AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058903


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058903.t1 MTR_6g045553 97.143 315 9 0 1 315 160 474 0.0 636
MS.gene058903.t1 MTR_5g081960 31.437 334 202 6 1 312 154 482 9.84e-53 180
MS.gene058903.t1 MTR_4g015180 33.432 338 195 6 1 315 156 486 2.12e-50 174
MS.gene058903.t1 MTR_3g070170 31.195 343 170 5 1 312 159 466 2.85e-50 173
MS.gene058903.t1 MTR_3g102020 34.921 315 168 7 1 312 167 447 1.66e-47 166
MS.gene058903.t1 MTR_3g101960 33.758 314 171 6 1 311 166 445 4.80e-46 162
MS.gene058903.t1 MTR_3g102010 33.438 317 180 6 1 315 163 450 7.42e-46 161
MS.gene058903.t1 MTR_3g101900 32.075 318 178 7 1 315 165 447 5.67e-44 156
MS.gene058903.t1 MTR_4g094842 33.227 313 174 6 1 312 166 444 1.21e-43 155
MS.gene058903.t1 MTR_3g101970 31.447 318 167 6 1 315 167 436 4.67e-42 150
MS.gene058903.t1 MTR_4g022825 32.492 317 177 10 1 312 152 436 2.54e-40 146
MS.gene058903.t1 MTR_0190s0020 30.671 313 181 6 1 312 161 438 2.56e-40 146
MS.gene058903.t1 MTR_4g094832 33.019 318 170 9 1 313 148 427 6.67e-40 145
MS.gene058903.t1 MTR_3g101930 30.255 314 186 6 1 312 169 451 2.41e-38 141
MS.gene058903.t1 MTR_4g022800 31.132 318 182 9 1 312 152 438 2.61e-38 141
MS.gene058903.t1 MTR_4g094835 31.013 316 179 8 1 313 164 443 2.26e-37 138
MS.gene058903.t1 MTR_3g088420 29.936 314 182 8 1 312 152 429 1.01e-35 134
MS.gene058903.t1 MTR_4g022720 31.546 317 175 11 1 312 152 431 3.46e-35 132
MS.gene058903.t1 MTR_3g026310 29.338 317 195 8 1 312 152 444 3.29e-34 130
MS.gene058903.t1 MTR_4g094838 30.284 317 164 9 1 313 166 429 4.12e-34 129
MS.gene058903.t1 MTR_4g022670 28.707 317 190 9 1 312 152 437 7.94e-34 129
MS.gene058903.t1 MTR_8g041770 29.841 315 180 7 1 312 161 437 5.93e-33 126
MS.gene058903.t1 MTR_7g026860 29.781 319 181 10 1 312 152 434 1.17e-32 125
MS.gene058903.t1 MTR_4g094828 30.032 313 180 9 1 303 157 440 1.62e-31 122
MS.gene058903.t1 MTR_8g075610 27.245 323 187 12 1 315 138 420 9.62e-30 117
MS.gene058903.t1 MTR_4g097090 27.215 316 189 6 1 302 157 445 5.84e-27 110
MS.gene058903.t1 MTR_4g022290 27.124 306 177 6 1 297 158 426 4.79e-26 107
MS.gene058903.t1 MTR_8g040780 30.317 221 146 5 97 313 13 229 1.12e-25 103
MS.gene058903.t1 MTR_4g007540 24.765 319 204 8 1 315 147 433 1.64e-25 105
MS.gene058903.t1 MTR_8g079710 30.421 309 164 13 1 297 157 426 4.09e-24 102
MS.gene058903.t1 MTR_2g064495 23.344 317 197 9 1 307 147 427 7.50e-23 98.6
MS.gene058903.t1 MTR_3g102030 27.737 274 131 6 1 269 109 320 1.07e-22 96.7
MS.gene058903.t1 MTR_2g105330 23.344 317 197 9 1 307 147 427 1.38e-22 97.8
MS.gene058903.t1 MTR_4g022760 27.500 240 136 6 1 233 152 360 1.53e-21 94.4
MS.gene058903.t1 MTR_4g127650 24.611 321 190 8 1 302 158 445 2.78e-21 94.0
MS.gene058903.t1 MTR_4g094825 37.013 154 85 4 163 315 248 390 4.49e-20 90.1
MS.gene058903.t1 MTR_3g026950 25.517 290 157 8 1 264 147 403 5.48e-20 90.1
MS.gene058903.t1 MTR_3g098980 25.806 310 189 9 1 307 159 430 2.75e-17 82.4
MS.gene058903.t1 MTR_3g049150 23.620 326 190 10 1 302 146 436 1.14e-16 80.5
MS.gene058903.t1 MTR_7g026770 26.531 196 91 4 1 196 143 285 1.83e-16 78.6
MS.gene058903.t1 MTR_8g096530 24.921 317 198 9 1 314 152 431 3.41e-16 79.0
MS.gene058903.t1 MTR_6g015815 27.445 317 186 13 1 302 162 449 3.76e-16 79.0
MS.gene058903.t1 MTR_7g014200 29.021 286 159 12 1 267 163 423 1.10e-15 77.8
MS.gene058903.t1 MTR_6g015830 25.080 311 200 9 1 302 163 449 2.90e-14 73.6
MS.gene058903.t1 MTR_3g049140 24.880 209 139 4 105 298 26 231 4.99e-13 68.2
MS.gene058903.t1 MTR_4g013050 28.646 192 107 6 133 302 216 399 1.84e-11 64.7
MS.gene058903.t1 MTR_1g053315 25.455 275 154 16 1 264 175 409 3.17e-11 64.3
MS.gene058903.t1 MTR_6g034485 34.568 81 50 1 104 184 38 115 5.47e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058903.t1 AT5G23940 66.454 313 80 5 1 313 162 449 2.66e-147 423
MS.gene058903.t1 AT5G01210 33.621 348 163 4 1 315 156 468 3.75e-55 186
MS.gene058903.t1 AT5G42830 34.713 314 173 6 1 312 162 445 4.73e-50 172
MS.gene058903.t1 AT2G39980 30.833 360 169 7 1 315 155 479 6.58e-48 167
MS.gene058903.t1 AT5G07860 33.016 315 170 7 1 312 169 445 7.13e-44 156
MS.gene058903.t1 AT5G07870 32.803 314 183 5 1 312 170 457 9.82e-43 153
MS.gene058903.t1 AT5G07850 33.019 318 177 10 1 315 168 452 2.20e-42 152
MS.gene058903.t1 AT5G67150 30.503 318 185 8 1 315 161 445 6.92e-37 137
MS.gene058903.t1 AT3G50270 28.438 320 191 5 1 315 161 447 1.13e-36 137
MS.gene058903.t1 AT3G50280 30.341 323 173 10 1 312 28 309 1.81e-35 130
MS.gene058903.t1 AT3G50280 30.341 323 173 10 1 312 158 439 3.59e-34 130
MS.gene058903.t1 AT3G50300 27.640 322 192 8 1 315 159 446 5.07e-28 113
MS.gene058903.t1 AT5G48930 25.625 320 200 10 1 315 147 433 1.56e-23 100
MS.gene058903.t1 AT2G19070 25.466 322 190 7 1 302 149 440 3.30e-23 99.8
MS.gene058903.t1 AT5G38130 26.667 300 181 6 1 297 179 442 5.63e-23 99.0
MS.gene058903.t1 AT5G67160 26.101 318 184 10 1 311 154 427 1.21e-21 95.1
MS.gene058903.t1 AT3G50290 26.642 274 151 7 1 262 34 269 8.59e-21 90.5
MS.gene058903.t1 AT5G41040 24.601 313 192 7 1 307 162 436 4.80e-17 81.6
MS.gene058903.t1 AT5G41040 24.601 313 192 8 1 307 178 452 5.20e-17 81.6
MS.gene058903.t1 AT3G48720 26.115 314 183 10 1 307 155 426 9.15e-17 80.9
MS.gene058903.t1 AT5G39050 25.540 278 168 7 6 267 168 422 6.48e-14 72.4
MS.gene058903.t1 AT5G39090 24.451 319 190 11 1 305 158 439 7.00e-14 72.4
MS.gene058903.t1 AT5G39080 23.765 324 200 9 1 305 158 453 3.65e-13 70.1
MS.gene058903.t1 AT5G07080 22.148 298 202 6 1 295 163 433 6.50e-12 66.2
MS.gene058903.t1 AT5G61160 22.556 266 184 6 1 264 157 402 9.14e-12 65.9

Find 112 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTGATGGTGGTGGGCCTT+TGG 0.162802 6.2:+40114159 None:intergenic
TGGAAGTTCACCTAGGTTTA+AGG 0.194532 6.2:-40113591 MS.gene058903:CDS
CACACGTGTGTTTCGGGCCT+TGG 0.203708 6.2:+40114207 None:intergenic
AGGCTCTCTCCACTCATATT+TGG 0.242867 6.2:-40113919 MS.gene058903:CDS
CATGGCCTTCAATTACCTTT+TGG 0.245260 6.2:+40113705 None:intergenic
GCTGATGGTGGTGGGCCTTT+GGG 0.245655 6.2:+40114160 None:intergenic
CGTCACGGCTGCTGGGCTTT+TGG 0.258163 6.2:-40113762 MS.gene058903:CDS
AAGGTTTATGACATTGATTT+TGG 0.269945 6.2:-40113572 MS.gene058903:CDS
GCAAGATAAGGAATTTCTTA+TGG 0.279006 6.2:-40113411 MS.gene058903:CDS
AAAATCATTCTCAACTTTCC+AGG 0.285870 6.2:-40113939 MS.gene058903:CDS
CAAGCTTCACACGTGTGTTT+CGG 0.288866 6.2:+40114200 None:intergenic
CACAACAGCCCAACCATTCT+TGG 0.294816 6.2:-40114236 MS.gene058903:CDS
TGGTGGTGGGCCTTTGGGCT+CGG 0.305788 6.2:+40114165 None:intergenic
AAGCTTCACACGTGTGTTTC+GGG 0.326495 6.2:+40114201 None:intergenic
ATATTCACCGTCACGGCTGC+TGG 0.327578 6.2:-40113770 MS.gene058903:CDS
CGGTGAATATAGCTTGAATT+AGG 0.328962 6.2:+40113783 None:intergenic
TTTAACCATGCTGTCCTTGA+TGG 0.331947 6.2:-40114316 MS.gene058903:CDS
CATCCCATCAAATTTGTTGT+TGG 0.353936 6.2:+40113517 None:intergenic
GCCTTGGTTCTTTCCAAGAA+TGG 0.370836 6.2:+40114223 None:intergenic
GTGAACACTGTGTAGTCTTC+GGG 0.385741 6.2:+40113866 None:intergenic
GGTTCTTTCCAAGAATGGTT+GGG 0.392557 6.2:+40114228 None:intergenic
AACATTGGAGCCTGAGGCTA+TGG 0.403215 6.2:-40113444 MS.gene058903:CDS
GGTGGTGGGCCTTTGGGCTC+GGG 0.405627 6.2:+40114166 None:intergenic
GTTCCACTTCTCACAATCTC+TGG 0.407858 6.2:+40113539 None:intergenic
CGTGGCACTTCATGACTTCA+TGG 0.418816 6.2:-40114285 MS.gene058903:CDS
GCGGCTCACCCGCCACAATT+CGG 0.419308 6.2:-40113740 MS.gene058903:CDS
AACCGTCCGATGGAAGGGTT+TGG 0.420668 6.2:+40113963 None:intergenic
GGAACCAACAACAAATTTGA+TGG 0.429115 6.2:-40113521 MS.gene058903:CDS
CATCAATAGCTTTAGCATCA+TGG 0.431488 6.2:+40113687 None:intergenic
TGGTTCTTTCCAAGAATGGT+TGG 0.433192 6.2:+40114227 None:intergenic
TTCATCCTTTACCTCACCAT+TGG 0.433287 6.2:+40114138 None:intergenic
CTTTGGGCTCGGGTAGGGAG+AGG 0.433813 6.2:+40114176 None:intergenic
TGGGCCTTTGGGCTCGGGTA+GGG 0.433931 6.2:+40114171 None:intergenic
CTCCTCCCTCCACTCTTGCC+TGG 0.434809 6.2:+40113482 None:intergenic
TTGATCCAAAAGGTAATTGA+AGG 0.436135 6.2:-40113710 MS.gene058903:CDS
GTGAGGCAAGGCCCATACTT+AGG 0.436505 6.2:-40114042 MS.gene058903:CDS
CCAAAGTATGCCTCCGGCAT+TGG 0.437756 6.2:+40113809 None:intergenic
CGGCGCTTCTTTGATCCAAA+AGG 0.441589 6.2:-40113720 MS.gene058903:CDS
TTCAACCTTTGCCTCACCAT+TGG 0.443928 6.2:+40114093 None:intergenic
GGGATGATTTATTTGTATCC+AGG 0.445149 6.2:-40113500 MS.gene058903:CDS
TCACCATTGGCTGATGGTGG+TGG 0.446093 6.2:+40114151 None:intergenic
CCAATGCCGGAGGCATACTT+TGG 0.452064 6.2:-40113809 MS.gene058903:CDS
TGTGAACACTGTGTAGTCTT+CGG 0.453755 6.2:+40113865 None:intergenic
GTGGGCCTTTGGGCTCGGGT+AGG 0.453995 6.2:+40114170 None:intergenic
CTTGCCTCACCTTTGACTGA+TGG 0.456250 6.2:+40114055 None:intergenic
AAATATGAGTGGAGAGAGCC+TGG 0.462148 6.2:+40113921 None:intergenic
GCCTCACCTTTGACTGATGG+TGG 0.464493 6.2:+40114058 None:intergenic
CTCACCTTTGACTGATGGTG+GGG 0.466633 6.2:+40114060 None:intergenic
CACCATTGGCTGATGGTGCT+AGG 0.475770 6.2:+40114107 None:intergenic
GAATGGTTGGGCTGTTGTGA+TGG 0.476607 6.2:+40114240 None:intergenic
CCTCACCTTTGACTGATGGT+GGG 0.484738 6.2:+40114059 None:intergenic
TGAGGCAAGGCCCATACTTA+GGG 0.488757 6.2:-40114041 MS.gene058903:CDS
GCCTGAGGCTATGGGAAGGT+TGG 0.493581 6.2:-40113435 MS.gene058903:CDS
CACCATTGGCTGATGGTGGT+GGG 0.500291 6.2:+40114152 None:intergenic
ATCAGCCAATGGTGAGGTAA+AGG 0.506207 6.2:-40114143 MS.gene058903:CDS
AGATGGGCTAGCAATGGGCT+TGG 0.506336 6.2:-40114341 None:intergenic
TTTACCTCACCATTGGCTGA+TGG 0.510865 6.2:+40114145 None:intergenic
TTTGCCTCACCATTGGCTGA+TGG 0.513475 6.2:+40114100 None:intergenic
TCCAACCTTCCCATAGCCTC+AGG 0.514780 6.2:+40113434 None:intergenic
AAGTATGCCTCCGGCATTGG+TGG 0.514989 6.2:+40113812 None:intergenic
CATTGATGTTGAATTAACAT+TGG 0.517058 6.2:-40113459 MS.gene058903:CDS
TATTCACCGTCACGGCTGCT+GGG 0.518357 6.2:-40113769 MS.gene058903:CDS
AGGTTTCCAAAGTATGCCTC+CGG 0.518580 6.2:+40113803 None:intergenic
ATGTCATAAACCTTAAACCT+AGG 0.527449 6.2:+40113581 None:intergenic
ACGAGTGAACCCACCAATGC+CGG 0.528510 6.2:-40113822 MS.gene058903:CDS
GGGTCCACCACTGCATATCT+CGG 0.531397 6.2:+40114261 None:intergenic
GGGAAGGTTGGAGCAAGATA+AGG 0.542296 6.2:-40113423 MS.gene058903:CDS
GGTGTGAATTGTGTTGCAGT+TGG 0.547554 6.2:-40113611 MS.gene058903:CDS
AAGAAGCGCCGAATTGTGGC+GGG 0.553972 6.2:+40113732 None:intergenic
ACCTCACCATTGGCTGATGG+TGG 0.554117 6.2:+40114148 None:intergenic
AATGGTTGGGCTGTTGTGAT+GGG 0.555391 6.2:+40114241 None:intergenic
ATCAAAGAAGCGCCGAATTG+TGG 0.558770 6.2:+40113728 None:intergenic
TGTATCCAGGCAAGAGTGGA+GGG 0.559507 6.2:-40113487 MS.gene058903:CDS
CAAAAGCCCAGCAGCCGTGA+CGG 0.561878 6.2:+40113763 None:intergenic
TCACCTTTGACTGATGGTGG+GGG 0.566819 6.2:+40114061 None:intergenic
AAGCCAGAGATTGTGAGAAG+TGG 0.568369 6.2:-40113542 MS.gene058903:CDS
TTGATGAACGTAACAAAGAG+TGG 0.570116 6.2:-40113670 MS.gene058903:CDS
GTGGCACTTCATGACTTCAT+GGG 0.571085 6.2:-40114284 MS.gene058903:CDS
ATCAGCCAATGGTGAGGCAA+AGG 0.577906 6.2:-40114098 MS.gene058903:CDS
TTGTATCCAGGCAAGAGTGG+AGG 0.579701 6.2:-40113488 MS.gene058903:CDS
AGTATGCCTCCGGCATTGGT+GGG 0.580863 6.2:+40113813 None:intergenic
GAACCAACAACAAATTTGAT+GGG 0.585695 6.2:-40113520 MS.gene058903:CDS
AAAGAAGCGCCGAATTGTGG+CGG 0.595569 6.2:+40113731 None:intergenic
TTGCAGTTGGAAGTTCACCT+AGG 0.596541 6.2:-40113598 MS.gene058903:CDS
CTCTCCCTACCCGAGCCCAA+AGG 0.598539 6.2:-40114175 MS.gene058903:CDS
GTTCACGTGCAAGGCTCACG+TGG 0.602181 6.2:+40113894 None:intergenic
ACATTGGAGCCTGAGGCTAT+GGG 0.602218 6.2:-40113443 MS.gene058903:CDS
TGATGAACGTAACAAAGAGT+GGG 0.610084 6.2:-40113669 MS.gene058903:CDS
AACCAAACCCTTCCATCGGA+CGG 0.613822 6.2:-40113965 MS.gene058903:CDS
GCCACGTGGATGTTCCATCA+AGG 0.620237 6.2:+40114302 None:intergenic
TGAATTAACATTGGAGCCTG+AGG 0.623430 6.2:-40113450 MS.gene058903:CDS
GAGGTAAAGGATGAACAGAA+TGG 0.627659 6.2:-40114130 MS.gene058903:CDS
GGCCCACCACCATCAGCCAA+TGG 0.628685 6.2:-40114154 MS.gene058903:CDS
CATCAGTCAAAGGTGAGGCA+AGG 0.631349 6.2:-40114054 MS.gene058903:CDS
GGCCTAGCACCATCAGCCAA+TGG 0.635569 6.2:-40114109 MS.gene058903:CDS
CACGTGGCGCCAAATATGAG+TGG 0.636105 6.2:+40113910 None:intergenic
TATTTGTATCCAGGCAAGAG+TGG 0.639070 6.2:-40113491 MS.gene058903:CDS
ACCATTCTTGGAAAGAACCA+AGG 0.640231 6.2:-40114224 MS.gene058903:CDS
AGTCAACCAAACCCTTCCAT+CGG 0.647784 6.2:-40113969 MS.gene058903:CDS
TCAAGCTATATTCACCGTCA+CGG 0.648331 6.2:-40113777 MS.gene058903:CDS
AGCACCATCAGCCAATGGTG+AGG 0.653096 6.2:-40114104 MS.gene058903:CDS
ATGTTCCATCAAGGACAGCA+TGG 0.653199 6.2:+40114311 None:intergenic
GAGGCAAAGGTTGAACCCGA+AGG 0.658181 6.2:-40114085 MS.gene058903:CDS
ACCACCATCAGCCAATGGTG+AGG 0.663027 6.2:-40114149 MS.gene058903:CDS
AGTGAACCCACCAATGCCGG+AGG 0.665412 6.2:-40113819 MS.gene058903:CDS
CCCACCATCAGTCAAAGGTG+AGG 0.665634 6.2:-40114059 MS.gene058903:CDS
TGGGCCGAGATATGCAGTGG+TGG 0.665900 6.2:-40114265 MS.gene058903:CDS
TCATGGGCCGAGATATGCAG+TGG 0.679492 6.2:-40114268 MS.gene058903:CDS
TGGAGCCTGAGGCTATGGGA+AGG 0.683457 6.2:-40113439 MS.gene058903:CDS
ATCCAGGCAAGAGTGGAGGG+AGG 0.695098 6.2:-40113484 MS.gene058903:CDS
TGAAGTCATGAAGTGCCACG+TGG 0.764930 6.2:+40114288 None:intergenic
TCCTTGATGGAACATCCACG+TGG 0.766828 6.2:-40114303 MS.gene058903:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTTTGAATTGAAAAATCT+TGG + chr6.2:40114097-40114116 None:intergenic 20.0%
!! TCTTTGAATTGAAAAATCTT+GGG + chr6.2:40114096-40114115 None:intergenic 20.0%
! CATTGATGTTGAATTAACAT+TGG - chr6.2:40114272-40114291 MS.gene058903:CDS 25.0%
!!! AAGATTTTTTCCCTAAGTAT+GGG + chr6.2:40113703-40113722 None:intergenic 25.0%
!!! AAGGTTTATGACATTGATTT+TGG - chr6.2:40114159-40114178 MS.gene058903:CDS 25.0%
!!! ATGACATTGATTTTGGATTT+GGG - chr6.2:40114166-40114185 MS.gene058903:CDS 25.0%
!!! ATTTTTCAATTCAAAGATGC+TGG - chr6.2:40114099-40114118 MS.gene058903:CDS 25.0%
!!! TATGACATTGATTTTGGATT+TGG - chr6.2:40114165-40114184 MS.gene058903:CDS 25.0%
AAAATCATTCTCAACTTTCC+AGG - chr6.2:40113792-40113811 MS.gene058903:CDS 30.0%
ATGTCATAAACCTTAAACCT+AGG + chr6.2:40114153-40114172 None:intergenic 30.0%
GAACCAACAACAAATTTGAT+GGG - chr6.2:40114211-40114230 MS.gene058903:CDS 30.0%
GCAAGATAAGGAATTTCTTA+TGG - chr6.2:40114320-40114339 MS.gene058903:CDS 30.0%
TTGATCCAAAAGGTAATTGA+AGG - chr6.2:40114021-40114040 MS.gene058903:CDS 30.0%
!!! GAAGATTTTTTCCCTAAGTA+TGG + chr6.2:40113704-40113723 None:intergenic 30.0%
CGGTGAATATAGCTTGAATT+AGG + chr6.2:40113951-40113970 None:intergenic 35.0%
GGAACCAACAACAAATTTGA+TGG - chr6.2:40114210-40114229 MS.gene058903:CDS 35.0%
GGGATGATTTATTTGTATCC+AGG - chr6.2:40114231-40114250 MS.gene058903:CDS 35.0%
TGATGAACGTAACAAAGAGT+GGG - chr6.2:40114062-40114081 MS.gene058903:CDS 35.0%
TTGATGAACGTAACAAAGAG+TGG - chr6.2:40114061-40114080 MS.gene058903:CDS 35.0%
!! CATCAATAGCTTTAGCATCA+TGG + chr6.2:40114047-40114066 None:intergenic 35.0%
!! CATCCCATCAAATTTGTTGT+TGG + chr6.2:40114217-40114236 None:intergenic 35.0%
!!! TGTTGACTTGATTTTGTCGA+TGG + chr6.2:40113743-40113762 None:intergenic 35.0%
ACCATTCTTGGAAAGAACCA+AGG - chr6.2:40113507-40113526 MS.gene058903:CDS 40.0%
GAGGTAAAGGATGAACAGAA+TGG - chr6.2:40113601-40113620 MS.gene058903:CDS 40.0%
GGTTCTTTCCAAGAATGGTT+GGG + chr6.2:40113506-40113525 None:intergenic 40.0%
TATTTGTATCCAGGCAAGAG+TGG - chr6.2:40114240-40114259 MS.gene058903:CDS 40.0%
TCAAGCTATATTCACCGTCA+CGG - chr6.2:40113954-40113973 MS.gene058903:CDS 40.0%
TGAATTAACATTGGAGCCTG+AGG - chr6.2:40114281-40114300 MS.gene058903:CDS 40.0%
TGGAAGTTCACCTAGGTTTA+AGG - chr6.2:40114140-40114159 MS.gene058903:CDS 40.0%
TGGTTCTTTCCAAGAATGGT+TGG + chr6.2:40113507-40113526 None:intergenic 40.0%
TGTGAACACTGTGTAGTCTT+CGG + chr6.2:40113869-40113888 None:intergenic 40.0%
TTCATCCTTTACCTCACCAT+TGG + chr6.2:40113596-40113615 None:intergenic 40.0%
TTTAACCATGCTGTCCTTGA+TGG - chr6.2:40113415-40113434 MS.gene058903:CDS 40.0%
! AATGATTTTGAACCGTCCGA+TGG + chr6.2:40113781-40113800 None:intergenic 40.0%
! CATGGCCTTCAATTACCTTT+TGG + chr6.2:40114029-40114048 None:intergenic 40.0%
AAATATGAGTGGAGAGAGCC+TGG + chr6.2:40113813-40113832 None:intergenic 45.0%
AAGCCAGAGATTGTGAGAAG+TGG - chr6.2:40114189-40114208 MS.gene058903:CDS 45.0%
AAGCTTCACACGTGTGTTTC+GGG + chr6.2:40113533-40113552 None:intergenic 45.0%
AATGGTTGGGCTGTTGTGAT+GGG + chr6.2:40113493-40113512 None:intergenic 45.0%
AGGCTCTCTCCACTCATATT+TGG - chr6.2:40113812-40113831 MS.gene058903:CDS 45.0%
AGGTTTCCAAAGTATGCCTC+CGG + chr6.2:40113931-40113950 None:intergenic 45.0%
AGTCAACCAAACCCTTCCAT+CGG - chr6.2:40113762-40113781 MS.gene058903:CDS 45.0%
ATCAGCCAATGGTGAGGTAA+AGG - chr6.2:40113588-40113607 MS.gene058903:CDS 45.0%
ATGTTCCATCAAGGACAGCA+TGG + chr6.2:40113423-40113442 None:intergenic 45.0%
CAAGCTTCACACGTGTGTTT+CGG + chr6.2:40113534-40113553 None:intergenic 45.0%
GGTGTGAATTGTGTTGCAGT+TGG - chr6.2:40114120-40114139 MS.gene058903:CDS 45.0%
GTGAACACTGTGTAGTCTTC+GGG + chr6.2:40113868-40113887 None:intergenic 45.0%
GTGGCACTTCATGACTTCAT+GGG - chr6.2:40113447-40113466 MS.gene058903:CDS 45.0%
GTTCCACTTCTCACAATCTC+TGG + chr6.2:40114195-40114214 None:intergenic 45.0%
TTCAACCTTTGCCTCACCAT+TGG + chr6.2:40113641-40113660 None:intergenic 45.0%
TTGCAGTTGGAAGTTCACCT+AGG - chr6.2:40114133-40114152 MS.gene058903:CDS 45.0%
! ATTTTGAACCGTCCGATGGA+AGG + chr6.2:40113777-40113796 None:intergenic 45.0%
! GATTTTGTCGATGGCTGACT+CGG + chr6.2:40113734-40113753 None:intergenic 45.0%
! GCCTTGGTTCTTTCCAAGAA+TGG + chr6.2:40113511-40113530 None:intergenic 45.0%
! TTTACCTCACCATTGGCTGA+TGG + chr6.2:40113589-40113608 None:intergenic 45.0%
! TTTTGAACCGTCCGATGGAA+GGG + chr6.2:40113776-40113795 None:intergenic 45.0%
!! ATCAAAGAAGCGCCGAATTG+TGG + chr6.2:40114006-40114025 None:intergenic 45.0%
AACATTGGAGCCTGAGGCTA+TGG - chr6.2:40114287-40114306 MS.gene058903:CDS 50.0%
AACCAAACCCTTCCATCGGA+CGG - chr6.2:40113766-40113785 MS.gene058903:CDS 50.0%
ACATTGGAGCCTGAGGCTAT+GGG - chr6.2:40114288-40114307 MS.gene058903:CDS 50.0%
ATCAGCCAATGGTGAGGCAA+AGG - chr6.2:40113633-40113652 MS.gene058903:CDS 50.0%
CACAACAGCCCAACCATTCT+TGG - chr6.2:40113495-40113514 MS.gene058903:CDS 50.0%
CATCAGTCAAAGGTGAGGCA+AGG - chr6.2:40113677-40113696 MS.gene058903:CDS 50.0%
CCTCACCTTTGACTGATGGT+GGG + chr6.2:40113675-40113694 None:intergenic 50.0%
CGGCGCTTCTTTGATCCAAA+AGG - chr6.2:40114011-40114030 MS.gene058903:CDS 50.0%
CGTGGCACTTCATGACTTCA+TGG - chr6.2:40113446-40113465 MS.gene058903:CDS 50.0%
CTTGCCTCACCTTTGACTGA+TGG + chr6.2:40113679-40113698 None:intergenic 50.0%
GAATGGTTGGGCTGTTGTGA+TGG + chr6.2:40113494-40113513 None:intergenic 50.0%
GGGAAGGTTGGAGCAAGATA+AGG - chr6.2:40114308-40114327 MS.gene058903:CDS 50.0%
TCCTTGATGGAACATCCACG+TGG - chr6.2:40113428-40113447 MS.gene058903:CDS 50.0%
TGAGGCAAGGCCCATACTTA+GGG - chr6.2:40113690-40113709 MS.gene058903:CDS 50.0%
TGTATCCAGGCAAGAGTGGA+GGG - chr6.2:40114244-40114263 MS.gene058903:CDS 50.0%
TTGTATCCAGGCAAGAGTGG+AGG - chr6.2:40114243-40114262 MS.gene058903:CDS 50.0%
! CTCACCTTTGACTGATGGTG+GGG + chr6.2:40113674-40113693 None:intergenic 50.0%
! TGAAGTCATGAAGTGCCACG+TGG + chr6.2:40113446-40113465 None:intergenic 50.0%
! TTTGCCTCACCATTGGCTGA+TGG + chr6.2:40113634-40113653 None:intergenic 50.0%
!! AAAGAAGCGCCGAATTGTGG+CGG + chr6.2:40114003-40114022 None:intergenic 50.0%
!! TCACCTTTGACTGATGGTGG+GGG + chr6.2:40113673-40113692 None:intergenic 50.0%
!!! CGGGTTTTAGTTCACGTGCA+AGG + chr6.2:40113849-40113868 None:intergenic 50.0%
AACCGTCCGATGGAAGGGTT+TGG + chr6.2:40113771-40113790 None:intergenic 55.0%
ACCACCATCAGCCAATGGTG+AGG - chr6.2:40113582-40113601 MS.gene058903:CDS 55.0%
ACGAGTGAACCCACCAATGC+CGG - chr6.2:40113909-40113928 MS.gene058903:CDS 55.0%
AGCACCATCAGCCAATGGTG+AGG - chr6.2:40113627-40113646 MS.gene058903:CDS 55.0%
ATATTCACCGTCACGGCTGC+TGG - chr6.2:40113961-40113980 MS.gene058903:CDS 55.0%
CACGTGGCGCCAAATATGAG+TGG + chr6.2:40113824-40113843 None:intergenic 55.0%
CCAAAGTATGCCTCCGGCAT+TGG + chr6.2:40113925-40113944 None:intergenic 55.0%
CCCACCATCAGTCAAAGGTG+AGG - chr6.2:40113672-40113691 MS.gene058903:CDS 55.0%
GAGGCAAAGGTTGAACCCGA+AGG - chr6.2:40113646-40113665 MS.gene058903:CDS 55.0%
GCCACGTGGATGTTCCATCA+AGG + chr6.2:40113432-40113451 None:intergenic 55.0%
GCCTCACCTTTGACTGATGG+TGG + chr6.2:40113676-40113695 None:intergenic 55.0%
GGGTCCACCACTGCATATCT+CGG + chr6.2:40113473-40113492 None:intergenic 55.0%
GTGAGGCAAGGCCCATACTT+AGG - chr6.2:40113689-40113708 MS.gene058903:CDS 55.0%
TATTCACCGTCACGGCTGCT+GGG - chr6.2:40113962-40113981 MS.gene058903:CDS 55.0%
TCATGGGCCGAGATATGCAG+TGG - chr6.2:40113463-40113482 MS.gene058903:CDS 55.0%
TCCAACCTTCCCATAGCCTC+AGG + chr6.2:40114300-40114319 None:intergenic 55.0%
! AAGTATGCCTCCGGCATTGG+TGG + chr6.2:40113922-40113941 None:intergenic 55.0%
! ACCTCACCATTGGCTGATGG+TGG + chr6.2:40113586-40113605 None:intergenic 55.0%
! CACCATTGGCTGATGGTGCT+AGG + chr6.2:40113627-40113646 None:intergenic 55.0%
! CCAATGCCGGAGGCATACTT+TGG - chr6.2:40113922-40113941 MS.gene058903:CDS 55.0%
!! AAGAAGCGCCGAATTGTGGC+GGG + chr6.2:40114002-40114021 None:intergenic 55.0%
!! AGTATGCCTCCGGCATTGGT+GGG + chr6.2:40113921-40113940 None:intergenic 55.0%
!! CACCATTGGCTGATGGTGGT+GGG + chr6.2:40113582-40113601 None:intergenic 55.0%
!! TCACCATTGGCTGATGGTGG+TGG + chr6.2:40113583-40113602 None:intergenic 55.0%
AGTGAACCCACCAATGCCGG+AGG - chr6.2:40113912-40113931 MS.gene058903:CDS 60.0%
ATCCAGGCAAGAGTGGAGGG+AGG - chr6.2:40114247-40114266 MS.gene058903:CDS 60.0%
CAAAAGCCCAGCAGCCGTGA+CGG + chr6.2:40113971-40113990 None:intergenic 60.0%
CACACGTGTGTTTCGGGCCT+TGG + chr6.2:40113527-40113546 None:intergenic 60.0%
GCCTGAGGCTATGGGAAGGT+TGG - chr6.2:40114296-40114315 MS.gene058903:CDS 60.0%
GGCCTAGCACCATCAGCCAA+TGG - chr6.2:40113622-40113641 MS.gene058903:CDS 60.0%
GGTCCCCCACCATCAGTCAA+AGG - chr6.2:40113667-40113686 MS.gene058903:CDS 60.0%
GTTCACGTGCAAGGCTCACG+TGG + chr6.2:40113840-40113859 None:intergenic 60.0%
TGGAGCCTGAGGCTATGGGA+AGG - chr6.2:40114292-40114311 MS.gene058903:CDS 60.0%
TGGGCCGAGATATGCAGTGG+TGG - chr6.2:40113466-40113485 MS.gene058903:CDS 60.0%
!! ACTGATGGTGGGGGACCTTC+GGG + chr6.2:40113664-40113683 None:intergenic 60.0%
!! GACTGATGGTGGGGGACCTT+CGG + chr6.2:40113665-40113684 None:intergenic 60.0%
!! GCTGATGGTGGTGGGCCTTT+GGG + chr6.2:40113574-40113593 None:intergenic 60.0%
CTCCTCCCTCCACTCTTGCC+TGG + chr6.2:40114252-40114271 None:intergenic 65.0%
CTCTCCCTACCCGAGCCCAA+AGG - chr6.2:40113556-40113575 MS.gene058903:CDS 65.0%
CTTTGGGCTCGGGTAGGGAG+AGG + chr6.2:40113558-40113577 None:intergenic 65.0%
GCGGCTCACCCGCCACAATT+CGG - chr6.2:40113991-40114010 MS.gene058903:CDS 65.0%
GGCCCACCACCATCAGCCAA+TGG - chr6.2:40113577-40113596 MS.gene058903:CDS 65.0%
TGGGCCTTTGGGCTCGGGTA+GGG + chr6.2:40113563-40113582 None:intergenic 65.0%
! CACGGCTGCTGGGCTTTTGG+CGG - chr6.2:40113972-40113991 MS.gene058903:CDS 65.0%
! CGTCACGGCTGCTGGGCTTT+TGG - chr6.2:40113969-40113988 MS.gene058903:CDS 65.0%
!! GGCTGATGGTGGTGGGCCTT+TGG + chr6.2:40113575-40113594 None:intergenic 65.0%
!! TGGTGGTGGGCCTTTGGGCT+CGG + chr6.2:40113569-40113588 None:intergenic 65.0%
GTGGGCCTTTGGGCTCGGGT+AGG + chr6.2:40113564-40113583 None:intergenic 70.0%
!! GGTGGTGGGCCTTTGGGCTC+GGG + chr6.2:40113568-40113587 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 40113403 40114350 40113403 ID=MS.gene058903
chr6.2 mRNA 40113403 40114350 40113403 ID=MS.gene058903.t1;Parent=MS.gene058903
chr6.2 exon 40113403 40114350 40113403 ID=MS.gene058903.t1.exon1;Parent=MS.gene058903.t1
chr6.2 CDS 40113403 40114350 40113403 ID=cds.MS.gene058903.t1;Parent=MS.gene058903.t1
Gene Sequence

>MS.gene058903

ATGGGCTTGGCTTTTAACCATGCTGTCCTTGATGGAACATCCACGTGGCACTTCATGACTTCATGGGCCGAGATATGCAGTGGTGGACCCATCACAACAGCCCAACCATTCTTGGAAAGAACCAAGGCCCGAAACACACGTGTGAAGCTTGACCTCTCCCTACCCGAGCCCAAAGGCCCACCACCATCAGCCAATGGTGAGGTAAAGGATGAACAGAATGGCCTAGCACCATCAGCCAATGGTGAGGCAAAGGTTGAACCCGAAGGTCCCCCACCATCAGTCAAAGGTGAGGCAAGGCCCATACTTAGGGAAAAAATCTTCAAATTTTCCGAGTCAGCCATCGACAAAATCAAGTCAACAGTCAACCAAACCCTTCCATCGGACGGTTCAAAATCATTCTCAACTTTCCAGGCTCTCTCCACTCATATTTGGCGCCACGTGAGCCTTGCACGTGAACTAAAACCCGAAGACTACACAGTGTTCACAGTCTTCGCAGACTGTAGAAAACGAGTGAACCCACCAATGCCGGAGGCATACTTTGGAAACCTAATTCAAGCTATATTCACCGTCACGGCTGCTGGGCTTTTGGCGGCTCACCCGCCACAATTCGGCGCTTCTTTGATCCAAAAGGTAATTGAAGGCCATGATGCTAAAGCTATTGATGAACGTAACAAAGAGTGGGAGAGTGCACCCAAGATTTTTCAATTCAAAGATGCTGGTGTGAATTGTGTTGCAGTTGGAAGTTCACCTAGGTTTAAGGTTTATGACATTGATTTTGGATTTGGGAAGCCAGAGATTGTGAGAAGTGGAACCAACAACAAATTTGATGGGATGATTTATTTGTATCCAGGCAAGAGTGGAGGGAGGAGCATTGATGTTGAATTAACATTGGAGCCTGAGGCTATGGGAAGGTTGGAGCAAGATAAGGAATTTCTTATGGAAGTATAA

Protein sequence

>MS.gene058903.t1

MGLAFNHAVLDGTSTWHFMTSWAEICSGGPITTAQPFLERTKARNTRVKLDLSLPEPKGPPPSANGEVKDEQNGLAPSANGEAKVEPEGPPPSVKGEARPILREKIFKFSESAIDKIKSTVNQTLPSDGSKSFSTFQALSTHIWRHVSLARELKPEDYTVFTVFADCRKRVNPPMPEAYFGNLIQAIFTVTAAGLLAAHPPQFGASLIQKVIEGHDAKAIDERNKEWESAPKIFQFKDAGVNCVAVGSSPRFKVYDIDFGFGKPEIVRSGTNNKFDGMIYLYPGKSGGRSIDVELTLEPEAMGRLEQDKEFLMEV