Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069556.t1 | XP_013447073.1 | 96.9 | 573 | 18 | 0 | 1 | 573 | 1 | 573 | 0.00E+00 | 1134.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069556.t1 | Q570C0 | 55.7 | 567 | 242 | 2 | 9 | 570 | 11 | 573 | 1.9e-181 | 637.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069556.t1 | A0A072U5G2 | 96.9 | 573 | 18 | 0 | 1 | 573 | 1 | 573 | 0.0e+00 | 1134.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051648 | MS.gene069556 | 0.805928 | 1.05E-49 | -1.69E-46 |
| MS.gene052150 | MS.gene069556 | 0.81097 | 8.84E-51 | -1.69E-46 |
| MS.gene055764 | MS.gene069556 | 0.832239 | 1.06E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069556.t1 | MTR_8g098695 | 96.859 | 573 | 18 | 0 | 1 | 573 | 1 | 573 | 0.0 | 1152 |
| MS.gene069556.t1 | MTR_4g091290 | 83.051 | 590 | 79 | 3 | 1 | 573 | 3 | 588 | 0.0 | 1006 |
| MS.gene069556.t1 | MTR_7g083610 | 55.323 | 573 | 241 | 5 | 9 | 573 | 6 | 571 | 0.0 | 638 |
| MS.gene069556.t1 | MTR_1g088950 | 52.982 | 570 | 259 | 2 | 9 | 573 | 16 | 581 | 0.0 | 635 |
| MS.gene069556.t1 | MTR_5g065490 | 49.650 | 572 | 273 | 6 | 9 | 573 | 53 | 616 | 0.0 | 544 |
| MS.gene069556.t1 | MTR_3g100860 | 49.129 | 574 | 276 | 6 | 11 | 573 | 25 | 593 | 0.0 | 543 |
| MS.gene069556.t1 | MTR_5g081870 | 32.657 | 591 | 357 | 15 | 6 | 573 | 10 | 582 | 5.91e-94 | 300 |
| MS.gene069556.t1 | MTR_3g070140 | 30.420 | 595 | 372 | 12 | 6 | 573 | 14 | 593 | 1.69e-79 | 262 |
| MS.gene069556.t1 | MTR_5g086490 | 44.355 | 124 | 54 | 1 | 9 | 132 | 6 | 114 | 1.61e-26 | 104 |
| MS.gene069556.t1 | MTR_2g021030 | 22.527 | 546 | 325 | 14 | 9 | 536 | 13 | 478 | 1.18e-22 | 102 |
| MS.gene069556.t1 | MTR_2g021030 | 23.705 | 502 | 286 | 15 | 9 | 493 | 13 | 434 | 4.74e-21 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069556.t1 | AT3G62980 | 55.439 | 570 | 245 | 2 | 9 | 573 | 11 | 576 | 0.0 | 629 |
| MS.gene069556.t1 | AT1G12820 | 52.234 | 582 | 251 | 5 | 9 | 573 | 6 | 577 | 0.0 | 619 |
| MS.gene069556.t1 | AT3G26810 | 53.739 | 575 | 251 | 5 | 9 | 573 | 6 | 575 | 0.0 | 618 |
| MS.gene069556.t1 | AT4G03190 | 52.972 | 572 | 261 | 3 | 6 | 573 | 4 | 571 | 0.0 | 611 |
| MS.gene069556.t1 | AT4G24390 | 49.913 | 575 | 271 | 6 | 9 | 573 | 56 | 623 | 0.0 | 565 |
| MS.gene069556.t1 | AT4G24390 | 49.913 | 575 | 271 | 6 | 9 | 573 | 56 | 623 | 0.0 | 565 |
| MS.gene069556.t1 | AT5G49980 | 49.033 | 569 | 281 | 5 | 9 | 573 | 56 | 619 | 0.0 | 548 |
| MS.gene069556.t1 | AT2G39940 | 31.472 | 591 | 369 | 12 | 4 | 573 | 13 | 588 | 3.31e-98 | 310 |
| MS.gene069556.t1 | AT4G15475 | 24.105 | 531 | 309 | 17 | 9 | 523 | 13 | 465 | 1.70e-21 | 99.0 |
| MS.gene069556.t1 | AT5G25350 | 28.390 | 236 | 125 | 11 | 315 | 519 | 166 | 388 | 3.46e-12 | 69.7 |
Find 114 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAATGATGTAAAGCTTTC+TGG | 0.104076 | 4.1:+5561327 | None:intergenic |
| TTCACACCCTTTCTGGTTTA+TGG | 0.116366 | 4.1:-5561065 | MS.gene069556:CDS |
| TCAACTTGGTTCCTGAAAAT+TGG | 0.125267 | 4.1:-5562463 | MS.gene069556:CDS |
| AAGAGTATTCACACCCTTTC+TGG | 0.148691 | 4.1:-5561072 | MS.gene069556:CDS |
| CTCCAAAGGCTTTCTGTATC+AGG | 0.215148 | 4.1:-5560451 | MS.gene069556:CDS |
| CAACTTGGTTCCTGAAAATT+GGG | 0.247042 | 4.1:-5562462 | MS.gene069556:CDS |
| GTTGAATGTTGAAGTAATTA+AGG | 0.252910 | 4.1:-5560155 | MS.gene069556:CDS |
| TCACACCCTTTCTGGTTTAT+GGG | 0.255188 | 4.1:-5561064 | MS.gene069556:CDS |
| GTCCTGACTTCACTCATTTC+CGG | 0.263095 | 4.1:-5560564 | MS.gene069556:CDS |
| CGATATTTACATCATTGTTT+AGG | 0.287424 | 4.1:+5561286 | None:intergenic |
| GTCCTAATCTTCGACGCCTT+TGG | 0.294619 | 4.1:-5560915 | MS.gene069556:CDS |
| TATGTTTATCGTTCTGTTGC+CGG | 0.306416 | 4.1:-5560097 | MS.gene069556:CDS |
| AGTGTAACACTTCTTATGTT+TGG | 0.320668 | 4.1:+5562512 | None:intergenic |
| TCCTAATCTTCGACGCCTTT+GGG | 0.326628 | 4.1:-5560914 | MS.gene069556:intron |
| GTCAGGTAATCTGGCTGATT+AGG | 0.330799 | 4.1:+5560526 | None:intergenic |
| CCCAGAAAGCTTTACATCAT+TGG | 0.331548 | 4.1:-5561328 | MS.gene069556:CDS |
| AATGGAGGGGCATCCCTTCT+TGG | 0.338658 | 4.1:+5560073 | None:intergenic |
| ACCTCGCATTTGAGTTTATA+GGG | 0.342489 | 4.1:-5560417 | MS.gene069556:CDS |
| TCAGGTAATCTGGCTGATTA+GGG | 0.351214 | 4.1:+5560527 | None:intergenic |
| TAAATCTTACTTGCAATTAG+TGG | 0.351338 | 4.1:+5562253 | None:intergenic |
| GAAGTGTTGAAACAAGTTCT+TGG | 0.355603 | 4.1:-5562674 | MS.gene069556:CDS |
| TTGACGAGGGCGTTGTGCAC+GGG | 0.358953 | 4.1:-5560699 | MS.gene069556:CDS |
| CCAATGATGTAAAGCTTTCT+GGG | 0.365785 | 4.1:+5561328 | None:intergenic |
| GGTTCATTCGTCAGGTAATC+TGG | 0.379909 | 4.1:+5560517 | None:intergenic |
| GACCTCGCATTTGAGTTTAT+AGG | 0.382931 | 4.1:-5560418 | MS.gene069556:CDS |
| GTGCACGGGGTTACTGAATC+AGG | 0.384151 | 4.1:-5560685 | MS.gene069556:CDS |
| GGGATGCAGTCTGTACTTGC+TGG | 0.384929 | 4.1:-5560337 | MS.gene069556:CDS |
| GAACCTATGGATGAGGCCTT+TGG | 0.395697 | 4.1:-5560499 | MS.gene069556:CDS |
| CATCCCCAAGTCACTGCTTC+CGG | 0.400099 | 4.1:+5560354 | None:intergenic |
| GCTGAGAAAACTTGAGATAA+GGG | 0.404897 | 4.1:-5560305 | MS.gene069556:CDS |
| GCCCCTCAGTTATGTGAGCT+TGG | 0.420842 | 4.1:-5561165 | MS.gene069556:CDS |
| AGAAGGAAGCGATGATAGTC+AGG | 0.422000 | 4.1:-5560131 | MS.gene069556:CDS |
| ATGGAGGGGCATCCCTTCTT+GGG | 0.423321 | 4.1:+5560074 | None:intergenic |
| CAAATCTTTGAAGACTTTGA+AGG | 0.423965 | 4.1:-5561235 | MS.gene069556:CDS |
| AGCCTCAACTCCTCAAGAAA+AGG | 0.428352 | 4.1:+5562395 | None:intergenic |
| CCTGCAGATCCCTTTGACGA+GGG | 0.435295 | 4.1:-5560712 | MS.gene069556:CDS |
| TTTCAGAGAGTGAGAACAAA+TGG | 0.440221 | 4.1:+5560055 | None:intergenic |
| ACCCAAAGGCGTCGAAGATT+AGG | 0.441455 | 4.1:+5560913 | None:intergenic |
| CCCTCGTCAAAGGGATCTGC+AGG | 0.454715 | 4.1:+5560712 | None:intergenic |
| GGGGTGCTGATATTCATTCA+TGG | 0.461105 | 4.1:-5562442 | MS.gene069556:CDS |
| CATCCATAGGTTCATTCGTC+AGG | 0.461410 | 4.1:+5560509 | None:intergenic |
| TTTGACGAGGGCGTTGTGCA+CGG | 0.463162 | 4.1:-5560700 | MS.gene069556:CDS |
| AACCTGATACAGAAAGCCTT+TGG | 0.463742 | 4.1:+5560449 | None:intergenic |
| CTTTCTCTGCTGAGCTGTGA+AGG | 0.465139 | 4.1:-5562305 | MS.gene069556:CDS |
| AGCTGAGAAAACTTGAGATA+AGG | 0.465986 | 4.1:-5560306 | MS.gene069556:CDS |
| GTGCACAACGCCCTCGTCAA+AGG | 0.468017 | 4.1:+5560702 | None:intergenic |
| TACATCCATTCATTGTTACT+TGG | 0.471398 | 4.1:+5560203 | None:intergenic |
| AATCTACTTGTCAAGATCTC+AGG | 0.472486 | 4.1:+5562536 | None:intergenic |
| TGCACAACGCCCTCGTCAAA+GGG | 0.472717 | 4.1:+5560703 | None:intergenic |
| TGCTGATATTCATTCATGGT+TGG | 0.476550 | 4.1:-5562438 | MS.gene069556:CDS |
| TTTGCCGGAAGCAGTGACTT+GGG | 0.476674 | 4.1:-5560358 | MS.gene069556:CDS |
| AGGGGCATCCCTTCTTGGGC+CGG | 0.481810 | 4.1:+5560078 | None:intergenic |
| AGGATTTAGCACTGATGGCT+TGG | 0.482352 | 4.1:-5562285 | MS.gene069556:CDS |
| GACTGCCAAGTAACAATGAA+TGG | 0.488206 | 4.1:-5560208 | MS.gene069556:CDS |
| AAGCCTTTGGAGTTTAGTGC+AGG | 0.488319 | 4.1:+5560462 | None:intergenic |
| AGAGGACGTAGTGAAGCTTC+CGG | 0.490890 | 4.1:+5560638 | None:intergenic |
| GGAGTTGAGGCTCAAGAGAA+TGG | 0.491782 | 4.1:-5562384 | MS.gene069556:CDS |
| GTTGAAGTAATTAAGGAAGA+AGG | 0.492228 | 4.1:-5560148 | MS.gene069556:CDS |
| CAGTTATGTGAGCTTGGCAG+TGG | 0.493794 | 4.1:-5561159 | MS.gene069556:CDS |
| ATAAGAAGTGTTACACTCAA+AGG | 0.496754 | 4.1:-5562506 | MS.gene069556:CDS |
| CACCCTTTCTGGTTTATGGG+TGG | 0.500938 | 4.1:-5561061 | MS.gene069556:CDS |
| GAGATAAGGGACTGTCCATT+CGG | 0.505837 | 4.1:-5560292 | MS.gene069556:CDS |
| GATGCGCTTGAGAAACTTGT+CGG | 0.507130 | 4.1:-5561264 | MS.gene069556:CDS |
| TAAGAAGTGTTACACTCAAA+GGG | 0.508033 | 4.1:-5562505 | MS.gene069556:CDS |
| TCGATGACAAAAGCGGTGAT+TGG | 0.508436 | 4.1:-5561362 | MS.gene069556:CDS |
| CAGAGTATAGAACTTGAAGT+TGG | 0.510227 | 4.1:+5561016 | None:intergenic |
| AGCCGGAAATGAGTGAAGTC+AGG | 0.523333 | 4.1:+5560562 | None:intergenic |
| GTTCTGTTGCCGGCCCAAGA+AGG | 0.525623 | 4.1:-5560087 | MS.gene069556:CDS |
| ATTCTCTTGTATGTCAAGCT+CGG | 0.532804 | 4.1:+5561389 | None:intergenic |
| TGTGAAGGATTTAGCACTGA+TGG | 0.534547 | 4.1:-5562290 | MS.gene069556:CDS |
| TTCTGTTGCCGGCCCAAGAA+GGG | 0.535830 | 4.1:-5560086 | MS.gene069556:CDS |
| GCTCCAAAGGCCTCATCCAT+AGG | 0.536354 | 4.1:+5560496 | None:intergenic |
| GCCTCAACTCCTCAAGAAAA+GGG | 0.537412 | 4.1:+5562396 | None:intergenic |
| TTGCTGTCTCTGAAGGATGC+CGG | 0.538728 | 4.1:-5560657 | MS.gene069556:CDS |
| AGCCACCCATAAACCAGAAA+GGG | 0.542673 | 4.1:+5561059 | None:intergenic |
| TAGGGGTCATGATGCACAGC+CGG | 0.545042 | 4.1:+5560545 | None:intergenic |
| GGTCTTAACAACTGCTCCAA+AGG | 0.546055 | 4.1:+5560483 | None:intergenic |
| CAGCATCATTTGTCATCTGA+TGG | 0.546732 | 4.1:+5560608 | None:intergenic |
| TTACCTGACGAATGAACCTA+TGG | 0.549205 | 4.1:-5560512 | MS.gene069556:CDS |
| TCCTGCAGATCCCTTTGACG+AGG | 0.558084 | 4.1:-5560713 | MS.gene069556:CDS |
| CACAGTTGAAGACAAGGGAC+TGG | 0.558137 | 4.1:-5560782 | MS.gene069556:CDS |
| ACACGTAGCTCCTCGAGCAA+TGG | 0.562903 | 4.1:+5560739 | None:intergenic |
| GACAAGGGACTGGAAGCTGT+TGG | 0.564143 | 4.1:-5560772 | MS.gene069556:CDS |
| ACGTTTCTCTGACTTCAACT+TGG | 0.564927 | 4.1:-5562477 | MS.gene069556:CDS |
| TGACGAGGGCGTTGTGCACG+GGG | 0.568532 | 4.1:-5560698 | MS.gene069556:CDS |
| AAACTTGGAAACGCTTTCAG+TGG | 0.570395 | 4.1:-5560383 | MS.gene069556:CDS |
| AATGAGATCACTTTGGATGT+CGG | 0.572083 | 4.1:-5560230 | MS.gene069556:CDS |
| AAGCCACCCATAAACCAGAA+AGG | 0.576681 | 4.1:+5561058 | None:intergenic |
| TTGCCGGAAGCAGTGACTTG+GGG | 0.577064 | 4.1:-5560357 | MS.gene069556:CDS |
| ATGCGTCAATGAGATCACTT+TGG | 0.577401 | 4.1:-5560237 | MS.gene069556:CDS |
| GACGAATGAACCTATGGATG+AGG | 0.578886 | 4.1:-5560506 | MS.gene069556:CDS |
| ATTACTTCAACATTCAACCT+CGG | 0.585805 | 4.1:+5560160 | None:intergenic |
| TCATCTGATGGCAAAAGTAG+AGG | 0.589318 | 4.1:+5560620 | None:intergenic |
| TTTCTTTAGTTTGCAAACAG+TGG | 0.597043 | 4.1:-5562619 | MS.gene069556:CDS |
| AAAAGTGCTGCATCGCCGAA+TGG | 0.606996 | 4.1:+5560277 | None:intergenic |
| CAGAGAGTGAGAACAAATGG+AGG | 0.612840 | 4.1:+5560058 | None:intergenic |
| TGCCAAGCTCACATAACTGA+GGG | 0.617421 | 4.1:+5561163 | None:intergenic |
| CGCTTGAGAAACTTGTCGGT+AGG | 0.619571 | 4.1:-5561260 | MS.gene069556:CDS |
| AACTTGGTTCCTGAAAATTG+GGG | 0.622806 | 4.1:-5562461 | MS.gene069556:CDS |
| AGAGAGTGAGAACAAATGGA+GGG | 0.623048 | 4.1:+5560059 | None:intergenic |
| ATCATATTGTCCATTGCTCG+AGG | 0.624054 | 4.1:-5560749 | MS.gene069556:CDS |
| TCCCTATAAACTCAAATGCG+AGG | 0.639490 | 4.1:+5560416 | None:intergenic |
| TGTTAGCAAAAGAAAAGCCG+AGG | 0.639572 | 4.1:-5560177 | MS.gene069556:CDS |
| TGTAGACACAGTTGAAGACA+AGG | 0.644710 | 4.1:-5560788 | MS.gene069556:CDS |
| AGACCTGCACTAAACTCCAA+AGG | 0.647440 | 4.1:-5560465 | MS.gene069556:CDS |
| AATGACATCGATGACAAAAG+CGG | 0.649581 | 4.1:-5561369 | MS.gene069556:CDS |
| CAGGTAATCTGGCTGATTAG+GGG | 0.650421 | 4.1:+5560528 | None:intergenic |
| CTGCCAAGCTCACATAACTG+AGG | 0.656866 | 4.1:+5561162 | None:intergenic |
| ACAACGCTGAAAGATTGTCA+AGG | 0.689288 | 4.1:-5562595 | MS.gene069556:CDS |
| GAGAGTGAGAACAAATGGAG+GGG | 0.695193 | 4.1:+5560060 | None:intergenic |
| ACGCTGAAAGATTGTCAAGG+AGG | 0.697851 | 4.1:-5562592 | MS.gene069556:CDS |
| GCCAAGCTCACATAACTGAG+GGG | 0.733620 | 4.1:+5561164 | None:intergenic |
| GTAGACACAGTTGAAGACAA+GGG | 0.743765 | 4.1:-5560787 | MS.gene069556:CDS |
| AAGTTGAAGTCAGAGAAACG+TGG | 0.761191 | 4.1:+5562479 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTAAATGTGATTTAAT+AGG | - | chr4.1:5561086-5561105 | MS.gene069556:CDS | 10.0% |
| !! | TAATTAAATGTGATTTAATA+GGG | - | chr4.1:5561087-5561106 | MS.gene069556:CDS | 10.0% |
| !! | ATGTAAATAATTTATGTCAA+CGG | + | chr4.1:5560904-5560923 | None:intergenic | 15.0% |
| !! | CAATAAATACTGATATATTT+AGG | + | chr4.1:5560639-5560658 | None:intergenic | 15.0% |
| !! | TAAATCAATCTATGAATTAA+TGG | + | chr4.1:5560828-5560847 | None:intergenic | 15.0% |
| !!! | AATTCATAGATTGATTTATT+AGG | - | chr4.1:5560830-5560849 | MS.gene069556:intron | 15.0% |
| !!! | CTTTTTAAGATTCTTAATTA+AGG | - | chr4.1:5560962-5560981 | MS.gene069556:CDS | 15.0% |
| !!! | TTTTTTTTAGATTTAGCATA+GGG | - | chr4.1:5561121-5561140 | MS.gene069556:CDS | 15.0% |
| !!! | TTTTTTTTTAGATTTAGCAT+AGG | - | chr4.1:5561120-5561139 | MS.gene069556:CDS | 15.0% |
| !! | CATTTAATTATGTAACAATG+AGG | + | chr4.1:5561077-5561096 | None:intergenic | 20.0% |
| !! | GCATATATGATTATTAACTT+TGG | - | chr4.1:5561159-5561178 | MS.gene069556:CDS | 20.0% |
| !! | TATCAATCAATTATAATAGC+CGG | + | chr4.1:5561006-5561025 | None:intergenic | 20.0% |
| !! | TTGAAAATTTGGTATTTCTT+GGG | - | chr4.1:5561305-5561324 | MS.gene069556:CDS | 20.0% |
| !! | TTTGAAAATTTGGTATTTCT+TGG | - | chr4.1:5561304-5561323 | MS.gene069556:CDS | 20.0% |
| !!! | AAAGAATGATGAAAATGTTT+TGG | - | chr4.1:5561927-5561946 | MS.gene069556:intron | 20.0% |
| ! | ATAAAGAAAATCATACCCAA+AGG | + | chr4.1:5561862-5561881 | None:intergenic | 25.0% |
| ! | ATCAATCAATTATAATAGCC+GGG | + | chr4.1:5561005-5561024 | None:intergenic | 25.0% |
| ! | ATCATATATGCAGTACTTAA+AGG | + | chr4.1:5561150-5561169 | None:intergenic | 25.0% |
| ! | ATTAGGATTCACTAAAATAC+AGG | - | chr4.1:5560847-5560866 | MS.gene069556:intron | 25.0% |
| ! | CATATCGAGATTTGAAAATT+TGG | - | chr4.1:5561294-5561313 | MS.gene069556:CDS | 25.0% |
| ! | CGATATTTACATCATTGTTT+AGG | + | chr4.1:5561475-5561494 | None:intergenic | 25.0% |
| ! | GTTGAATGTTGAAGTAATTA+AGG | - | chr4.1:5562603-5562622 | MS.gene069556:CDS | 25.0% |
| ! | TAAATCTTACTTGCAATTAG+TGG | + | chr4.1:5560508-5560527 | None:intergenic | 25.0% |
| ! | TGAATCCATAAAAATACTTG+TGG | - | chr4.1:5561040-5561059 | MS.gene069556:CDS | 25.0% |
| !!! | AAGTTCCACAAGTATTTTTA+TGG | + | chr4.1:5561048-5561067 | None:intergenic | 25.0% |
| !!! | CTAAGATTTGTTGTATTGTA+TGG | - | chr4.1:5560743-5560762 | MS.gene069556:CDS | 25.0% |
| AGTGTAACACTTCTTATGTT+TGG | + | chr4.1:5560249-5560268 | None:intergenic | 30.0% | |
| AGTTGTGTGTGAATTTCAAT+TGG | + | chr4.1:5560578-5560597 | None:intergenic | 30.0% | |
| ATTACTTCAACATTCAACCT+CGG | + | chr4.1:5562601-5562620 | None:intergenic | 30.0% | |
| GTTGAAGTAATTAAGGAAGA+AGG | - | chr4.1:5562610-5562629 | MS.gene069556:CDS | 30.0% | |
| TACATCCATTCATTGTTACT+TGG | + | chr4.1:5562558-5562577 | None:intergenic | 30.0% | |
| TCTGAATATTACATTGATGC+AGG | - | chr4.1:5561339-5561358 | MS.gene069556:CDS | 30.0% | |
| TTGGAACATCTACATTATAC+AGG | - | chr4.1:5561946-5561965 | MS.gene069556:intron | 30.0% | |
| ! | CAAATCTTTGAAGACTTTGA+AGG | - | chr4.1:5561523-5561542 | MS.gene069556:intron | 30.0% |
| ! | GCTTTTTGCACATATACAAT+TGG | + | chr4.1:5560943-5560962 | None:intergenic | 30.0% |
| !! | ATAAGAAGTGTTACACTCAA+AGG | - | chr4.1:5560252-5560271 | MS.gene069556:CDS | 30.0% |
| !! | TAAGAAGTGTTACACTCAAA+GGG | - | chr4.1:5560253-5560272 | MS.gene069556:CDS | 30.0% |
| !! | TGATGAGAGTTTAGAGTTTT+TGG | - | chr4.1:5560404-5560423 | MS.gene069556:CDS | 30.0% |
| !! | TTTCTTTAGTTTGCAAACAG+TGG | - | chr4.1:5560139-5560158 | MS.gene069556:CDS | 30.0% |
| !!! | TTGCGTTGTTTTTCTTTTAC+TGG | - | chr4.1:5560775-5560794 | MS.gene069556:CDS | 30.0% |
| AAAGAAAAACAACGCAAACC+AGG | + | chr4.1:5560772-5560791 | None:intergenic | 35.0% | |
| AACTTGGTTCCTGAAAATTG+GGG | - | chr4.1:5560297-5560316 | MS.gene069556:CDS | 35.0% | |
| AATCTACTTGTCAAGATCTC+AGG | + | chr4.1:5560225-5560244 | None:intergenic | 35.0% | |
| AATGACATCGATGACAAAAG+CGG | - | chr4.1:5561389-5561408 | MS.gene069556:CDS | 35.0% | |
| AATGAGATCACTTTGGATGT+CGG | - | chr4.1:5562528-5562547 | MS.gene069556:CDS | 35.0% | |
| AGCTGAGAAAACTTGAGATA+AGG | - | chr4.1:5562452-5562471 | MS.gene069556:CDS | 35.0% | |
| ATGGATTCAACAAACATGCA+TGG | + | chr4.1:5561029-5561048 | None:intergenic | 35.0% | |
| ATTCTCTTGTATGTCAAGCT+CGG | + | chr4.1:5561372-5561391 | None:intergenic | 35.0% | |
| CAACTTGGTTCCTGAAAATT+GGG | - | chr4.1:5560296-5560315 | MS.gene069556:CDS | 35.0% | |
| CAGAGTATAGAACTTGAAGT+TGG | + | chr4.1:5561745-5561764 | None:intergenic | 35.0% | |
| CCAATGATGTAAAGCTTTCT+GGG | + | chr4.1:5561433-5561452 | None:intergenic | 35.0% | |
| GCTGAGAAAACTTGAGATAA+GGG | - | chr4.1:5562453-5562472 | MS.gene069556:CDS | 35.0% | |
| TAGGACAAGGATTCTCTAAT+TGG | + | chr4.1:5560708-5560727 | None:intergenic | 35.0% | |
| TATGTTTATCGTTCTGTTGC+CGG | - | chr4.1:5562661-5562680 | MS.gene069556:CDS | 35.0% | |
| TCAACTTGGTTCCTGAAAAT+TGG | - | chr4.1:5560295-5560314 | MS.gene069556:CDS | 35.0% | |
| TCCAATGATGTAAAGCTTTC+TGG | + | chr4.1:5561434-5561453 | None:intergenic | 35.0% | |
| TGCTGATATTCATTCATGGT+TGG | - | chr4.1:5560320-5560339 | MS.gene069556:CDS | 35.0% | |
| ! | ACCTCGCATTTGAGTTTATA+GGG | - | chr4.1:5562341-5562360 | MS.gene069556:CDS | 35.0% |
| ! | ATCTCAAGTTTTCTCAGCTT+CGG | + | chr4.1:5562451-5562470 | None:intergenic | 35.0% |
| ! | GACAAGCATTTTTAATGACC+CGG | - | chr4.1:5560984-5561003 | MS.gene069556:CDS | 35.0% |
| ! | TCAAGGAGGAATGTTTTCAT+AGG | - | chr4.1:5560180-5560199 | MS.gene069556:CDS | 35.0% |
| !! | GAAGTGTTGAAACAAGTTCT+TGG | - | chr4.1:5560084-5560103 | MS.gene069556:CDS | 35.0% |
| !!! | TGAAAAGTACCCTTTTCTTG+AGG | - | chr4.1:5560353-5560372 | MS.gene069556:CDS | 35.0% |
| !!! | TGAAAGCGTTTCCAAGTTTT+TGG | + | chr4.1:5562374-5562393 | None:intergenic | 35.0% |
| AAACTTGGAAACGCTTTCAG+TGG | - | chr4.1:5562375-5562394 | MS.gene069556:CDS | 40.0% | |
| AACCTGATACAGAAAGCCTT+TGG | + | chr4.1:5562312-5562331 | None:intergenic | 40.0% | |
| AAGTTGAAGTCAGAGAAACG+TGG | + | chr4.1:5560282-5560301 | None:intergenic | 40.0% | |
| AATCCTTGTCCTATGAGGAT+AGG | - | chr4.1:5560715-5560734 | MS.gene069556:CDS | 40.0% | |
| ACAACGCTGAAAGATTGTCA+AGG | - | chr4.1:5560163-5560182 | MS.gene069556:CDS | 40.0% | |
| ACGTTTCTCTGACTTCAACT+TGG | - | chr4.1:5560281-5560300 | MS.gene069556:CDS | 40.0% | |
| AGAGAGTGAGAACAAATGGA+GGG | + | chr4.1:5562702-5562721 | None:intergenic | 40.0% | |
| ATCACACTGCTTATGCTTTC+AGG | + | chr4.1:5561201-5561220 | None:intergenic | 40.0% | |
| ATCATATTGTCCATTGCTCG+AGG | - | chr4.1:5562009-5562028 | MS.gene069556:intron | 40.0% | |
| ATGCGTCAATGAGATCACTT+TGG | - | chr4.1:5562521-5562540 | MS.gene069556:CDS | 40.0% | |
| CAGCATCATTTGTCATCTGA+TGG | + | chr4.1:5562153-5562172 | None:intergenic | 40.0% | |
| CCCAGAAAGCTTTACATCAT+TGG | - | chr4.1:5561430-5561449 | MS.gene069556:intron | 40.0% | |
| GACTGCCAAGTAACAATGAA+TGG | - | chr4.1:5562550-5562569 | MS.gene069556:CDS | 40.0% | |
| GTAGACACAGTTGAAGACAA+GGG | - | chr4.1:5561971-5561990 | MS.gene069556:intron | 40.0% | |
| TAGAGAATCCTTGTCCTATG+AGG | - | chr4.1:5560710-5560729 | MS.gene069556:CDS | 40.0% | |
| TCACACTGCTTATGCTTTCA+GGG | + | chr4.1:5561200-5561219 | None:intergenic | 40.0% | |
| TCAGGTAATCTGGCTGATTA+GGG | + | chr4.1:5562234-5562253 | None:intergenic | 40.0% | |
| TCATCTGATGGCAAAAGTAG+AGG | + | chr4.1:5562141-5562160 | None:intergenic | 40.0% | |
| TCCCTATAAACTCAAATGCG+AGG | + | chr4.1:5562345-5562364 | None:intergenic | 40.0% | |
| TGTAGACACAGTTGAAGACA+AGG | - | chr4.1:5561970-5561989 | MS.gene069556:intron | 40.0% | |
| TGTTAGCAAAAGAAAAGCCG+AGG | - | chr4.1:5562581-5562600 | MS.gene069556:CDS | 40.0% | |
| TTACCTGACGAATGAACCTA+TGG | - | chr4.1:5562246-5562265 | MS.gene069556:intron | 40.0% | |
| ! | AGGGAAGTATGCCAAAAACT+TGG | - | chr4.1:5562360-5562379 | MS.gene069556:CDS | 40.0% |
| ! | ATATCAGCACCCCAATTTTC+AGG | + | chr4.1:5560309-5560328 | None:intergenic | 40.0% |
| ! | GACCTCGCATTTGAGTTTAT+AGG | - | chr4.1:5562340-5562359 | MS.gene069556:CDS | 40.0% |
| ! | TAGACCTTCCGGACATTTTT+CGG | - | chr4.1:5560676-5560695 | MS.gene069556:CDS | 40.0% |
| ! | TGTGAAGGATTTAGCACTGA+TGG | - | chr4.1:5560468-5560487 | MS.gene069556:CDS | 40.0% |
| !! | AAGAGTATTCACACCCTTTC+TGG | - | chr4.1:5561686-5561705 | MS.gene069556:intron | 40.0% |
| !! | TCACACCCTTTCTGGTTTAT+GGG | - | chr4.1:5561694-5561713 | MS.gene069556:intron | 40.0% |
| !! | TTCACACCCTTTCTGGTTTA+TGG | - | chr4.1:5561693-5561712 | MS.gene069556:intron | 40.0% |
| !!! | GGTTTTATTGCTGTCTCTGA+AGG | - | chr4.1:5562094-5562113 | MS.gene069556:intron | 40.0% |
| AAGCCACCCATAAACCAGAA+AGG | + | chr4.1:5561703-5561722 | None:intergenic | 45.0% | |
| AAGCCTATCCTCATAGGACA+AGG | + | chr4.1:5560721-5560740 | None:intergenic | 45.0% | |
| ACGCTGAAAGATTGTCAAGG+AGG | - | chr4.1:5560166-5560185 | MS.gene069556:CDS | 45.0% | |
| AGAAGGAAGCGATGATAGTC+AGG | - | chr4.1:5562627-5562646 | MS.gene069556:CDS | 45.0% | |
| AGACCTGCACTAAACTCCAA+AGG | - | chr4.1:5562293-5562312 | MS.gene069556:CDS | 45.0% | |
| AGCCACCCATAAACCAGAAA+GGG | + | chr4.1:5561702-5561721 | None:intergenic | 45.0% | |
| AGCCTCAACTCCTCAAGAAA+AGG | + | chr4.1:5560366-5560385 | None:intergenic | 45.0% | |
| CAAGATCCTGGATTCGAATC+TGG | - | chr4.1:5560599-5560618 | MS.gene069556:CDS | 45.0% | |
| CAGAGAGTGAGAACAAATGG+AGG | + | chr4.1:5562703-5562722 | None:intergenic | 45.0% | |
| CAGGTAATCTGGCTGATTAG+GGG | + | chr4.1:5562233-5562252 | None:intergenic | 45.0% | |
| CATCCATAGGTTCATTCGTC+AGG | + | chr4.1:5562252-5562271 | None:intergenic | 45.0% | |
| CTCCAAAGGCTTTCTGTATC+AGG | - | chr4.1:5562307-5562326 | MS.gene069556:CDS | 45.0% | |
| CTTCATCCAGATTCGAATCC+AGG | + | chr4.1:5560608-5560627 | None:intergenic | 45.0% | |
| GACGAATGAACCTATGGATG+AGG | - | chr4.1:5562252-5562271 | MS.gene069556:intron | 45.0% | |
| GAGAGTGAGAACAAATGGAG+GGG | + | chr4.1:5562701-5562720 | None:intergenic | 45.0% | |
| GAGATAAGGGACTGTCCATT+CGG | - | chr4.1:5562466-5562485 | MS.gene069556:CDS | 45.0% | |
| GATGCGCTTGAGAAACTTGT+CGG | - | chr4.1:5561494-5561513 | MS.gene069556:intron | 45.0% | |
| GCCTCAACTCCTCAAGAAAA+GGG | + | chr4.1:5560365-5560384 | None:intergenic | 45.0% | |
| GGTCTCTACCGAAAAATGTC+CGG | + | chr4.1:5560687-5560706 | None:intergenic | 45.0% | |
| GGTCTTAACAACTGCTCCAA+AGG | + | chr4.1:5562278-5562297 | None:intergenic | 45.0% | |
| GGTTCATTCGTCAGGTAATC+TGG | + | chr4.1:5562244-5562263 | None:intergenic | 45.0% | |
| GTCAGGTAATCTGGCTGATT+AGG | + | chr4.1:5562235-5562254 | None:intergenic | 45.0% | |
| GTCCTGACTTCACTCATTTC+CGG | - | chr4.1:5562194-5562213 | MS.gene069556:intron | 45.0% | |
| TCCTAATCTTCGACGCCTTT+GGG | - | chr4.1:5561844-5561863 | MS.gene069556:intron | 45.0% | |
| TCGATGACAAAAGCGGTGAT+TGG | - | chr4.1:5561396-5561415 | MS.gene069556:CDS | 45.0% | |
| TCTACCGAAAAATGTCCGGA+AGG | + | chr4.1:5560683-5560702 | None:intergenic | 45.0% | |
| TGCCAAGCTCACATAACTGA+GGG | + | chr4.1:5561598-5561617 | None:intergenic | 45.0% | |
| TGTTGTATTGTATGGCTGCC+TGG | - | chr4.1:5560751-5560770 | MS.gene069556:CDS | 45.0% | |
| TTAGCCAAGCCTATCCTCAT+AGG | + | chr4.1:5560727-5560746 | None:intergenic | 45.0% | |
| TTGTCCTATGAGGATAGGCT+TGG | - | chr4.1:5560720-5560739 | MS.gene069556:CDS | 45.0% | |
| ! | ACCCTTTTCTTGAGGAGTTG+AGG | - | chr4.1:5560361-5560380 | MS.gene069556:CDS | 45.0% |
| ! | TGCAGCACTTTTGTCTGGTT+TGG | - | chr4.1:5562492-5562511 | MS.gene069556:CDS | 45.0% |
| !! | AAGCCTTTGGAGTTTAGTGC+AGG | + | chr4.1:5562299-5562318 | None:intergenic | 45.0% |
| !! | AGGATTTAGCACTGATGGCT+TGG | - | chr4.1:5560473-5560492 | MS.gene069556:CDS | 45.0% |
| !! | GGGGTGCTGATATTCATTCA+TGG | - | chr4.1:5560316-5560335 | MS.gene069556:CDS | 45.0% |
| AGAGGACGTAGTGAAGCTTC+CGG | + | chr4.1:5562123-5562142 | None:intergenic | 50.0% | |
| AGCCGGAAATGAGTGAAGTC+AGG | + | chr4.1:5562199-5562218 | None:intergenic | 50.0% | |
| CACACACAACTGCAAGATCC+TGG | - | chr4.1:5560587-5560606 | MS.gene069556:CDS | 50.0% | |
| CACAGTTGAAGACAAGGGAC+TGG | - | chr4.1:5561976-5561995 | MS.gene069556:intron | 50.0% | |
| CAGTTATGTGAGCTTGGCAG+TGG | - | chr4.1:5561599-5561618 | MS.gene069556:intron | 50.0% | |
| CGCTTGAGAAACTTGTCGGT+AGG | - | chr4.1:5561498-5561517 | MS.gene069556:intron | 50.0% | |
| CTGCCAAGCTCACATAACTG+AGG | + | chr4.1:5561599-5561618 | None:intergenic | 50.0% | |
| CTTTCTCTGCTGAGCTGTGA+AGG | - | chr4.1:5560453-5560472 | MS.gene069556:CDS | 50.0% | |
| GAACCTATGGATGAGGCCTT+TGG | - | chr4.1:5562259-5562278 | MS.gene069556:intron | 50.0% | |
| GCCAAGCTCACATAACTGAG+GGG | + | chr4.1:5561597-5561616 | None:intergenic | 50.0% | |
| GGAGTTGAGGCTCAAGAGAA+TGG | - | chr4.1:5560374-5560393 | MS.gene069556:CDS | 50.0% | |
| GTCCTAATCTTCGACGCCTT+TGG | - | chr4.1:5561843-5561862 | MS.gene069556:intron | 50.0% | |
| GTGATAGACGCTAGACCTTC+CGG | - | chr4.1:5560665-5560684 | MS.gene069556:CDS | 50.0% | |
| TTTGCCGGAAGCAGTGACTT+GGG | - | chr4.1:5562400-5562419 | MS.gene069556:CDS | 50.0% | |
| ! | ACGCTTTCAGTGGCTTTTGC+CGG | - | chr4.1:5562385-5562404 | MS.gene069556:CDS | 50.0% |
| ! | TTGCTGTCTCTGAAGGATGC+CGG | - | chr4.1:5562101-5562120 | MS.gene069556:intron | 50.0% |
| ! | TTTTGCCGGAAGCAGTGACT+TGG | - | chr4.1:5562399-5562418 | MS.gene069556:CDS | 50.0% |
| !! | AAAAGTGCTGCATCGCCGAA+TGG | + | chr4.1:5562484-5562503 | None:intergenic | 50.0% |
| !! | ACCCAAAGGCGTCGAAGATT+AGG | + | chr4.1:5561848-5561867 | None:intergenic | 50.0% |
| !! | CACCCTTTCTGGTTTATGGG+TGG | - | chr4.1:5561697-5561716 | MS.gene069556:intron | 50.0% |
| ACACGTAGCTCCTCGAGCAA+TGG | + | chr4.1:5562022-5562041 | None:intergenic | 55.0% | |
| CATCCCCAAGTCACTGCTTC+CGG | + | chr4.1:5562407-5562426 | None:intergenic | 55.0% | |
| CCTGCAGATCCCTTTGACGA+GGG | - | chr4.1:5562046-5562065 | MS.gene069556:intron | 55.0% | |
| GACAAGGGACTGGAAGCTGT+TGG | - | chr4.1:5561986-5562005 | MS.gene069556:intron | 55.0% | |
| GCCCCTCAGTTATGTGAGCT+TGG | - | chr4.1:5561593-5561612 | MS.gene069556:intron | 55.0% | |
| GCTCCAAAGGCCTCATCCAT+AGG | + | chr4.1:5562265-5562284 | None:intergenic | 55.0% | |
| GGGATGCAGTCTGTACTTGC+TGG | - | chr4.1:5562421-5562440 | MS.gene069556:CDS | 55.0% | |
| GTGCACGGGGTTACTGAATC+AGG | - | chr4.1:5562073-5562092 | MS.gene069556:intron | 55.0% | |
| TAGGGGTCATGATGCACAGC+CGG | + | chr4.1:5562216-5562235 | None:intergenic | 55.0% | |
| TCCTGCAGATCCCTTTGACG+AGG | - | chr4.1:5562045-5562064 | MS.gene069556:intron | 55.0% | |
| TGCACAACGCCCTCGTCAAA+GGG | + | chr4.1:5562058-5562077 | None:intergenic | 55.0% | |
| TTCTGTTGCCGGCCCAAGAA+GGG | - | chr4.1:5562672-5562691 | MS.gene069556:CDS | 55.0% | |
| TTGCCGGAAGCAGTGACTTG+GGG | - | chr4.1:5562401-5562420 | MS.gene069556:CDS | 55.0% | |
| ! | GGCGATGCAGCACTTTTGTC+TGG | - | chr4.1:5562487-5562506 | MS.gene069556:CDS | 55.0% |
| !! | AATGGAGGGGCATCCCTTCT+TGG | + | chr4.1:5562688-5562707 | None:intergenic | 55.0% |
| !! | ATGGAGGGGCATCCCTTCTT+GGG | + | chr4.1:5562687-5562706 | None:intergenic | 55.0% |
| !! | TTTGACGAGGGCGTTGTGCA+CGG | - | chr4.1:5562058-5562077 | MS.gene069556:intron | 55.0% |
| CCCTCGTCAAAGGGATCTGC+AGG | + | chr4.1:5562049-5562068 | None:intergenic | 60.0% | |
| GTGCACAACGCCCTCGTCAA+AGG | + | chr4.1:5562059-5562078 | None:intergenic | 60.0% | |
| GTTCTGTTGCCGGCCCAAGA+AGG | - | chr4.1:5562671-5562690 | MS.gene069556:CDS | 60.0% | |
| !! | TTGACGAGGGCGTTGTGCAC+GGG | - | chr4.1:5562059-5562078 | MS.gene069556:intron | 60.0% |
| !! | AGGGGCATCCCTTCTTGGGC+CGG | + | chr4.1:5562683-5562702 | None:intergenic | 65.0% |
| !! | TGACGAGGGCGTTGTGCACG+GGG | - | chr4.1:5562060-5562079 | MS.gene069556:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 5560057 | 5562723 | 5560057 | ID=MS.gene069556 |
| chr4.1 | mRNA | 5560057 | 5562723 | 5560057 | ID=MS.gene069556.t1;Parent=MS.gene069556 |
| chr4.1 | exon | 5562263 | 5562723 | 5562263 | ID=MS.gene069556.t1.exon1;Parent=MS.gene069556.t1 |
| chr4.1 | CDS | 5562263 | 5562723 | 5562263 | ID=cds.MS.gene069556.t1;Parent=MS.gene069556.t1 |
| chr4.1 | exon | 5560915 | 5561419 | 5560915 | ID=MS.gene069556.t1.exon2;Parent=MS.gene069556.t1 |
| chr4.1 | CDS | 5560915 | 5561419 | 5560915 | ID=cds.MS.gene069556.t1;Parent=MS.gene069556.t1 |
| chr4.1 | exon | 5560057 | 5560812 | 5560057 | ID=MS.gene069556.t1.exon3;Parent=MS.gene069556.t1 |
| chr4.1 | CDS | 5560057 | 5560812 | 5560057 | ID=cds.MS.gene069556.t1;Parent=MS.gene069556.t1 |
| Gene Sequence |
| Protein sequence |
