Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069569.t1 | XP_013447137.1 | 88.7 | 266 | 13 | 2 | 1 | 249 | 46 | 311 | 2.60E-126 | 461.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069569.t1 | A0A072TUG0 | 88.7 | 266 | 13 | 2 | 1 | 249 | 46 | 311 | 1.8e-126 | 461.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene069569 | 0.817061 | 4.01E-52 | -1.69E-46 |
| MS.gene053083 | MS.gene069569 | -0.826295 | 2.93E-54 | -1.69E-46 |
| MS.gene059837 | MS.gene069569 | 0.820723 | 5.90E-53 | -1.69E-46 |
| MS.gene05996 | MS.gene069569 | 0.820015 | 8.57E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069569.t1 | MTR_8g099085 | 88.722 | 266 | 13 | 2 | 1 | 249 | 46 | 311 | 3.41e-167 | 465 |
| MS.gene069569.t1 | MTR_1g099420 | 56.981 | 265 | 97 | 4 | 1 | 249 | 47 | 310 | 2.21e-101 | 298 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069569.t1 | AT5G60750 | 63.296 | 267 | 74 | 4 | 1 | 249 | 55 | 315 | 6.72e-108 | 315 |
Find 67 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAGTGACAAGGCTAAAT+AGG | 0.223638 | 4.2:-5285569 | None:intergenic |
| TTCTTTGGACATCGGCATTT+TGG | 0.234853 | 4.2:+5285467 | MS.gene069569:CDS |
| TGGTCTATAATTTCCGGTTT+GGG | 0.258555 | 4.2:-5283041 | None:intergenic |
| TCCTTGCTGAAGCAGTTATA+TGG | 0.260247 | 4.2:-5285522 | None:intergenic |
| ACACCACACAGGCATGTATT+TGG | 0.285573 | 4.2:-5285925 | None:intergenic |
| ATGCTGCCACTTATATTTCT+TGG | 0.297795 | 4.2:+5286002 | MS.gene069569:CDS |
| AATTGAGTATTCTGTGCTTT+AGG | 0.300509 | 4.2:+5282991 | MS.gene069569:CDS |
| AGTTTAGCCAGGAAGGAAAA+TGG | 0.331230 | 4.2:+5285670 | MS.gene069569:CDS |
| TGACGCAGGTTATGCTTCTT+TGG | 0.340055 | 4.2:+5285452 | MS.gene069569:intron |
| AAACAGTGGTCTATAATTTC+CGG | 0.342884 | 4.2:-5283047 | None:intergenic |
| GCCTGTGTGGTGTGCAATAC+TGG | 0.349411 | 4.2:+5285935 | MS.gene069569:CDS |
| TGCTGCCACTTATATTTCTT+GGG | 0.375579 | 4.2:+5286003 | MS.gene069569:CDS |
| GTGGTCTATAATTTCCGGTT+TGG | 0.379283 | 4.2:-5283042 | None:intergenic |
| TCATGTTTCCTCTTGTCAAT+CGG | 0.417015 | 4.2:+5285718 | MS.gene069569:CDS |
| ACTGGAAGTCAATCATTCTA+AGG | 0.423395 | 4.2:+5283123 | MS.gene069569:CDS |
| ATCAGTGACAAGGCTAAATA+GGG | 0.430586 | 4.2:-5285568 | None:intergenic |
| TCCGTCCCCTTCCACCCGAC+TGG | 0.444389 | 4.2:+5285643 | MS.gene069569:CDS |
| GCCACTTATATTTCTTGGGA+TGG | 0.450363 | 4.2:+5286007 | MS.gene069569:CDS |
| TCGATGGCAGGATGGGTAGT+AGG | 0.477125 | 4.2:-5285761 | None:intergenic |
| TGATTGTTCAACACTTGAAA+GGG | 0.482634 | 4.2:-5285793 | None:intergenic |
| TTGATTGTTCAACACTTGAA+AGG | 0.487389 | 4.2:-5285794 | None:intergenic |
| GGTCTATAATTTCCGGTTTG+GGG | 0.493762 | 4.2:-5283040 | None:intergenic |
| ATCGGTCTGCGCTCCTGTGT+GGG | 0.497992 | 4.2:+5285863 | MS.gene069569:CDS |
| CCTTGCTGAAGCAGTTATAT+GGG | 0.499967 | 4.2:-5285521 | None:intergenic |
| CTTGAACCAGTCGGGTGGAA+GGG | 0.500064 | 4.2:-5285649 | None:intergenic |
| ACCTGTGTCGATGGCAGGAT+GGG | 0.500774 | 4.2:-5285768 | None:intergenic |
| TCAACAGGATTGGTAATCGA+TGG | 0.506798 | 4.2:+5285217 | MS.gene069569:intron |
| AATTGGTGCAATCTGAATCA+AGG | 0.508090 | 4.2:+5283078 | MS.gene069569:CDS |
| TTGAACCAGTCGGGTGGAAG+GGG | 0.510746 | 4.2:-5285648 | None:intergenic |
| GCAGTTATATGGGCTGCAAA+AGG | 0.514517 | 4.2:-5285511 | None:intergenic |
| TATCGGTCTGCGCTCCTGTG+TGG | 0.516259 | 4.2:+5285862 | MS.gene069569:CDS |
| TGGCTAAACTTGAACCAGTC+GGG | 0.525402 | 4.2:-5285657 | None:intergenic |
| CGACTGGTTCAAGTTTAGCC+AGG | 0.527735 | 4.2:+5285659 | MS.gene069569:CDS |
| GACCTGTGTCGATGGCAGGA+TGG | 0.530416 | 4.2:-5285769 | None:intergenic |
| GATGTAACTGAAGGACTAGC+TGG | 0.531776 | 4.2:+5285588 | MS.gene069569:CDS |
| ACTTGAACCAGTCGGGTGGA+AGG | 0.533549 | 4.2:-5285650 | None:intergenic |
| GTTGTATGCAATTGTAGTAT+CGG | 0.544728 | 4.2:+5285845 | MS.gene069569:CDS |
| GGGTGACCTGTGTCGATGGC+AGG | 0.545730 | 4.2:-5285773 | None:intergenic |
| CAACAGGATTGGTAATCGAT+GGG | 0.549705 | 4.2:+5285218 | MS.gene069569:intron |
| AATATGGTCGTTGCACTCCA+TGG | 0.550589 | 4.2:-5285246 | None:intergenic |
| ACCATCCCAAGAAATATAAG+TGG | 0.557728 | 4.2:-5286008 | None:intergenic |
| TTGAACAATCAATAAAAGCA+AGG | 0.561023 | 4.2:+5285805 | MS.gene069569:CDS |
| GCATGTATTTGGTAAGTGAC+GGG | 0.563519 | 4.2:-5285914 | None:intergenic |
| ACCAGTCGGGTGGAAGGGGA+CGG | 0.564379 | 4.2:-5285644 | None:intergenic |
| GGTTATGCTTCTTTGGACAT+CGG | 0.565940 | 4.2:+5285459 | MS.gene069569:intron |
| GGCATGTATTTGGTAAGTGA+CGG | 0.567093 | 4.2:-5285915 | None:intergenic |
| CTGGCTAAACTTGAACCAGT+CGG | 0.571812 | 4.2:-5285658 | None:intergenic |
| GTCTATAATTTCCGGTTTGG+GGG | 0.581343 | 4.2:-5283039 | None:intergenic |
| TGGTTCAAGTTTAGCCAGGA+AGG | 0.584103 | 4.2:+5285663 | MS.gene069569:CDS |
| ATTGGTGCAATCTGAATCAA+GGG | 0.594008 | 4.2:+5283079 | MS.gene069569:CDS |
| TGAGAGAGCCGATTGACAAG+AGG | 0.610131 | 4.2:-5285726 | None:intergenic |
| GCAGGATGGGTAGTAGGTCA+AGG | 0.610496 | 4.2:-5285755 | None:intergenic |
| GCATACAACAACATTGCCAC+AGG | 0.610600 | 4.2:-5285831 | None:intergenic |
| TGAACAATCAATAAAAGCAA+GGG | 0.613230 | 4.2:+5285806 | MS.gene069569:CDS |
| GGTCTGCGCTCCTGTGTGGG+AGG | 0.621158 | 4.2:+5285866 | MS.gene069569:CDS |
| GTAATCGATGGGTTGTACCA+TGG | 0.622454 | 4.2:+5285229 | MS.gene069569:CDS |
| CTTGTCACTGATGTAACTGA+AGG | 0.627885 | 4.2:+5285579 | MS.gene069569:CDS |
| ACCCATCCTGCCATCGACAC+AGG | 0.628035 | 4.2:+5285767 | MS.gene069569:CDS |
| ACCAGTATTGCACACCACAC+AGG | 0.628546 | 4.2:-5285936 | None:intergenic |
| CTAAACTTGAACCAGTCGGG+TGG | 0.635392 | 4.2:-5285654 | None:intergenic |
| AATAAAAGCAAGGGATCCTG+TGG | 0.652461 | 4.2:+5285815 | MS.gene069569:CDS |
| GAAAGGGTGACCTGTGTCGA+TGG | 0.653532 | 4.2:-5285777 | None:intergenic |
| CTTCAGTTACATCAGTGACA+AGG | 0.657659 | 4.2:-5285578 | None:intergenic |
| AAAACTATTTCCTCCCACAC+AGG | 0.659992 | 4.2:-5285876 | None:intergenic |
| TTACCAAATACATGCCTGTG+TGG | 0.698661 | 4.2:+5285922 | MS.gene069569:CDS |
| CCAATTCCTCATGAAAACAG+TGG | 0.701208 | 4.2:-5283061 | None:intergenic |
| GTGACGGGAGTAGAAAACCG+CGG | 0.770907 | 4.2:-5285899 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATTAATGATATAATATAGA+TGG | + | chr4.2:5283794-5283813 | MS.gene069569:intron | 15.0% |
| !! | GTAAATATATGTTTGTATTT+AGG | + | chr4.2:5283633-5283652 | MS.gene069569:intron | 15.0% |
| !! | AAAAATACCAAACAATCAAA+AGG | - | chr4.2:5284293-5284312 | None:intergenic | 20.0% |
| !! | AACAATATATTAACTGAAAG+TGG | + | chr4.2:5283569-5283588 | MS.gene069569:intron | 20.0% |
| !! | AATATTCGTTATCAATGAAT+AGG | + | chr4.2:5283208-5283227 | MS.gene069569:intron | 20.0% |
| !! | ATATAAAAGAAATGTCCAAT+TGG | - | chr4.2:5283706-5283725 | None:intergenic | 20.0% |
| !! | ATTGTTAGGATTATGAAAAT+AGG | - | chr4.2:5284423-5284442 | None:intergenic | 20.0% |
| !! | TATAAAAGAAATGTCCAATT+GGG | - | chr4.2:5283705-5283724 | None:intergenic | 20.0% |
| !! | TTTGCTTACATAAAAACTAA+TGG | + | chr4.2:5283156-5283175 | MS.gene069569:intron | 20.0% |
| !!! | AGAAACACTTACTTTTAATA+TGG | - | chr4.2:5285265-5285284 | None:intergenic | 20.0% |
| !!! | AGAATCTTGATTTTGATTTT+AGG | + | chr4.2:5283952-5283971 | MS.gene069569:intron | 20.0% |
| !!! | GGTTTATTTCTATATCTTAA+AGG | - | chr4.2:5284137-5284156 | None:intergenic | 20.0% |
| !!! | TGATATATTTTTAACTGAGA+AGG | - | chr4.2:5284973-5284992 | None:intergenic | 20.0% |
| !!! | TTTATCTGAGATTAACTATA+TGG | - | chr4.2:5285054-5285073 | None:intergenic | 20.0% |
| ! | AATTGAGGAGAAGAAAAATA+GGG | + | chr4.2:5284354-5284373 | MS.gene069569:intron | 25.0% |
| ! | ACTATACAGCAGATATTATT+GGG | - | chr4.2:5283413-5283432 | None:intergenic | 25.0% |
| ! | AGAAACACTTCTCTATTATT+AGG | + | chr4.2:5283452-5283471 | MS.gene069569:intron | 25.0% |
| ! | ATAACAAGAGTAGTCATTTA+GGG | - | chr4.2:5284839-5284858 | None:intergenic | 25.0% |
| ! | ATGATACTGAATTCATTGTT+AGG | - | chr4.2:5284437-5284456 | None:intergenic | 25.0% |
| ! | ATGTAATAGAATGGAAAGAA+TGG | + | chr4.2:5284256-5284275 | MS.gene069569:intron | 25.0% |
| ! | ATTCACCATAAAACAGAAAT+AGG | - | chr4.2:5284733-5284752 | None:intergenic | 25.0% |
| ! | CTTAAAGGAAAAGTTATAGT+AGG | - | chr4.2:5284122-5284141 | None:intergenic | 25.0% |
| ! | GGATTGATAAAATATGTTCA+CGG | - | chr4.2:5283497-5283516 | None:intergenic | 25.0% |
| ! | GTAGTTAAAAGTTAGAGAAT+TGG | + | chr4.2:5284641-5284660 | MS.gene069569:intron | 25.0% |
| ! | TGAACAATCAATAAAAGCAA+GGG | + | chr4.2:5285806-5285825 | MS.gene069569:CDS | 25.0% |
| ! | TTAGTAATACAAGACACTAT+GGG | - | chr4.2:5284164-5284183 | None:intergenic | 25.0% |
| ! | TTATTAGGTATTTGCAGTAT+AGG | + | chr4.2:5283467-5283486 | MS.gene069569:intron | 25.0% |
| ! | TTGAACAATCAATAAAAGCA+AGG | + | chr4.2:5285805-5285824 | MS.gene069569:CDS | 25.0% |
| ! | TTTAGTAATACAAGACACTA+TGG | - | chr4.2:5284165-5284184 | None:intergenic | 25.0% |
| ! | TTTGAATTGATAGAAGGAAA+TGG | - | chr4.2:5284466-5284485 | None:intergenic | 25.0% |
| !! | AGTCTCTTTTGACAAAATTA+TGG | - | chr4.2:5283106-5283125 | None:intergenic | 25.0% |
| !! | ATAATTTTGTCAAAAGAGAC+TGG | + | chr4.2:5283105-5283124 | MS.gene069569:CDS | 25.0% |
| !!! | AATGGTTTTTTGTTTCTATG+CGG | + | chr4.2:5283174-5283193 | MS.gene069569:intron | 25.0% |
| !!! | TTTAGGCATTGAAGAATTAT+TGG | + | chr4.2:5283650-5283669 | MS.gene069569:intron | 25.0% |
| AAACAGTGGTCTATAATTTC+CGG | - | chr4.2:5283050-5283069 | None:intergenic | 30.0% | |
| AAATAGGAATCCTTTGTTGA+TGG | - | chr4.2:5284717-5284736 | None:intergenic | 30.0% | |
| AAATGATAATAGAGGGTCTT+AGG | + | chr4.2:5283882-5283901 | MS.gene069569:intron | 30.0% | |
| AAGGATTCTTTGACATTTAG+AGG | + | chr4.2:5285540-5285559 | MS.gene069569:intron | 30.0% | |
| AATAGGAATCCTTTGTTGAT+GGG | - | chr4.2:5284716-5284735 | None:intergenic | 30.0% | |
| AATGATAATAGAGGGTCTTA+GGG | + | chr4.2:5283883-5283902 | MS.gene069569:intron | 30.0% | |
| AATTGAGTATTCTGTGCTTT+AGG | + | chr4.2:5282991-5283010 | MS.gene069569:CDS | 30.0% | |
| AGGATTCTTTGACATTTAGA+GGG | + | chr4.2:5285541-5285560 | MS.gene069569:intron | 30.0% | |
| AGGTAATCTACGAATTTGAT+AGG | - | chr4.2:5284788-5284807 | None:intergenic | 30.0% | |
| ATTCCTCGCAGTTAAAATTT+AGG | + | chr4.2:5285335-5285354 | MS.gene069569:intron | 30.0% | |
| ATTGAGGAGAAGAAAAATAG+GGG | + | chr4.2:5284355-5284374 | MS.gene069569:intron | 30.0% | |
| CAAATTCGTAGATTACCTTA+AGG | + | chr4.2:5284790-5284809 | MS.gene069569:intron | 30.0% | |
| CAATTGAGGAGAAGAAAAAT+AGG | + | chr4.2:5284353-5284372 | MS.gene069569:intron | 30.0% | |
| CAGTTAGCTGTTAGTTAAAA+AGG | + | chr4.2:5284574-5284593 | MS.gene069569:intron | 30.0% | |
| CATAACAAGAGTAGTCATTT+AGG | - | chr4.2:5284840-5284859 | None:intergenic | 30.0% | |
| CATTACTGACGAATACATTT+AGG | + | chr4.2:5283356-5283375 | MS.gene069569:intron | 30.0% | |
| CCAGATTATAGACTAATTGA+AGG | + | chr4.2:5283824-5283843 | MS.gene069569:intron | 30.0% | |
| CCTATGTTTGAATTGATAGA+AGG | - | chr4.2:5284472-5284491 | None:intergenic | 30.0% | |
| CCTTCTATCAATTCAAACAT+AGG | + | chr4.2:5284469-5284488 | MS.gene069569:intron | 30.0% | |
| CTATACAGCAGATATTATTG+GGG | - | chr4.2:5283412-5283431 | None:intergenic | 30.0% | |
| GACTATACAGCAGATATTAT+TGG | - | chr4.2:5283414-5283433 | None:intergenic | 30.0% | |
| GACTTGCAAATGATAATAGA+GGG | + | chr4.2:5283875-5283894 | MS.gene069569:intron | 30.0% | |
| GATGTCTATAATAGGAAATC+AGG | + | chr4.2:5284606-5284625 | MS.gene069569:intron | 30.0% | |
| GTTACAATCAAACATGAGAA+AGG | - | chr4.2:5283598-5283617 | None:intergenic | 30.0% | |
| GTTCAATGTTCTTTCAATGT+AGG | + | chr4.2:5283735-5283754 | MS.gene069569:intron | 30.0% | |
| GTTGTATGCAATTGTAGTAT+CGG | + | chr4.2:5285845-5285864 | MS.gene069569:CDS | 30.0% | |
| TAACGTGTGATGTCTATAAT+AGG | + | chr4.2:5284598-5284617 | MS.gene069569:intron | 30.0% | |
| TAATGGTTAGTAGAATGAAG+TGG | + | chr4.2:5284229-5284248 | MS.gene069569:intron | 30.0% | |
| TAGACTAATTGAAGGTTCAA+TGG | + | chr4.2:5283832-5283851 | MS.gene069569:intron | 30.0% | |
| TGATTGTTCAACACTTGAAA+GGG | - | chr4.2:5285796-5285815 | None:intergenic | 30.0% | |
| TTCCTCGCAGTTAAAATTTA+GGG | + | chr4.2:5285336-5285355 | MS.gene069569:intron | 30.0% | |
| TTCTTATGTTTCAGTCCTTA+AGG | - | chr4.2:5284808-5284827 | None:intergenic | 30.0% | |
| TTGATTGTTCAACACTTGAA+AGG | - | chr4.2:5285797-5285816 | None:intergenic | 30.0% | |
| TTTATCACCATCAAAACTGA+TGG | - | chr4.2:5283277-5283296 | None:intergenic | 30.0% | |
| ! | AATCAAGATTCTGATAATGC+AGG | - | chr4.2:5283944-5283963 | None:intergenic | 30.0% |
| ! | AATGAAGTATTCAACAGGAT+TGG | + | chr4.2:5285207-5285226 | MS.gene069569:intron | 30.0% |
| ! | AATTTTACATTGCCAAGTCT+TGG | - | chr4.2:5284537-5284556 | None:intergenic | 30.0% |
| ! | ATTTTACATTGCCAAGTCTT+GGG | - | chr4.2:5284536-5284555 | None:intergenic | 30.0% |
| ! | CCTTCAATTAGTCTATAATC+TGG | - | chr4.2:5283827-5283846 | None:intergenic | 30.0% |
| ! | GATTTGAGACATATGATACT+CGG | + | chr4.2:5283768-5283787 | MS.gene069569:intron | 30.0% |
| ! | GTTAAAATTTAGGGTACATG+TGG | + | chr4.2:5285345-5285364 | MS.gene069569:intron | 30.0% |
| ! | TGACTTGCAAATGATAATAG+AGG | + | chr4.2:5283874-5283893 | MS.gene069569:intron | 30.0% |
| ! | TTTCAATGTAGGTTTGAAGT+GGG | + | chr4.2:5283746-5283765 | MS.gene069569:intron | 30.0% |
| !! | AGAAGAAAAATAGGGGTATT+GGG | + | chr4.2:5284362-5284381 | MS.gene069569:intron | 30.0% |
| !! | CTATTTTTCTTCTCCTCAAT+TGG | - | chr4.2:5284355-5284374 | None:intergenic | 30.0% |
| !! | GAAGTTACCTTTTGATTGTT+TGG | + | chr4.2:5284283-5284302 | MS.gene069569:intron | 30.0% |
| !! | TTGCACATTTTAACATACAG+AGG | + | chr4.2:5285979-5285998 | MS.gene069569:CDS | 30.0% |
| !!! | CATTTTGGTTTATAGGATCT+TGG | + | chr4.2:5285482-5285501 | MS.gene069569:CDS | 30.0% |
| !!! | GGATTCCTATTTCTGTTTTA+TGG | + | chr4.2:5284725-5284744 | MS.gene069569:intron | 30.0% |
| AAGAAATGTCCAATTGGGAA+TGG | - | chr4.2:5283700-5283719 | None:intergenic | 35.0% | |
| AATTGGTGCAATCTGAATCA+AGG | + | chr4.2:5283078-5283097 | MS.gene069569:CDS | 35.0% | |
| ACAGAAAATCGCATTCATCT+TGG | - | chr4.2:5284046-5284065 | None:intergenic | 35.0% | |
| ACTGACGAATACATTTAGGA+TGG | + | chr4.2:5283360-5283379 | MS.gene069569:intron | 35.0% | |
| ACTGGAAGTCAATCATTCTA+AGG | + | chr4.2:5283123-5283142 | MS.gene069569:CDS | 35.0% | |
| AGTGGAAGGATGTAATAGAA+TGG | + | chr4.2:5284247-5284266 | MS.gene069569:intron | 35.0% | |
| ATACAAGACACTATGGGATT+CGG | - | chr4.2:5284158-5284177 | None:intergenic | 35.0% | |
| ATATATCAAATGAACCCCGA+TGG | - | chr4.2:5284399-5284418 | None:intergenic | 35.0% | |
| ATCAGTGACAAGGCTAAATA+GGG | - | chr4.2:5285571-5285590 | None:intergenic | 35.0% | |
| ATTGGTGCAATCTGAATCAA+GGG | + | chr4.2:5283079-5283098 | MS.gene069569:CDS | 35.0% | |
| CCATTACATATCTCCAATTG+AGG | + | chr4.2:5284339-5284358 | MS.gene069569:intron | 35.0% | |
| CCTCAATTGGAGATATGTAA+TGG | - | chr4.2:5284342-5284361 | None:intergenic | 35.0% | |
| CTTGTATTACTAAACCCACA+AGG | + | chr4.2:5284171-5284190 | MS.gene069569:intron | 35.0% | |
| CTTTCAATGTAGGTTTGAAG+TGG | + | chr4.2:5283745-5283764 | MS.gene069569:intron | 35.0% | |
| GATTTCAACTCTGCTCAATT+GGG | - | chr4.2:5285387-5285406 | None:intergenic | 35.0% | |
| TATTTGCATCGCTTTGTCAA+TGG | + | chr4.2:5285005-5285024 | MS.gene069569:intron | 35.0% | |
| TCATGTTTCCTCTTGTCAAT+CGG | + | chr4.2:5285718-5285737 | MS.gene069569:CDS | 35.0% | |
| TGGTAATTGACAAGGAAGAA+GGG | - | chr4.2:5284759-5284778 | None:intergenic | 35.0% | |
| TGGTCTATAATTTCCGGTTT+GGG | - | chr4.2:5283044-5283063 | None:intergenic | 35.0% | |
| ! | ATGCTGCCACTTATATTTCT+TGG | + | chr4.2:5286002-5286021 | MS.gene069569:CDS | 35.0% |
| ! | CTGCAAATGAAGTATTCAAC+AGG | + | chr4.2:5285202-5285221 | MS.gene069569:intron | 35.0% |
| ! | GAGAAGAAAAATAGGGGTAT+TGG | + | chr4.2:5284361-5284380 | MS.gene069569:intron | 35.0% |
| ! | TAGAGCGTTTGGATTGTTAA+TGG | + | chr4.2:5284212-5284231 | MS.gene069569:intron | 35.0% |
| ! | TAGATTTTGCCATTCCCAAT+TGG | + | chr4.2:5283688-5283707 | MS.gene069569:intron | 35.0% |
| ! | TATAGACCACTGTTTTCATG+AGG | + | chr4.2:5283055-5283074 | MS.gene069569:CDS | 35.0% |
| ! | TGCTGCCACTTATATTTCTT+GGG | + | chr4.2:5286003-5286022 | MS.gene069569:CDS | 35.0% |
| ! | TTTTACATTGCCAAGTCTTG+GGG | - | chr4.2:5284535-5284554 | None:intergenic | 35.0% |
| !! | ATGGCATTTTGATGTTGTCA+TGG | + | chr4.2:5285689-5285708 | MS.gene069569:CDS | 35.0% |
| !! | TGGCATTTTGATGTTGTCAT+GGG | + | chr4.2:5285690-5285709 | MS.gene069569:CDS | 35.0% |
| !!! | ACATCGGCATTTTGGTTTAT+AGG | + | chr4.2:5285475-5285494 | MS.gene069569:CDS | 35.0% |
| !!! | TACCCTAAATTTTAACTGCG+AGG | - | chr4.2:5285341-5285360 | None:intergenic | 35.0% |
| AAAACTATTTCCTCCCACAC+AGG | - | chr4.2:5285879-5285898 | None:intergenic | 40.0% | |
| AATAAAAGCAAGGGATCCTG+TGG | + | chr4.2:5285815-5285834 | MS.gene069569:CDS | 40.0% | |
| AGTATCCATGTCTACCTTGT+GGG | - | chr4.2:5284188-5284207 | None:intergenic | 40.0% | |
| AGTTTAGCCAGGAAGGAAAA+TGG | + | chr4.2:5285670-5285689 | MS.gene069569:CDS | 40.0% | |
| ATCGCTTTGTCAATGGTTGA+TGG | + | chr4.2:5285012-5285031 | MS.gene069569:intron | 40.0% | |
| ATGGTGACACATACACTCTT+AGG | - | chr4.2:5284684-5284703 | None:intergenic | 40.0% | |
| ATGTGCAGAAAAGAAGCCTA+GGG | + | chr4.2:5283986-5284005 | MS.gene069569:intron | 40.0% | |
| CAAGGTAGACATGGATACTA+AGG | + | chr4.2:5284189-5284208 | MS.gene069569:intron | 40.0% | |
| CAAGTCTTGGGGTTGTATTT+GGG | - | chr4.2:5284524-5284543 | None:intergenic | 40.0% | |
| CAGTTGAGCGTTTATTGTTC+AGG | - | chr4.2:5285409-5285428 | None:intergenic | 40.0% | |
| CATCAGTGACAAGGCTAAAT+AGG | - | chr4.2:5285572-5285591 | None:intergenic | 40.0% | |
| CCAATTCCTCATGAAAACAG+TGG | - | chr4.2:5283064-5283083 | None:intergenic | 40.0% | |
| CCTTGCTGAAGCAGTTATAT+GGG | - | chr4.2:5285524-5285543 | None:intergenic | 40.0% | |
| CTGGTAATTGACAAGGAAGA+AGG | - | chr4.2:5284760-5284779 | None:intergenic | 40.0% | |
| CTTCAGTTACATCAGTGACA+AGG | - | chr4.2:5285581-5285600 | None:intergenic | 40.0% | |
| CTTGTCACTGATGTAACTGA+AGG | + | chr4.2:5285579-5285598 | MS.gene069569:CDS | 40.0% | |
| GAACAATAAACGCTCAACTG+AGG | + | chr4.2:5285409-5285428 | MS.gene069569:intron | 40.0% | |
| GACTGTTTGGGTGTTAAGAA+TGG | + | chr4.2:5283916-5283935 | MS.gene069569:intron | 40.0% | |
| GATGATGCAACCAAAATCTG+TGG | - | chr4.2:5284017-5284036 | None:intergenic | 40.0% | |
| GCATGTATTTGGTAAGTGAC+GGG | - | chr4.2:5285917-5285936 | None:intergenic | 40.0% | |
| GCTGGATATTGAACTCTCTA+GGG | + | chr4.2:5283546-5283565 | MS.gene069569:intron | 40.0% | |
| GGATTTCAACTCTGCTCAAT+TGG | - | chr4.2:5285388-5285407 | None:intergenic | 40.0% | |
| GGCATGTATTTGGTAAGTGA+CGG | - | chr4.2:5285918-5285937 | None:intergenic | 40.0% | |
| GGCTAAAACATTTCAGTAGC+TGG | + | chr4.2:5284490-5284509 | MS.gene069569:intron | 40.0% | |
| GGTAATTGACAAGGAAGAAG+GGG | - | chr4.2:5284758-5284777 | None:intergenic | 40.0% | |
| GGTTAGTAGAATGAAGTGGA+AGG | + | chr4.2:5284233-5284252 | MS.gene069569:intron | 40.0% | |
| GGTTATGCTTCTTTGGACAT+CGG | + | chr4.2:5285459-5285478 | MS.gene069569:intron | 40.0% | |
| GTGGTCTATAATTTCCGGTT+TGG | - | chr4.2:5283045-5283064 | None:intergenic | 40.0% | |
| TAATCGAGACCCATCAACAA+AGG | + | chr4.2:5284704-5284723 | MS.gene069569:intron | 40.0% | |
| TAGTATCCATGTCTACCTTG+TGG | - | chr4.2:5284189-5284208 | None:intergenic | 40.0% | |
| TCCTTGCTGAAGCAGTTATA+TGG | - | chr4.2:5285525-5285544 | None:intergenic | 40.0% | |
| TGAGACATATGATACTCGGA+TGG | + | chr4.2:5283772-5283791 | MS.gene069569:intron | 40.0% | |
| TGCAAGGAAATCAAGCCATT+GGG | - | chr4.2:5285180-5285199 | None:intergenic | 40.0% | |
| TGCTGGATATTGAACTCTCT+AGG | + | chr4.2:5283545-5283564 | MS.gene069569:intron | 40.0% | |
| TGGTGACACATACACTCTTA+GGG | - | chr4.2:5284683-5284702 | None:intergenic | 40.0% | |
| TTACCAAATACATGCCTGTG+TGG | + | chr4.2:5285922-5285941 | MS.gene069569:CDS | 40.0% | |
| TTAGAGAATTGGAGAGCTCT+TGG | + | chr4.2:5284652-5284671 | MS.gene069569:intron | 40.0% | |
| TTCTTTGACATTTAGAGGGC+AGG | + | chr4.2:5285545-5285564 | MS.gene069569:intron | 40.0% | |
| ! | AAAATCTGTGGTAATGCCCT+AGG | - | chr4.2:5284005-5284024 | None:intergenic | 40.0% |
| ! | CAACAGGATTGGTAATCGAT+GGG | + | chr4.2:5285218-5285237 | MS.gene069569:intron | 40.0% |
| ! | CCACTGTTTTCATGAGGAAT+TGG | + | chr4.2:5283061-5283080 | MS.gene069569:CDS | 40.0% |
| ! | GGTCAGATTGATGACTGTTT+GGG | + | chr4.2:5283904-5283923 | MS.gene069569:intron | 40.0% |
| ! | GGTCTATAATTTCCGGTTTG+GGG | - | chr4.2:5283043-5283062 | None:intergenic | 40.0% |
| ! | TCAACAGGATTGGTAATCGA+TGG | + | chr4.2:5285217-5285236 | MS.gene069569:intron | 40.0% |
| ! | TGTTGATGGGTCTCGATTAA+TGG | - | chr4.2:5284703-5284722 | None:intergenic | 40.0% |
| ! | TTCTTTGGACATCGGCATTT+TGG | + | chr4.2:5285467-5285486 | MS.gene069569:CDS | 40.0% |
| !! | GTCTATAATTTCCGGTTTGG+GGG | - | chr4.2:5283042-5283061 | None:intergenic | 40.0% |
| !! | TAGGGCATTACCACAGATTT+TGG | + | chr4.2:5284004-5284023 | MS.gene069569:intron | 40.0% |
| !!! | CAAAATGCCATTTTCCTTCC+TGG | - | chr4.2:5285680-5285699 | None:intergenic | 40.0% |
| !!! | GTTTTTTGTTTCTATGCGGC+TGG | + | chr4.2:5283178-5283197 | MS.gene069569:intron | 40.0% |
| AATATGGTCGTTGCACTCCA+TGG | - | chr4.2:5285249-5285268 | None:intergenic | 45.0% | |
| ACACCACACAGGCATGTATT+TGG | - | chr4.2:5285928-5285947 | None:intergenic | 45.0% | |
| ACCATCAAAACTGATGGCAG+GGG | - | chr4.2:5283271-5283290 | None:intergenic | 45.0% | |
| ACGAATTTGATAGGACCAGC+TGG | - | chr4.2:5284779-5284798 | None:intergenic | 45.0% | |
| ACTGAGAAGGAAGATGATGC+AGG | - | chr4.2:5284960-5284979 | None:intergenic | 45.0% | |
| AGGTTCAATGGATGTATGCG+AGG | + | chr4.2:5283844-5283863 | MS.gene069569:intron | 45.0% | |
| CAATGGCTTGATTTCCTTGC+AGG | + | chr4.2:5285179-5285198 | MS.gene069569:intron | 45.0% | |
| CACCATCAAAACTGATGGCA+GGG | - | chr4.2:5283272-5283291 | None:intergenic | 45.0% | |
| CCAAATACAACCCCAAGACT+TGG | + | chr4.2:5284522-5284541 | MS.gene069569:intron | 45.0% | |
| CCAAGTCTTGGGGTTGTATT+TGG | - | chr4.2:5284525-5284544 | None:intergenic | 45.0% | |
| CCCATATAACTGCTTCAGCA+AGG | + | chr4.2:5285521-5285540 | MS.gene069569:intron | 45.0% | |
| CTAAACCCACAAGGTAGACA+TGG | + | chr4.2:5284180-5284199 | MS.gene069569:intron | 45.0% | |
| CTGCAAGGAAATCAAGCCAT+TGG | - | chr4.2:5285181-5285200 | None:intergenic | 45.0% | |
| CTGGCTAAACTTGAACCAGT+CGG | - | chr4.2:5285661-5285680 | None:intergenic | 45.0% | |
| CTTCCTTGTCAATTACCAGC+TGG | + | chr4.2:5284761-5284780 | MS.gene069569:intron | 45.0% | |
| GACACATACACTCTTAGGGA+TGG | - | chr4.2:5284679-5284698 | None:intergenic | 45.0% | |
| GATGTGCAGAAAAGAAGCCT+AGG | + | chr4.2:5283985-5284004 | MS.gene069569:intron | 45.0% | |
| GCATAACCTGCGTCAAAGAT+TGG | - | chr4.2:5285447-5285466 | None:intergenic | 45.0% | |
| GCATACAACAACATTGCCAC+AGG | - | chr4.2:5285834-5285853 | None:intergenic | 45.0% | |
| GGTTCAATGGATGTATGCGA+GGG | + | chr4.2:5283845-5283864 | MS.gene069569:intron | 45.0% | |
| GTACGAGTCTGTTTACCCAA+TGG | + | chr4.2:5285162-5285181 | MS.gene069569:intron | 45.0% | |
| TACTTCATTTGCAGCCTGCA+AGG | - | chr4.2:5285196-5285215 | None:intergenic | 45.0% | |
| TAGGGTACATGTGGCAATCA+TGG | + | chr4.2:5285354-5285373 | MS.gene069569:intron | 45.0% | |
| TCACCATCAAAACTGATGGC+AGG | - | chr4.2:5283273-5283292 | None:intergenic | 45.0% | |
| TGACGCAGGTTATGCTTCTT+TGG | + | chr4.2:5285452-5285471 | MS.gene069569:intron | 45.0% | |
| TGGCTAAACTTGAACCAGTC+GGG | - | chr4.2:5285660-5285679 | None:intergenic | 45.0% | |
| TTCTTCAGAAACCCCCAAAC+CGG | + | chr4.2:5283028-5283047 | MS.gene069569:CDS | 45.0% | |
| TTGGGTGAAATGCGATCCAT+CGG | + | chr4.2:5284380-5284399 | MS.gene069569:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr4.2:5285114-5285133 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr4.2:5285115-5285134 | None:intergenic | 45.0% |
| ! | CAGTCAATCATAGGAAGTGC+TGG | + | chr4.2:5283528-5283547 | MS.gene069569:intron | 45.0% |
| ! | GATGTAACTGAAGGACTAGC+TGG | + | chr4.2:5285588-5285607 | MS.gene069569:CDS | 45.0% |
| ! | GCAGTTATATGGGCTGCAAA+AGG | - | chr4.2:5285514-5285533 | None:intergenic | 45.0% |
| ! | GGATACTAAGGTAGAGCGTT+TGG | + | chr4.2:5284201-5284220 | MS.gene069569:intron | 45.0% |
| ! | GGGTCAGATTGATGACTGTT+TGG | + | chr4.2:5283903-5283922 | MS.gene069569:intron | 45.0% |
| ! | TGGGAGGAAATAGTTTTCCG+CGG | + | chr4.2:5285882-5285901 | MS.gene069569:CDS | 45.0% |
| ! | TGGTTCAAGTTTAGCCAGGA+AGG | + | chr4.2:5285663-5285682 | MS.gene069569:CDS | 45.0% |
| !! | GTAATCGATGGGTTGTACCA+TGG | + | chr4.2:5285229-5285248 | MS.gene069569:CDS | 45.0% |
| ACCAGTATTGCACACCACAC+AGG | - | chr4.2:5285939-5285958 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr4.2:5285113-5285132 | MS.gene069569:intron | 50.0% | |
| CTAAACTTGAACCAGTCGGG+TGG | - | chr4.2:5285657-5285676 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr4.2:5285110-5285129 | None:intergenic | 50.0% | |
| GGACCAGCTGGTAATTGACA+AGG | - | chr4.2:5284767-5284786 | None:intergenic | 50.0% | |
| GTGCGACTGCAGTCAATCAT+AGG | + | chr4.2:5283519-5283538 | MS.gene069569:intron | 50.0% | |
| TGAGAGAGCCGATTGACAAG+AGG | - | chr4.2:5285729-5285748 | None:intergenic | 50.0% | |
| TGATTGACTGCAGTCGCACA+TGG | - | chr4.2:5283518-5283537 | None:intergenic | 50.0% | |
| TGGGTGAAATGCGATCCATC+GGG | + | chr4.2:5284381-5284400 | MS.gene069569:intron | 50.0% | |
| TTCGTGCCAATCTTTGACGC+AGG | + | chr4.2:5285438-5285457 | MS.gene069569:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr4.2:5285116-5285135 | None:intergenic | 50.0% |
| ! | CGACTGGTTCAAGTTTAGCC+AGG | + | chr4.2:5285659-5285678 | MS.gene069569:CDS | 50.0% |
| ACTTGAACCAGTCGGGTGGA+AGG | - | chr4.2:5285653-5285672 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr4.2:5285108-5285127 | MS.gene069569:intron | 55.0% | |
| CTTGAACCAGTCGGGTGGAA+GGG | - | chr4.2:5285652-5285671 | None:intergenic | 55.0% | |
| GAAAGGGTGACCTGTGTCGA+TGG | - | chr4.2:5285780-5285799 | None:intergenic | 55.0% | |
| GCAGGATGGGTAGTAGGTCA+AGG | - | chr4.2:5285758-5285777 | None:intergenic | 55.0% | |
| GCCTGTGTGGTGTGCAATAC+TGG | + | chr4.2:5285935-5285954 | MS.gene069569:CDS | 55.0% | |
| GGGTGAAATGCGATCCATCG+GGG | + | chr4.2:5284382-5284401 | MS.gene069569:intron | 55.0% | |
| TCGATGGCAGGATGGGTAGT+AGG | - | chr4.2:5285764-5285783 | None:intergenic | 55.0% | |
| TTGAACCAGTCGGGTGGAAG+GGG | - | chr4.2:5285651-5285670 | None:intergenic | 55.0% | |
| ! | ACCTGTGTCGATGGCAGGAT+GGG | - | chr4.2:5285771-5285790 | None:intergenic | 55.0% |
| ! | GTGACGGGAGTAGAAAACCG+CGG | - | chr4.2:5285902-5285921 | None:intergenic | 55.0% |
| !! | GCCCCTGCCATCAGTTTTGA+TGG | + | chr4.2:5283267-5283286 | MS.gene069569:intron | 55.0% |
| ACCCATCCTGCCATCGACAC+AGG | + | chr4.2:5285767-5285786 | MS.gene069569:CDS | 60.0% | |
| ATCGGTCTGCGCTCCTGTGT+GGG | + | chr4.2:5285863-5285882 | MS.gene069569:CDS | 60.0% | |
| GAGAGCCGACCCCACTTAGT+GGG | + | chr4.2:5285102-5285121 | MS.gene069569:intron | 60.0% | |
| TATCGGTCTGCGCTCCTGTG+TGG | + | chr4.2:5285862-5285881 | MS.gene069569:CDS | 60.0% | |
| ! | GACCTGTGTCGATGGCAGGA+TGG | - | chr4.2:5285772-5285791 | None:intergenic | 60.0% |
| ACCAGTCGGGTGGAAGGGGA+CGG | - | chr4.2:5285647-5285666 | None:intergenic | 65.0% | |
| CGAGAGCCGACCCCACTTAG+TGG | + | chr4.2:5285101-5285120 | MS.gene069569:intron | 65.0% | |
| ! | GGGTGACCTGTGTCGATGGC+AGG | - | chr4.2:5285776-5285795 | None:intergenic | 65.0% |
| GGTCTGCGCTCCTGTGTGGG+AGG | + | chr4.2:5285866-5285885 | MS.gene069569:CDS | 70.0% | |
| TCCGTCCCCTTCCACCCGAC+TGG | + | chr4.2:5285643-5285662 | MS.gene069569:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 5282990 | 5286028 | 5282990 | ID=MS.gene069569 |
| chr4.2 | mRNA | 5282990 | 5286028 | 5282990 | ID=MS.gene069569.t1;Parent=MS.gene069569 |
| chr4.2 | exon | 5282990 | 5283147 | 5282990 | ID=MS.gene069569.t1.exon1;Parent=MS.gene069569.t1 |
| chr4.2 | CDS | 5282990 | 5283147 | 5282990 | ID=cds.MS.gene069569.t1;Parent=MS.gene069569.t1 |
| chr4.2 | exon | 5285224 | 5285272 | 5285224 | ID=MS.gene069569.t1.exon2;Parent=MS.gene069569.t1 |
| chr4.2 | CDS | 5285224 | 5285272 | 5285224 | ID=cds.MS.gene069569.t1;Parent=MS.gene069569.t1 |
| chr4.2 | exon | 5285460 | 5285537 | 5285460 | ID=MS.gene069569.t1.exon3;Parent=MS.gene069569.t1 |
| chr4.2 | CDS | 5285460 | 5285537 | 5285460 | ID=cds.MS.gene069569.t1;Parent=MS.gene069569.t1 |
| chr4.2 | exon | 5285567 | 5286028 | 5285567 | ID=MS.gene069569.t1.exon4;Parent=MS.gene069569.t1 |
| chr4.2 | CDS | 5285567 | 5286028 | 5285567 | ID=cds.MS.gene069569.t1;Parent=MS.gene069569.t1 |
| Gene Sequence |
| Protein sequence |
