Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07059.t1 | XP_003625972.1 | 97.6 | 124 | 3 | 0 | 1 | 124 | 197 | 320 | 1.80E-65 | 258.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07059.t1 | Q9LZQ1 | 78.2 | 124 | 27 | 0 | 1 | 124 | 198 | 321 | 8.3e-56 | 217.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07059.t1 | G7KST9 | 97.6 | 124 | 3 | 0 | 1 | 124 | 197 | 320 | 1.3e-65 | 258.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053171 | MS.gene07059 | 0.800849 | 1.19E-48 | -1.69E-46 |
| MS.gene054554 | MS.gene07059 | 0.813811 | 2.12E-51 | -1.69E-46 |
| MS.gene058720 | MS.gene07059 | 0.805063 | 1.60E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07059.t1 | MTR_7g109550 | 97.581 | 124 | 3 | 0 | 1 | 124 | 197 | 320 | 1.65e-86 | 260 |
| MS.gene07059.t1 | MTR_7g094750 | 57.377 | 122 | 50 | 1 | 1 | 120 | 151 | 272 | 4.68e-41 | 139 |
| MS.gene07059.t1 | MTR_2g022580 | 50.400 | 125 | 60 | 1 | 1 | 123 | 2 | 126 | 2.08e-40 | 131 |
| MS.gene07059.t1 | MTR_7g094750 | 57.377 | 122 | 50 | 1 | 1 | 120 | 151 | 272 | 3.13e-40 | 139 |
| MS.gene07059.t1 | MTR_5g033800 | 50.407 | 123 | 61 | 0 | 1 | 123 | 205 | 327 | 2.95e-39 | 135 |
| MS.gene07059.t1 | MTR_7g093450 | 52.800 | 125 | 56 | 2 | 1 | 123 | 308 | 431 | 4.54e-39 | 138 |
| MS.gene07059.t1 | MTR_8g069790 | 50.407 | 123 | 61 | 0 | 1 | 123 | 238 | 360 | 6.29e-39 | 137 |
| MS.gene07059.t1 | MTR_2g022560 | 51.639 | 122 | 57 | 1 | 1 | 120 | 157 | 278 | 1.93e-38 | 135 |
| MS.gene07059.t1 | MTR_5g033800 | 50.407 | 123 | 61 | 0 | 1 | 123 | 205 | 327 | 2.86e-38 | 135 |
| MS.gene07059.t1 | MTR_0136s0010 | 51.613 | 124 | 59 | 1 | 1 | 123 | 230 | 353 | 3.53e-38 | 135 |
| MS.gene07059.t1 | MTR_5g059400 | 47.200 | 125 | 63 | 2 | 1 | 123 | 235 | 358 | 7.01e-38 | 134 |
| MS.gene07059.t1 | MTR_1g116130 | 47.200 | 125 | 63 | 2 | 1 | 123 | 235 | 358 | 7.01e-38 | 134 |
| MS.gene07059.t1 | MTR_4g126950 | 50.400 | 125 | 61 | 1 | 1 | 124 | 169 | 293 | 2.14e-36 | 129 |
| MS.gene07059.t1 | MTR_4g121560 | 48.000 | 125 | 63 | 1 | 1 | 123 | 175 | 299 | 3.87e-36 | 129 |
| MS.gene07059.t1 | MTR_3g090120 | 46.281 | 121 | 63 | 2 | 1 | 119 | 193 | 313 | 1.26e-30 | 114 |
| MS.gene07059.t1 | MTR_8g093530 | 45.455 | 121 | 64 | 1 | 1 | 119 | 150 | 270 | 1.09e-29 | 111 |
| MS.gene07059.t1 | MTR_1g058380 | 41.732 | 127 | 71 | 2 | 1 | 124 | 117 | 243 | 1.93e-28 | 107 |
| MS.gene07059.t1 | MTR_3g464570 | 36.719 | 128 | 70 | 4 | 5 | 132 | 3 | 119 | 2.76e-23 | 91.7 |
| MS.gene07059.t1 | MTR_3g464570 | 38.655 | 119 | 62 | 4 | 5 | 123 | 107 | 214 | 1.19e-22 | 91.7 |
| MS.gene07059.t1 | MTR_5g071350 | 36.975 | 119 | 64 | 4 | 5 | 123 | 122 | 229 | 6.61e-21 | 87.0 |
| MS.gene07059.t1 | MTR_3g070900 | 41.935 | 124 | 59 | 4 | 1 | 120 | 167 | 281 | 8.00e-21 | 87.0 |
| MS.gene07059.t1 | MTR_1g112210 | 34.513 | 113 | 64 | 2 | 5 | 117 | 122 | 224 | 6.05e-20 | 84.3 |
| MS.gene07059.t1 | MTR_4g016940 | 35.345 | 116 | 66 | 2 | 2 | 115 | 148 | 256 | 1.08e-19 | 83.6 |
| MS.gene07059.t1 | MTR_2g015720 | 35.938 | 128 | 70 | 3 | 6 | 133 | 106 | 221 | 5.42e-19 | 81.3 |
| MS.gene07059.t1 | MTR_4g014440 | 37.288 | 118 | 65 | 3 | 1 | 115 | 123 | 234 | 2.16e-18 | 80.1 |
| MS.gene07059.t1 | MTR_1g050448 | 35.088 | 114 | 62 | 3 | 5 | 117 | 116 | 218 | 2.44e-18 | 79.7 |
| MS.gene07059.t1 | MTR_2g073510 | 40.000 | 115 | 55 | 5 | 2 | 115 | 95 | 196 | 1.63e-17 | 77.4 |
| MS.gene07059.t1 | MTR_5g082880 | 41.803 | 122 | 55 | 5 | 1 | 115 | 226 | 338 | 1.83e-17 | 77.8 |
| MS.gene07059.t1 | MTR_7g070060 | 38.462 | 117 | 65 | 3 | 1 | 115 | 125 | 236 | 2.37e-17 | 76.6 |
| MS.gene07059.t1 | MTR_5g034810 | 34.711 | 121 | 67 | 3 | 1 | 121 | 93 | 201 | 3.26e-17 | 76.6 |
| MS.gene07059.t1 | MTR_7g070060 | 38.462 | 117 | 65 | 3 | 1 | 115 | 23 | 134 | 3.32e-17 | 75.9 |
| MS.gene07059.t1 | MTR_2g073500 | 33.333 | 120 | 62 | 4 | 2 | 117 | 96 | 201 | 3.71e-17 | 76.3 |
| MS.gene07059.t1 | MTR_3g021060 | 35.338 | 133 | 72 | 6 | 2 | 133 | 107 | 226 | 4.00e-17 | 76.3 |
| MS.gene07059.t1 | MTR_7g070060 | 38.462 | 117 | 65 | 3 | 1 | 115 | 125 | 236 | 4.87e-17 | 76.3 |
| MS.gene07059.t1 | MTR_2g091175 | 37.815 | 119 | 59 | 5 | 2 | 117 | 108 | 214 | 6.16e-17 | 75.9 |
| MS.gene07059.t1 | MTR_1g112210 | 34.513 | 113 | 51 | 3 | 5 | 117 | 122 | 211 | 6.57e-17 | 75.9 |
| MS.gene07059.t1 | MTR_4g014430 | 37.398 | 123 | 68 | 2 | 1 | 121 | 169 | 284 | 8.04e-17 | 75.9 |
| MS.gene07059.t1 | MTR_7g068920 | 33.051 | 118 | 66 | 3 | 2 | 115 | 142 | 250 | 2.97e-16 | 73.9 |
| MS.gene07059.t1 | MTR_3g071650 | 38.136 | 118 | 62 | 3 | 1 | 115 | 150 | 259 | 3.00e-16 | 73.9 |
| MS.gene07059.t1 | MTR_4g079700 | 34.783 | 115 | 57 | 4 | 6 | 117 | 112 | 211 | 1.46e-15 | 72.0 |
| MS.gene07059.t1 | MTR_5g083260 | 35.043 | 117 | 67 | 2 | 1 | 115 | 144 | 253 | 1.78e-15 | 72.0 |
| MS.gene07059.t1 | MTR_8g463790 | 32.520 | 123 | 66 | 4 | 1 | 117 | 132 | 243 | 2.34e-15 | 71.6 |
| MS.gene07059.t1 | MTR_4g087730 | 31.356 | 118 | 69 | 3 | 6 | 123 | 110 | 215 | 2.43e-15 | 71.2 |
| MS.gene07059.t1 | MTR_1g111010 | 36.441 | 118 | 62 | 6 | 1 | 117 | 94 | 199 | 5.79e-15 | 70.1 |
| MS.gene07059.t1 | MTR_3g021090 | 33.333 | 114 | 64 | 3 | 2 | 115 | 92 | 193 | 1.25e-14 | 69.3 |
| MS.gene07059.t1 | MTR_5g069320 | 32.500 | 120 | 53 | 4 | 5 | 123 | 165 | 257 | 3.42e-14 | 68.2 |
| MS.gene07059.t1 | MTR_3g035830 | 32.727 | 110 | 62 | 3 | 6 | 115 | 96 | 193 | 5.06e-14 | 67.4 |
| MS.gene07059.t1 | MTR_3g049330 | 34.959 | 123 | 66 | 5 | 6 | 127 | 96 | 205 | 1.85e-13 | 65.9 |
| MS.gene07059.t1 | MTR_4g088030 | 34.821 | 112 | 61 | 5 | 6 | 117 | 98 | 197 | 1.35e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07059.t1 | AT3G62390 | 78.226 | 124 | 27 | 0 | 1 | 124 | 198 | 321 | 6.93e-71 | 218 |
| MS.gene07059.t1 | AT3G62390 | 78.226 | 124 | 27 | 0 | 1 | 124 | 198 | 321 | 7.22e-70 | 217 |
| MS.gene07059.t1 | AT5G06700 | 53.600 | 125 | 55 | 2 | 1 | 123 | 315 | 438 | 3.19e-42 | 147 |
| MS.gene07059.t1 | AT5G19160 | 55.200 | 125 | 54 | 1 | 1 | 123 | 159 | 283 | 3.43e-42 | 142 |
| MS.gene07059.t1 | AT3G06080 | 55.738 | 122 | 52 | 1 | 1 | 120 | 163 | 284 | 1.22e-41 | 141 |
| MS.gene07059.t1 | AT5G19160 | 55.200 | 125 | 54 | 1 | 1 | 123 | 159 | 283 | 3.00e-41 | 142 |
| MS.gene07059.t1 | AT1G60790 | 55.645 | 124 | 54 | 1 | 1 | 123 | 252 | 375 | 6.24e-41 | 142 |
| MS.gene07059.t1 | AT3G06080 | 55.738 | 122 | 52 | 1 | 1 | 120 | 163 | 284 | 6.44e-41 | 141 |
| MS.gene07059.t1 | AT3G12060 | 53.600 | 125 | 55 | 2 | 1 | 123 | 256 | 379 | 2.85e-40 | 141 |
| MS.gene07059.t1 | AT5G20590 | 55.000 | 120 | 53 | 1 | 5 | 123 | 206 | 325 | 1.74e-39 | 136 |
| MS.gene07059.t1 | AT5G20590 | 55.000 | 120 | 53 | 1 | 5 | 123 | 206 | 325 | 8.45e-39 | 136 |
| MS.gene07059.t1 | AT5G49340 | 47.619 | 126 | 63 | 3 | 1 | 123 | 160 | 285 | 1.42e-33 | 122 |
| MS.gene07059.t1 | AT5G06230 | 45.902 | 122 | 64 | 1 | 1 | 120 | 128 | 249 | 2.46e-31 | 113 |
| MS.gene07059.t1 | AT5G06230 | 45.902 | 122 | 64 | 1 | 1 | 120 | 87 | 208 | 5.36e-31 | 114 |
| MS.gene07059.t1 | AT5G06230 | 45.902 | 122 | 64 | 1 | 1 | 120 | 128 | 249 | 1.06e-30 | 113 |
| MS.gene07059.t1 | AT3G11570 | 45.902 | 122 | 64 | 1 | 1 | 120 | 142 | 263 | 6.51e-30 | 111 |
| MS.gene07059.t1 | AT1G48880 | 43.802 | 121 | 66 | 1 | 1 | 119 | 175 | 295 | 4.57e-29 | 109 |
| MS.gene07059.t1 | AT5G58600 | 37.398 | 123 | 66 | 4 | 5 | 127 | 131 | 242 | 1.12e-23 | 93.2 |
| MS.gene07059.t1 | AT5G58600 | 37.398 | 123 | 66 | 4 | 5 | 127 | 131 | 242 | 3.34e-23 | 93.2 |
| MS.gene07059.t1 | AT3G54260 | 37.391 | 115 | 62 | 2 | 5 | 119 | 114 | 218 | 8.43e-22 | 89.4 |
| MS.gene07059.t1 | AT2G40160 | 38.400 | 125 | 63 | 4 | 1 | 120 | 138 | 253 | 1.97e-21 | 87.4 |
| MS.gene07059.t1 | AT3G55990 | 43.697 | 119 | 54 | 4 | 1 | 115 | 201 | 310 | 2.22e-21 | 88.6 |
| MS.gene07059.t1 | AT2G38320 | 36.029 | 136 | 75 | 4 | 1 | 133 | 37 | 163 | 2.88e-21 | 87.4 |
| MS.gene07059.t1 | AT2G40160 | 38.400 | 125 | 63 | 4 | 1 | 120 | 138 | 253 | 5.74e-21 | 87.4 |
| MS.gene07059.t1 | AT2G40150 | 42.017 | 119 | 56 | 4 | 1 | 115 | 132 | 241 | 6.32e-21 | 87.4 |
| MS.gene07059.t1 | AT2G38320 | 37.288 | 118 | 65 | 3 | 1 | 115 | 120 | 231 | 6.78e-21 | 87.0 |
| MS.gene07059.t1 | AT2G30010 | 37.903 | 124 | 65 | 3 | 1 | 123 | 118 | 230 | 1.08e-20 | 86.3 |
| MS.gene07059.t1 | AT2G30010 | 39.316 | 117 | 59 | 3 | 2 | 117 | 162 | 267 | 1.28e-20 | 86.7 |
| MS.gene07059.t1 | AT2G40160 | 38.400 | 125 | 63 | 4 | 1 | 120 | 138 | 253 | 2.24e-20 | 85.9 |
| MS.gene07059.t1 | AT1G29050 | 37.288 | 118 | 63 | 2 | 6 | 123 | 126 | 232 | 4.02e-20 | 84.7 |
| MS.gene07059.t1 | AT2G34070 | 37.607 | 117 | 62 | 2 | 6 | 122 | 130 | 235 | 1.20e-19 | 83.6 |
| MS.gene07059.t1 | AT2G42570 | 35.398 | 113 | 61 | 3 | 5 | 117 | 111 | 211 | 1.05e-18 | 80.9 |
| MS.gene07059.t1 | AT5G01360 | 35.088 | 114 | 63 | 3 | 5 | 115 | 101 | 206 | 2.28e-18 | 79.7 |
| MS.gene07059.t1 | AT5G01360 | 35.088 | 114 | 63 | 3 | 5 | 115 | 157 | 262 | 2.51e-18 | 80.1 |
| MS.gene07059.t1 | AT5G01620 | 39.516 | 124 | 64 | 3 | 1 | 121 | 172 | 287 | 4.91e-18 | 79.3 |
| MS.gene07059.t1 | AT5G01620 | 39.516 | 124 | 64 | 3 | 1 | 121 | 172 | 287 | 4.91e-18 | 79.3 |
| MS.gene07059.t1 | AT5G01620 | 39.516 | 124 | 64 | 3 | 1 | 121 | 180 | 295 | 5.61e-18 | 79.0 |
| MS.gene07059.t1 | AT3G11030 | 35.897 | 117 | 66 | 2 | 1 | 115 | 167 | 276 | 2.12e-17 | 77.4 |
| MS.gene07059.t1 | AT2G34070 | 35.714 | 112 | 61 | 2 | 11 | 122 | 1 | 101 | 2.29e-17 | 75.9 |
| MS.gene07059.t1 | AT2G30900 | 36.441 | 118 | 64 | 4 | 4 | 121 | 107 | 213 | 2.69e-17 | 75.9 |
| MS.gene07059.t1 | AT1G78710 | 34.483 | 116 | 65 | 3 | 2 | 117 | 91 | 195 | 4.98e-17 | 75.5 |
| MS.gene07059.t1 | AT2G30900 | 36.441 | 118 | 64 | 4 | 4 | 121 | 107 | 213 | 8.79e-17 | 75.5 |
| MS.gene07059.t1 | AT1G78710 | 34.188 | 117 | 66 | 3 | 1 | 117 | 97 | 202 | 1.07e-16 | 75.1 |
| MS.gene07059.t1 | AT1G73140 | 33.065 | 124 | 66 | 4 | 1 | 118 | 128 | 240 | 1.12e-16 | 75.1 |
| MS.gene07059.t1 | AT2G31110 | 33.628 | 113 | 63 | 4 | 5 | 117 | 109 | 209 | 1.82e-15 | 70.9 |
| MS.gene07059.t1 | AT2G31110 | 33.628 | 113 | 63 | 4 | 5 | 117 | 109 | 209 | 3.94e-15 | 70.9 |
| MS.gene07059.t1 | AT2G40320 | 32.479 | 117 | 70 | 2 | 1 | 115 | 142 | 251 | 5.12e-15 | 70.5 |
| MS.gene07059.t1 | AT3G14850 | 31.111 | 135 | 78 | 5 | 2 | 133 | 92 | 214 | 9.41e-15 | 69.7 |
| MS.gene07059.t1 | AT3G14850 | 30.894 | 123 | 73 | 4 | 11 | 133 | 1 | 111 | 1.20e-12 | 63.2 |
| MS.gene07059.t1 | AT1G70230 | 38.333 | 120 | 60 | 6 | 2 | 117 | 140 | 249 | 6.13e-11 | 58.9 |
Find 26 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTATAGTTTCAGGTTTC+TGG | 0.139405 | 7.2:+5749462 | MS.gene07059:CDS |
| TTCCCATTGGTTCCTATTAA+TGG | 0.150183 | 7.2:-5749353 | None:intergenic |
| ATGGAGAGGAGCTGATATTT+TGG | 0.261754 | 7.2:+5749701 | MS.gene07059:CDS |
| AGAGAGGGAACTATAGTTTC+AGG | 0.285584 | 7.2:+5749455 | MS.gene07059:CDS |
| TTGTGGGTGATTCCATTAAT+AGG | 0.313259 | 7.2:+5749341 | MS.gene07059:CDS |
| TGGAGTTTATAAGAGGAAAA+AGG | 0.315433 | 7.2:+5749311 | MS.gene07059:CDS |
| ACTATAGTTCCCTCTCTCTT+TGG | 0.323759 | 7.2:-5749449 | None:intergenic |
| CGTGCCTCATACACTCTCTT+TGG | 0.387282 | 7.2:-5749412 | None:intergenic |
| CGAATTGATGCGATTGATCA+TGG | 0.420809 | 7.2:+5749669 | MS.gene07059:CDS |
| GAGAAGTGCTAACCCAGCTT+TGG | 0.426335 | 7.2:-5749760 | None:intergenic |
| AAAATGTTGGAGTTTATAAG+AGG | 0.432567 | 7.2:+5749304 | None:intergenic |
| ATCGCATCAATTCGCAAAGT+TGG | 0.456158 | 7.2:-5749660 | None:intergenic |
| AGGAAAATTACCAAAGAGAG+AGG | 0.476594 | 7.2:+5749439 | MS.gene07059:CDS |
| TCACATCACAAAACCAAAGC+TGG | 0.490317 | 7.2:+5749747 | MS.gene07059:CDS |
| TTGATCATGGTTCGTCAAGA+TGG | 0.494455 | 7.2:+5749682 | MS.gene07059:CDS |
| ATTCCATTAATAGGAACCAA+TGG | 0.514445 | 7.2:+5749350 | MS.gene07059:CDS |
| TGCACAACATTGATTCCCAT+TGG | 0.516029 | 7.2:-5749366 | None:intergenic |
| CATGAAAGCAAAGCAAGAGT+AGG | 0.524542 | 7.2:+5749624 | MS.gene07059:CDS |
| AGATCCAAAGAGAGTGTATG+AGG | 0.528363 | 7.2:+5749408 | MS.gene07059:CDS |
| TTCCATTAATAGGAACCAAT+GGG | 0.535430 | 7.2:+5749351 | MS.gene07059:CDS |
| ATGAAAGCAAAGCAAGAGTA+GGG | 0.551438 | 7.2:+5749625 | MS.gene07059:CDS |
| CACATCACAAAACCAAAGCT+GGG | 0.583781 | 7.2:+5749748 | MS.gene07059:CDS |
| GAGTGTATGAGGCACGTGGA+AGG | 0.601700 | 7.2:+5749419 | MS.gene07059:CDS |
| CATGGTTCGTCAAGATGGAG+AGG | 0.632218 | 7.2:+5749687 | MS.gene07059:CDS |
| GGAAAATTACCAAAGAGAGA+GGG | 0.638676 | 7.2:+5749440 | MS.gene07059:CDS |
| AAGAGAGTGTATGAGGCACG+TGG | 0.685399 | 7.2:+5749415 | MS.gene07059:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAACAAATATCAAATATTT+TGG | - | chr7.2:5749543-5749562 | None:intergenic | 15.0% |
| !!! | GAACAAATATCAAATATTTT+GGG | - | chr7.2:5749542-5749561 | None:intergenic | 15.0% |
| !! | AATGTATAATTGTATATGAC+TGG | + | chr7.2:5749515-5749534 | MS.gene07059:intron | 20.0% |
| !! | TAATTATTCAGAACTTTACT+TGG | + | chr7.2:5749485-5749504 | MS.gene07059:intron | 20.0% |
| ATTCCATTAATAGGAACCAA+TGG | + | chr7.2:5749350-5749369 | MS.gene07059:CDS | 30.0% | |
| TGGAGTTTATAAGAGGAAAA+AGG | + | chr7.2:5749311-5749330 | MS.gene07059:CDS | 30.0% | |
| TTCCATTAATAGGAACCAAT+GGG | + | chr7.2:5749351-5749370 | MS.gene07059:CDS | 30.0% | |
| AGGAAAATTACCAAAGAGAG+AGG | + | chr7.2:5749439-5749458 | MS.gene07059:CDS | 35.0% | |
| ATGAAAGCAAAGCAAGAGTA+GGG | + | chr7.2:5749625-5749644 | MS.gene07059:CDS | 35.0% | |
| GGAAAATTACCAAAGAGAGA+GGG | + | chr7.2:5749440-5749459 | MS.gene07059:CDS | 35.0% | |
| TGTTCTTTCTGCAACTTTGT+AGG | + | chr7.2:5749557-5749576 | MS.gene07059:intron | 35.0% | |
| TTGTGGGTGATTCCATTAAT+AGG | + | chr7.2:5749341-5749360 | MS.gene07059:CDS | 35.0% | |
| !! | GAACTATAGTTTCAGGTTTC+TGG | + | chr7.2:5749462-5749481 | MS.gene07059:CDS | 35.0% |
| !! | TTCCCATTGGTTCCTATTAA+TGG | - | chr7.2:5749356-5749375 | None:intergenic | 35.0% |
| !!! | AGGAAAAAGGCTAGTTTTTG+TGG | + | chr7.2:5749324-5749343 | MS.gene07059:CDS | 35.0% |
| !!! | GGAAAAAGGCTAGTTTTTGT+GGG | + | chr7.2:5749325-5749344 | MS.gene07059:CDS | 35.0% |
| ACTATAGTTCCCTCTCTCTT+TGG | - | chr7.2:5749452-5749471 | None:intergenic | 40.0% | |
| AGAGAGGGAACTATAGTTTC+AGG | + | chr7.2:5749455-5749474 | MS.gene07059:CDS | 40.0% | |
| ATCGCATCAATTCGCAAAGT+TGG | - | chr7.2:5749663-5749682 | None:intergenic | 40.0% | |
| CACATCACAAAACCAAAGCT+GGG | + | chr7.2:5749748-5749767 | MS.gene07059:CDS | 40.0% | |
| CATGAAAGCAAAGCAAGAGT+AGG | + | chr7.2:5749624-5749643 | MS.gene07059:CDS | 40.0% | |
| CGAATTGATGCGATTGATCA+TGG | + | chr7.2:5749669-5749688 | MS.gene07059:CDS | 40.0% | |
| TCACATCACAAAACCAAAGC+TGG | + | chr7.2:5749747-5749766 | MS.gene07059:CDS | 40.0% | |
| TTGATCATGGTTCGTCAAGA+TGG | + | chr7.2:5749682-5749701 | MS.gene07059:CDS | 40.0% | |
| ! | AGATCCAAAGAGAGTGTATG+AGG | + | chr7.2:5749408-5749427 | MS.gene07059:CDS | 40.0% |
| ! | ATGGAGAGGAGCTGATATTT+TGG | + | chr7.2:5749701-5749720 | MS.gene07059:CDS | 40.0% |
| ! | TGGTTTTCAACACAGCACAT+TGG | + | chr7.2:5749721-5749740 | MS.gene07059:CDS | 40.0% |
| ! | TTTTCAACACAGCACATTGG+TGG | + | chr7.2:5749724-5749743 | MS.gene07059:CDS | 40.0% |
| !! | TGCACAACATTGATTCCCAT+TGG | - | chr7.2:5749369-5749388 | None:intergenic | 40.0% |
| CATGGTTCGTCAAGATGGAG+AGG | + | chr7.2:5749687-5749706 | MS.gene07059:CDS | 50.0% | |
| CGTGCCTCATACACTCTCTT+TGG | - | chr7.2:5749415-5749434 | None:intergenic | 50.0% | |
| ! | AAGAGAGTGTATGAGGCACG+TGG | + | chr7.2:5749415-5749434 | MS.gene07059:CDS | 50.0% |
| !! | GAGAAGTGCTAACCCAGCTT+TGG | - | chr7.2:5749763-5749782 | None:intergenic | 50.0% |
| GAGTGTATGAGGCACGTGGA+AGG | + | chr7.2:5749419-5749438 | MS.gene07059:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 5749307 | 5749803 | 5749307 | ID=MS.gene07059 |
| chr7.2 | mRNA | 5749307 | 5749803 | 5749307 | ID=MS.gene07059.t1;Parent=MS.gene07059 |
| chr7.2 | exon | 5749307 | 5749483 | 5749307 | ID=MS.gene07059.t1.exon1;Parent=MS.gene07059.t1 |
| chr7.2 | CDS | 5749307 | 5749483 | 5749307 | ID=cds.MS.gene07059.t1;Parent=MS.gene07059.t1 |
| chr7.2 | exon | 5749579 | 5749803 | 5749579 | ID=MS.gene07059.t1.exon2;Parent=MS.gene07059.t1 |
| chr7.2 | CDS | 5749579 | 5749803 | 5749579 | ID=cds.MS.gene07059.t1;Parent=MS.gene07059.t1 |
| Gene Sequence |
| Protein sequence |
