AlfalfaGEDB | MS.gene069208

M. sativa cultivar XinJiangDaYe / MS.gene069208

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF03479.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069208.t1	XP_024627700.1	97.7	343	7	1	1	342	1	343	2.60E-182	647.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069208.t1	Q8L7L5	47.8	366	155	13	1	342	1	354	4.7e-63	243.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069208.t1	A0A072TNY7	97.7	343	7	1	1	342	1	343	1.9e-182	647.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052290	MS.gene069208	0.800646	1.31E-48	-1.69E-46
MS.gene058903	MS.gene069208	0.806125	9.58E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene019617	MS.gene069208	PPI
MS.gene056772	MS.gene069208	PPI
MS.gene069208	MS.gene023869	PPI
MS.gene069208	MS.gene056772	PPI
MS.gene069208	MS.gene019617	PPI
MS.gene069208	MS.gene52238	PPI
MS.gene071821	MS.gene069208	PPI
MS.gene27725	MS.gene069208	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069208.t1	MTR_8g031100	97.668	343	7	1	1	342	1	343	0.0	672
MS.gene069208.t1	MTR_7g077120	60.286	350	127	9	1	342	1	346	5.29e-113	332
MS.gene069208.t1	MTR_5g010330	44.638	345	164	9	1	342	1	321	4.44e-76	237
MS.gene069208.t1	MTR_8g098390	44.568	359	174	10	1	342	1	351	1.59e-69	221
MS.gene069208.t1	MTR_1g061530	50.000	214	95	3	89	290	65	278	1.48e-59	196
MS.gene069208.t1	MTR_4g101990	42.553	282	129	6	78	339	61	329	4.10e-52	175
MS.gene069208.t1	MTR_7g074935	47.768	224	107	3	89	310	60	275	9.09e-52	174
MS.gene069208.t1	MTR_8g036160	49.758	207	93	3	88	285	70	274	3.35e-47	163
MS.gene069208.t1	MTR_1g076710	43.411	258	114	9	89	319	49	301	3.42e-46	160
MS.gene069208.t1	MTR_4g098460	55.782	147	58	3	124	270	57	196	4.31e-43	150

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069208.t1	AT2G45850	53.591	362	134	11	1	342	1	348	5.01e-99	296
MS.gene069208.t1	AT2G45850	53.591	362	134	11	1	342	1	348	5.01e-99	296
MS.gene069208.t1	AT3G61310	51.099	364	146	12	1	342	1	354	9.35e-86	263
MS.gene069208.t1	AT2G45850	55.208	288	99	8	1	269	1	277	4.01e-76	236
MS.gene069208.t1	AT4G12080	44.565	276	117	7	89	339	89	353	6.91e-67	214
MS.gene069208.t1	AT2G33620	50.787	254	94	10	75	318	82	314	1.66e-65	211
MS.gene069208.t1	AT2G33620	50.787	254	94	10	75	318	82	314	1.66e-65	211
MS.gene069208.t1	AT2G33620	50.787	254	94	10	75	318	82	314	1.66e-65	211
MS.gene069208.t1	AT2G33620	50.787	254	94	10	75	318	82	314	1.66e-65	211
MS.gene069208.t1	AT1G63470	47.273	275	123	6	89	342	105	378	1.87e-64	209

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Find 111 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACAGTTGGCTTCTTT+CGG	0.348817	8.2:-67163692	MS.gene069208:intron
AAATGCTACTCATTGCAACT+GGG	0.624007	8.2:+67159103	None:intergenic
AACCGGATAATGCCGCCATT+TGG	0.465036	8.2:+67164083	None:intergenic
AACGATGAATTGGTATTCAG+CGG	0.622414	8.2:+67163983	None:intergenic
AAGCCTGACAGGCTCTTACT+TGG	0.439341	8.2:-67159936	MS.gene069208:CDS
AAGTCCAGAAACGCGGTCGA+GGG	0.568708	8.2:-67163736	MS.gene069208:CDS
AATGACACGACCATCAGGAC+TGG	0.614331	8.2:+67159859	None:intergenic
AATGTAGGTGCTCCTTCTGG+GGG	0.588716	8.2:-67163881	MS.gene069208:CDS
AATTTAAATGCATGGATCGA+GGG	0.528702	8.2:-67164108	None:intergenic
ACGATGCCGATGGATTCTTC+TGG	0.481478	8.2:-67163923	MS.gene069208:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACGCCACAAAATAAAAAG+TGG	+	chr8.2:67159442-67159461	None:intergenic	30.0%
AATAAATCTTGACCTAGGTT+AGG	-	chr8.2:67160663-67160682	MS.gene069208:intron	30.0%
ACAAAGTAAACAGAGGTAAA+AGG	+	chr8.2:67163440-67163459	None:intergenic	30.0%
ACTGGGATTATAAGTGAAAT+GGG	-	chr8.2:67160365-67160384	MS.gene069208:intron	30.0%
ACTTGATTGAAACGATGAAT+TGG	+	chr8.2:67159126-67159145	None:intergenic	30.0%
ATCTTCATTCTTCTTGTTCT+TGG	+	chr8.2:67163920-67163939	None:intergenic	30.0%
ATGACTATCAGGTGATAATT+GGG	-	chr8.2:67163869-67163888	MS.gene069208:CDS	30.0%
CAAAGTAAACAGAGGTAAAA+GGG	+	chr8.2:67163439-67163458	None:intergenic	30.0%
CATTAAAAACTAAACTCAGC+CGG	+	chr8.2:67161572-67161591	None:intergenic	30.0%
GACTATAAGACATTTCAGAT+AGG	-	chr8.2:67161380-67161399	MS.gene069208:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	67158999	67164119	67158999	ID=MS.gene069208
chr8.2	mRNA	67158999	67164119	67158999	ID=MS.gene069208.t1;Parent=MS.gene069208
chr8.2	exon	67163693	67164119	67163693	ID=MS.gene069208.t1.exon1;Parent=MS.gene069208.t1
chr8.2	CDS	67163693	67164119	67163693	ID=cds.MS.gene069208.t1;Parent=MS.gene069208.t1
chr8.2	exon	67161251	67161318	67161251	ID=MS.gene069208.t1.exon2;Parent=MS.gene069208.t1
chr8.2	CDS	67161251	67161318	67161251	ID=cds.MS.gene069208.t1;Parent=MS.gene069208.t1
chr8.2	exon	67160375	67160506	67160375	ID=MS.gene069208.t1.exon3;Parent=MS.gene069208.t1
chr8.2	CDS	67160375	67160506	67160375	ID=cds.MS.gene069208.t1;Parent=MS.gene069208.t1
chr8.2	exon	67159814	67159975	67159814	ID=MS.gene069208.t1.exon4;Parent=MS.gene069208.t1
chr8.2	CDS	67159814	67159975	67159814	ID=cds.MS.gene069208.t1;Parent=MS.gene069208.t1
chr8.2	exon	67158999	67159238	67158999	ID=MS.gene069208.t1.exon5;Parent=MS.gene069208.t1
chr8.2	CDS	67158999	67159238	67158999	ID=cds.MS.gene069208.t1;Parent=MS.gene069208.t1

Gene Sequence

>MS.gene069208

ATGGATCGAGGGGACCAAATGGCGGCATTATCCGGTTCTGCATCATACTTTATGCAGAGAGGATTACCTGGTTCTGGAAACCAACATGAATTGCATAATTCCCCTGGTATTCGTCCGCTGAATACCAATTCATCGTTTCAATCAAGTATTGGTGGTGGTGGTACTATTGGATCCACGATGCCGATGGATTCTTCTGGAATTGGATCTCAATGTATCAATGTAGGTGCTCCTTCTGGGGGTGCTGCTTCAACCGGTGAACCTGCCAAAAGGAAGCGTGGAAGGCCTAGAAAATATGGGGCAGATGGAAGTGTGTCGTTAGCATTGACTCCAACACCAGCAAGCCATCCTGGAACCGTACCGCAAGTCCAGAAACGCGGTCGAGGGCGCCCTCCAGGGTCCGGGAAAAAACAACAGTTGGCTTCTTTCGGTAAATCTCTATTCCACTTTTTATTTTGTGGCGTTTAATTATAGTATAGTAATTTTAATTTGAACTTGAGATATATCTGTTTCGTAAATTCATATCCATGTGTTGTTCGATTGTATAGTTTTTGAAGTTTTATTGAGTCAAGGTTTTTTTATTTGTTCATACCGGCATTCTAATCCCTTAATGAACTGAATTAACAACGAATTTTACATTCTCACATACACAAAACACTGTCTATTCAAAATTTTACGGAATACAAAGATAGATGGGCTGTGCACAGAAGTGGTCGAGCTTTCAAAAGTCTTGGTTCATTCTATCTGTTTTAAATTTTTACGATATTTTCCATGAAACTATCAGCGTCGAAACTTGAAACACTTGATTGCTTAGACCGTTACTTCACATTTTTCAAACATTGACTTAACTTCTATTATTATTCAAATATTGCAGTCAATGTGTATCGTTTTCTTTCTCCGTTACTTGACTTGTTTTCAATGTTTGACGTACGTTTTCTTCACATTTTTCAAATATTGACTTAAATTTTATTATTCAAATATTGCAGTCAATGTGTATTGTCGTTTTCTTCCTCCGTTACTTAGCATGTTTTTCAACGTTTGACGAACGTTTTATTTGTAATTATTACACATGACGCGTGAAACACCCTATTGTTTCAGCAATTACATCACTTTTTCCCCAAAGATTTTACTGATTAAATTACAGCTGACACATCGAAACTTAGACTATTTTGGTCATTGGTTATTTTTCAAAGATTAACTTCAATTCTATTTGTTTAAACGTTACAACTAACACGCCAAAACACTTGTTTCCTAGTAGTCCACATTATTTGTTCCTTTGTCACTAAGATAATATTTGACAATTTATACCTTTATATTTGTTTCAATACATCAATTTTTTACCATACCAGAAATATTGATGCATATTTTTACTGGGATTATAAGTGAAATGGGCCAGTCCAGGCTAGGCCTTATCATTAACTTGACCTGGCCCATTTAACAAATTTAAATCATTAGCCTACATAGTCTATTTACCTAATATAGTTGAAAGCTTATTTTAGAGTTGGACCACTAGAGCTATCTCTTTAAAGAGATCACCAAGTATATTTTTGATGACAATACAATTAATATTTACTATATTGAGAACATTAACAATAAATTTTTTATTTTGGATGAGCTAAAGAGTACAGACACAAATTTTGTTTTCTTACATAGGTTCTTTTTTTTAAAATAAATCTTGACCTAGGTTAGGTTTGGGACAGCCTATAAGCCCGAAGAGGCCTCTTGACCTATTCGCACCCCTAATTTGGATGCAGGCATGATAAGTGGTTTTGGTTTATTAAACTTTTGTTTTAATACACAATATAAATTGTCCATGATAGACCTGTCCTGTTTTAAATTTTAATACACAATTTCGATATAGATGTTTTTTTTTTGGGATTGGGGGGAAATGGGCTTTGCTAAGCTAGGTTTGCCGTAGATAGACCTGTCCTGTTTCAAAATTAAGGCCCAAGTTTGGTCTGTTTATCTGAGGTCGCCTTTTTATAGCGAGGCCTTTAGGGTGTGTTTGGATTGAGGGTTTAGGAGGGGAAGGGAGCTTTTCTTTTTTTAAATTACGGACTATACAACATGTTTTTCTAAAATAAATTAAGTGTGATTGAAGTATTATATGATCGTTTATCATGTTAATATGTTAACGTTCTAAAAAACATTTCATAGTGTCCGCAATTTAAAATGAAAAGTAAACCCTCCCCTCCATTCCCCTCCATGCAAACACACAAATCCAAAAGCTTACCTCTTAATGGGATGACAGGCCTAAGTCTTTAAATAGGTCAAAATGTATATGGATTCAAGGCATTGAAATGAATATTTAGTATAATGTCAAACAATAACAATAAAATTGTCATTTTATTACTTATATTTTATTCATACGGTTAGCTTGTCAAGACTATAAGACATTTCAGATAGGCTAAAGTCTGACTCTTTTATTTAAATGGTCTTTTCATTTGTGAAGTAGTAATGCAAGTCTTAAGATTAGCTACAAGATATTTGATTTGTTTTTGCCTCCTATGAAATGCATAAGGAAAAGTAACTGTATTTTCTAAACCTCAACTCTACGTTCTTGAGAAACGTGACCGGCTGAGTTTAGTTTTTAATGAAATGGTTTATAAGATAAATTTCTCTTAGAATGATCTTATGCGGCAAGTAGCAAAGATGGATAAATTGTTGTGAATCTGTGGTATAAAGAAGTATAACTTGGGCTGCAAGTTTCTTGTCTAATTCAACCTAAGTGATTGATTTATGTTAATTTGGTTTTACTAATTCTATATATTTATGAGTTTAATTTTTTGAGTTGTTATTGGCAGGTGGTTTGATCTCTAGTTCAGCTGGAAATGGTTTCACTCCTCATGTCATCTCCATTGCAATTGGAGAAGTATGCTACATTTCTTTTAACAGTATCAATCTTTCTTTTTTGTTATTATATATGTCTGTCATTTATTTTTGGCTAAAATACATTTTTAGTACCTTTAATCTATGTTTTGGTTCCAATTTGGTAGATTAGCTTTTAAAAGCTTTAATTGGGTCATTTATCCAATATTTTAGTTTCAATTTTATCCCTTATCTTTTCAAAGCTTCAACTGGGAATTGGGCCACATATCTATTATTTATGATTTGCAATTGTCCCTTATTTTATAAAATTTACACCTATCTGGACCCCTTTTCTATGTAACACTAGCACTTTAGATTGAATGTGTGTCCAGTGCCCGATATGTGTACGTGGCTATATTCAATTATTCCATTTTATCAAATTATTACTAGTGTCGACATGTCAGTTTTATTGGTTGCTTATTTTATATCAATACGGTCCTTTTCGAATAATTTGAGCGAAAAGGTCCACGTTGAAACCAAAAATCCGAAAATTTTAAAAGTTACAGGACCAAAGAAATAAAATAAGGGACCAAAGATATGTTTTAGCATTTAGTTTTGTTAACAGTGCTTTTTTTAATGGAAGTACTTTTTTAGAAAGGGAATTCATTCAAGACATGAAATCATGCTTTAGAAAATCTTCGATGTTTCTTTTAGACGATCCGTTTGAATTTTTGTCACATGTTCTGCCATTTGTGTAATCATATGTAAGACACACTCTTTTGAAAATAAATCCTTTTCTTCTGTGTAGGACATTGCAACAAAAATTCTGGCATTTTCTCAGCAGGGACCTAGAACTATATTTGTTATGTCGGCCAATGGTGCTGTCTCTACTGTGACACTTTGTCAGGCTTCGACATCTGGGGGTTCTGTCACATATGAGGTTTGGAGCTTTCTCATTTCTACGTACATCTATGTTTCTATTTGTTTCTAGTTTCATAGAGAATTATGATTGTTTAAATACATATACGCATATCTGTTCTTGTATAGAAGCGTTATACATGCACATAATCACATAGCAACCCTTTATGGAAATGTTAGTGAAAGTACTAGCCATTCTTTAGAAGAATTGCTTAGCTTAAGAATTTAATCAATTTTTATAGGCAAATGTTAGCGGTAGCATTTCCTTATATGATCGCCATGTTATGAAGTTAATAATCTGTTTTTTTTCTTCTTCTTTTTCTTATCCTTCAAAATGTCTCTTTAGCACGTTAAGTTTGTTTATTCTTTTGTATATATGATTAGGATTATGTTTAATAATTTATGAACTTTGCTTCAATAGGGGCGTTTCGAGATACTAAGCCTGACAGGCTCTTACTTGGTTGCTGATAACGATGGCTCGCGTAATCGAACGGGTTCATTAAGTGTTTCTCTTGCCAGTCCTGATGGTCGTGTCATTGGTGGAGGTGTCGGTGGATTGCTCATTGCTGCAAGTCCTGTTCAGGTAACTGCTATTCTACTGCTGTAAGGATAACATTGAAAATCCTCTTTCTCACCTCAAAATTAGAAACATAGAAAACATTTTCTATGTTCACTCAAGTGTTTGTTTGTTGCTGTTTTACTTTCTGAAAAATTCCCTTTTACCTCTGTTTACTTTGTGAAAACATTTTCTATTTCACTAAAGTGTCTGTTTAGCTTGAGAAAACGTTTCATGTTTTCATTTTCTGTTTTCACTTTTACTTGCAAAATTGTCACGTTATTTACACTTATGTTTTCTGTTCGTATAGGAAATAGTGGCAACATTTTGTGTTTTCATTTTTACTGCACAAACATATGACAATATTTAATTCATATACATCGTCAGTGTGTAAAGATTTGTTTTAACTTTTAAGTTGCCAATCAATTAGAATAGTTAGATCATTAAAACATTTGATTTTAATAACTACTTAAGGTACACATGATTGGTTCTGATCTGTCGACAGTATAAAATTTTTTACACTAACATATTATCAAAATTAAACTCTGCTGCAAACCCTTGTTTTATTTGGATTGCTAAGTTTGATTGGTCATGACTATCAGGTGATAATTGGGAGCTTTATGTGGGGTGGACCAAAAACCAAGAACAAGAAGAATGAAGATTCAGAAGATCAAGAAGTTGGTGTAGAGGAAAATCATCATCATGGAGTTCACAACCCAGTTGCAATGAGTAGCATTTCACCAAATCAAAGTCTGACTCCAACATCTCTCAATTCTTGGCCTGCATCGCGTCCATTGGATATGCGTAATTCCCATATGGACATTGATTTAATGCGTGGGTGA

Protein sequence

>MS.gene069208.t1

MDRGDQMAALSGSASYFMQRGLPGSGNQHELHNSPGIRPLNTNSSFQSSIGGGGTIGSTMPMDSSGIGSQCINVGAPSGGAASTGEPAKRKRGRPRKYGADGSVSLALTPTPASHPGTVPQVQKRGRGRPPGSGKKQQLASFGGLISSSAGNGFTPHVISIAIGEDIATKILAFSQQGPRTIFVMSANGAVSTVTLCQASTSGGSVTYEGRFEILSLTGSYLVADNDGSRNRTGSLSVSLASPDGRVIGGGVGGLLIAASPVQVIIGSFMWGGPKTKNKKNEDSEDQEVGVEENHHHGVHNPVAMSSISPNQSLTPTSLNSWPASRPLDMRNSHMDIDLMRG