGG | 0.539861 | 3.1:-73547539 | MS.gene06917:CDS |
| AGAAATATGTCAAATGTCAA+AGG | 0.545496 | 3.1:-73549053 | MS.gene06917:CDS |
| TGTTGAGATTCATCAAATGA+AGG | 0.555454 | 3.1:+73547138 | None:intergenic |
| ATTTAGTGTAAGAAAAGGGA+GGG | 0.556280 | 3.1:-73549321 | MS.gene06917:CDS |
| CCTCCAAGTAGCAATTATCA+AGG | 0.558670 | 3.1:-73546820 | MS.gene06917:CDS |
| GATTTAGTGTAAGAAAAGGG+AGG | 0.567737 | 3.1:-73549322 | MS.gene06917:CDS |
| AGCGTTGCGGTAAAGAAGAC+CGG | 0.568368 | 3.1:+73547636 | None:intergenic |
| ACCTCCAATTCAATGTCTGA+TGG | 0.568696 | 3.1:-73547667 | MS.gene06917:CDS |
| TGTCACAAGTTCGAATCTAT+GGG | 0.570742 | 3.1:-73547832 | MS.gene06917:CDS |
| TAATGAATATGGAGGTGAAG+TGG | 0.572461 | 3.1:-73549225 | MS.gene06917:CDS |
| GGTGAGGTTTAATGTTAGCA+AGG | 0.579640 | 3.1:-73549162 | MS.gene06917:CDS |
| CTGGTATCAAATCTTCTCAA+AGG | 0.583873 | 3.1:-73548227 | MS.gene06917:CDS |
| TATTTAGGGGAAGAGGTCGG+TGG | 0.586341 | 3.1:-73548975 | MS.gene06917:CDS |
| GGCAGGTGGAAGCACTTCCG+TGG | 0.590405 | 3.1:-73547965 | MS.gene06917:intron |
| AATTATTTAGGGGAAGAGGT+CGG | 0.592715 | 3.1:-73548978 | MS.gene06917:CDS |
| GTTGAAATTGATTGAAGCTG+GGG | 0.593382 | 3.1:-73548895 | MS.gene06917:CDS |
| ACTGCAGCTAACCATAGAAG+TGG | 0.597365 | 3.1:+73547855 | None:intergenic |
| AGAAGAATTTCAAACCACTT+GGG | 0.599091 | 3.1:-73548355 | MS.gene06917:CDS |
| TAATTCTCAAGTGGGTGGAG+TGG | 0.599522 | 3.1:-73547205 | MS.gene06917:CDS |
| CATTTGAGAAGATGGTGAAA+AGG | 0.603784 | 3.1:-73548134 | MS.gene06917:CDS |
| TTTAAGAATAATGAATATGG+AGG | 0.604513 | 3.1:-73549233 | MS.gene06917:CDS |
| CTATGCAAGTAATTCTCAAG+TGG | 0.611045 | 3.1:-73547214 | MS.gene06917:CDS |
| CTGAGCAAAGACATTTGTTG+CGG | 0.611498 | 3.1:-73549082 | MS.gene06917:CDS |
| GCAAGTAATTCTCAAGTGGG+TGG | 0.619861 | 3.1:-73547210 | MS.gene06917:CDS |
| TTGAGAAGATGGTGAAAAGG+TGG | 0.621585 | 3.1:-73548131 | MS.gene06917:CDS |
| TATGCAAGTAATTCTCAAGT+GGG | 0.627225 | 3.1:-73547213 | MS.gene06917:CDS |
| CAAATTGCAAAGCTATGGTG+AGG | 0.629755 | 3.1:-73549178 | MS.gene06917:CDS |
| AAATATTTGGAATTATTTAG+GGG | 0.632966 | 3.1:-73548988 | MS.gene06917:CDS |
| AACAAATGTCTTTGCTCAGG+AGG | 0.641459 | 3.1:+73549086 | None:intergenic |
| TGCACACTGTAATAGAACAT+AGG | 0.647292 | 3.1:+73548825 | None:intergenic |
| TCACTGCTGTTTATAACACG+AGG | 0.656742 | 3.1:+73548060 | None:intergenic |
| ATTCATCATCTCATCCCAAG+TGG | 0.657667 | 3.1:+73548341 | None:intergenic |
| ATCACATCGACCAATCTCCA+CGG | 0.672242 | 3.1:+73547948 | None:intergenic |
| CTGCTGTTTATAACACGAGG+AGG | 0.675385 | 3.1:+73548063 | None:intergenic |
| AAGACTTCAGAATAGCGTTG+CGG | 0.703840 | 3.1:+73547623 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAGAAAAAAAAAATAA+AGG | - | chr3.1:73548913-73548932 | MS.gene06917:CDS | 10.0% |
| !! | TAAATTATAATCAAAATACC+TGG | + | chr3.1:73549315-73549334 | None:intergenic | 15.0% |
| !!! | AAACTTCAATTTCTTTTAAT+TGG | - | chr3.1:73547648-73547667 | MS.gene06917:CDS | 15.0% |
| !!! | AAATATTTGGAATTATTTAG+GGG | - | chr3.1:73547265-73547284 | MS.gene06917:intron | 15.0% |
| !!! | ACAAATATTTGGAATTATTT+AGG | - | chr3.1:73547263-73547282 | MS.gene06917:intron | 15.0% |
| !!! | CAAATATTTGGAATTATTTA+GGG | - | chr3.1:73547264-73547283 | MS.gene06917:intron | 15.0% |
| !!! | TTTTAAATGAGTATCTTAAT+GGG | - | chr3.1:73548266-73548285 | MS.gene06917:CDS | 15.0% |
| !!! | TTTTTAAATGAGTATCTTAA+TGG | - | chr3.1:73548265-73548284 | MS.gene06917:CDS | 15.0% |
| !! | TTATTTAATAAATGCATGAC+AGG | - | chr3.1:73547863-73547882 | MS.gene06917:CDS | 20.0% |
| !! | TTTAAATGAGTATCTTAATG+GGG | - | chr3.1:73548267-73548286 | MS.gene06917:CDS | 20.0% |
| !! | TTTAAGAATAATGAATATGG+AGG | - | chr3.1:73547020-73547039 | MS.gene06917:CDS | 20.0% |
| !!! | AACAGTAAAACTCTTTAAAA+CGG | + | chr3.1:73546989-73547008 | None:intergenic | 20.0% |
| !!! | CTGAAGTATTGATATTTTAT+CGG | - | chr3.1:73549362-73549381 | MS.gene06917:CDS | 20.0% |
| !!! | GTCTTTATACAATTTAGTTT+TGG | - | chr3.1:73548648-73548667 | MS.gene06917:intron | 20.0% |
| !!! | TGATCTGTAAATATTGTTTT+TGG | + | chr3.1:73547713-73547732 | None:intergenic | 20.0% |
| ! | AAAGTAGATTATGATTGCTT+TGG | - | chr3.1:73547503-73547522 | MS.gene06917:CDS | 25.0% |
| ! | AACAATACATCTTAACAAGA+TGG | - | chr3.1:73548503-73548522 | MS.gene06917:intron | 25.0% |
| ! | AAGTAGATTATGATTGCTTT+GGG | - | chr3.1:73547504-73547523 | MS.gene06917:CDS | 25.0% |
| ! | ACAAATCATGTCATACTTAT+TGG | + | chr3.1:73547561-73547580 | None:intergenic | 25.0% |
| ! | AGAAATATGTCAAATGTCAA+AGG | - | chr3.1:73547200-73547219 | MS.gene06917:CDS | 25.0% |
| ! | ATGAATACATATCAACTTCA+TGG | - | chr3.1:73547929-73547948 | MS.gene06917:CDS | 25.0% |
| ! | ATTATTCTTAAACCCTTCTT+TGG | + | chr3.1:73547012-73547031 | None:intergenic | 25.0% |
| ! | GAAGGATAAACATTAGTATA+AGG | + | chr3.1:73549100-73549119 | None:intergenic | 25.0% |
| ! | GGGTTTAAGAATAATGAATA+TGG | - | chr3.1:73547017-73547036 | MS.gene06917:CDS | 25.0% |
| ! | GTATACGAGTTACAAATATT+TGG | - | chr3.1:73547252-73547271 | MS.gene06917:intron | 25.0% |
| ! | TTGCGGATTTACAATATTAA+AGG | - | chr3.1:73548463-73548482 | MS.gene06917:intron | 25.0% |
| ! | TTTATAATGATGGTAGAATG+TGG | + | chr3.1:73549147-73549166 | None:intergenic | 25.0% |
| !! | AAAAAGCACAAAAAATCATG+TGG | - | chr3.1:73548686-73548705 | MS.gene06917:intron | 25.0% |
| !! | TCATTGAATTTTATTGTTGC+AGG | - | chr3.1:73549387-73549406 | MS.gene06917:CDS | 25.0% |
| !!! | AAAGCATTTTTAGAGAGTAT+GGG | - | chr3.1:73547677-73547696 | MS.gene06917:CDS | 25.0% |
| !!! | ACAGTAAAACTCTTTAAAAC+GGG | + | chr3.1:73546988-73547007 | None:intergenic | 25.0% |
| !!! | GTCACGATATACTTTTTATT+CGG | + | chr3.1:73548367-73548386 | None:intergenic | 25.0% |
| !!! | TAAAGCATTTTTAGAGAGTA+TGG | - | chr3.1:73547676-73547695 | MS.gene06917:CDS | 25.0% |
| !!! | TCACGATATACTTTTTATTC+GGG | + | chr3.1:73548366-73548385 | None:intergenic | 25.0% |
| AAAAAATGCTCCTTCACATT+TGG | - | chr3.1:73547808-73547827 | MS.gene06917:CDS | 30.0% | |
| AAAAATGCTCCTTCACATTT+GGG | - | chr3.1:73547809-73547828 | MS.gene06917:CDS | 30.0% | |
| AAGAAGAATTTCAAACCACT+TGG | - | chr3.1:73547897-73547916 | MS.gene06917:CDS | 30.0% | |
| AAGTTGAAATTGATTGAAGC+TGG | - | chr3.1:73547356-73547375 | MS.gene06917:intron | 30.0% | |
| AATTCACCATAGACTTTATG+AGG | + | chr3.1:73547229-73547248 | None:intergenic | 30.0% | |
| ACAGGATTTAGTGTAAGAAA+AGG | - | chr3.1:73546927-73546946 | MS.gene06917:intron | 30.0% | |
| AGAAGAATTTCAAACCACTT+GGG | - | chr3.1:73547898-73547917 | MS.gene06917:CDS | 30.0% | |
| AGTAGATTATGATTGCTTTG+GGG | - | chr3.1:73547505-73547524 | MS.gene06917:CDS | 30.0% | |
| AGTTGAAATTGATTGAAGCT+GGG | - | chr3.1:73547357-73547376 | MS.gene06917:intron | 30.0% | |
| ATAAAGTCTATGGTGAATTC+TGG | - | chr3.1:73547230-73547249 | MS.gene06917:CDS | 30.0% | |
| ATGATTTATCCCAACAAATG+GGG | + | chr3.1:73547585-73547604 | None:intergenic | 30.0% | |
| ATGTGGAAATTGCTTGATAT+TGG | - | chr3.1:73548703-73548722 | MS.gene06917:intron | 30.0% | |
| ATTTAGTGTAAGAAAAGGGA+GGG | - | chr3.1:73546932-73546951 | MS.gene06917:intron | 30.0% | |
| CAGGATTTAGTGTAAGAAAA+GGG | - | chr3.1:73546928-73546947 | MS.gene06917:intron | 30.0% | |
| CATTGACAAAATGTCATGTT+TGG | - | chr3.1:73547605-73547624 | MS.gene06917:CDS | 30.0% | |
| CTTGTTAAGATGTATTGTTC+AGG | + | chr3.1:73548502-73548521 | None:intergenic | 30.0% | |
| GAACAATTTCTCACAAAATG+AGG | - | chr3.1:73548789-73548808 | MS.gene06917:CDS | 30.0% | |
| GACATTTGACATATTTCTCA+TGG | + | chr3.1:73547198-73547217 | None:intergenic | 30.0% | |
| GATGATTTATCCCAACAAAT+GGG | + | chr3.1:73547586-73547605 | None:intergenic | 30.0% | |
| TATGCAAGTAATTCTCAAGT+GGG | - | chr3.1:73549040-73549059 | MS.gene06917:CDS | 30.0% | |
| TCTTCAGTTGAATTTAAGTC+AGG | + | chr3.1:73548760-73548779 | None:intergenic | 30.0% | |
| TGATGATTTATCCCAACAAA+TGG | + | chr3.1:73547587-73547606 | None:intergenic | 30.0% | |
| TGTCAATCAGTTGAAATTGA+TGG | - | chr3.1:73546825-73546844 | MS.gene06917:CDS | 30.0% | |
| TGTTGAGATTCATCAAATGA+AGG | + | chr3.1:73549118-73549137 | None:intergenic | 30.0% | |
| TTCATTTGATGAATCTCAAC+AGG | - | chr3.1:73549117-73549136 | MS.gene06917:CDS | 30.0% | |
| ! | AGTAATCATGTATTTTCTGC+TGG | - | chr3.1:73548007-73548026 | MS.gene06917:intron | 30.0% |
| ! | AGTTTTACTGTTCCAAAGAA+GGG | - | chr3.1:73546997-73547016 | MS.gene06917:CDS | 30.0% |
| ! | GATTTTGTGAGTATATACCA+AGG | + | chr3.1:73548236-73548255 | None:intergenic | 30.0% |
| ! | GGATGCAAAGATATTTTTCT+TGG | - | chr3.1:73546846-73546865 | MS.gene06917:CDS | 30.0% |
| ! | TTGCAGGAATCTTGTAATTT+TGG | - | chr3.1:73549403-73549422 | MS.gene06917:CDS | 30.0% |
| ! | TTTTCTCAAAATGTCCTTTC+TGG | + | chr3.1:73548879-73548898 | None:intergenic | 30.0% |
| !! | AGGAATCTTGTAATTTTGGT+CGG | - | chr3.1:73549407-73549426 | MS.gene06917:CDS | 30.0% |
| !! | ATGTCTCTCACAATTTTTAG+TGG | - | chr3.1:73548096-73548115 | MS.gene06917:CDS | 30.0% |
| !! | TACACTAAATCCTGTTTTGA+AGG | + | chr3.1:73546922-73546941 | None:intergenic | 30.0% |
| !! | TCATTTAGTAACTTGCTACA+TGG | - | chr3.1:73549265-73549284 | MS.gene06917:CDS | 30.0% |
| AAGGACAAATTGCAAAGCTA+TGG | - | chr3.1:73547070-73547089 | MS.gene06917:intron | 35.0% | |
| AATTATTTAGGGGAAGAGGT+CGG | - | chr3.1:73547275-73547294 | MS.gene06917:intron | 35.0% | |
| AGGTTTAATGTTAGCAAGGA+AGG | - | chr3.1:73547095-73547114 | MS.gene06917:intron | 35.0% | |
| ATCAACTTCATGGTCACAAA+TGG | - | chr3.1:73547939-73547958 | MS.gene06917:CDS | 35.0% | |
| ATCACCATCAGACATTGAAT+TGG | + | chr3.1:73548593-73548612 | None:intergenic | 35.0% | |
| CAAGATGGTCAAAAAATGCA+AGG | - | chr3.1:73548518-73548537 | MS.gene06917:intron | 35.0% | |
| CATTTGAGAAGATGGTGAAA+AGG | - | chr3.1:73548119-73548138 | MS.gene06917:CDS | 35.0% | |
| CTATGCAAGTAATTCTCAAG+TGG | - | chr3.1:73549039-73549058 | MS.gene06917:CDS | 35.0% | |
| CTGGTATCAAATCTTCTCAA+AGG | - | chr3.1:73548026-73548045 | MS.gene06917:intron | 35.0% | |
| GATTTAGTGTAAGAAAAGGG+AGG | - | chr3.1:73546931-73546950 | MS.gene06917:intron | 35.0% | |
| GCTTGATATTGGAGTTAAGA+GGG | - | chr3.1:73548714-73548733 | MS.gene06917:intron | 35.0% | |
| GTTGAAATTGATTGAAGCTG+GGG | - | chr3.1:73547358-73547377 | MS.gene06917:intron | 35.0% | |
| TAATGAATATGGAGGTGAAG+TGG | - | chr3.1:73547028-73547047 | MS.gene06917:CDS | 35.0% | |
| TGCACACTGTAATAGAACAT+AGG | + | chr3.1:73547431-73547450 | None:intergenic | 35.0% | |
| TGCTTGATATTGGAGTTAAG+AGG | - | chr3.1:73548713-73548732 | MS.gene06917:intron | 35.0% | |
| TGTCACAAGTTCGAATCTAT+GGG | - | chr3.1:73548421-73548440 | MS.gene06917:intron | 35.0% | |
| TTGGAATTATTTAGGGGAAG+AGG | - | chr3.1:73547271-73547290 | MS.gene06917:intron | 35.0% | |
| TTGTCACAAGTTCGAATCTA+TGG | - | chr3.1:73548420-73548439 | MS.gene06917:intron | 35.0% | |
| TTTAGTGGCATTTGAGAAGA+TGG | - | chr3.1:73548111-73548130 | MS.gene06917:CDS | 35.0% | |
| ! | CTACCTTGATAATTGCTACT+TGG | + | chr3.1:73549439-73549458 | None:intergenic | 35.0% |
| ! | CTCGTTTGACTAATGTCTTT+TGG | - | chr3.1:73547465-73547484 | MS.gene06917:CDS | 35.0% |
| ! | CTTATGAAAGAGCTGATTCA+AGG | - | chr3.1:73547051-73547070 | MS.gene06917:intron | 35.0% |
| ! | GAGAGTACAAATAGTGCTTT+AGG | - | chr3.1:73548052-73548071 | MS.gene06917:intron | 35.0% |
| ! | GAGTTTTACTGTTCCAAAGA+AGG | - | chr3.1:73546996-73547015 | MS.gene06917:CDS | 35.0% |
| !! | ACTAATGTCTTTTGGAGAGA+TGG | - | chr3.1:73547473-73547492 | MS.gene06917:CDS | 35.0% |
| !!! | CAATTTAGTTTTGGAATCCC+AGG | - | chr3.1:73548657-73548676 | MS.gene06917:intron | 35.0% |
| AACAAATGTCTTTGCTCAGG+AGG | + | chr3.1:73547170-73547189 | None:intergenic | 40.0% | |
| AAGACTTCAGAATAGCGTTG+CGG | + | chr3.1:73548633-73548652 | None:intergenic | 40.0% | |
| AATGAGTATCTTAATGGGGC+AGG | - | chr3.1:73548271-73548290 | MS.gene06917:CDS | 40.0% | |
| ACAGATCAAGATCCAGCTAT+GGG | - | chr3.1:73547725-73547744 | MS.gene06917:intron | 40.0% | |
| ACCATCAGACATTGAATTGG+AGG | + | chr3.1:73548590-73548609 | None:intergenic | 40.0% | |
| ACCTCCAATTCAATGTCTGA+TGG | - | chr3.1:73548586-73548605 | MS.gene06917:intron | 40.0% | |
| AGCAACAACATCCTTCAAGT+TGG | - | chr3.1:73549221-73549240 | MS.gene06917:CDS | 40.0% | |
| AGGAGACCTCATAAAGTCTA+TGG | - | chr3.1:73547220-73547239 | MS.gene06917:CDS | 40.0% | |
| ATGTTAGCAAGGAAGGAGTT+TGG | - | chr3.1:73547102-73547121 | MS.gene06917:intron | 40.0% | |
| ATTCATCATCTCATCCCAAG+TGG | + | chr3.1:73547915-73547934 | None:intergenic | 40.0% | |
| CAAATTGCAAAGCTATGGTG+AGG | - | chr3.1:73547075-73547094 | MS.gene06917:intron | 40.0% | |
| CCTCCAAGTAGCAATTATCA+AGG | - | chr3.1:73549433-73549452 | MS.gene06917:CDS | 40.0% | |
| CTCGTTCAATTATTTCAGCC+AGG | - | chr3.1:73549294-73549313 | MS.gene06917:CDS | 40.0% | |
| GCATTTAAACCCCAACTTGA+AGG | + | chr3.1:73549235-73549254 | None:intergenic | 40.0% | |
| GGTGAGGTTTAATGTTAGCA+AGG | - | chr3.1:73547091-73547110 | MS.gene06917:intron | 40.0% | |
| GTCGGTGGATATAACAATCT+TGG | - | chr3.1:73547293-73547312 | MS.gene06917:intron | 40.0% | |
| TACAGATCAAGATCCAGCTA+TGG | - | chr3.1:73547724-73547743 | MS.gene06917:intron | 40.0% | |
| TGTATGCAATTCGCAGCAAA+TGG | - | chr3.1:73547972-73547991 | MS.gene06917:intron | 40.0% | |
| TTCTTTGCAGTCATGCTTTG+CGG | - | chr3.1:73548446-73548465 | MS.gene06917:intron | 40.0% | |
| TTGAGAAGATGGTGAAAAGG+TGG | - | chr3.1:73548122-73548141 | MS.gene06917:CDS | 40.0% | |
| TTGAGAGATCCCAAATGTGA+AGG | + | chr3.1:73547821-73547840 | None:intergenic | 40.0% | |
| ! | ATGATTTGTGCCCCATTTGT+TGG | - | chr3.1:73547572-73547591 | MS.gene06917:CDS | 40.0% |
| ! | ATGTCTGATGGTGATGATTC+CGG | - | chr3.1:73548598-73548617 | MS.gene06917:intron | 40.0% |
| ! | CCTTGATAATTGCTACTTGG+AGG | + | chr3.1:73549436-73549455 | None:intergenic | 40.0% |
| ! | CTGAGCAAAGACATTTGTTG+CGG | - | chr3.1:73547171-73547190 | MS.gene06917:CDS | 40.0% |
| ! | GAAGGATGTTGTTGCTGTTA+AGG | + | chr3.1:73549217-73549236 | None:intergenic | 40.0% |
| ! | GCAACAACATCCTTCAAGTT+GGG | - | chr3.1:73549222-73549241 | MS.gene06917:CDS | 40.0% |
| ! | GTTTGGTTGTGCTTTGTTGT+TGG | - | chr3.1:73547622-73547641 | MS.gene06917:CDS | 40.0% |
| ! | TCACTGCTGTTTATAACACG+AGG | + | chr3.1:73548196-73548215 | None:intergenic | 40.0% |
| ! | TGATTTGTGCCCCATTTGTT+GGG | - | chr3.1:73547573-73547592 | MS.gene06917:CDS | 40.0% |
| !! | AGTGCTTTAGGAGATATTGC+AGG | - | chr3.1:73548064-73548083 | MS.gene06917:CDS | 40.0% |
| !! | CAACAACATCCTTCAAGTTG+GGG | - | chr3.1:73549223-73549242 | MS.gene06917:CDS | 40.0% |
| !! | TTTTGACTCAGCCACTTCTA+TGG | - | chr3.1:73548387-73548406 | MS.gene06917:intron | 40.0% |
| !!! | TTGTGCTTTTTTGTCCTCCT+GGG | + | chr3.1:73548677-73548696 | None:intergenic | 40.0% |
| !!! | TTTAGTTTTGGAATCCCAGG+AGG | - | chr3.1:73548660-73548679 | MS.gene06917:intron | 40.0% |
| !!! | TTTGTGCTTTTTTGTCCTCC+TGG | + | chr3.1:73548678-73548697 | None:intergenic | 40.0% |
| AACTCTACGACATGCATCCT+TGG | - | chr3.1:73548216-73548235 | MS.gene06917:CDS | 45.0% | |
| ACTGCAGCTAACCATAGAAG+TGG | + | chr3.1:73548401-73548420 | None:intergenic | 45.0% | |
| ATCACATCGACCAATCTCCA+CGG | + | chr3.1:73548308-73548327 | None:intergenic | 45.0% | |
| CAAGCACATGCCTTCAAAAC+AGG | - | chr3.1:73546909-73546928 | MS.gene06917:intron | 45.0% | |
| CACAGTCGATGACGTGTATT+TGG | + | chr3.1:73547773-73547792 | None:intergenic | 45.0% | |
| CGCAACAAATGTCTTTGCTC+AGG | + | chr3.1:73547173-73547192 | None:intergenic | 45.0% | |
| GAAAAGGTGGCGACAATTAG+AGG | - | chr3.1:73548135-73548154 | MS.gene06917:CDS | 45.0% | |
| GCAAGTAATTCTCAAGTGGG+TGG | - | chr3.1:73549043-73549062 | MS.gene06917:CDS | 45.0% | |
| GTTTCGCAAAGACGAAAGGA+AGG | - | chr3.1:73548842-73548861 | MS.gene06917:CDS | 45.0% | |
| TAATTCTCAAGTGGGTGGAG+TGG | - | chr3.1:73549048-73549067 | MS.gene06917:CDS | 45.0% | |
| TTACAGTGTGCAGCTAGATC+AGG | - | chr3.1:73547439-73547458 | MS.gene06917:intron | 45.0% | |
| ! | CTGCTGTTTATAACACGAGG+AGG | + | chr3.1:73548193-73548212 | None:intergenic | 45.0% |
| !! | AAATATTAAATTTATAATGA+TGG | + | chr3.1:73549157-73549176 | None:intergenic | 5.0% |
| AGCGTTGCGGTAAAGAAGAC+CGG | + | chr3.1:73548620-73548639 | None:intergenic | 50.0% | |
| AGGTCTAGTGTTCGCCAGAA+AGG | - | chr3.1:73548862-73548881 | MS.gene06917:CDS | 50.0% | |
| CCAATTGCTTTGCCCATAGC+TGG | + | chr3.1:73547740-73547759 | None:intergenic | 50.0% | |
| CCAGCTATGGGCAAAGCAAT+TGG | - | chr3.1:73547737-73547756 | MS.gene06917:intron | 50.0% | |
| CCTCGTTTCGCAAAGACGAA+AGG | - | chr3.1:73548838-73548857 | MS.gene06917:CDS | 50.0% | |
| CCTTTCGTCTTTGCGAAACG+AGG | + | chr3.1:73548841-73548860 | None:intergenic | 50.0% | |
| GAGTATCTTAATGGGGCAGG+TGG | - | chr3.1:73548274-73548293 | MS.gene06917:CDS | 50.0% | |
| TATTTAGGGGAAGAGGTCGG+TGG | - | chr3.1:73547278-73547297 | MS.gene06917:intron | 50.0% | |
| ! | CACGTCATCGACTGTGTTTG+TGG | - | chr3.1:73547777-73547796 | MS.gene06917:intron | 50.0% |
| !! | GGAAGCACTTCCGTGGAGAT+TGG | - | chr3.1:73548295-73548314 | MS.gene06917:CDS | 55.0% |
| !! | GGCAGGTGGAAGCACTTCCG+TGG | - | chr3.1:73548288-73548307 | MS.gene06917:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 73546810 | 73549465 | 73546810 | ID=MS.gene06917 |
| chr3.1 | mRNA | 73546810 | 73549465 | 73546810 | ID=MS.gene06917.t1;Parent=MS.gene06917 |
| chr3.1 | exon | 73548781 | 73549465 | 73548781 | ID=MS.gene06917.t1.exon1;Parent=MS.gene06917.t1 |
| chr3.1 | CDS | 73548781 | 73549465 | 73548781 | ID=cds.MS.gene06917.t1;Parent=MS.gene06917.t1 |
| chr3.1 | exon | 73548064 | 73548390 | 73548064 | ID=MS.gene06917.t1.exon2;Parent=MS.gene06917.t1 |
| chr3.1 | CDS | 73548064 | 73548390 | 73548064 | ID=cds.MS.gene06917.t1;Parent=MS.gene06917.t1 |
| chr3.1 | exon | 73547791 | 73547982 | 73547791 | ID=MS.gene06917.t1.exon3;Parent=MS.gene06917.t1 |
| chr3.1 | CDS | 73547791 | 73547982 | 73547791 | ID=cds.MS.gene06917.t1;Parent=MS.gene06917.t1 |
| chr3.1 | exon | 73547455 | 73547700 | 73547455 | ID=MS.gene06917.t1.exon4;Parent=MS.gene06917.t1 |
| chr3.1 | CDS | 73547455 | 73547700 | 73547455 | ID=cds.MS.gene06917.t1;Parent=MS.gene06917.t1 |
| chr3.1 | exon | 73547137 | 73547252 | 73547137 | ID=MS.gene06917.t1.exon5;Parent=MS.gene06917.t1 |
| chr3.1 | CDS | 73547137 | 73547252 | 73547137 | ID=cds.MS.gene06917.t1;Parent=MS.gene06917.t1 |
| chr3.1 | exon | 73546960 | 73547052 | 73546960 | ID=MS.gene06917.t1.exon6;Parent=MS.gene06917.t1 |
| chr3.1 | CDS | 73546960 | 73547052 | 73546960 | ID=cds.MS.gene06917.t1;Parent=MS.gene06917.t1 |
| chr3.1 | exon | 73546810 | 73546866 | 73546810 | ID=MS.gene06917.t1.exon7;Parent=MS.gene06917.t1 |
| chr3.1 | CDS | 73546810 | 73546866 | 73546810 | ID=cds.MS.gene06917.t1;Parent=MS.gene06917.t1 |
| Gene Sequence |
| Protein sequence |
