Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070008.t1 | AFK36584.1 | 99.2 | 122 | 1 | 0 | 1 | 122 | 1 | 122 | 6.20E-38 | 167.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070008.t1 | P26585 | 63.6 | 121 | 43 | 1 | 1 | 121 | 1 | 120 | 3.1e-30 | 132.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070008.t1 | I3S988 | 95.1 | 122 | 6 | 0 | 1 | 122 | 1 | 122 | 4.5e-38 | 167.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene070008.t1 | TR | HMG |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene03201 | MS.gene070008 | PPI |
| MS.gene013786 | MS.gene070008 | PPI |
| MS.gene02572 | MS.gene070008 | PPI |
| MS.gene46264 | MS.gene070008 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070008.t1 | MTR_3g115580 | 98.710 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 9.43e-103 | 291 |
| MS.gene070008.t1 | MTR_8g073345 | 60.432 | 139 | 46 | 5 | 5 | 143 | 3 | 132 | 7.41e-41 | 134 |
| MS.gene070008.t1 | MTR_5g024180 | 57.895 | 133 | 48 | 4 | 5 | 137 | 3 | 127 | 1.80e-37 | 125 |
| MS.gene070008.t1 | MTR_8g073345 | 60.150 | 133 | 44 | 5 | 5 | 137 | 3 | 126 | 2.25e-37 | 125 |
| MS.gene070008.t1 | MTR_7g068280 | 70.297 | 101 | 28 | 1 | 41 | 141 | 47 | 145 | 7.42e-36 | 122 |
| MS.gene070008.t1 | MTR_7g082820 | 63.855 | 83 | 29 | 1 | 34 | 116 | 2 | 83 | 1.59e-29 | 105 |
| MS.gene070008.t1 | MTR_1g115220 | 60.000 | 80 | 32 | 0 | 41 | 120 | 98 | 177 | 7.05e-27 | 100 |
| MS.gene070008.t1 | MTR_5g024180 | 57.778 | 90 | 34 | 2 | 51 | 137 | 2 | 90 | 7.39e-24 | 89.7 |
| MS.gene070008.t1 | MTR_4g094622 | 47.674 | 86 | 45 | 0 | 35 | 120 | 54 | 139 | 5.44e-23 | 89.0 |
| MS.gene070008.t1 | MTR_1g022345 | 46.667 | 75 | 39 | 1 | 41 | 115 | 554 | 627 | 1.42e-12 | 64.7 |
| MS.gene070008.t1 | MTR_8g099305 | 35.714 | 98 | 60 | 1 | 41 | 138 | 262 | 356 | 3.77e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070008.t1 | AT1G20693 | 66.013 | 153 | 41 | 4 | 1 | 153 | 1 | 142 | 9.88e-54 | 167 |
| MS.gene070008.t1 | AT1G20693 | 65.693 | 137 | 38 | 3 | 1 | 137 | 1 | 128 | 1.46e-47 | 151 |
| MS.gene070008.t1 | AT1G20693 | 65.693 | 137 | 38 | 3 | 1 | 137 | 1 | 128 | 1.51e-47 | 151 |
| MS.gene070008.t1 | AT1G20696 | 63.504 | 137 | 38 | 3 | 1 | 137 | 1 | 125 | 8.19e-46 | 146 |
| MS.gene070008.t1 | AT2G17560 | 54.483 | 145 | 54 | 4 | 1 | 144 | 1 | 134 | 2.04e-41 | 135 |
| MS.gene070008.t1 | AT2G17560 | 52.258 | 155 | 56 | 4 | 1 | 155 | 1 | 137 | 4.95e-41 | 134 |
| MS.gene070008.t1 | AT2G17560 | 52.258 | 155 | 56 | 4 | 1 | 155 | 1 | 137 | 4.95e-41 | 134 |
| MS.gene070008.t1 | AT1G20696 | 60.800 | 125 | 39 | 2 | 1 | 125 | 1 | 115 | 8.56e-41 | 134 |
| MS.gene070008.t1 | AT1G20696 | 63.559 | 118 | 33 | 2 | 1 | 118 | 1 | 108 | 1.07e-40 | 134 |
| MS.gene070008.t1 | AT3G51880 | 65.517 | 116 | 33 | 2 | 26 | 141 | 36 | 144 | 1.49e-39 | 132 |
| MS.gene070008.t1 | AT3G51880 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.85e-39 | 132 |
| MS.gene070008.t1 | AT3G51880 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.85e-39 | 132 |
| MS.gene070008.t1 | AT3G51880 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.85e-39 | 132 |
| MS.gene070008.t1 | AT3G51880 | 69.388 | 98 | 25 | 1 | 40 | 137 | 48 | 140 | 2.41e-37 | 125 |
| MS.gene070008.t1 | AT1G20696 | 66.327 | 98 | 29 | 2 | 53 | 150 | 1 | 94 | 1.56e-33 | 114 |
| MS.gene070008.t1 | AT4G35570 | 46.667 | 120 | 53 | 1 | 1 | 120 | 1 | 109 | 2.12e-32 | 112 |
| MS.gene070008.t1 | AT4G35570 | 46.667 | 120 | 53 | 1 | 1 | 120 | 1 | 109 | 2.12e-32 | 112 |
| MS.gene070008.t1 | AT1G20696 | 64.706 | 85 | 28 | 1 | 53 | 137 | 1 | 83 | 1.80e-28 | 101 |
| MS.gene070008.t1 | AT2G34450 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.61e-19 | 79.3 |
| MS.gene070008.t1 | AT2G34450 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.61e-19 | 79.3 |
| MS.gene070008.t1 | AT2G34450 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.61e-19 | 79.3 |
| MS.gene070008.t1 | AT2G34450 | 37.000 | 100 | 47 | 2 | 45 | 143 | 63 | 147 | 6.07e-18 | 75.9 |
| MS.gene070008.t1 | AT5G23420 | 46.739 | 92 | 41 | 2 | 26 | 110 | 89 | 179 | 1.31e-15 | 71.6 |
| MS.gene070008.t1 | AT4G23800 | 45.000 | 80 | 39 | 2 | 41 | 118 | 375 | 451 | 9.97e-12 | 62.0 |
| MS.gene070008.t1 | AT4G23800 | 45.000 | 80 | 39 | 2 | 41 | 118 | 369 | 445 | 1.04e-11 | 62.0 |
Find 46 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGTCTCTTAGGCTTGTT+AGG | 0.179440 | 3.1:-91453182 | None:intergenic |
| TTTCTTGTTATATGCCTTCA+TGG | 0.203700 | 3.1:-91453863 | None:intergenic |
| TTACTTAGCATCGGCTTTCT+TGG | 0.250421 | 3.1:-91452894 | None:intergenic |
| CTTGGATTCACCCTTGGACT+TGG | 0.277403 | 3.1:-91452876 | None:intergenic |
| AAAGCACTTGGAGGTCTCTT+AGG | 0.309499 | 3.1:-91453191 | None:intergenic |
| TTAGGCTTGTTAGGGTCCTT+TGG | 0.339552 | 3.1:-91453173 | None:intergenic |
| TTTGGTTCCTTTCCCTTGGC+TGG | 0.339914 | 3.1:-91453155 | None:intergenic |
| GCAGACACAGCTTTGTTGTC+AGG | 0.342321 | 3.1:-91453569 | None:intergenic |
| GTCCTTTGGTTCCTTTCCCT+TGG | 0.359297 | 3.1:-91453159 | None:intergenic |
| GGCTGGTTTCCTTCCGCCCT+TGG | 0.371407 | 3.1:-91453138 | None:intergenic |
| GCTGTTGAGGAAGAAGAATC+TGG | 0.372128 | 3.1:+91453984 | MS.gene070008:CDS |
| TTGCAGGTGGGCAAAGCTGC+TGG | 0.380613 | 3.1:+91453668 | MS.gene070008:intron |
| GGCTTTCTTGGATTCACCCT+TGG | 0.397041 | 3.1:-91452882 | None:intergenic |
| TTTCCTTCCGCCCTTGGTAG+TGG | 0.445999 | 3.1:-91453132 | None:intergenic |
| GCAAAGCTGCTGGAGCAAAA+TGG | 0.450601 | 3.1:+91453678 | MS.gene070008:CDS |
| GAAGGCATATAACAAGAAAC+AGG | 0.452913 | 3.1:+91453867 | MS.gene070008:CDS |
| GAGGTCTCTTAGGCTTGTTA+GGG | 0.458151 | 3.1:-91453181 | None:intergenic |
| TCTTCTTCCTCAACAGCAGC+TGG | 0.462822 | 3.1:-91453978 | None:intergenic |
| GGCGGCGCCCTTCTTATTCA+CGG | 0.463220 | 3.1:-91453111 | None:intergenic |
| CAGACACAGCTTTGTTGTCA+GGG | 0.494732 | 3.1:-91453568 | None:intergenic |
| ATGCAGCAAAAGCAGAGAAA+AGG | 0.511362 | 3.1:+91453821 | MS.gene070008:CDS |
| TGAAGGTCCAGCTGCTGTTG+AGG | 0.526952 | 3.1:+91453971 | MS.gene070008:CDS |
| GAAGGGCGCCGCCACTACCA+AGG | 0.539172 | 3.1:+91453121 | MS.gene070008:CDS |
| GGGCGGAAGGAAACCAGCCA+AGG | 0.544457 | 3.1:+91453142 | MS.gene070008:CDS |
| TAGGCTTGCCGTGAATAAGA+AGG | 0.545546 | 3.1:+91453103 | MS.gene070008:intron |
| AAGGAAACCAGCCAAGGGAA+AGG | 0.549929 | 3.1:+91453148 | MS.gene070008:CDS |
| TGTGATTGTTGTCAGGCTGA+AGG | 0.555256 | 3.1:+91453954 | MS.gene070008:intron |
| GGATTGAACTTACTTAGCAT+CGG | 0.556269 | 3.1:-91452903 | None:intergenic |
| AAAACGAAGAAAGCACTTGG+AGG | 0.558317 | 3.1:-91453200 | None:intergenic |
| AGCCAAGGGAAAGGAACCAA+AGG | 0.561691 | 3.1:+91453157 | MS.gene070008:CDS |
| CTGTTGAGGAAGAAGAATCT+GGG | 0.568023 | 3.1:+91453985 | MS.gene070008:CDS |
| AAGGGCGCCGCCACTACCAA+GGG | 0.571773 | 3.1:+91453122 | MS.gene070008:CDS |
| CCGCCACTACCAAGGGCGGA+AGG | 0.572782 | 3.1:+91453129 | MS.gene070008:CDS |
| ATGAAAACGAAGAAAGCACT+TGG | 0.589018 | 3.1:-91453203 | None:intergenic |
| CATGAAAGGAGCCAAGTCCA+AGG | 0.590256 | 3.1:+91452865 | None:intergenic |
| CCTTCCGCCCTTGGTAGTGG+CGG | 0.599374 | 3.1:-91453129 | None:intergenic |
| TGAAGTGCATGATGAGAATG+AGG | 0.606285 | 3.1:+91454019 | MS.gene070008:CDS |
| GGCGCCGCCACTACCAAGGG+CGG | 0.610298 | 3.1:+91453125 | MS.gene070008:CDS |
| AGGCTTGCCGTGAATAAGAA+GGG | 0.612713 | 3.1:+91453104 | MS.gene070008:intron |
| AGAATATGAGAAAACCATGA+AGG | 0.619628 | 3.1:+91453849 | MS.gene070008:CDS |
| TGAGAATGAGGATGATGATG+AGG | 0.623282 | 3.1:+91454031 | MS.gene070008:CDS |
| AATGAGGATGATGATGAGGA+TGG | 0.627725 | 3.1:+91454035 | MS.gene070008:CDS |
| ATGAAAGGAGCCAAGTCCAA+GGG | 0.636209 | 3.1:+91452866 | MS.gene070008:CDS |
| GGCGGAAGGAAACCAGCCAA+GGG | 0.638094 | 3.1:+91453143 | MS.gene070008:CDS |
| AGCAAAAGCAGAGAAAAGGA+AGG | 0.642820 | 3.1:+91453825 | MS.gene070008:CDS |
| TGATGAGGATGGCAGTGAAG+AGG | 0.697028 | 3.1:+91454046 | MS.gene070008:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTATTCAATTATAATAAT+TGG | - | chr3.1:91453340-91453359 | None:intergenic | 10.0% |
| !! | AAGAGGAAATTATGAAAAAA+CGG | - | chr3.1:91452927-91452946 | None:intergenic | 20.0% |
| !! | GTATGTACTGTTATATTTAT+TGG | + | chr3.1:91453719-91453738 | MS.gene070008:intron | 20.0% |
| !!! | ATTGATATTGTTGATTTTGA+TGG | + | chr3.1:91453080-91453099 | MS.gene070008:intron | 20.0% |
| !!! | TTTTTATTCTGAAATTTGTG+TGG | + | chr3.1:91453503-91453522 | MS.gene070008:intron | 20.0% |
| ! | AAATTTGTGTGGTCTTTATA+GGG | + | chr3.1:91453514-91453533 | MS.gene070008:intron | 25.0% |
| ! | ATTTATTTGTGATTGTTGTC+AGG | + | chr3.1:91453947-91453966 | MS.gene070008:intron | 25.0% |
| ! | GCAAAAAATCGAGTAAATTA+GGG | + | chr3.1:91452973-91452992 | MS.gene070008:intron | 25.0% |
| ! | GTTGTAAGTAAATGCAAATT+GGG | + | chr3.1:91453907-91453926 | MS.gene070008:intron | 25.0% |
| ! | TGTTGTAAGTAAATGCAAAT+TGG | + | chr3.1:91453906-91453925 | MS.gene070008:intron | 25.0% |
| ! | TTTGTTGAATTTCACTTTGT+AGG | + | chr3.1:91454089-91454108 | MS.gene070008:intron | 25.0% |
| !! | AACTAGCATAATTTCTCTTT+TGG | + | chr3.1:91453034-91453053 | MS.gene070008:intron | 25.0% |
| !!! | ATATTGTTGATTTTGATGGT+AGG | + | chr3.1:91453084-91453103 | MS.gene070008:intron | 25.0% |
| AGAATATGAGAAAACCATGA+AGG | + | chr3.1:91453849-91453868 | MS.gene070008:CDS | 30.0% | |
| AGCGAATAAAACGATTTAAG+AGG | - | chr3.1:91452944-91452963 | None:intergenic | 30.0% | |
| ATAAAAATGTCAAAGTCCCA+CGG | - | chr3.1:91453467-91453486 | None:intergenic | 30.0% | |
| GAAATTTGTGTGGTCTTTAT+AGG | + | chr3.1:91453513-91453532 | MS.gene070008:intron | 30.0% | |
| GGCAAAAAATCGAGTAAATT+AGG | + | chr3.1:91452972-91452991 | MS.gene070008:intron | 30.0% | |
| TAAATGCAAATTGGGTAACT+AGG | + | chr3.1:91453915-91453934 | MS.gene070008:intron | 30.0% | |
| TGCTTATTACATGCGATATA+AGG | - | chr3.1:91453622-91453641 | None:intergenic | 30.0% | |
| ! | CATCTGTATATGAATTTTGC+AGG | + | chr3.1:91453652-91453671 | MS.gene070008:intron | 30.0% |
| ! | TGTATATGAATTTTGCAGGT+GGG | + | chr3.1:91453656-91453675 | MS.gene070008:intron | 30.0% |
| ! | TTTCTTGTTATATGCCTTCA+TGG | - | chr3.1:91453866-91453885 | None:intergenic | 30.0% |
| ATATGCTGTGATTGAACGTT+TGG | + | chr3.1:91453769-91453788 | MS.gene070008:intron | 35.0% | |
| CGTTCAATCACAGCATATAA+TGG | - | chr3.1:91453767-91453786 | None:intergenic | 35.0% | |
| GCATATAACAAGAAACAGGT+CGG | + | chr3.1:91453871-91453890 | MS.gene070008:intron | 35.0% | |
| GGATTGAACTTACTTAGCAT+CGG | - | chr3.1:91452906-91452925 | None:intergenic | 35.0% | |
| GTTTGGTCTCTGGATTTATT+AGG | + | chr3.1:91453786-91453805 | MS.gene070008:intron | 35.0% | |
| TAAGGCCAGTAAAACAACAA+CGG | - | chr3.1:91453604-91453623 | None:intergenic | 35.0% | |
| TTGTTCCTTATGTTTCATGC+AGG | + | chr3.1:91454138-91454157 | MS.gene070008:intron | 35.0% | |
| ! | CAGTCATAACTGTTTTCACA+CGG | - | chr3.1:91453430-91453449 | None:intergenic | 35.0% |
| ! | CTGTATATGAATTTTGCAGG+TGG | + | chr3.1:91453655-91453674 | MS.gene070008:intron | 35.0% |
| ! | GAAGGCATATAACAAGAAAC+AGG | + | chr3.1:91453867-91453886 | MS.gene070008:CDS | 35.0% |
| ! | GTCTTTATAGGGAGGATTTT+AGG | + | chr3.1:91453525-91453544 | MS.gene070008:intron | 35.0% |
| !! | ATGAAAACGAAGAAAGCACT+TGG | - | chr3.1:91453206-91453225 | None:intergenic | 35.0% |
| !! | CGTTTTATTCGCTTTCGATT+TGG | + | chr3.1:91452951-91452970 | MS.gene070008:intron | 35.0% |
| !! | TTTTAGGAAGCAGTTCAAGA+AGG | + | chr3.1:91453541-91453560 | MS.gene070008:CDS | 35.0% |
| !!! | AGTATCCGTTGTTGTTTTAC+TGG | + | chr3.1:91453596-91453615 | MS.gene070008:intron | 35.0% |
| AGCAAAAGCAGAGAAAAGGA+AGG | + | chr3.1:91453825-91453844 | MS.gene070008:CDS | 40.0% | |
| ATGCAGCAAAAGCAGAGAAA+AGG | + | chr3.1:91453821-91453840 | MS.gene070008:CDS | 40.0% | |
| CTGTTGAGGAAGAAGAATCT+GGG | + | chr3.1:91453985-91454004 | MS.gene070008:CDS | 40.0% | |
| TGAAGTGCATGATGAGAATG+AGG | + | chr3.1:91454019-91454038 | MS.gene070008:CDS | 40.0% | |
| TTCCTTATGTTTCATGCAGG+AGG | + | chr3.1:91454141-91454160 | MS.gene070008:intron | 40.0% | |
| TTTGTGTGGTCTTTATAGGG+AGG | + | chr3.1:91453517-91453536 | MS.gene070008:intron | 40.0% | |
| ! | AATGAGGATGATGATGAGGA+TGG | + | chr3.1:91454035-91454054 | MS.gene070008:CDS | 40.0% |
| ! | CGATTTTCAGATCTCAGATC+TGG | - | chr3.1:91453010-91453029 | None:intergenic | 40.0% |
| ! | GTTTTCACACGGTATAAGAC+AGG | - | chr3.1:91453419-91453438 | None:intergenic | 40.0% |
| ! | TGAGAATGAGGATGATGATG+AGG | + | chr3.1:91454031-91454050 | MS.gene070008:CDS | 40.0% |
| !! | AAAACGAAGAAAGCACTTGG+AGG | - | chr3.1:91453203-91453222 | None:intergenic | 40.0% |
| !! | TTACTTAGCATCGGCTTTCT+TGG | - | chr3.1:91452897-91452916 | None:intergenic | 40.0% |
| !! | TTCTCTGCTTTTGCTGCATA+TGG | - | chr3.1:91453820-91453839 | None:intergenic | 40.0% |
| AGGCTTGCCGTGAATAAGAA+GGG | + | chr3.1:91453104-91453123 | MS.gene070008:intron | 45.0% | |
| ATGAAAGGAGCCAAGTCCAA+GGG | + | chr3.1:91452866-91452885 | MS.gene070008:CDS | 45.0% | |
| CTCCTCCTGCATGAAACATA+AGG | - | chr3.1:91454146-91454165 | None:intergenic | 45.0% | |
| CTTATGTTTCATGCAGGAGG+AGG | + | chr3.1:91454144-91454163 | MS.gene070008:intron | 45.0% | |
| GCTGTTGAGGAAGAAGAATC+TGG | + | chr3.1:91453984-91454003 | MS.gene070008:CDS | 45.0% | |
| GTGATTGAACGTTTGGTCTC+TGG | + | chr3.1:91453776-91453795 | MS.gene070008:intron | 45.0% | |
| TAGGCTTGCCGTGAATAAGA+AGG | + | chr3.1:91453103-91453122 | MS.gene070008:intron | 45.0% | |
| TGCTGAGTTATGATGACCGT+GGG | + | chr3.1:91453448-91453467 | MS.gene070008:intron | 45.0% | |
| TGTGATTGTTGTCAGGCTGA+AGG | + | chr3.1:91453954-91453973 | MS.gene070008:intron | 45.0% | |
| ! | AAAGCACTTGGAGGTCTCTT+AGG | - | chr3.1:91453194-91453213 | None:intergenic | 45.0% |
| !! | CAGACACAGCTTTGTTGTCA+GGG | - | chr3.1:91453571-91453590 | None:intergenic | 45.0% |
| !! | GAGGTCTCTTAGGCTTGTTA+GGG | - | chr3.1:91453184-91453203 | None:intergenic | 45.0% |
| !! | TTAGGCTTGTTAGGGTCCTT+TGG | - | chr3.1:91453176-91453195 | None:intergenic | 45.0% |
| AAGGAAACCAGCCAAGGGAA+AGG | + | chr3.1:91453148-91453167 | MS.gene070008:CDS | 50.0% | |
| AGCCAAGGGAAAGGAACCAA+AGG | + | chr3.1:91453157-91453176 | MS.gene070008:CDS | 50.0% | |
| CTGCTGAGTTATGATGACCG+TGG | + | chr3.1:91453447-91453466 | MS.gene070008:intron | 50.0% | |
| CTTGGATTCACCCTTGGACT+TGG | - | chr3.1:91452879-91452898 | None:intergenic | 50.0% | |
| GCAAAGCTGCTGGAGCAAAA+TGG | + | chr3.1:91453678-91453697 | MS.gene070008:CDS | 50.0% | |
| GGCTTTCTTGGATTCACCCT+TGG | - | chr3.1:91452885-91452904 | None:intergenic | 50.0% | |
| TCTTCTTCCTCAACAGCAGC+TGG | - | chr3.1:91453981-91454000 | None:intergenic | 50.0% | |
| TGATGAGGATGGCAGTGAAG+AGG | + | chr3.1:91454046-91454065 | MS.gene070008:CDS | 50.0% | |
| ! | GGAGGTCTCTTAGGCTTGTT+AGG | - | chr3.1:91453185-91453204 | None:intergenic | 50.0% |
| ! | GTCCTTTGGTTCCTTTCCCT+TGG | - | chr3.1:91453162-91453181 | None:intergenic | 50.0% |
| ! | TTTGGTTCCTTTCCCTTGGC+TGG | - | chr3.1:91453158-91453177 | None:intergenic | 50.0% |
| !! | GCAGACACAGCTTTGTTGTC+AGG | - | chr3.1:91453572-91453591 | None:intergenic | 50.0% |
| TGAAGGTCCAGCTGCTGTTG+AGG | + | chr3.1:91453971-91453990 | MS.gene070008:CDS | 55.0% | |
| TTTCCTTCCGCCCTTGGTAG+TGG | - | chr3.1:91453135-91453154 | None:intergenic | 55.0% | |
| GGCGGAAGGAAACCAGCCAA+GGG | + | chr3.1:91453143-91453162 | MS.gene070008:CDS | 60.0% | |
| GGCGGCGCCCTTCTTATTCA+CGG | - | chr3.1:91453114-91453133 | None:intergenic | 60.0% | |
| TTGCAGGTGGGCAAAGCTGC+TGG | + | chr3.1:91453668-91453687 | MS.gene070008:intron | 60.0% | |
| GGGCGGAAGGAAACCAGCCA+AGG | + | chr3.1:91453142-91453161 | MS.gene070008:CDS | 65.0% | |
| !! | AAGGGCGCCGCCACTACCAA+GGG | + | chr3.1:91453122-91453141 | MS.gene070008:CDS | 65.0% |
| !! | CCTTCCGCCCTTGGTAGTGG+CGG | - | chr3.1:91453132-91453151 | None:intergenic | 65.0% |
| !! | GGCTGGTTTCCTTCCGCCCT+TGG | - | chr3.1:91453141-91453160 | None:intergenic | 65.0% |
| CCGCCACTACCAAGGGCGGA+AGG | + | chr3.1:91453129-91453148 | MS.gene070008:CDS | 70.0% | |
| !! | GAAGGGCGCCGCCACTACCA+AGG | + | chr3.1:91453121-91453140 | MS.gene070008:CDS | 70.0% |
| GGCGCCGCCACTACCAAGGG+CGG | + | chr3.1:91453125-91453144 | MS.gene070008:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 91452866 | 91454177 | 91452866 | ID=MS.gene070008 |
| chr3.1 | mRNA | 91452866 | 91454177 | 91452866 | ID=MS.gene070008.t1;Parent=MS.gene070008 |
| chr3.1 | exon | 91452866 | 91452912 | 91452866 | ID=MS.gene070008.t1.exon1;Parent=MS.gene070008.t1 |
| chr3.1 | CDS | 91452866 | 91452912 | 91452866 | ID=cds.MS.gene070008.t1;Parent=MS.gene070008.t1 |
| chr3.1 | exon | 91453106 | 91453225 | 91453106 | ID=MS.gene070008.t1.exon2;Parent=MS.gene070008.t1 |
| chr3.1 | CDS | 91453106 | 91453225 | 91453106 | ID=cds.MS.gene070008.t1;Parent=MS.gene070008.t1 |
| chr3.1 | exon | 91453535 | 91453592 | 91453535 | ID=MS.gene070008.t1.exon3;Parent=MS.gene070008.t1 |
| chr3.1 | CDS | 91453535 | 91453592 | 91453535 | ID=cds.MS.gene070008.t1;Parent=MS.gene070008.t1 |
| chr3.1 | exon | 91453674 | 91453718 | 91453674 | ID=MS.gene070008.t1.exon4;Parent=MS.gene070008.t1 |
| chr3.1 | CDS | 91453674 | 91453718 | 91453674 | ID=cds.MS.gene070008.t1;Parent=MS.gene070008.t1 |
| chr3.1 | exon | 91453808 | 91453888 | 91453808 | ID=MS.gene070008.t1.exon5;Parent=MS.gene070008.t1 |
| chr3.1 | CDS | 91453808 | 91453888 | 91453808 | ID=cds.MS.gene070008.t1;Parent=MS.gene070008.t1 |
| chr3.1 | exon | 91453969 | 91454067 | 91453969 | ID=MS.gene070008.t1.exon6;Parent=MS.gene070008.t1 |
| chr3.1 | CDS | 91453969 | 91454067 | 91453969 | ID=cds.MS.gene070008.t1;Parent=MS.gene070008.t1 |
| chr3.1 | exon | 91454160 | 91454177 | 91454160 | ID=MS.gene070008.t1.exon7;Parent=MS.gene070008.t1 |
| chr3.1 | CDS | 91454160 | 91454177 | 91454160 | ID=cds.MS.gene070008.t1;Parent=MS.gene070008.t1 |
| Gene Sequence |
| Protein sequence |
