Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069369.t1 | XP_013464732.1 | 97.6 | 253 | 6 | 0 | 1 | 253 | 1 | 253 | 1.60E-144 | 521.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069369.t1 | P24805 | 40.9 | 149 | 87 | 1 | 1 | 149 | 1 | 148 | 3.1e-27 | 123.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069369.t1 | B7FHV5 | 97.6 | 253 | 6 | 0 | 1 | 253 | 1 | 253 | 1.2e-144 | 521.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052166 | MS.gene069369 | 0.812145 | 4.91E-51 | -1.69E-46 |
| MS.gene053401 | MS.gene069369 | 0.802348 | 5.85E-49 | -1.69E-46 |
| MS.gene056623 | MS.gene069369 | 0.845163 | 4.82E-59 | -1.69E-46 |
| MS.gene059856 | MS.gene069369 | 0.946028 | 1.01E-104 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069369.t1 | MTR_2g079670 | 97.628 | 253 | 6 | 0 | 1 | 253 | 1 | 253 | 0.0 | 516 |
| MS.gene069369.t1 | MTR_2g079670 | 96.859 | 191 | 6 | 0 | 1 | 191 | 1 | 191 | 2.90e-137 | 384 |
| MS.gene069369.t1 | MTR_2g079670 | 98.361 | 183 | 3 | 0 | 71 | 253 | 22 | 204 | 5.19e-135 | 379 |
| MS.gene069369.t1 | MTR_2g013140 | 66.000 | 250 | 84 | 1 | 1 | 250 | 1 | 249 | 2.50e-117 | 336 |
| MS.gene069369.t1 | MTR_4g088955 | 60.956 | 251 | 97 | 1 | 1 | 250 | 64 | 314 | 7.38e-107 | 311 |
| MS.gene069369.t1 | MTR_2g013140 | 64.398 | 191 | 67 | 1 | 1 | 191 | 1 | 190 | 2.13e-81 | 242 |
| MS.gene069369.t1 | MTR_1g041380 | 47.012 | 251 | 124 | 4 | 1 | 247 | 1 | 246 | 4.30e-77 | 234 |
| MS.gene069369.t1 | MTR_1g102680 | 47.222 | 252 | 122 | 5 | 1 | 247 | 1 | 246 | 1.41e-76 | 232 |
| MS.gene069369.t1 | MTR_2g022520 | 41.631 | 233 | 127 | 6 | 1 | 230 | 1 | 227 | 4.39e-55 | 177 |
| MS.gene069369.t1 | MTR_4g117050 | 39.056 | 233 | 134 | 6 | 1 | 230 | 1 | 228 | 7.88e-54 | 174 |
| MS.gene069369.t1 | MTR_1g041380 | 44.560 | 193 | 100 | 3 | 1 | 191 | 1 | 188 | 1.27e-51 | 167 |
| MS.gene069369.t1 | MTR_4g117050 | 44.242 | 165 | 89 | 2 | 67 | 230 | 21 | 183 | 3.60e-47 | 155 |
| MS.gene069369.t1 | MTR_1g019625 | 75.926 | 54 | 6 | 1 | 113 | 159 | 14 | 67 | 3.26e-19 | 79.3 |
| MS.gene069369.t1 | MTR_7g059340 | 76.316 | 38 | 9 | 0 | 114 | 151 | 18 | 55 | 1.06e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069369.t1 | AT4G27450 | 78.629 | 248 | 52 | 1 | 1 | 247 | 1 | 248 | 3.65e-147 | 411 |
| MS.gene069369.t1 | AT3G15450 | 68.675 | 249 | 74 | 3 | 1 | 247 | 1 | 247 | 3.06e-125 | 356 |
| MS.gene069369.t1 | AT3G15450 | 66.839 | 193 | 60 | 3 | 1 | 191 | 1 | 191 | 4.51e-89 | 263 |
| MS.gene069369.t1 | AT5G43830 | 48.810 | 252 | 119 | 4 | 1 | 247 | 1 | 247 | 5.78e-80 | 241 |
| MS.gene069369.t1 | AT3G15450 | 64.286 | 182 | 58 | 4 | 1 | 180 | 1 | 177 | 2.40e-75 | 227 |
| MS.gene069369.t1 | AT3G22850 | 44.939 | 247 | 133 | 1 | 1 | 247 | 1 | 244 | 6.30e-74 | 226 |
| MS.gene069369.t1 | AT5G19140 | 42.241 | 232 | 127 | 5 | 1 | 230 | 1 | 227 | 2.92e-56 | 180 |
| MS.gene069369.t1 | AT5G19140 | 48.521 | 169 | 84 | 2 | 63 | 230 | 25 | 191 | 4.18e-51 | 166 |
| MS.gene069369.t1 | AT5G19140 | 39.655 | 232 | 121 | 6 | 1 | 230 | 1 | 215 | 2.42e-48 | 159 |
Find 60 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTTGATGAACAGAAAA+AGG | 0.221761 | 2.3:+18005044 | None:intergenic |
| TGTTTCTGATTGAAGCTTAT+AGG | 0.236090 | 2.3:-18004485 | MS.gene069369:CDS |
| ACAACTTGATCTGGTGGATA+TGG | 0.300897 | 2.3:+18004444 | None:intergenic |
| TGACATATACTGCTTATTCT+TGG | 0.304694 | 2.3:-18004574 | MS.gene069369:CDS |
| TCCTTACTGAACAAGCAATA+TGG | 0.322158 | 2.3:-18004534 | MS.gene069369:CDS |
| GACATATACTGCTTATTCTT+GGG | 0.337382 | 2.3:-18004573 | MS.gene069369:CDS |
| GCAGGGCTATTCAGCTCTTC+AGG | 0.347531 | 2.3:+18005197 | None:intergenic |
| TGGTGGATTGAAGTTGTATT+GGG | 0.352740 | 2.3:-18004248 | MS.gene069369:CDS |
| TTCATAGAACAAGTATTATC+AGG | 0.367478 | 2.3:+18005107 | None:intergenic |
| GATGTGTGGGGCCAACTTTA+AGG | 0.380784 | 2.3:-18003658 | MS.gene069369:CDS |
| TTTAAGCCTTTGTATGATGC+AGG | 0.380881 | 2.3:+18005179 | None:intergenic |
| AATACTTGTTCTATGAACTT+TGG | 0.381957 | 2.3:-18005101 | MS.gene069369:CDS |
| AACCCTCTTGTACAACATTA+AGG | 0.386014 | 2.3:+18004188 | None:intergenic |
| GTTGTTTATGACAGCACATA+TGG | 0.386283 | 2.3:-18004393 | MS.gene069369:CDS |
| TTGCTCCCATTCCATCCAAT+TGG | 0.404613 | 2.3:+18003587 | None:intergenic |
| ATGGTGGATTGAAGTTGTAT+TGG | 0.415848 | 2.3:-18004249 | MS.gene069369:CDS |
| CAAGTTGTTAAGGAACTTGA+TGG | 0.416575 | 2.3:-18004429 | MS.gene069369:CDS |
| TATTGGGGTATTGCCGCTGA+TGG | 0.425828 | 2.3:-18004232 | MS.gene069369:CDS |
| TCCACCAGATCAAGTTGTTA+AGG | 0.433324 | 2.3:-18004439 | MS.gene069369:CDS |
| AGAATTTCTTCAGAAAGCTT+AGG | 0.436367 | 2.3:+18005152 | None:intergenic |
| AGTTCCTTAACAACTTGATC+TGG | 0.448722 | 2.3:+18004435 | None:intergenic |
| ACCATATTGCTTGTTCAGTA+AGG | 0.461779 | 2.3:+18004533 | None:intergenic |
| GAACTTATCAACCTTAAAGT+TGG | 0.462511 | 2.3:+18003647 | None:intergenic |
| GTGAATCCAATTGGATGGAA+TGG | 0.469235 | 2.3:-18003593 | MS.gene069369:CDS |
| GTGGATGAGCAAGACCTTTG+TGG | 0.473208 | 2.3:+18005219 | None:intergenic |
| ATTGCCTTCAACTTGTTCAA+TGG | 0.480350 | 2.3:+18003705 | None:intergenic |
| GCATCCATTGAACAAGTTGA+AGG | 0.484376 | 2.3:-18003709 | MS.gene069369:CDS |
| CAAGCAATATGGTTTGTCAA+AGG | 0.499784 | 2.3:-18004523 | MS.gene069369:CDS |
| ACTCCTTCACTGTCTATCCT+TGG | 0.503821 | 2.3:+18003681 | None:intergenic |
| CAATTGATACCTGCTGGAAA+AGG | 0.504528 | 2.3:+18004148 | None:intergenic |
| AAGCAATATGGTTTGTCAAA+GGG | 0.505741 | 2.3:-18004522 | MS.gene069369:CDS |
| TGAATCCAATTGGATGGAAT+GGG | 0.508806 | 2.3:-18003592 | MS.gene069369:CDS |
| TTTATGCAGGGTTCTGATGG+TGG | 0.519132 | 2.3:-18004265 | MS.gene069369:intron |
| TCCTTAACAACTTGATCTGG+TGG | 0.527113 | 2.3:+18004438 | None:intergenic |
| TTAAGCCTTTGTATGATGCA+GGG | 0.539695 | 2.3:+18005180 | None:intergenic |
| TGTATGTTTCATAGTGAAGG+AGG | 0.544867 | 2.3:-18003747 | MS.gene069369:CDS |
| GAGTTGGTAGTGAATCCAAT+TGG | 0.553165 | 2.3:-18003602 | MS.gene069369:CDS |
| ACATATACTGCTTATTCTTG+GGG | 0.555358 | 2.3:-18004572 | MS.gene069369:CDS |
| TGGTAGTGAATCCAATTGGA+TGG | 0.564629 | 2.3:-18003598 | MS.gene069369:CDS |
| ATTGGGGTATTGCCGCTGAT+GGG | 0.568391 | 2.3:-18004231 | MS.gene069369:CDS |
| GTCAACAGTATTCCTCGAGT+TGG | 0.573016 | 2.3:-18003618 | MS.gene069369:CDS |
| GGGTGTATGTTTCATAGTGA+AGG | 0.585970 | 2.3:-18003750 | MS.gene069369:CDS |
| GTGGATATGGACCACGGTCA+CGG | 0.586213 | 2.3:+18004457 | None:intergenic |
| GGGCTATTCAGCTCTTCAGG+TGG | 0.589074 | 2.3:+18005200 | None:intergenic |
| ACCTGCTGGAAAAGGAGCAA+AGG | 0.590844 | 2.3:+18004156 | None:intergenic |
| TGACCTTAATGTTGTACAAG+AGG | 0.595852 | 2.3:-18004191 | MS.gene069369:CDS |
| GGTGGATTGAAGTTGTATTG+GGG | 0.606006 | 2.3:-18004247 | MS.gene069369:CDS |
| GACAGTGAAGGAGTGATGTG+TGG | 0.622107 | 2.3:-18003672 | MS.gene069369:CDS |
| ACAGTGAAGGAGTGATGTGT+GGG | 0.629204 | 2.3:-18003671 | MS.gene069369:CDS |
| AATAGCCCTGCATCATACAA+AGG | 0.630008 | 2.3:-18005185 | MS.gene069369:CDS |
| ATAAGCTTCAATCAGAAACA+TGG | 0.642892 | 2.3:+18004488 | None:intergenic |
| ACAAGTTGAAGGCAATGCCA+AGG | 0.645708 | 2.3:-18003698 | MS.gene069369:CDS |
| TGTGCTGTCATAAACAACAA+AGG | 0.658420 | 2.3:+18004398 | None:intergenic |
| TATAGGACACTCCGTGACCG+TGG | 0.676131 | 2.3:-18004468 | MS.gene069369:CDS |
| ATGCCAAGGATAGACAGTGA+AGG | 0.681425 | 2.3:-18003684 | MS.gene069369:CDS |
| GACCTTAATGTTGTACAAGA+GGG | 0.690369 | 2.3:-18004190 | MS.gene069369:CDS |
| TTGGATTCACTACCAACTCG+AGG | 0.697059 | 2.3:+18003606 | None:intergenic |
| GATCACAACAGACCCATCAG+CGG | 0.715155 | 2.3:+18004219 | None:intergenic |
| GATCTGGTGGATATGGACCA+CGG | 0.727078 | 2.3:+18004451 | None:intergenic |
| CAGTGAAGGAGTGATGTGTG+GGG | 0.800044 | 2.3:-18003670 | MS.gene069369:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTAACTCTAAATA+CGG | + | chr2.3:18004893-18004912 | None:intergenic | 10.0% |
| !!! | ATCAATTTTTCCAATAAAAA+AGG | + | chr2.3:18004077-18004096 | None:intergenic | 15.0% |
| !!! | ATTTTGTTTTCAAGATAAAT+GGG | + | chr2.3:18004709-18004728 | None:intergenic | 15.0% |
| !! | AAAACAAAATCTCTTCAATT+TGG | - | chr2.3:18004719-18004738 | MS.gene069369:intron | 20.0% |
| !! | TCCAACATAAAAGTTTAATA+CGG | - | chr2.3:18003988-18004007 | MS.gene069369:intron | 20.0% |
| !! | TTTGTTAGATCAATATGATA+CGG | - | chr2.3:18004852-18004871 | MS.gene069369:intron | 20.0% |
| !!! | CATCTTTAATTCCTTTTATA+AGG | - | chr2.3:18003955-18003974 | MS.gene069369:intron | 20.0% |
| !!! | GATTTTGTTTTCAAGATAAA+TGG | + | chr2.3:18004710-18004729 | None:intergenic | 20.0% |
| !!! | TTTTAGTACACCTTTTTTTA+TGG | - | chr2.3:18003829-18003848 | MS.gene069369:intron | 20.0% |
| ! | AATACTTGTTCTATGAACTT+TGG | - | chr2.3:18003713-18003732 | MS.gene069369:CDS | 25.0% |
| ! | AGAATTGTTAACAAAGAACA+TGG | + | chr2.3:18004493-18004512 | None:intergenic | 25.0% |
| ! | TTCATAGAACAAGTATTATC+AGG | + | chr2.3:18003710-18003729 | None:intergenic | 25.0% |
| !! | ACCGTATTAAACTTTTATGT+TGG | + | chr2.3:18003992-18004011 | None:intergenic | 25.0% |
| !! | TCCTTTTATAAGGATGAATT+CGG | - | chr2.3:18003965-18003984 | MS.gene069369:intron | 25.0% |
| !!! | ATGATGTTTGTTTTTTATGC+AGG | - | chr2.3:18004536-18004555 | MS.gene069369:CDS | 25.0% |
| !!! | TGATGTTTGTTTTTTATGCA+GGG | - | chr2.3:18004537-18004556 | MS.gene069369:CDS | 25.0% |
| !!! | TTTTGAAATCATTGAATGCA+GGG | - | chr2.3:18005044-18005063 | MS.gene069369:intron | 25.0% |
| !!! | TTTTTGAAATCATTGAATGC+AGG | - | chr2.3:18005043-18005062 | MS.gene069369:intron | 25.0% |
| AACCTTTGATGAACAGAAAA+AGG | + | chr2.3:18003773-18003792 | None:intergenic | 30.0% | |
| ACATATACTGCTTATTCTTG+GGG | - | chr2.3:18004242-18004261 | MS.gene069369:CDS | 30.0% | |
| ACCGAATTCATCCTTATAAA+AGG | + | chr2.3:18003969-18003988 | None:intergenic | 30.0% | |
| AGAATTTCTTCAGAAAGCTT+AGG | + | chr2.3:18003665-18003684 | None:intergenic | 30.0% | |
| ATAAGCTTCAATCAGAAACA+TGG | + | chr2.3:18004329-18004348 | None:intergenic | 30.0% | |
| ATGTTATTAGTGCTAAGAGA+TGG | - | chr2.3:18004188-18004207 | MS.gene069369:CDS | 30.0% | |
| ATTACATCATAACCAACATG+TGG | - | chr2.3:18004746-18004765 | MS.gene069369:intron | 30.0% | |
| ATTGATGTTACTGACCAAAT+TGG | - | chr2.3:18004091-18004110 | MS.gene069369:intron | 30.0% | |
| CAAAGACGTGTATTATGTTA+CGG | - | chr2.3:18004032-18004051 | MS.gene069369:intron | 30.0% | |
| CACTTCAAACAAATTGTCAA+AGG | - | chr2.3:18005009-18005028 | MS.gene069369:intron | 30.0% | |
| GAACTTATCAACCTTAAAGT+TGG | + | chr2.3:18005170-18005189 | None:intergenic | 30.0% | |
| GACATATACTGCTTATTCTT+GGG | - | chr2.3:18004241-18004260 | MS.gene069369:CDS | 30.0% | |
| TAGATCAATATGATACGGTT+TGG | - | chr2.3:18004857-18004876 | MS.gene069369:intron | 30.0% | |
| TGACATATACTGCTTATTCT+TGG | - | chr2.3:18004240-18004259 | MS.gene069369:CDS | 30.0% | |
| TTCGTAGCAACCATAAAAAA+AGG | + | chr2.3:18003842-18003861 | None:intergenic | 30.0% | |
| ! | AAGCAATATGGTTTGTCAAA+GGG | - | chr2.3:18004292-18004311 | MS.gene069369:intron | 30.0% |
| ! | TGTTTCTGATTGAAGCTTAT+AGG | - | chr2.3:18004329-18004348 | MS.gene069369:intron | 30.0% |
| ! | TTTTGTAGCAACCATGTTAT+TGG | + | chr2.3:18004149-18004168 | None:intergenic | 30.0% |
| !! | ATTTTTGCAGGTTGTTTTGT+GGG | - | chr2.3:18004212-18004231 | MS.gene069369:CDS | 30.0% |
| !! | TATTTTTGCAGGTTGTTTTG+TGG | - | chr2.3:18004211-18004230 | MS.gene069369:CDS | 30.0% |
| !!! | CAGTTGCATACCTTTTTTAT+TGG | - | chr2.3:18004064-18004083 | MS.gene069369:intron | 30.0% |
| AACCCTCTTGTACAACATTA+AGG | + | chr2.3:18004629-18004648 | None:intergenic | 35.0% | |
| AAGTGTCTGAGTCTCTAATT+TGG | + | chr2.3:18004994-18005013 | None:intergenic | 35.0% | |
| AATGATTGTTGGATCGAGAT+CGG | + | chr2.3:18004934-18004953 | None:intergenic | 35.0% | |
| ACCATATTGCTTGTTCAGTA+AGG | + | chr2.3:18004284-18004303 | None:intergenic | 35.0% | |
| AGTTCCTTAACAACTTGATC+TGG | + | chr2.3:18004382-18004401 | None:intergenic | 35.0% | |
| CAAAGAATCGCAATCATATG+TGG | - | chr2.3:18003907-18003926 | MS.gene069369:intron | 35.0% | |
| CAAGTTGTTAAGGAACTTGA+TGG | - | chr2.3:18004385-18004404 | MS.gene069369:CDS | 35.0% | |
| CGTAACATAATACACGTCTT+TGG | + | chr2.3:18004034-18004053 | None:intergenic | 35.0% | |
| GACCTTAATGTTGTACAAGA+GGG | - | chr2.3:18004624-18004643 | MS.gene069369:intron | 35.0% | |
| GCTAACACATCAATGATTGT+TGG | + | chr2.3:18004945-18004964 | None:intergenic | 35.0% | |
| GTTGTTTATGACAGCACATA+TGG | - | chr2.3:18004421-18004440 | MS.gene069369:CDS | 35.0% | |
| TCCTTACTGAACAAGCAATA+TGG | - | chr2.3:18004280-18004299 | MS.gene069369:intron | 35.0% | |
| TGAACAGAAAAAGGCTTATC+AGG | + | chr2.3:18003764-18003783 | None:intergenic | 35.0% | |
| TGAATCCAATTGGATGGAAT+GGG | - | chr2.3:18005222-18005241 | MS.gene069369:CDS | 35.0% | |
| TGACCTTAATGTTGTACAAG+AGG | - | chr2.3:18004623-18004642 | MS.gene069369:intron | 35.0% | |
| TGTATGTTTCATAGTGAAGG+AGG | - | chr2.3:18005067-18005086 | MS.gene069369:CDS | 35.0% | |
| TGTGCTGTCATAAACAACAA+AGG | + | chr2.3:18004419-18004438 | None:intergenic | 35.0% | |
| TTAAGCCTTTGTATGATGCA+GGG | + | chr2.3:18003637-18003656 | None:intergenic | 35.0% | |
| TTTAAGCCTTTGTATGATGC+AGG | + | chr2.3:18003638-18003657 | None:intergenic | 35.0% | |
| TTTAATACGGTATCAGAGTC+TGG | - | chr2.3:18004001-18004020 | MS.gene069369:intron | 35.0% | |
| ! | AGCCTTTTTCTGTTCATCAA+AGG | - | chr2.3:18003768-18003787 | MS.gene069369:intron | 35.0% |
| ! | ATGTTGGCAATTTTCCACAA+AGG | - | chr2.3:18003581-18003600 | MS.gene069369:CDS | 35.0% |
| ! | ATTGCCTTCAACTTGTTCAA+TGG | + | chr2.3:18005112-18005131 | None:intergenic | 35.0% |
| ! | CAAGCAATATGGTTTGTCAA+AGG | - | chr2.3:18004291-18004310 | MS.gene069369:intron | 35.0% |
| !! | ATGGTGGATTGAAGTTGTAT+TGG | - | chr2.3:18004565-18004584 | MS.gene069369:CDS | 35.0% |
| !! | CTAAGAGATGGTATTTTTGC+AGG | - | chr2.3:18004200-18004219 | MS.gene069369:CDS | 35.0% |
| !! | TGGTGGATTGAAGTTGTATT+GGG | - | chr2.3:18004566-18004585 | MS.gene069369:CDS | 35.0% |
| !!! | TTTTTTATGCAGGGTTCTGA+TGG | - | chr2.3:18004546-18004565 | MS.gene069369:CDS | 35.0% |
| AATAGCCCTGCATCATACAA+AGG | - | chr2.3:18003629-18003648 | MS.gene069369:CDS | 40.0% | |
| ATTTGCTTGCGCCAATAACA+TGG | - | chr2.3:18004135-18004154 | MS.gene069369:intron | 40.0% | |
| CAATTGATACCTGCTGGAAA+AGG | + | chr2.3:18004669-18004688 | None:intergenic | 40.0% | |
| CATCATAACCAACATGTGGT+TGG | - | chr2.3:18004750-18004769 | MS.gene069369:intron | 40.0% | |
| GATGTTACTGACCAAATTGG+CGG | - | chr2.3:18004094-18004113 | MS.gene069369:intron | 40.0% | |
| GCTAAACAATTGATACCTGC+TGG | + | chr2.3:18004675-18004694 | None:intergenic | 40.0% | |
| GGGTGTATGTTTCATAGTGA+AGG | - | chr2.3:18005064-18005083 | MS.gene069369:CDS | 40.0% | |
| GTGAATCCAATTGGATGGAA+TGG | - | chr2.3:18005221-18005240 | MS.gene069369:CDS | 40.0% | |
| TCCTTAACAACTTGATCTGG+TGG | + | chr2.3:18004379-18004398 | None:intergenic | 40.0% | |
| TGCATGCAATCTAAATCCCT+TGG | + | chr2.3:18004792-18004811 | None:intergenic | 40.0% | |
| ! | ACAACTTGATCTGGTGGATA+TGG | + | chr2.3:18004373-18004392 | None:intergenic | 40.0% |
| ! | GCATCCATTGAACAAGTTGA+AGG | - | chr2.3:18005105-18005124 | MS.gene069369:CDS | 40.0% |
| ! | TCCACCAGATCAAGTTGTTA+AGG | - | chr2.3:18004375-18004394 | MS.gene069369:CDS | 40.0% |
| ! | TGGTAGTGAATCCAATTGGA+TGG | - | chr2.3:18005216-18005235 | MS.gene069369:CDS | 40.0% |
| !! | GAGTTGGTAGTGAATCCAAT+TGG | - | chr2.3:18005212-18005231 | MS.gene069369:CDS | 40.0% |
| !! | GGTGGATTGAAGTTGTATTG+GGG | - | chr2.3:18004567-18004586 | MS.gene069369:CDS | 40.0% |
| !!! | TGGAATTGTTTTTGCTGCAC+TGG | - | chr2.3:18004441-18004460 | MS.gene069369:CDS | 40.0% |
| ACAGTGAAGGAGTGATGTGT+GGG | - | chr2.3:18005143-18005162 | MS.gene069369:CDS | 45.0% | |
| ACTCCTTCACTGTCTATCCT+TGG | + | chr2.3:18005136-18005155 | None:intergenic | 45.0% | |
| ATGCCAAGGATAGACAGTGA+AGG | - | chr2.3:18005130-18005149 | MS.gene069369:CDS | 45.0% | |
| GTCAACAGTATTCCTCGAGT+TGG | - | chr2.3:18005196-18005215 | MS.gene069369:CDS | 45.0% | |
| TTGCTCCCATTCCATCCAAT+TGG | + | chr2.3:18005230-18005249 | None:intergenic | 45.0% | |
| TTGGATTCACTACCAACTCG+AGG | + | chr2.3:18005211-18005230 | None:intergenic | 45.0% | |
| ! | ACAAGTTGAAGGCAATGCCA+AGG | - | chr2.3:18005116-18005135 | MS.gene069369:CDS | 45.0% |
| ! | TTTATGCAGGGTTCTGATGG+TGG | - | chr2.3:18004549-18004568 | MS.gene069369:CDS | 45.0% |
| !! | AGTACTGATCTCCGCCAATT+TGG | + | chr2.3:18004108-18004127 | None:intergenic | 45.0% |
| ACCTGCTGGAAAAGGAGCAA+AGG | + | chr2.3:18004661-18004680 | None:intergenic | 50.0% | |
| CAGTGAAGGAGTGATGTGTG+GGG | - | chr2.3:18005144-18005163 | MS.gene069369:CDS | 50.0% | |
| GACAGTGAAGGAGTGATGTG+TGG | - | chr2.3:18005142-18005161 | MS.gene069369:CDS | 50.0% | |
| GATCACAACAGACCCATCAG+CGG | + | chr2.3:18004598-18004617 | None:intergenic | 50.0% | |
| GATGTGTGGGGCCAACTTTA+AGG | - | chr2.3:18005156-18005175 | MS.gene069369:CDS | 50.0% | |
| GTGGATGAGCAAGACCTTTG+TGG | + | chr2.3:18003598-18003617 | None:intergenic | 50.0% | |
| TCCGAGTGGTAAGACACCAA+GGG | - | chr2.3:18004773-18004792 | MS.gene069369:intron | 50.0% | |
| ! | GATCTGGTGGATATGGACCA+CGG | + | chr2.3:18004366-18004385 | None:intergenic | 50.0% |
| ! | TCCTTTGCTCCTTTTCCAGC+AGG | - | chr2.3:18004657-18004676 | MS.gene069369:intron | 50.0% |
| !! | ATTGGGGTATTGCCGCTGAT+GGG | - | chr2.3:18004583-18004602 | MS.gene069369:CDS | 50.0% |
| !! | TATTGGGGTATTGCCGCTGA+TGG | - | chr2.3:18004582-18004601 | MS.gene069369:CDS | 50.0% |
| !! | TCCCTTGGTGTCTTACCACT+CGG | + | chr2.3:18004777-18004796 | None:intergenic | 50.0% |
| CACTCGGACCAACCACATGT+TGG | + | chr2.3:18004761-18004780 | None:intergenic | 55.0% | |
| GCAGGGCTATTCAGCTCTTC+AGG | + | chr2.3:18003620-18003639 | None:intergenic | 55.0% | |
| GGGCTATTCAGCTCTTCAGG+TGG | + | chr2.3:18003617-18003636 | None:intergenic | 55.0% | |
| GTCCGAGTGGTAAGACACCA+AGG | - | chr2.3:18004772-18004791 | MS.gene069369:intron | 55.0% | |
| GTGGATATGGACCACGGTCA+CGG | + | chr2.3:18004360-18004379 | None:intergenic | 55.0% | |
| TATAGGACACTCCGTGACCG+TGG | - | chr2.3:18004346-18004365 | MS.gene069369:intron | 55.0% | |
| ! | CAACATGTGGTTGGTCCGAG+TGG | - | chr2.3:18004759-18004778 | MS.gene069369:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 18003581 | 18005255 | 18003581 | ID=MS.gene069369 |
| chr2.3 | mRNA | 18003581 | 18005255 | 18003581 | ID=MS.gene069369.t1;Parent=MS.gene069369 |
| chr2.3 | exon | 18005047 | 18005255 | 18005047 | ID=MS.gene069369.t1.exon1;Parent=MS.gene069369.t1 |
| chr2.3 | CDS | 18005047 | 18005255 | 18005047 | ID=cds.MS.gene069369.t1;Parent=MS.gene069369.t1 |
| chr2.3 | exon | 18004374 | 18004614 | 18004374 | ID=MS.gene069369.t1.exon2;Parent=MS.gene069369.t1 |
| chr2.3 | CDS | 18004374 | 18004614 | 18004374 | ID=cds.MS.gene069369.t1;Parent=MS.gene069369.t1 |
| chr2.3 | exon | 18004158 | 18004278 | 18004158 | ID=MS.gene069369.t1.exon3;Parent=MS.gene069369.t1 |
| chr2.3 | CDS | 18004158 | 18004278 | 18004158 | ID=cds.MS.gene069369.t1;Parent=MS.gene069369.t1 |
| chr2.3 | exon | 18003581 | 18003771 | 18003581 | ID=MS.gene069369.t1.exon4;Parent=MS.gene069369.t1 |
| chr2.3 | CDS | 18003581 | 18003771 | 18003581 | ID=cds.MS.gene069369.t1;Parent=MS.gene069369.t1 |
| Gene Sequence |
| Protein sequence |
