AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055764


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055764.t1 MTR_2g090875 100.000 196 0 0 1 196 1 196 1.66e-147 407
MS.gene055764.t1 MTR_4g073250 84.772 197 29 1 1 196 1 197 2.31e-126 354
MS.gene055764.t1 MTR_4g088055 86.735 196 26 0 1 196 1 196 2.70e-121 341
MS.gene055764.t1 MTR_3g078260 79.082 196 40 1 2 196 4 199 1.46e-117 332
MS.gene055764.t1 MTR_8g075240 84.831 178 27 0 1 178 1 178 1.60e-116 329
MS.gene055764.t1 MTR_6g087980 77.387 199 41 1 1 195 1 199 1.77e-116 330
MS.gene055764.t1 MTR_5g022600 84.270 178 28 0 1 178 1 178 3.84e-115 326
MS.gene055764.t1 MTR_3g078260 86.555 119 16 0 2 120 4 122 7.40e-76 224
MS.gene055764.t1 MTR_7g103070 32.768 177 105 4 8 181 18 183 2.87e-28 105
MS.gene055764.t1 MTR_1g115325 33.533 167 98 5 6 170 15 170 1.04e-26 101
MS.gene055764.t1 MTR_1g068740 33.533 167 98 5 6 170 15 170 1.80e-26 100
MS.gene055764.t1 MTR_3g096350 31.414 191 112 6 7 190 13 191 1.81e-26 100
MS.gene055764.t1 MTR_1g068730 33.533 167 98 5 6 170 15 170 3.45e-26 100
MS.gene055764.t1 MTR_8g093740 31.844 179 107 5 6 181 13 179 4.44e-26 99.8
MS.gene055764.t1 MTR_7g100020 32.934 167 99 5 6 170 15 170 8.08e-26 99.4
MS.gene055764.t1 MTR_2g027660 31.977 172 103 5 1 170 1 160 5.05e-25 97.1
MS.gene055764.t1 MTR_6g021790 29.744 195 123 5 1 193 1 183 8.59e-25 96.7
MS.gene055764.t1 MTR_1g029450 31.285 179 108 5 6 181 17 183 1.36e-24 96.3
MS.gene055764.t1 MTR_1g094220 33.708 178 101 7 7 180 32 196 1.61e-24 95.5
MS.gene055764.t1 MTR_4g063160 33.136 169 98 6 6 170 15 172 5.18e-24 94.7
MS.gene055764.t1 MTR_1g062760 31.073 177 107 5 8 181 16 180 8.58e-24 94.0
MS.gene055764.t1 MTR_1g094220 33.721 172 97 7 7 174 32 190 1.29e-23 93.6
MS.gene055764.t1 MTR_1g094220 34.320 169 94 7 7 171 32 187 1.48e-23 93.2
MS.gene055764.t1 MTR_4g098950 35.758 165 92 5 8 170 11 163 1.60e-23 93.2
MS.gene055764.t1 MTR_1g094220 33.918 171 96 7 7 173 32 189 4.58e-23 92.8
MS.gene055764.t1 MTR_8g006970 29.534 193 111 6 6 196 8 177 1.27e-22 90.1
MS.gene055764.t1 MTR_8g006970 32.000 175 102 6 6 175 22 184 2.16e-22 90.5
MS.gene055764.t1 MTR_5g013900 35.758 165 92 5 8 170 11 163 3.79e-22 89.7
MS.gene055764.t1 MTR_8g031870 29.070 172 108 5 1 170 1 160 4.81e-22 89.0
MS.gene055764.t1 MTR_8g089985 35.758 165 92 5 8 170 19 171 6.24e-22 89.4
MS.gene055764.t1 MTR_2g083860 30.939 181 111 5 6 184 13 181 6.97e-22 89.0
MS.gene055764.t1 MTR_1g068730 34.109 129 82 3 6 132 15 142 7.16e-22 87.8
MS.gene055764.t1 MTR_2g096550 30.811 185 113 6 5 185 14 187 7.52e-22 89.0
MS.gene055764.t1 MTR_7g081700 30.769 169 103 5 6 172 8 164 1.15e-21 88.2
MS.gene055764.t1 MTR_3g087160 34.545 165 94 5 8 170 11 163 1.66e-21 87.8
MS.gene055764.t1 MTR_8g090215 34.545 165 94 5 8 170 11 163 2.30e-21 87.4
MS.gene055764.t1 MTR_1g068740 34.109 129 82 3 6 132 15 142 3.03e-21 87.0
MS.gene055764.t1 MTR_8g031660 28.488 172 109 5 1 170 1 160 4.03e-21 87.0
MS.gene055764.t1 MTR_3g086980 33.333 165 96 5 8 170 18 170 4.24e-21 87.0
MS.gene055764.t1 MTR_0262s0050 34.337 166 95 5 7 170 16 169 4.29e-21 87.0
MS.gene055764.t1 MTR_1g052475 34.940 166 94 5 7 170 16 169 5.39e-21 87.0
MS.gene055764.t1 MTR_2g102060 31.515 165 99 5 8 170 12 164 7.12e-21 85.9
MS.gene055764.t1 MTR_8g103550 31.515 165 99 5 8 170 11 163 7.51e-21 85.9
MS.gene055764.t1 MTR_3g069510 32.044 181 109 5 6 184 12 180 8.46e-21 86.3
MS.gene055764.t1 MTR_8g027220 33.939 165 95 5 8 170 28 180 2.32e-20 85.5
MS.gene055764.t1 MTR_2g005500 30.539 167 102 5 6 170 9 163 2.37e-20 84.7
MS.gene055764.t1 MTR_1g090717 29.744 195 116 7 7 191 16 199 2.78e-20 84.7
MS.gene055764.t1 MTR_8g031830 28.655 171 108 5 1 169 1 159 2.84e-20 84.3
MS.gene055764.t1 MTR_7g051940 31.492 181 110 5 6 184 13 181 3.65e-20 84.3
MS.gene055764.t1 MTR_4g064897 29.834 181 113 5 6 184 12 180 5.55e-20 84.0
MS.gene055764.t1 MTR_8g031680 27.326 172 111 5 1 170 1 160 5.94e-20 84.0
MS.gene055764.t1 MTR_2g005510 30.387 181 112 5 6 184 15 183 1.11e-19 83.2
MS.gene055764.t1 MTR_4g079350 36.567 134 82 3 6 137 13 145 1.63e-19 82.8
MS.gene055764.t1 MTR_7g117910 37.190 121 73 3 8 126 22 141 2.27e-19 82.4
MS.gene055764.t1 MTR_2g075950 31.737 167 100 5 6 170 13 167 2.52e-19 82.4
MS.gene055764.t1 MTR_4g088090 29.282 181 114 5 6 184 13 181 3.18e-19 82.0
MS.gene055764.t1 MTR_2g014990 30.387 181 112 5 6 184 13 181 4.00e-19 81.6
MS.gene055764.t1 MTR_1g097420 29.688 192 118 6 1 184 1 183 4.20e-19 81.6
MS.gene055764.t1 MTR_7g405790 29.282 181 114 5 6 184 15 183 4.79e-19 81.6
MS.gene055764.t1 MTR_8g093740 29.630 162 90 4 22 181 7 146 1.22e-18 79.7
MS.gene055764.t1 MTR_3g064390 30.303 165 101 4 8 170 12 164 1.40e-18 80.1
MS.gene055764.t1 MTR_1g078200 30.460 174 107 5 6 177 14 175 2.17e-18 80.1
MS.gene055764.t1 MTR_2g101890 29.032 186 117 5 6 185 10 186 3.32e-18 79.3
MS.gene055764.t1 MTR_7g103070 32.117 137 80 3 47 181 2 127 3.37e-18 77.8
MS.gene055764.t1 MTR_8g092020 29.379 177 110 4 6 176 12 179 4.99e-18 78.6
MS.gene055764.t1 MTR_5g076590 29.091 165 103 4 8 170 12 164 7.01e-18 78.2
MS.gene055764.t1 MTR_3g096350 33.898 118 74 3 7 121 13 129 1.03e-17 76.6
MS.gene055764.t1 MTR_4g069850 27.957 186 119 4 6 185 8 184 1.18e-17 77.8
MS.gene055764.t1 MTR_8g036220 31.138 167 101 5 6 170 16 170 1.21e-17 78.2
MS.gene055764.t1 MTR_3g096350 33.898 118 74 3 7 121 13 129 1.24e-17 76.3
MS.gene055764.t1 MTR_8g107070 29.282 181 114 5 6 184 14 182 2.86e-17 77.8
MS.gene055764.t1 MTR_4g012940 28.495 186 118 5 6 185 8 184 2.92e-17 76.6
MS.gene055764.t1 MTR_3g064390 33.607 122 78 3 8 127 12 132 4.02e-17 75.1
MS.gene055764.t1 MTR_2g090865 30.526 190 118 5 6 193 11 188 5.11e-17 76.3
MS.gene055764.t1 MTR_6g079550 33.871 124 79 3 6 127 12 134 4.97e-16 73.6
MS.gene055764.t1 MTR_1g097420 29.310 174 108 5 17 184 46 210 8.98e-16 73.2
MS.gene055764.t1 MTR_7g094810 27.273 187 102 3 7 180 9 174 3.72e-14 70.5
MS.gene055764.t1 MTR_7g094810 27.273 187 102 3 7 180 9 174 3.84e-14 70.5
MS.gene055764.t1 MTR_7g094810 27.273 187 102 3 7 180 9 174 3.92e-14 70.5
MS.gene055764.t1 MTR_7g094810 27.273 187 102 3 7 180 9 174 3.92e-14 70.5
MS.gene055764.t1 MTR_7g094810 27.273 187 102 3 7 180 9 174 3.94e-14 70.5
MS.gene055764.t1 MTR_4g099470 28.767 146 90 5 29 172 7 140 3.56e-13 65.1
MS.gene055764.t1 MTR_1g072280 28.409 176 114 5 7 180 13 178 6.29e-13 67.0
MS.gene055764.t1 MTR_1g082870 29.143 175 114 5 7 180 17 182 1.09e-11 63.2
MS.gene055764.t1 MTR_4g113620 28.926 121 76 4 7 127 14 124 4.41e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055764.t1 AT1G75840 85.204 196 29 0 1 196 1 196 2.79e-120 338
MS.gene055764.t1 AT4G35020 85.083 181 27 0 1 181 1 181 5.54e-120 338
MS.gene055764.t1 AT4G35020 85.083 181 27 0 1 181 1 181 5.54e-120 338
MS.gene055764.t1 AT4G35020 85.083 181 27 0 1 181 1 181 5.54e-120 338
MS.gene055764.t1 AT5G45970 81.095 201 33 1 1 196 1 201 1.55e-119 337
MS.gene055764.t1 AT1G20090 87.047 193 25 0 4 196 3 195 1.58e-119 337
MS.gene055764.t1 AT3G51300 85.955 178 25 0 1 178 1 178 1.02e-117 332
MS.gene055764.t1 AT2G17800 85.955 178 25 0 1 178 1 178 3.53e-117 331
MS.gene055764.t1 AT2G17800 85.955 178 25 0 1 178 1 178 3.53e-117 331
MS.gene055764.t1 AT4G35950 84.831 178 27 0 1 178 1 178 4.44e-116 328
MS.gene055764.t1 AT3G48040 82.123 179 32 0 2 180 4 182 7.19e-113 320
MS.gene055764.t1 AT5G62880 81.006 179 34 0 2 180 4 182 4.80e-112 318
MS.gene055764.t1 AT4G28950 76.684 193 41 2 1 191 1 191 2.65e-111 317
MS.gene055764.t1 AT2G44690 78.261 184 40 0 6 189 18 201 5.28e-109 311
MS.gene055764.t1 AT5G62880 79.070 172 32 1 2 173 4 171 2.52e-103 296
MS.gene055764.t1 AT3G48040 81.595 163 30 0 2 164 4 166 2.00e-102 293
MS.gene055764.t1 AT3G51290 85.517 145 21 0 34 178 635 779 9.70e-88 274
MS.gene055764.t1 AT4G35020 90.000 120 12 0 1 120 1 120 6.39e-81 237
MS.gene055764.t1 AT4G35020 90.000 120 12 0 1 120 1 120 6.39e-81 237
MS.gene055764.t1 AT1G43890 32.402 179 106 5 6 181 13 179 2.27e-26 100
MS.gene055764.t1 AT1G43890 32.402 179 106 5 6 181 13 179 2.27e-26 100
MS.gene055764.t1 AT1G43890 32.402 179 106 5 6 181 13 179 2.27e-26 100
MS.gene055764.t1 AT3G46060 33.533 167 98 5 6 170 15 170 2.89e-26 100
MS.gene055764.t1 AT3G46060 33.533 167 98 5 6 170 15 170 2.89e-26 100
MS.gene055764.t1 AT3G46060 33.533 167 98 5 6 170 15 170 2.89e-26 100
MS.gene055764.t1 AT4G35860 32.044 181 109 5 1 179 1 169 7.01e-26 99.4
MS.gene055764.t1 AT3G54840 33.333 177 103 5 7 180 34 198 8.80e-26 99.0
MS.gene055764.t1 AT3G53610 31.818 176 107 5 6 179 15 179 1.28e-25 99.0
MS.gene055764.t1 AT3G53610 31.818 176 107 5 6 179 15 179 1.28e-25 99.0
MS.gene055764.t1 AT3G53610 31.818 176 107 5 6 179 15 179 1.28e-25 99.0
MS.gene055764.t1 AT3G54840 33.929 168 96 5 7 171 34 189 1.55e-25 98.2
MS.gene055764.t1 AT5G59840 31.818 176 107 5 6 179 15 179 2.72e-25 98.2
MS.gene055764.t1 AT4G17170 31.977 172 103 5 1 170 1 160 3.21e-25 97.8
MS.gene055764.t1 AT3G54840 33.333 174 101 5 10 180 3 164 3.45e-25 96.7
MS.gene055764.t1 AT4G17160 30.814 172 105 5 1 170 1 160 1.08e-23 93.6
MS.gene055764.t1 AT1G18200 33.702 181 106 5 6 184 13 181 1.83e-23 93.6
MS.gene055764.t1 AT4G39890 35.294 170 94 6 4 170 8 164 4.18e-23 92.4
MS.gene055764.t1 AT1G16920 31.868 182 110 5 6 185 13 182 6.95e-23 91.7
MS.gene055764.t1 AT5G03530 29.944 177 109 5 8 181 15 179 1.15e-22 90.9
MS.gene055764.t1 AT5G03530 29.944 177 109 5 8 181 15 179 1.15e-22 90.9
MS.gene055764.t1 AT3G09900 33.523 176 104 5 6 179 15 179 1.22e-22 91.3
MS.gene055764.t1 AT1G73640 34.807 181 104 5 6 184 13 181 1.23e-22 91.7
MS.gene055764.t1 AT2G22290 36.364 165 91 5 8 170 11 163 1.95e-22 90.5
MS.gene055764.t1 AT1G02130 31.953 169 101 5 6 172 8 164 2.21e-22 90.1
MS.gene055764.t1 AT2G44610 35.758 165 92 5 8 170 11 163 5.62e-22 89.4
MS.gene055764.t1 AT5G45130 32.121 165 98 4 8 170 12 164 7.15e-22 88.6
MS.gene055764.t1 AT5G03520 33.523 176 104 5 6 179 15 179 1.10e-21 88.6
MS.gene055764.t1 AT4G19640 33.939 165 95 5 8 170 12 164 1.14e-21 88.2
MS.gene055764.t1 AT2G43130 30.220 182 113 5 6 185 12 181 1.56e-21 88.2
MS.gene055764.t1 AT5G10260 34.545 165 94 5 8 170 11 163 1.87e-21 87.8
MS.gene055764.t1 AT3G12160 35.152 165 93 5 8 170 17 169 2.22e-21 87.8
MS.gene055764.t1 AT3G11730 29.940 167 103 5 6 170 8 162 2.47e-21 87.4
MS.gene055764.t1 AT5G45130 31.902 163 97 4 10 170 22 172 2.71e-21 87.4
MS.gene055764.t1 AT1G09630 33.152 184 108 5 6 175 12 194 2.87e-21 87.4
MS.gene055764.t1 AT5G64990 35.758 165 92 5 8 170 9 161 4.36e-21 86.7
MS.gene055764.t1 AT2G31680 30.769 182 112 5 6 185 12 181 5.17e-21 87.0
MS.gene055764.t1 AT4G17530 30.481 187 111 7 6 185 8 182 1.02e-20 85.9
MS.gene055764.t1 AT5G47200 30.769 182 107 7 6 180 8 177 2.10e-20 84.7
MS.gene055764.t1 AT1G06400 32.609 184 107 6 6 187 13 181 3.16e-20 84.7
MS.gene055764.t1 AT1G22740 30.729 192 116 6 1 184 1 183 3.82e-20 84.3
MS.gene055764.t1 AT5G45750 32.335 167 99 5 6 170 13 167 6.72e-20 84.0
MS.gene055764.t1 AT5G65270 31.285 179 109 5 8 184 19 185 7.95e-20 84.0
MS.gene055764.t1 AT5G59150 30.387 181 112 5 6 184 12 180 8.10e-20 83.6
MS.gene055764.t1 AT4G18430 31.492 181 110 5 6 184 13 181 8.99e-20 83.6
MS.gene055764.t1 AT1G05810 30.220 182 113 5 6 185 12 181 9.27e-20 83.6
MS.gene055764.t1 AT4G18800 29.834 181 113 5 6 184 13 181 1.09e-19 83.2
MS.gene055764.t1 AT1G05810 31.579 171 103 5 6 174 58 216 1.19e-19 84.3
MS.gene055764.t1 AT5G47520 30.460 174 107 5 6 177 14 175 1.98e-19 82.8
MS.gene055764.t1 AT1G07410 29.834 181 113 5 6 184 12 180 2.13e-19 82.4
MS.gene055764.t1 AT3G15060 38.017 121 72 3 8 126 15 134 2.76e-19 82.4
MS.gene055764.t1 AT3G18820 29.032 186 117 5 6 185 8 184 2.89e-19 82.0
MS.gene055764.t1 AT4G19640 35.246 122 76 3 8 127 12 132 5.47e-19 79.7
MS.gene055764.t1 AT4G39990 30.723 166 101 5 8 171 19 172 6.59e-19 81.3
MS.gene055764.t1 AT3G46830 29.282 181 114 5 6 184 12 180 7.92e-19 81.3
MS.gene055764.t1 AT3G46830 29.282 181 114 5 6 184 12 180 7.92e-19 81.3
MS.gene055764.t1 AT3G07410 29.282 181 114 5 6 184 12 180 1.39e-18 80.5
MS.gene055764.t1 AT5G60860 36.585 123 75 3 6 126 13 134 1.45e-18 80.5
MS.gene055764.t1 AT5G47960 32.121 165 98 5 8 170 17 169 1.52e-18 80.5
MS.gene055764.t1 AT4G19640 35.246 122 76 3 8 127 12 132 1.62e-18 79.7
MS.gene055764.t1 AT1G28550 37.398 123 74 3 6 126 13 134 1.71e-18 80.1
MS.gene055764.t1 AT5G64990 34.302 172 92 6 8 170 9 168 2.00e-18 80.1
MS.gene055764.t1 AT2G21880 27.174 184 121 3 6 184 9 184 4.49e-18 79.0
MS.gene055764.t1 AT1G01200 32.121 165 99 5 8 170 30 183 6.38e-18 79.0
MS.gene055764.t1 AT2G33870 37.398 123 74 3 6 126 13 134 7.67e-18 78.6
MS.gene055764.t1 AT4G35860 32.090 134 78 4 47 179 2 123 1.89e-17 76.3
MS.gene055764.t1 AT1G52280 29.508 183 112 6 1 175 1 174 2.79e-17 76.6
MS.gene055764.t1 AT3G16100 28.495 186 118 5 6 185 8 184 9.63e-17 75.5
MS.gene055764.t1 AT4G09720 27.604 192 122 6 1 184 1 183 3.05e-16 73.9
MS.gene055764.t1 AT1G49300 29.240 171 106 5 6 170 8 169 6.05e-16 73.2
MS.gene055764.t1 AT1G49300 29.240 171 106 5 6 170 8 169 6.05e-16 73.2
MS.gene055764.t1 AT5G03520 33.582 134 77 4 47 179 47 169 1.37e-15 72.4
MS.gene055764.t1 AT3G09910 26.966 178 115 5 7 181 14 179 1.53e-15 72.0
MS.gene055764.t1 AT3G09910 26.966 178 115 5 7 181 14 179 1.53e-15 72.0
MS.gene055764.t1 AT3G09910 26.966 178 115 5 7 181 14 179 1.53e-15 72.0
MS.gene055764.t1 AT5G55080 32.479 117 77 2 7 122 14 129 3.44e-15 71.6
MS.gene055764.t1 AT3G09910 28.736 174 108 6 7 176 14 175 4.62e-15 70.5
MS.gene055764.t1 AT3G09910 28.736 174 108 6 7 176 14 175 4.62e-15 70.5
MS.gene055764.t1 AT5G27540 25.843 178 124 3 3 180 14 183 7.29e-15 72.4
MS.gene055764.t1 AT5G27540 25.843 178 124 3 3 180 14 183 7.29e-15 72.4
MS.gene055764.t1 AT4G09720 26.396 197 123 5 1 184 1 188 7.30e-15 70.5
MS.gene055764.t1 AT5G39620 26.943 193 128 4 7 194 6 190 1.21e-14 69.7
MS.gene055764.t1 AT3G63150 29.143 175 114 4 7 180 15 180 1.96e-14 71.2
MS.gene055764.t1 AT4G09720 25.616 203 123 5 1 184 1 194 6.11e-14 68.2
MS.gene055764.t1 AT5G59150 29.496 139 85 4 47 184 3 129 6.50e-13 64.3
MS.gene055764.t1 AT2G21880 25.749 167 111 3 23 184 1 159 3.92e-12 62.4
MS.gene055764.t1 AT2G21880 25.749 167 111 3 23 184 1 159 3.92e-12 62.4

Find 37 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACAGTTAATCTTGGATTA+TGG 0.198843 2.1:+10088273 MS.gene055764:CDS
TTTAGAGATATTCTCATAAC+TGG 0.310909 2.1:-10088684 None:intergenic
TTATGAGAATATCTCTAAAA+AGG 0.315067 2.1:+10088688 MS.gene055764:CDS
TGTTTAGCTCCTACCAAGTT+TGG 0.332301 2.1:-10088854 None:intergenic
CACAGTTAATCTTGGATTAT+GGG 0.369623 2.1:+10088274 MS.gene055764:CDS
AGTGCAAATGTTGTGGTTGA+TGG 0.385099 2.1:+10088248 MS.gene055764:CDS
CAGGACAAGAGGATTATAAC+AGG 0.405871 2.1:+10088597 MS.gene055764:intron
CTTAGGCCTTTGAGCTATAG+AGG 0.408891 2.1:+10088620 MS.gene055764:CDS
GATGGCAGCACAGTTAATCT+TGG 0.412892 2.1:+10088266 MS.gene055764:CDS
TTGCAGATTTGAGGGAAGAT+AGG 0.415340 2.1:+10088970 MS.gene055764:intron
GGAGCATAATGTCTCAGTTC+AGG 0.421519 2.1:-10088805 None:intergenic
TTGGTTCCCACAAGTACAAT+TGG 0.428473 2.1:-10088835 None:intergenic
TTATTGACTTGCAGATTTGA+GGG 0.432204 2.1:+10088962 MS.gene055764:intron
ATTATTGACTTGCAGATTTG+AGG 0.438305 2.1:+10088961 MS.gene055764:intron
GAAGAGCTGAAGAGGGCAAT+TGG 0.442300 2.1:+10089276 MS.gene055764:CDS
TTCATCAAATGTGTTACTGT+TGG 0.452151 2.1:+10088041 MS.gene055764:CDS
GTAGTTATAGCTGTAGCTCC+TGG 0.478794 2.1:-10089011 None:intergenic
GTACTTGTGGGAACCAAACT+TGG 0.487335 2.1:+10088841 MS.gene055764:CDS
AAGAGGATTATAACAGGCTT+AGG 0.490120 2.1:+10088603 MS.gene055764:CDS
TGTGTTTGATGCTGCAATCA+AGG 0.491064 2.1:+10089505 MS.gene055764:CDS
ACAAGTACAATTGGCACAGT+TGG 0.513226 2.1:-10088826 None:intergenic
AGGAGCAGATGTGTTCTTGT+TGG 0.514278 2.1:+10088640 MS.gene055764:CDS
GGCTCTGCTGAGTAGTGAAA+AGG 0.521685 2.1:-10088663 None:intergenic
AACTGTGCCAATTGTACTTG+TGG 0.525586 2.1:+10088828 MS.gene055764:CDS
TGCAATATTTCAGAATGTGA+AGG 0.527117 2.1:+10089481 MS.gene055764:intron
TACAGCTATAACTACTGCCC+AGG 0.559919 2.1:+10089019 MS.gene055764:CDS
ATGCAGCTCAAAGACTCAGC+AGG 0.566907 2.1:+10089317 MS.gene055764:CDS
CTTGGATTATGGGACACTGC+TGG 0.569014 2.1:+10088284 MS.gene055764:CDS
GGCAGGGTGAAGAGCTGAAG+AGG 0.570105 2.1:+10089268 MS.gene055764:intron
CAGTATTTGATTGATCATCC+AGG 0.575063 2.1:+10088993 MS.gene055764:CDS
ACTGTGCCAATTGTACTTGT+GGG 0.592943 2.1:+10088829 MS.gene055764:CDS
CACAAGCAATACATTCCCTA+CGG 0.607441 2.1:+10088103 MS.gene055764:CDS
ACTGTTGGAGATGGTGCTGT+TGG 0.608648 2.1:+10088056 MS.gene055764:CDS
TAACTTCAGTGCAAATGTTG+TGG 0.625689 2.1:+10088241 MS.gene055764:CDS
TCTGCTCCTCTATAGCTCAA+AGG 0.639148 2.1:-10088626 None:intergenic
AAATGTGTTACTGTTGGAGA+TGG 0.644647 2.1:+10088047 MS.gene055764:CDS
GCAGGGTGAAGAGCTGAAGA+GGG 0.664533 2.1:+10089269 MS.gene055764:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAATAATGTAAAATTTAT+GGG + chr2.1:10089247-10089266 MS.gene055764:intron 10.0%
!! GTAGTAATTTAATAATTAAT+TGG + chr2.1:10088929-10088948 MS.gene055764:intron 10.0%
!! TAAACATATATAACTTAATT+GGG + chr2.1:10088871-10088890 MS.gene055764:intron 10.0%
!!! TAATTTTTTCATAAAAATTC+AGG + chr2.1:10088578-10088597 MS.gene055764:intron 10.0%
!! ACAAATTATAAATCGTAAAA+CGG - chr2.1:10088340-10088359 None:intergenic 15.0%
!! ATGAAAAAATTAGTAAATCT+TGG - chr2.1:10088570-10088589 None:intergenic 15.0%
!! CACAAATAATGTAAAATTTA+TGG + chr2.1:10089246-10089265 MS.gene055764:intron 15.0%
!! CTAAACATATATAACTTAAT+TGG + chr2.1:10088870-10088889 MS.gene055764:intron 15.0%
!! TAATTATTAAATTACTACCA+AGG - chr2.1:10088927-10088946 None:intergenic 15.0%
!! TTAACATAATCAGAAATTAT+TGG + chr2.1:10089385-10089404 MS.gene055764:intron 15.0%
!!! TAACAAATTTAGTTTATGTT+TGG + chr2.1:10088158-10088177 MS.gene055764:intron 15.0%
!! ATTCCAAATAGTATTTAAGT+TGG + chr2.1:10089127-10089146 MS.gene055764:intron 20.0%
!! CATATATAGTTATATACTCA+TGG + chr2.1:10089357-10089376 MS.gene055764:intron 20.0%
!!! TTATGAGAATATCTCTAAAA+AGG + chr2.1:10088688-10088707 MS.gene055764:CDS 20.0%
!!! TTCACTTGTGAATTTTTATA+TGG + chr2.1:10088731-10088750 MS.gene055764:intron 20.0%
!!! TTTCTTTTTTTCTTTTGCTT+AGG - chr2.1:10089545-10089564 None:intergenic 20.0%
! ATAATGTAAAATTTATGGGC+AGG + chr2.1:10089251-10089270 MS.gene055764:intron 25.0%
! ATGCCAACTTAAATACTATT+TGG - chr2.1:10089133-10089152 None:intergenic 25.0%
! TAAGTAGCAAAGACATTTAA+CGG + chr2.1:10088373-10088392 MS.gene055764:intron 25.0%
! TAATGTAAAATTTATGGGCA+GGG + chr2.1:10089252-10089271 MS.gene055764:intron 25.0%
! TCATACAAATTTGTAGGAAT+TGG + chr2.1:10089046-10089065 MS.gene055764:intron 25.0%
! TTTAGAGATATTCTCATAAC+TGG - chr2.1:10088687-10088706 None:intergenic 25.0%
!!! CTTGTTCTTGTTTTTTTTGA+AGG + chr2.1:10088196-10088215 MS.gene055764:intron 25.0%
ACAAATTTGTATGACTTACC+TGG - chr2.1:10089040-10089059 None:intergenic 30.0%
ACTATTAATTACACACAGAG+AGG - chr2.1:10088537-10088556 None:intergenic 30.0%
CAAATTTGTATGACTTACCT+GGG - chr2.1:10089039-10089058 None:intergenic 30.0%
CACAAAAACAACATTCTATC+TGG - chr2.1:10088470-10088489 None:intergenic 30.0%
CACAGTTAATCTTGGATTAT+GGG + chr2.1:10088274-10088293 MS.gene055764:CDS 30.0%
CTGAAGTTATCAAAAACTGT+AGG - chr2.1:10088230-10088249 None:intergenic 30.0%
GGTAAGTCATACAAATTTGT+AGG + chr2.1:10089040-10089059 MS.gene055764:intron 30.0%
TCATAAAAATTCAGGACAAG+AGG + chr2.1:10088586-10088605 MS.gene055764:intron 30.0%
TGCAATATTTCAGAATGTGA+AGG + chr2.1:10089481-10089500 MS.gene055764:intron 30.0%
TTACGATAAAAGTTTAGCCT+TGG + chr2.1:10088907-10088926 MS.gene055764:intron 30.0%
TTAGTACAAAGCTAATAGTG+TGG - chr2.1:10089447-10089466 None:intergenic 30.0%
! TGCTGGTAAGAATTTTCTTT+AGG + chr2.1:10088301-10088320 MS.gene055764:intron 30.0%
! TGGTAAGAATTTTCTTTAGG+TGG + chr2.1:10088304-10088323 MS.gene055764:intron 30.0%
! TTCATCAAATGTGTTACTGT+TGG + chr2.1:10088041-10088060 MS.gene055764:CDS 30.0%
!! ATTATTGACTTGCAGATTTG+AGG + chr2.1:10088961-10088980 MS.gene055764:intron 30.0%
!! TTATTGACTTGCAGATTTGA+GGG + chr2.1:10088962-10088981 MS.gene055764:intron 30.0%
!!! CTTTTTTTCTTTTGCTTAGG+AGG - chr2.1:10089542-10089561 None:intergenic 30.0%
AAGAGGATTATAACAGGCTT+AGG + chr2.1:10088603-10088622 MS.gene055764:CDS 35.0%
CAGTATTTGATTGATCATCC+AGG + chr2.1:10088993-10089012 MS.gene055764:CDS 35.0%
GCACAGTTAATCTTGGATTA+TGG + chr2.1:10088273-10088292 MS.gene055764:CDS 35.0%
TAACTTCAGTGCAAATGTTG+TGG + chr2.1:10088241-10088260 MS.gene055764:CDS 35.0%
! AAATGTGTTACTGTTGGAGA+TGG + chr2.1:10088047-10088066 MS.gene055764:CDS 35.0%
! ATGTGTTGTTATCATACCGT+AGG - chr2.1:10088122-10088141 None:intergenic 35.0%
! CACGCTATCAAGGTTTTTAT+AGG + chr2.1:10089211-10089230 MS.gene055764:intron 35.0%
! CACTAGCTAATTTTATGCAG+TGG + chr2.1:10088779-10088798 MS.gene055764:intron 35.0%
! TGTGTTGTTATCATACCGTA+GGG - chr2.1:10088121-10088140 None:intergenic 35.0%
AACTGTGCCAATTGTACTTG+TGG + chr2.1:10088828-10088847 MS.gene055764:CDS 40.0%
AATTGAGAGATCTCAGTCGT+TGG - chr2.1:10089176-10089195 None:intergenic 40.0%
ACAAGTACAATTGGCACAGT+TGG - chr2.1:10088829-10088848 None:intergenic 40.0%
ACTGTGCCAATTGTACTTGT+GGG + chr2.1:10088829-10088848 MS.gene055764:CDS 40.0%
AGTGCAAATGTTGTGGTTGA+TGG + chr2.1:10088248-10088267 MS.gene055764:CDS 40.0%
ATTGCGTTAACACGCTATCA+AGG + chr2.1:10089201-10089220 MS.gene055764:intron 40.0%
CACAAGCAATACATTCCCTA+CGG + chr2.1:10088103-10088122 MS.gene055764:CDS 40.0%
CAGGACAAGAGGATTATAAC+AGG + chr2.1:10088597-10088616 MS.gene055764:intron 40.0%
TGTGTTTGATGCTGCAATCA+AGG + chr2.1:10089505-10089524 MS.gene055764:CDS 40.0%
TTGCAGATTTGAGGGAAGAT+AGG + chr2.1:10088970-10088989 MS.gene055764:intron 40.0%
TTGGTTCCCACAAGTACAAT+TGG - chr2.1:10088838-10088857 None:intergenic 40.0%
! TGTTTAGCTCCTACCAAGTT+TGG - chr2.1:10088857-10088876 None:intergenic 40.0%
AGGAGCAGATGTGTTCTTGT+TGG + chr2.1:10088640-10088659 MS.gene055764:CDS 45.0%
AGTCGTCTAGCCATCATTAG+CGG - chr2.1:10089104-10089123 None:intergenic 45.0%
CAGATTTCAGCCGCTAATGA+TGG + chr2.1:10089091-10089110 MS.gene055764:intron 45.0%
CTTAGGCCTTTGAGCTATAG+AGG + chr2.1:10088620-10088639 MS.gene055764:CDS 45.0%
GATGGCAGCACAGTTAATCT+TGG + chr2.1:10088266-10088285 MS.gene055764:CDS 45.0%
GGAGCATAATGTCTCAGTTC+AGG - chr2.1:10088808-10088827 None:intergenic 45.0%
GTACTTGTGGGAACCAAACT+TGG + chr2.1:10088841-10088860 MS.gene055764:CDS 45.0%
GTAGTTATAGCTGTAGCTCC+TGG - chr2.1:10089014-10089033 None:intergenic 45.0%
TACAGCTATAACTACTGCCC+AGG + chr2.1:10089019-10089038 MS.gene055764:CDS 45.0%
TCTGCTCCTCTATAGCTCAA+AGG - chr2.1:10088629-10088648 None:intergenic 45.0%
TTGTGGGAACCAAACTTGGT+AGG + chr2.1:10088845-10088864 MS.gene055764:intron 45.0%
ATGCAGCTCAAAGACTCAGC+AGG + chr2.1:10089317-10089336 MS.gene055764:CDS 50.0%
CTTGGATTATGGGACACTGC+TGG + chr2.1:10088284-10088303 MS.gene055764:CDS 50.0%
GAAGAGCTGAAGAGGGCAAT+TGG + chr2.1:10089276-10089295 MS.gene055764:CDS 50.0%
GGCTCTGCTGAGTAGTGAAA+AGG - chr2.1:10088666-10088685 None:intergenic 50.0%
!! ACTGTTGGAGATGGTGCTGT+TGG + chr2.1:10088056-10088075 MS.gene055764:CDS 50.0%
GCAGGGTGAAGAGCTGAAGA+GGG + chr2.1:10089269-10089288 MS.gene055764:intron 55.0%
GGCAGGGTGAAGAGCTGAAG+AGG + chr2.1:10089268-10089287 MS.gene055764:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 10088026 10089592 10088026 ID=MS.gene055764
chr2.1 mRNA 10088026 10089592 10088026 ID=MS.gene055764.t1;Parent=MS.gene055764
chr2.1 exon 10088026 10088124 10088026 ID=MS.gene055764.t1.exon1;Parent=MS.gene055764.t1
chr2.1 CDS 10088026 10088124 10088026 ID=cds.MS.gene055764.t1;Parent=MS.gene055764.t1
chr2.1 exon 10088218 10088305 10088218 ID=MS.gene055764.t1.exon2;Parent=MS.gene055764.t1
chr2.1 CDS 10088218 10088305 10088218 ID=cds.MS.gene055764.t1;Parent=MS.gene055764.t1
chr2.1 exon 10088600 10088709 10088600 ID=MS.gene055764.t1.exon3;Parent=MS.gene055764.t1
chr2.1 CDS 10088600 10088709 10088600 ID=cds.MS.gene055764.t1;Parent=MS.gene055764.t1
chr2.1 exon 10088799 10088862 10088799 ID=MS.gene055764.t1.exon4;Parent=MS.gene055764.t1
chr2.1 CDS 10088799 10088862 10088799 ID=cds.MS.gene055764.t1;Parent=MS.gene055764.t1
chr2.1 exon 10088976 10089040 10088976 ID=MS.gene055764.t1.exon5;Parent=MS.gene055764.t1
chr2.1 CDS 10088976 10089040 10088976 ID=cds.MS.gene055764.t1;Parent=MS.gene055764.t1
chr2.1 exon 10089273 10089338 10089273 ID=MS.gene055764.t1.exon6;Parent=MS.gene055764.t1
chr2.1 CDS 10089273 10089338 10089273 ID=cds.MS.gene055764.t1;Parent=MS.gene055764.t1
chr2.1 exon 10089494 10089592 10089494 ID=MS.gene055764.t1.exon7;Parent=MS.gene055764.t1
chr2.1 CDS 10089494 10089592 10089494 ID=cds.MS.gene055764.t1;Parent=MS.gene055764.t1
Gene Sequence

>MS.gene055764

ATGAGTACAGCAAGATTCATCAAATGTGTTACTGTTGGAGATGGTGCTGTTGGAAAGACTTGTATGCTTATCTCTTACACAAGCAATACATTCCCTACGGTATGATAACAACACATGATGTTTTTTTTGTTTTAACAAATTTAGTTTATGTTTGGTTGATAACAAATTTTCTTGTTCTTGTTTTTTTTGAAGGATTATGTGCCTACAGTTTTTGATAACTTCAGTGCAAATGTTGTGGTTGATGGCAGCACAGTTAATCTTGGATTATGGGACACTGCTGGTAAGAATTTTCTTTAGGTGGTAACGAATCTCCGTTTTACGATTTATAATTTGTTGTGTTCAATTATTAAGTAGCAAAGACATTTAACGGTATATCATATTAGACATATATCAATGTTGTGTATCAACAATTAAGCATCTACTCTGAGACGTCGTCTTGTGCCAGATAGAATGTTGTTTTTGTGTTAATATATTTCATTTTGACTTGTTCGAAAGAAAAAATGTTAAGCCTCTCTGTGTGTAATTAATAGTTATTATTGATCCAAGATTTACTAATTTTTTCATAAAAATTCAGGACAAGAGGATTATAACAGGCTTAGGCCTTTGAGCTATAGAGGAGCAGATGTGTTCTTGTTGGCCTTTTCACTACTCAGCAGAGCCAGTTATGAGAATATCTCTAAAAAGGTTATTGTGAAGTCACATTTATTCACTTGTGAATTTTTATATGGTATAGTTTTATTCAATTGAATCTAACACTAGCTAATTTTATGCAGTGGATTCCTGAACTGAGACATTATGCTCCAACTGTGCCAATTGTACTTGTGGGAACCAAACTTGGTAGGAGCTAAACATATATAACTTAATTGGGAATTTAATGTTACTTACGATAAAAGTTTAGCCTTGGTAGTAATTTAATAATTAATTGGAACTTTTATATTATTGACTTGCAGATTTGAGGGAAGATAGGCAGTATTTGATTGATCATCCAGGAGCTACAGCTATAACTACTGCCCAGGTAAGTCATACAAATTTGTAGGAATTGGATTCTATGCAGTCACACAGTTGCAGATTTCAGCCGCTAATGATGGCTAGACGACTCGTATTCCAAATAGTATTTAAGTTGGCATACGAGTCGTCTGATTTTCATCCAACGACTGAGATCTCTCAATTGCTTGATTGCGTTAACACGCTATCAAGGTTTTTATAGGTTTTTTAGAGTACACAAATAATGTAAAATTTATGGGCAGGGTGAAGAGCTGAAGAGGGCAATTGGTGCAGCAGTGTACTTAGAATGCAGCTCAAAGACTCAGCAGGTTCTGTTTTTTTTAATGCATATATAGTTATATACTCATGGTTATTTTAACATAATCAGAAATTATTGGTAGAACATGTTACAATTAAAGATCTACTAATATTGACCACACTATTAGCTTTGTACTAATGTTATGTGTTTATTGCAATATTTCAGAATGTGAAGGCTGTGTTTGATGCTGCAATCAAGGTTGTTTTGCAGCCTCCTAAGCAAAAGAAAAAAAGAAAGAAGAACAGATCATGTATTTTCCTTTAA

Protein sequence

>MS.gene055764.t1

MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKLDLREDRQYLIDHPGATAITTAQGEELKRAIGAAVYLECSSKTQQNVKAVFDAAIKVVLQPPKQKKKRKKNRSCIFL