Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070857.t1 | XP_013451612.1 | 97.3 | 555 | 14 | 1 | 24 | 578 | 4 | 557 | 4.50E-299 | 1036.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070857.t1 | Q9LYU8 | 72.8 | 566 | 133 | 6 | 28 | 578 | 5 | 564 | 6.3e-217 | 755.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070857.t1 | A0A072UIJ3 | 97.3 | 555 | 14 | 1 | 24 | 578 | 4 | 557 | 3.2e-299 | 1036.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051433 | MS.gene070857 | 0.814794 | 1.28E-51 | -1.69E-46 |
MS.gene058076 | MS.gene070857 | 0.823228 | 1.55E-53 | -1.69E-46 |
MS.gene058752 | MS.gene070857 | -0.813055 | 3.11E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 119 sgRNAs with CRISPR-Local
Find 366 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCAGCATATCTTAATAAAT+TGG | 0.158405 | 6.4:+6363828 | MS.gene070857:CDS |
TCAGCAATCATCATTAATTT+TGG | 0.171390 | 6.4:+6366139 | MS.gene070857:CDS |
CAAGACTATTTAGTTTCTTT+TGG | 0.200197 | 6.4:+6363781 | MS.gene070857:CDS |
TGAGAGTGCCCGGAGCTTTC+GGG | 0.215946 | 6.4:-6365451 | None:intergenic |
TCTGCTTTCGGGTATATATT+TGG | 0.221487 | 6.4:-6364503 | None:intergenic |
CCTGCAATTGCAATTGTTAC+TGG | 0.240285 | 6.4:+6364145 | MS.gene070857:CDS |
AGGGGACAGGTTCTGCTTTC+GGG | 0.250446 | 6.4:-6364514 | None:intergenic |
ATGAGAGTGCCCGGAGCTTT+CGG | 0.265423 | 6.4:-6365452 | None:intergenic |
GAGAAGCACGTGATTGAAAA+TGG | 0.284748 | 6.4:+6360719 | MS.gene070857:CDS |
AGCCTCGTCAAATGTCAAAA+AGG | 0.289534 | 6.4:-6364534 | None:intergenic |
ACGACAATTGGGAAAGCATT+AGG | 0.291051 | 6.4:+6364351 | MS.gene070857:CDS |
TTCCGTTGCTAAATCATATT+AGG | 0.296709 | 6.4:+6366794 | MS.gene070857:CDS |
TCTCTGCTCCAGAGCTTTGA+TGG | 0.311721 | 6.4:-6365844 | None:intergenic |
AAGGGGACAGGTTCTGCTTT+CGG | 0.315453 | 6.4:-6364515 | None:intergenic |
GATTTGACAGCTACGACAAT+TGG | 0.340859 | 6.4:+6364339 | MS.gene070857:CDS |
TAAAATATGTCCAGAGCATC+TGG | 0.343928 | 6.4:+6363699 | MS.gene070857:intron |
AGATTCAGTTTCTTCATTCA+TGG | 0.350582 | 6.4:+6360526 | MS.gene070857:CDS |
GATCTCTCAAGGTGCATCTA+AGG | 0.350683 | 6.4:+6366527 | MS.gene070857:CDS |
GCAATTGTTACTGGCTTCCT+TGG | 0.372310 | 6.4:+6364154 | MS.gene070857:CDS |
CGACAATTGGGAAAGCATTA+GGG | 0.375851 | 6.4:+6364352 | MS.gene070857:CDS |
ATATATTTGGATCACATGTT+AGG | 0.375982 | 6.4:-6364490 | None:intergenic |
GCAGCATATCTTAATAAATT+GGG | 0.381607 | 6.4:+6363829 | MS.gene070857:CDS |
GATTGTTGTTCTTTCTGCTA+TGG | 0.389325 | 6.4:+6360889 | MS.gene070857:CDS |
TATACATGTGTGATGAAGTT+TGG | 0.390241 | 6.4:+6360791 | MS.gene070857:CDS |
CCAGTAACAATTGCAATTGC+AGG | 0.390513 | 6.4:-6364145 | None:intergenic |
CTTGCTCATATCTCTTTCCT+TGG | 0.398948 | 6.4:-6365477 | None:intergenic |
AGGAGTGTGGTTGAGGAAGA+AGG | 0.422430 | 6.4:+6360743 | MS.gene070857:CDS |
TTTCGTGTTCTTCGAACCCT+TGG | 0.427652 | 6.4:+6366489 | MS.gene070857:CDS |
ATTGTTGTTCTTTCTGCTAT+GGG | 0.430911 | 6.4:+6360890 | MS.gene070857:CDS |
ATAAAATACACAAATGGAAA+TGG | 0.437599 | 6.4:+6366771 | MS.gene070857:CDS |
TTATAAAAGACCTGCATCTC+AGG | 0.442455 | 6.4:+6362625 | MS.gene070857:CDS |
TGCAATCTCTTTGCAACAGC+CGG | 0.443468 | 6.4:-6364103 | None:intergenic |
ATTAGGGTTACCTGAGATCC+AGG | 0.447612 | 6.4:+6364368 | MS.gene070857:CDS |
CAAAGAGATTGCATGGCGAT+TGG | 0.447713 | 6.4:+6364113 | MS.gene070857:CDS |
GAGAGGATGATGGAAGTTGC+TGG | 0.447869 | 6.4:+6360836 | MS.gene070857:CDS |
CAGTACGACGCATTTGAGAT+TGG | 0.448466 | 6.4:+6364028 | MS.gene070857:intron |
TTCCTACAACCCGAAAGCTC+CGG | 0.449275 | 6.4:+6365442 | MS.gene070857:CDS |
TGCGGTGTTACTAATGTCTC+TGG | 0.455991 | 6.4:+6362585 | MS.gene070857:CDS |
AGATCCATCATCTCTCTCAT+TGG | 0.459874 | 6.4:+6366110 | MS.gene070857:CDS |
GCTAGCTTACTTTGGTGCTC+AGG | 0.462460 | 6.4:+6364562 | MS.gene070857:CDS |
GCCCGGAGCTTTCGGGTTGT+AGG | 0.467599 | 6.4:-6365444 | None:intergenic |
ACAACAATCGGCCTCTCCTC+CGG | 0.468903 | 6.4:-6360875 | None:intergenic |
TCATGTGCAGTAACAACATT+GGG | 0.469729 | 6.4:+6364303 | MS.gene070857:CDS |
GAGATGAAGGAGGGATAAAG+AGG | 0.470473 | 6.4:+6360765 | MS.gene070857:CDS |
AGTGGTGGAAGAAGAAGGTT+AGG | 0.471677 | 6.4:-6360602 | None:intergenic |
GCTGCTGAGCTAGCTTACTT+TGG | 0.473389 | 6.4:+6364554 | MS.gene070857:CDS |
GTTGAGGAAGAAGGAGATGA+AGG | 0.473705 | 6.4:+6360752 | MS.gene070857:CDS |
TATGCACAAACCTGGATCTC+AGG | 0.475768 | 6.4:-6364378 | None:intergenic |
ATTTCCAATGAGAGAGATGA+TGG | 0.483643 | 6.4:-6366114 | None:intergenic |
CGTTGGATCCATCAAAGCTC+TGG | 0.484664 | 6.4:+6365836 | MS.gene070857:CDS |
TCCAGAGCATCTGGAAGCAC+TGG | 0.487144 | 6.4:+6363708 | MS.gene070857:intron |
ATTTGACAGCTACGACAATT+GGG | 0.487957 | 6.4:+6364340 | MS.gene070857:CDS |
TTCAGAACTGTGGATCAACT+TGG | 0.498133 | 6.4:+6362756 | MS.gene070857:intron |
TCGCCAGGTGAATATCTCAT+TGG | 0.501642 | 6.4:+6366668 | MS.gene070857:intron |
TGGTGGTTCGTCGGTTGCGT+CGG | 0.501668 | 6.4:+6360811 | MS.gene070857:CDS |
GTGAGGCAGAGGAATGTGTA+AGG | 0.505130 | 6.4:+6366703 | MS.gene070857:CDS |
ATAGTGAGCACTCGCATGCT+TGG | 0.505310 | 6.4:+6365637 | MS.gene070857:CDS |
TGGTTCGTCGGTTGCGTCGG+CGG | 0.505664 | 6.4:+6360814 | MS.gene070857:CDS |
TCCTTGGTGATGAGAGTGCC+CGG | 0.508593 | 6.4:-6365461 | None:intergenic |
TTACAGATAAAATACACAAA+TGG | 0.509745 | 6.4:+6366765 | MS.gene070857:CDS |
GGAATATCACCTTCTCTAGC+AGG | 0.510399 | 6.4:-6365404 | None:intergenic |
AGGAAGAAGGAGATGAAGGA+GGG | 0.510671 | 6.4:+6360756 | MS.gene070857:CDS |
TCCTACAACCCGAAAGCTCC+GGG | 0.513596 | 6.4:+6365443 | MS.gene070857:CDS |
GAGGAAGAAGGAGATGAAGG+AGG | 0.514520 | 6.4:+6360755 | MS.gene070857:CDS |
TCAGTACGGTTTCCTTGCTA+AGG | 0.514582 | 6.4:+6365660 | MS.gene070857:CDS |
AGTAAATGATAGTGAGGCAG+AGG | 0.514607 | 6.4:+6366692 | MS.gene070857:CDS |
TGCGTCGGCGGAGAGGATGA+TGG | 0.516634 | 6.4:+6360826 | MS.gene070857:CDS |
AAATGGGAGGAGTGTGGTTG+AGG | 0.521852 | 6.4:+6360736 | MS.gene070857:CDS |
AACAAGAACACGTACTTGGC+GGG | 0.530574 | 6.4:-6363860 | None:intergenic |
TCTTAATAAATTGGGTGTCA+AGG | 0.530782 | 6.4:+6363837 | MS.gene070857:CDS |
AGAAGCACGTGATTGAAAAT+GGG | 0.537453 | 6.4:+6360720 | MS.gene070857:CDS |
TGTTACTGGCTTCCTTGGAA+AGG | 0.538431 | 6.4:+6364159 | MS.gene070857:CDS |
TTGGAGAGTGCATGTCCACT+AGG | 0.543790 | 6.4:+6363800 | MS.gene070857:CDS |
ACTCGCATGCTTGGTCAGTA+CGG | 0.544929 | 6.4:+6365646 | MS.gene070857:CDS |
ATAGCAGAAAGAACAACAAT+CGG | 0.545247 | 6.4:-6360887 | None:intergenic |
GATGAAGTTTGGTGGTTCGT+CGG | 0.548092 | 6.4:+6360802 | MS.gene070857:CDS |
TGGCGAGTGGTGGAAGAAGA+AGG | 0.549339 | 6.4:-6360607 | None:intergenic |
ATCATGTGCAGTAACAACAT+TGG | 0.549798 | 6.4:+6364302 | MS.gene070857:CDS |
AGAAGGTGATATTCCAGTAC+GGG | 0.552440 | 6.4:+6365412 | MS.gene070857:CDS |
ACTGCTCTTACCTGAGATGC+AGG | 0.559867 | 6.4:-6362635 | None:intergenic |
CAGGTATGGAAGGATGTTGA+TGG | 0.560605 | 6.4:+6364464 | MS.gene070857:intron |
ATAGCATAATTACCTTTCCA+AGG | 0.564354 | 6.4:-6364171 | None:intergenic |
AGTCAGTGTTTCCTTGACGT+TGG | 0.565062 | 6.4:+6365819 | MS.gene070857:CDS |
GAGCAGAGAACTAATACAGC+AGG | 0.568041 | 6.4:+6365858 | MS.gene070857:CDS |
TTCCTAATATGATTTAGCAA+CGG | 0.574635 | 6.4:-6366796 | None:intergenic |
TTACCTGCATTTCAGAACTG+TGG | 0.577618 | 6.4:+6362746 | MS.gene070857:intron |
AACTGTGGATCAACTTGGAG+TGG | 0.578338 | 6.4:+6362761 | MS.gene070857:CDS |
GAGAAGGTGATATTCCAGTA+CGG | 0.579138 | 6.4:+6365411 | MS.gene070857:CDS |
ACCACTTACGCAGGTATGGA+AGG | 0.583143 | 6.4:+6364454 | MS.gene070857:intron |
ACATGTGTGATGAAGTTTGG+TGG | 0.583186 | 6.4:+6360794 | MS.gene070857:CDS |
GCTGTTGCAAAGAGATTGCA+TGG | 0.587919 | 6.4:+6364106 | MS.gene070857:CDS |
GAAGGTCACGTGCAATGTGT+TGG | 0.588439 | 6.4:+6360697 | MS.gene070857:CDS |
CGTCGGTTGCGTCGGCGGAG+AGG | 0.589117 | 6.4:+6360819 | MS.gene070857:CDS |
ACTGTTCAAATGATCTCTCA+AGG | 0.590004 | 6.4:+6366516 | MS.gene070857:CDS |
TTCTTCCACCACTCGCCACG+TGG | 0.606848 | 6.4:+6360612 | MS.gene070857:CDS |
TGATGCCACGTGGCGAGTGG+TGG | 0.608525 | 6.4:-6360617 | None:intergenic |
GCAGTAACAACATTGGGTAG+AGG | 0.608651 | 6.4:+6364309 | MS.gene070857:CDS |
TCTCTAGTTCTTCAACAACA+TGG | 0.611032 | 6.4:-6366058 | None:intergenic |
ATTGGTAGTAAATGATAGTG+AGG | 0.616034 | 6.4:+6366686 | MS.gene070857:CDS |
TCTATGAGACCTGCTAGAGA+AGG | 0.616190 | 6.4:+6365395 | MS.gene070857:CDS |
AACTGATGACTTCACAAATG+CGG | 0.619684 | 6.4:+6364060 | MS.gene070857:CDS |
CAGTTTCAAAGAAAGCGTGA+TGG | 0.626196 | 6.4:-6366731 | None:intergenic |
CATCAACTCTCACCTTAGCA+AGG | 0.629028 | 6.4:-6365672 | None:intergenic |
AGCACGTGATTGAAAATGGG+AGG | 0.632569 | 6.4:+6360723 | MS.gene070857:CDS |
GTAACAACATTGGGTAGAGG+TGG | 0.638482 | 6.4:+6364312 | MS.gene070857:CDS |
TGATGATGCCACGTGGCGAG+TGG | 0.641795 | 6.4:-6360620 | None:intergenic |
TCATTTGAACAGTGACACCA+AGG | 0.642740 | 6.4:-6366506 | None:intergenic |
TGAGGCAGAGGAATGTGTAA+GGG | 0.643775 | 6.4:+6366704 | MS.gene070857:CDS |
GAAACGTAATGTGACCATGT+TGG | 0.655818 | 6.4:+6365612 | MS.gene070857:CDS |
CTTTGATGGATCCAACGTCA+AGG | 0.658976 | 6.4:-6365830 | None:intergenic |
ATATGCTGCAAAGATCCTAG+TGG | 0.664927 | 6.4:-6363815 | None:intergenic |
GATTGAAAATGGGAGGAGTG+TGG | 0.676631 | 6.4:+6360730 | MS.gene070857:CDS |
TCCGGGCACTCTCATCACCA+AGG | 0.680440 | 6.4:+6365460 | MS.gene070857:CDS |
CAAGGAAAGAGATATGAGCA+AGG | 0.685725 | 6.4:+6365478 | MS.gene070857:CDS |
CATTTGAACAGTGACACCAA+GGG | 0.697565 | 6.4:-6366505 | None:intergenic |
AGTGCTCACTATATCCAACA+TGG | 0.704441 | 6.4:-6365626 | None:intergenic |
CTAGCAGGTCTCATAGACTG+CGG | 0.707348 | 6.4:-6365389 | None:intergenic |
AGAACTAGAGAAAATCGCTG+TGG | 0.730866 | 6.4:+6366070 | MS.gene070857:CDS |
TCTATGCTGATGATGCCACG+TGG | 0.749695 | 6.4:-6360627 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAACATAGTATTTATTT+AGG | - | chr6.4:6362462-6362481 | None:intergenic | 10.0% |
!! | TTAAATCAATAAAAATAGTA+AGG | - | chr6.4:6366209-6366228 | None:intergenic | 10.0% |
!!! | ATAATTTTCTGATAAAAAAA+TGG | + | chr6.4:6364250-6364269 | MS.gene070857:intron | 10.0% |
!!! | TTGTTTTGTATTTAAAATTA+TGG | + | chr6.4:6363309-6363328 | MS.gene070857:intron | 10.0% |
!! | AAATGTTAAAAAGTGAATAA+AGG | - | chr6.4:6366602-6366621 | None:intergenic | 15.0% |
!! | ACACAAAATCTTATATTAAT+TGG | - | chr6.4:6365233-6365252 | None:intergenic | 15.0% |
!! | ACATGTAATAATTTAAAAGA+TGG | - | chr6.4:6361959-6361978 | None:intergenic | 15.0% |
!!! | AATTATTACATGTGTTATTA+TGG | + | chr6.4:6361966-6361985 | MS.gene070857:intron | 15.0% |
!!! | ATAACACCATTTTAAAATTT+GGG | - | chr6.4:6363130-6363149 | None:intergenic | 15.0% |
!!! | ATTTTGTTTTATTTTCAGTT+GGG | + | chr6.4:6364831-6364850 | MS.gene070857:intron | 15.0% |
!!! | TAATTTATTGGTCTAATTTT+TGG | + | chr6.4:6364922-6364941 | MS.gene070857:intron | 15.0% |
!!! | TATAACACCATTTTAAAATT+TGG | - | chr6.4:6363131-6363150 | None:intergenic | 15.0% |
!!! | TTGTTTCTGTTATAATTTAT+TGG | + | chr6.4:6364910-6364929 | MS.gene070857:intron | 15.0% |
!! | AAAATTGCGCAATTAAAAAT+AGG | - | chr6.4:6361525-6361544 | None:intergenic | 20.0% |
!! | AAATTCATTGTAAAAAAGGA+AGG | - | chr6.4:6362676-6362695 | None:intergenic | 20.0% |
!! | AGTGAAATTCATTGTAAAAA+AGG | - | chr6.4:6362680-6362699 | None:intergenic | 20.0% |
!! | ATAAAATACACAAATGGAAA+TGG | + | chr6.4:6366771-6366790 | MS.gene070857:CDS | 20.0% |
!! | ATAGAAAATCAAATTACTAG+AGG | + | chr6.4:6365025-6365044 | MS.gene070857:intron | 20.0% |
!! | ATTATGTTTGTTCTGTTATT+AGG | + | chr6.4:6362542-6362561 | MS.gene070857:intron | 20.0% |
!! | ATTGAATGTAACTAAATGTA+TGG | + | chr6.4:6361135-6361154 | MS.gene070857:intron | 20.0% |
!! | GTACTACATACATAATAATA+TGG | - | chr6.4:6361842-6361861 | None:intergenic | 20.0% |
!! | TAAAAAAGGAAGGAAAAAAA+AGG | - | chr6.4:6362666-6362685 | None:intergenic | 20.0% |
!! | TCAATAAAAATAGTAAGGAT+AGG | - | chr6.4:6366204-6366223 | None:intergenic | 20.0% |
!! | TTACAGATAAAATACACAAA+TGG | + | chr6.4:6366765-6366784 | MS.gene070857:CDS | 20.0% |
!! | TTGTAAAAAAACATAGTAGA+TGG | + | chr6.4:6364985-6365004 | MS.gene070857:intron | 20.0% |
!!! | AAAATTGGTTTTTACATGTT+TGG | + | chr6.4:6362200-6362219 | MS.gene070857:intron | 20.0% |
!!! | AAATTGGTTTTTACATGTTT+GGG | + | chr6.4:6362201-6362220 | MS.gene070857:intron | 20.0% |
!!! | ACATAGTATTTATTTAGGAT+CGG | - | chr6.4:6362457-6362476 | None:intergenic | 20.0% |
!!! | ACATGTAAAAGTATAAAAAC+CGG | - | chr6.4:6365734-6365753 | None:intergenic | 20.0% |
!!! | AGTAAAATAAAAAGAAGTGT+TGG | - | chr6.4:6364206-6364225 | None:intergenic | 20.0% |
!!! | CTACGTTTAATTATTTTTGT+TGG | + | chr6.4:6366426-6366445 | MS.gene070857:intron | 20.0% |
!!! | GATTTTGTTTTATTTTCAGT+TGG | + | chr6.4:6364830-6364849 | MS.gene070857:intron | 20.0% |
!!! | GGAATTAATTTTGTCTAAAT+TGG | + | chr6.4:6362235-6362254 | MS.gene070857:intron | 20.0% |
!!! | GTAAAATAAAAAGAAGTGTT+GGG | - | chr6.4:6364205-6364224 | None:intergenic | 20.0% |
!!! | TAATGTCTTTTTGTCAATAA+CGG | - | chr6.4:6365187-6365206 | None:intergenic | 20.0% |
!!! | TGACAAAAAGACATTATTTT+GGG | + | chr6.4:6365191-6365210 | MS.gene070857:intron | 20.0% |
!!! | TGATTTGTGTATTTGTTTAT+AGG | + | chr6.4:6362853-6362872 | MS.gene070857:intron | 20.0% |
!!! | TTGACAAAAAGACATTATTT+TGG | + | chr6.4:6365190-6365209 | MS.gene070857:intron | 20.0% |
! | AAACCATATTGAGAATAAGA+AGG | - | chr6.4:6363627-6363646 | None:intergenic | 25.0% |
! | AATGGTCAAAATTTGTGAAA+TGG | + | chr6.4:6361738-6361757 | MS.gene070857:intron | 25.0% |
! | ACTGATTAACATTCTATTAC+AGG | + | chr6.4:6366464-6366483 | MS.gene070857:intron | 25.0% |
! | AGAAAAAGGTAGAGATAAAA+AGG | - | chr6.4:6366263-6366282 | None:intergenic | 25.0% |
! | AGTCAGCAAAATTTAAATGT+TGG | + | chr6.4:6364662-6364681 | MS.gene070857:intron | 25.0% |
! | ATATATTTGGATCACATGTT+AGG | - | chr6.4:6364493-6364512 | None:intergenic | 25.0% |
! | ATCAATTGAAATGATACAAG+AGG | - | chr6.4:6361609-6361628 | None:intergenic | 25.0% |
! | ATGGTCAAAATTTGTGAAAT+GGG | + | chr6.4:6361739-6361758 | MS.gene070857:intron | 25.0% |
! | CAAAATTTAAATGTTGGAGT+TGG | + | chr6.4:6364668-6364687 | MS.gene070857:intron | 25.0% |
! | GCAGAATTTGAATAAATTTC+TGG | - | chr6.4:6362409-6362428 | None:intergenic | 25.0% |
! | GCAGCATATCTTAATAAATT+GGG | + | chr6.4:6363829-6363848 | MS.gene070857:CDS | 25.0% |
! | TATCAGTACTAGGATATAAA+TGG | - | chr6.4:6361260-6361279 | None:intergenic | 25.0% |
! | TGAGTATACAGTTTATTAAG+TGG | - | chr6.4:6366556-6366575 | None:intergenic | 25.0% |
! | TGATTCTAGACACATAAAAT+TGG | + | chr6.4:6362185-6362204 | MS.gene070857:intron | 25.0% |
! | TGCAGCATATCTTAATAAAT+TGG | + | chr6.4:6363828-6363847 | MS.gene070857:CDS | 25.0% |
! | TTCATAGCATCATAATTATC+CGG | + | chr6.4:6366236-6366255 | MS.gene070857:intron | 25.0% |
! | TTGGATTCTAACTTAAAGTT+AGG | + | chr6.4:6362254-6362273 | MS.gene070857:intron | 25.0% |
! | TTTATAAAACACTCATGCAA+GGG | - | chr6.4:6363514-6363533 | None:intergenic | 25.0% |
!! | AATCGTAACCTTATCAATTT+TGG | + | chr6.4:6363600-6363619 | MS.gene070857:intron | 25.0% |
!! | GTTTGTTGCTAATTTATTTC+TGG | + | chr6.4:6364005-6364024 | MS.gene070857:intron | 25.0% |
!! | TACTTTTACATGTATACAAC+AGG | + | chr6.4:6365741-6365760 | MS.gene070857:intron | 25.0% |
!! | TCAGCAATCATCATTAATTT+TGG | + | chr6.4:6366139-6366158 | MS.gene070857:CDS | 25.0% |
!! | TCATATATGAACTCATTTTC+AGG | - | chr6.4:6363268-6363287 | None:intergenic | 25.0% |
!! | TGTGTATTTTATCTGTAAGT+CGG | - | chr6.4:6366763-6366782 | None:intergenic | 25.0% |
!! | TTTTCAACATCAGAAAACAA+AGG | - | chr6.4:6362507-6362526 | None:intergenic | 25.0% |
!! | TTTTCAATCTTCGAAGATTT+AGG | + | chr6.4:6365766-6365785 | MS.gene070857:CDS | 25.0% |
!!! | ATCATCATTAATTTTGGAGA+AGG | + | chr6.4:6366145-6366164 | MS.gene070857:CDS | 25.0% |
!!! | ATTCTTTCAAGTACTTTTTC+TGG | + | chr6.4:6364803-6364822 | MS.gene070857:intron | 25.0% |
!!! | CAAGACTATTTAGTTTCTTT+TGG | + | chr6.4:6363781-6363800 | MS.gene070857:CDS | 25.0% |
!!! | GAACTTGTGTTTTTTCTTAA+AGG | + | chr6.4:6364272-6364291 | MS.gene070857:intron | 25.0% |
!!! | TAGTTTTGGATTGTAAAGTT+TGG | - | chr6.4:6365075-6365094 | None:intergenic | 25.0% |
!!! | TATTTTAGAAGCAACTTATC+CGG | + | chr6.4:6364084-6364103 | MS.gene070857:CDS | 25.0% |
!!! | TTTCATTTTAGTTGCTAACT+TGG | + | chr6.4:6363665-6363684 | MS.gene070857:intron | 25.0% |
AAAACAGATTATTCAAGCTG+TGG | - | chr6.4:6366351-6366370 | None:intergenic | 30.0% | |
AAAATCGCACAATTAGAATC+AGG | + | chr6.4:6361766-6361785 | MS.gene070857:intron | 30.0% | |
AAATCGCACAATTAGAATCA+GGG | + | chr6.4:6361767-6361786 | MS.gene070857:intron | 30.0% | |
AAGAAGGTCCAAAATTGATA+AGG | - | chr6.4:6363611-6363630 | None:intergenic | 30.0% | |
AATCAGTACTACTACTACTA+CGG | - | chr6.4:6360981-6361000 | None:intergenic | 30.0% | |
ACATTGAAAGTAATCTTCAG+TGG | + | chr6.4:6361322-6361341 | MS.gene070857:intron | 30.0% | |
ACTTCTGTCTTTAGATTTGT+CGG | + | chr6.4:6364867-6364886 | MS.gene070857:intron | 30.0% | |
AGATTCAGTTTCTTCATTCA+TGG | + | chr6.4:6360526-6360545 | MS.gene070857:CDS | 30.0% | |
ATAGCAGAAAGAACAACAAT+CGG | - | chr6.4:6360890-6360909 | None:intergenic | 30.0% | |
ATAGCATAATTACCTTTCCA+AGG | - | chr6.4:6364174-6364193 | None:intergenic | 30.0% | |
ATATAATTTAGCTGTTGCTG+TGG | - | chr6.4:6363537-6363556 | None:intergenic | 30.0% | |
ATGAAAACAAAGTGGCTATT+TGG | - | chr6.4:6361681-6361700 | None:intergenic | 30.0% | |
ATTAGCAACAAACTATGATC+AGG | - | chr6.4:6363998-6364017 | None:intergenic | 30.0% | |
ATTGCAGAAGAACTTAATCT+TGG | - | chr6.4:6366402-6366421 | None:intergenic | 30.0% | |
CAATTGATCTTACTTGATCA+TGG | + | chr6.4:6361621-6361640 | MS.gene070857:intron | 30.0% | |
CATTTCAAAATGGAGACAAA+AGG | + | chr6.4:6364415-6364434 | MS.gene070857:intron | 30.0% | |
CTGAACATGTGTTTATAAGT+GGG | + | chr6.4:6363056-6363075 | MS.gene070857:intron | 30.0% | |
GATCTAACATGAAAACAAAG+TGG | - | chr6.4:6361689-6361708 | None:intergenic | 30.0% | |
GTTTATAAAACACTCATGCA+AGG | - | chr6.4:6363515-6363534 | None:intergenic | 30.0% | |
TATACATGTGTGATGAAGTT+TGG | + | chr6.4:6360791-6360810 | MS.gene070857:CDS | 30.0% | |
TCACAACAAAACTAAAGAAG+TGG | - | chr6.4:6363012-6363031 | None:intergenic | 30.0% | |
TCATAGCATCATAATTATCC+GGG | + | chr6.4:6366237-6366256 | MS.gene070857:intron | 30.0% | |
TCTAATTTAACCCTCAAAAC+CGG | - | chr6.4:6363103-6363122 | None:intergenic | 30.0% | |
TCTGAACATGTGTTTATAAG+TGG | + | chr6.4:6363055-6363074 | MS.gene070857:intron | 30.0% | |
TCTTAATAAATTGGGTGTCA+AGG | + | chr6.4:6363837-6363856 | MS.gene070857:CDS | 30.0% | |
TGCACACAATATAACATATC+AGG | - | chr6.4:6362903-6362922 | None:intergenic | 30.0% | |
TGGTCAAAATTTGTGAAATG+GGG | + | chr6.4:6361740-6361759 | MS.gene070857:intron | 30.0% | |
TTAACATTGAAAGTCGAAGT+TGG | + | chr6.4:6361437-6361456 | MS.gene070857:intron | 30.0% | |
TTACGAATTTCCGAAAAAAG+CGG | + | chr6.4:6360670-6360689 | MS.gene070857:CDS | 30.0% | |
TTAGCAACAAACTATGATCA+GGG | - | chr6.4:6363997-6364016 | None:intergenic | 30.0% | |
TTATTGTGTTAAGCAAGACT+TGG | + | chr6.4:6365533-6365552 | MS.gene070857:intron | 30.0% | |
TTGTCAAATAGCAGTTATAG+TGG | - | chr6.4:6362357-6362376 | None:intergenic | 30.0% | |
TTGTCTATGTAAGTTCATCA+GGG | - | chr6.4:6365937-6365956 | None:intergenic | 30.0% | |
TTTGTCTATGTAAGTTCATC+AGG | - | chr6.4:6365938-6365957 | None:intergenic | 30.0% | |
! | ATATGCATTAGTTTCCATGA+TGG | + | chr6.4:6363482-6363501 | MS.gene070857:intron | 30.0% |
! | ATTAGGCTTAAATGCAGTTT+TGG | + | chr6.4:6361465-6361484 | MS.gene070857:intron | 30.0% |
! | ATTGGTAGTAAATGATAGTG+AGG | + | chr6.4:6366686-6366705 | MS.gene070857:CDS | 30.0% |
! | ATTGTTGTTCTTTCTGCTAT+GGG | + | chr6.4:6360890-6360909 | MS.gene070857:CDS | 30.0% |
!! | AGTCGAAGTTGGTATAAATT+AGG | + | chr6.4:6361448-6361467 | MS.gene070857:intron | 30.0% |
!! | ATTAGGTGTTACTTGCAATA+TGG | + | chr6.4:6365968-6365987 | MS.gene070857:intron | 30.0% |
!! | CAATCAAAAGTATCAGTACT+AGG | - | chr6.4:6361270-6361289 | None:intergenic | 30.0% |
!! | GACCAACCCAAATTTTAAAA+TGG | + | chr6.4:6363121-6363140 | MS.gene070857:intron | 30.0% |
!! | TATGTGTCTAGAATCACTTT+TGG | - | chr6.4:6362181-6362200 | None:intergenic | 30.0% |
!! | TCGAAGTTGGTATCAAAAAA+TGG | + | chr6.4:6361171-6361190 | MS.gene070857:intron | 30.0% |
!!! | AGATGATGGATCTATTTTGT+AGG | - | chr6.4:6366103-6366122 | None:intergenic | 30.0% |
!!! | CACCATTTTAAAATTTGGGT+TGG | - | chr6.4:6363126-6363145 | None:intergenic | 30.0% |
!!! | GTATGCTTTTTCTTGTGAAT+AGG | - | chr6.4:6363563-6363582 | None:intergenic | 30.0% |
!!! | TGTGATTCTTCGATTAGTTT+TGG | - | chr6.4:6365089-6365108 | None:intergenic | 30.0% |
AAACAACAAGAACACGTACT+TGG | - | chr6.4:6363867-6363886 | None:intergenic | 35.0% | |
AAATATATTCCCCGATTCAC+AGG | + | chr6.4:6365358-6365377 | MS.gene070857:intron | 35.0% | |
AAATCTGCGTAATGTGTGTT+TGG | + | chr6.4:6362138-6362157 | MS.gene070857:intron | 35.0% | |
AACTGATGACTTCACAAATG+CGG | + | chr6.4:6364060-6364079 | MS.gene070857:CDS | 35.0% | |
AAGTTCCTGCTAAACAACAA+AGG | - | chr6.4:6366036-6366055 | None:intergenic | 35.0% | |
AATGTAGAAGCAATGTAGTC+GGG | + | chr6.4:6364744-6364763 | MS.gene070857:intron | 35.0% | |
ACACTAATAATTAGCACCAG+AGG | - | chr6.4:6364950-6364969 | None:intergenic | 35.0% | |
ACTGTTCAAATGATCTCTCA+AGG | + | chr6.4:6366516-6366535 | MS.gene070857:CDS | 35.0% | |
AGATGGTGAATTATGCACAT+TGG | + | chr6.4:6365002-6365021 | MS.gene070857:intron | 35.0% | |
ATAACGGCATACCAAAAAAG+AGG | - | chr6.4:6365171-6365190 | None:intergenic | 35.0% | |
ATATCGCTAATCTCACAAAC+CGG | + | chr6.4:6363081-6363100 | MS.gene070857:intron | 35.0% | |
ATCATGTGCAGTAACAACAT+TGG | + | chr6.4:6364302-6364321 | MS.gene070857:CDS | 35.0% | |
ATTCAAATTCTGCACTGCTA+TGG | + | chr6.4:6362416-6362435 | MS.gene070857:intron | 35.0% | |
ATTTCCAATGAGAGAGATGA+TGG | - | chr6.4:6366117-6366136 | None:intergenic | 35.0% | |
ATTTGACAGCTACGACAATT+GGG | + | chr6.4:6364340-6364359 | MS.gene070857:CDS | 35.0% | |
CAATGTAGAAGCAATGTAGT+CGG | + | chr6.4:6364743-6364762 | MS.gene070857:intron | 35.0% | |
CAATGTCAAATACGTGTCAT+TGG | + | chr6.4:6361060-6361079 | MS.gene070857:intron | 35.0% | |
CAATGTCAATGACATGTATC+TGG | - | chr6.4:6361308-6361327 | None:intergenic | 35.0% | |
CACAGTTCTGCATTTCAAAA+TGG | + | chr6.4:6364405-6364424 | MS.gene070857:intron | 35.0% | |
CAGCAATACTTGTAGCATTA+TGG | + | chr6.4:6362921-6362940 | MS.gene070857:intron | 35.0% | |
CATTCAACGACAACAATGAT+AGG | - | chr6.4:6365707-6365726 | None:intergenic | 35.0% | |
GGACCTTCTTATTCTCAATA+TGG | + | chr6.4:6363621-6363640 | MS.gene070857:intron | 35.0% | |
TAGTCGGGTATTTCATCTAT+TGG | + | chr6.4:6364759-6364778 | MS.gene070857:intron | 35.0% | |
TCAGGTATCATTACATTCTC+TGG | + | chr6.4:6364580-6364599 | MS.gene070857:intron | 35.0% | |
TCATGTGCAGTAACAACATT+GGG | + | chr6.4:6364303-6364322 | MS.gene070857:CDS | 35.0% | |
TCCTCGGTTTACAAATTTCT+GGG | - | chr6.4:6363362-6363381 | None:intergenic | 35.0% | |
TGTCACGTCATCAAATTGAA+TGG | + | chr6.4:6361720-6361739 | MS.gene070857:intron | 35.0% | |
TGTTTGTTCTGTTATTAGGC+TGG | + | chr6.4:6362546-6362565 | MS.gene070857:intron | 35.0% | |
TTAATTTCAACCACTTACGC+AGG | + | chr6.4:6364445-6364464 | MS.gene070857:intron | 35.0% | |
TTATAAAAGACCTGCATCTC+AGG | + | chr6.4:6362625-6362644 | MS.gene070857:CDS | 35.0% | |
TTGACATTGAAAGTCGAAGT+TGG | + | chr6.4:6361158-6361177 | MS.gene070857:intron | 35.0% | |
! | AACTACTAACAAGCTTTTGC+TGG | + | chr6.4:6360916-6360935 | MS.gene070857:CDS | 35.0% |
! | AATTGTGGTTTGGCCAAAAT+AGG | + | chr6.4:6361796-6361815 | MS.gene070857:intron | 35.0% |
! | AGAAGCACGTGATTGAAAAT+GGG | + | chr6.4:6360720-6360739 | MS.gene070857:CDS | 35.0% |
! | ATTGTGGTTTGGCCAAAATA+GGG | + | chr6.4:6361797-6361816 | MS.gene070857:intron | 35.0% |
! | CACATCTAGAACTAGACATT+TGG | - | chr6.4:6363205-6363224 | None:intergenic | 35.0% |
! | GATCTTTGATCTGTTTGTTG+AGG | + | chr6.4:6365900-6365919 | MS.gene070857:intron | 35.0% |
! | GATTGTTGTTCTTTCTGCTA+TGG | + | chr6.4:6360889-6360908 | MS.gene070857:CDS | 35.0% |
! | GTACTGACACTTCATATTGA+AGG | + | chr6.4:6361858-6361877 | MS.gene070857:intron | 35.0% |
! | GTTTTCTGTTTACAATCTGC+AGG | + | chr6.4:6365567-6365586 | MS.gene070857:intron | 35.0% |
! | TAAAATATGTCCAGAGCATC+TGG | + | chr6.4:6363699-6363718 | MS.gene070857:intron | 35.0% |
! | TAGGAATTTTTAACCCGTAC+TGG | - | chr6.4:6365428-6365447 | None:intergenic | 35.0% |
! | TCTGCTTTCGGGTATATATT+TGG | - | chr6.4:6364506-6364525 | None:intergenic | 35.0% |
! | TTTTGACCGAATCGCAATTT+TGG | + | chr6.4:6361496-6361515 | MS.gene070857:intron | 35.0% |
! | TTTTGGCCAAACCACAATTT+TGG | - | chr6.4:6361795-6361814 | None:intergenic | 35.0% |
!! | AATGTCTAGTTCTAGATGTG+AGG | + | chr6.4:6363205-6363224 | MS.gene070857:intron | 35.0% |
!! | AATTGCGATTCGGTCAAAAT+AGG | - | chr6.4:6361495-6361514 | None:intergenic | 35.0% |
!! | ATGTCTAGTTCTAGATGTGA+GGG | + | chr6.4:6363206-6363225 | MS.gene070857:intron | 35.0% |
!! | GTAATGTGTGTTTGGTTTGA+TGG | + | chr6.4:6362146-6362165 | MS.gene070857:intron | 35.0% |
!! | TCTCTAGTTCTTCAACAACA+TGG | - | chr6.4:6366061-6366080 | None:intergenic | 35.0% |
!! | TTGGTTTTTACATGTTTGGG+TGG | + | chr6.4:6362204-6362223 | MS.gene070857:intron | 35.0% |
!! | TTTTGTTGTGAGTCTTGCAA+TGG | + | chr6.4:6363021-6363040 | MS.gene070857:intron | 35.0% |
!!! | TGGACTTGTTATGAGTTTTC+CGG | + | chr6.4:6360856-6360875 | MS.gene070857:CDS | 35.0% |
!!! | TTACTTCCCTGTGTCATTTT+GGG | + | chr6.4:6364714-6364733 | MS.gene070857:intron | 35.0% |
!!! | TTTACTTCCCTGTGTCATTT+TGG | + | chr6.4:6364713-6364732 | MS.gene070857:intron | 35.0% |
AACAAATGACATTCCCCACA+TGG | - | chr6.4:6366286-6366305 | None:intergenic | 40.0% | |
AAGGTAGAGATAAAAAGGCC+CGG | - | chr6.4:6366258-6366277 | None:intergenic | 40.0% | |
ACAACAATGATAGGTCTGAC+AGG | - | chr6.4:6365698-6365717 | None:intergenic | 40.0% | |
ACAGATAACATCCCTTGTAC+TGG | - | chr6.4:6365316-6365335 | None:intergenic | 40.0% | |
ACATGTGTGATGAAGTTTGG+TGG | + | chr6.4:6360794-6360813 | MS.gene070857:CDS | 40.0% | |
ACCCAGAAATTTGTAAACCG+AGG | + | chr6.4:6363358-6363377 | MS.gene070857:intron | 40.0% | |
ACTATCCCCAAAATGACACA+GGG | - | chr6.4:6364723-6364742 | None:intergenic | 40.0% | |
AGAACTAGAGAAAATCGCTG+TGG | + | chr6.4:6366070-6366089 | MS.gene070857:CDS | 40.0% | |
AGAAGGTGATATTCCAGTAC+GGG | + | chr6.4:6365412-6365431 | MS.gene070857:CDS | 40.0% | |
AGATCCATCATCTCTCTCAT+TGG | + | chr6.4:6366110-6366129 | MS.gene070857:CDS | 40.0% | |
AGCCTCGTCAAATGTCAAAA+AGG | - | chr6.4:6364537-6364556 | None:intergenic | 40.0% | |
AGGCAACCAAAATTGCGATT+CGG | - | chr6.4:6361505-6361524 | None:intergenic | 40.0% | |
AGGGAACCAAAATTGTGGTT+TGG | + | chr6.4:6361786-6361805 | MS.gene070857:intron | 40.0% | |
AGTGCTCACTATATCCAACA+TGG | - | chr6.4:6365629-6365648 | None:intergenic | 40.0% | |
ATATGCCAAGCTTGTAACAC+TGG | + | chr6.4:6363420-6363439 | MS.gene070857:intron | 40.0% | |
ATATGCTGCAAAGATCCTAG+TGG | - | chr6.4:6363818-6363837 | None:intergenic | 40.0% | |
ATTAGAGTTATGCCATGGCT+GGG | - | chr6.4:6366006-6366025 | None:intergenic | 40.0% | |
CAACTCTGACTAAAGTCATC+AGG | + | chr6.4:6363957-6363976 | MS.gene070857:intron | 40.0% | |
CAAGGAAAGAGATATGAGCA+AGG | + | chr6.4:6365478-6365497 | MS.gene070857:CDS | 40.0% | |
CAGATAACATCCCTTGTACT+GGG | - | chr6.4:6365315-6365334 | None:intergenic | 40.0% | |
CATTTGAACAGTGACACCAA+GGG | - | chr6.4:6366508-6366527 | None:intergenic | 40.0% | |
CCAGTAACAATTGCAATTGC+AGG | - | chr6.4:6364148-6364167 | None:intergenic | 40.0% | |
CCTCGTCAAATGTCAAAAAG+GGG | - | chr6.4:6364535-6364554 | None:intergenic | 40.0% | |
CCTGCAATTGCAATTGTTAC+TGG | + | chr6.4:6364145-6364164 | MS.gene070857:CDS | 40.0% | |
CGCTACATCATCAAATCAGA+TGG | - | chr6.4:6361567-6361586 | None:intergenic | 40.0% | |
CGGGTATTTCATCTATTGGT+GGG | + | chr6.4:6364763-6364782 | MS.gene070857:intron | 40.0% | |
CTACCAATGAGATATTCACC+TGG | - | chr6.4:6366674-6366693 | None:intergenic | 40.0% | |
CTCCTCGGTTTACAAATTTC+TGG | - | chr6.4:6363363-6363382 | None:intergenic | 40.0% | |
CTGATGACTTTAGTCAGAGT+TGG | - | chr6.4:6363959-6363978 | None:intergenic | 40.0% | |
CTTGCTCATATCTCTTTCCT+TGG | - | chr6.4:6365480-6365499 | None:intergenic | 40.0% | |
GAAACGTAATGTGACCATGT+TGG | + | chr6.4:6365612-6365631 | MS.gene070857:CDS | 40.0% | |
GAATCAGGGAACCAAAATTG+TGG | + | chr6.4:6361781-6361800 | MS.gene070857:intron | 40.0% | |
GACGTATTAGAGTTATGCCA+TGG | - | chr6.4:6366011-6366030 | None:intergenic | 40.0% | |
GAGAAGGTGATATTCCAGTA+CGG | + | chr6.4:6365411-6365430 | MS.gene070857:CDS | 40.0% | |
GAGTTGGACAACATGATTAG+AGG | - | chr6.4:6363943-6363962 | None:intergenic | 40.0% | |
GATTTGACAGCTACGACAAT+TGG | + | chr6.4:6364339-6364358 | MS.gene070857:CDS | 40.0% | |
GCCTCGTCAAATGTCAAAAA+GGG | - | chr6.4:6364536-6364555 | None:intergenic | 40.0% | |
GGTCATATCTCATCCAATGT+AGG | - | chr6.4:6363247-6363266 | None:intergenic | 40.0% | |
GTCTTGCAATGGATGAGATA+TGG | + | chr6.4:6363032-6363051 | MS.gene070857:intron | 40.0% | |
GTGTATTGAGAGTCCTACAT+TGG | + | chr6.4:6363231-6363250 | MS.gene070857:intron | 40.0% | |
TAATACAGCAGGCAAGTGTA+AGG | + | chr6.4:6365869-6365888 | MS.gene070857:intron | 40.0% | |
TAGAATGTAGCTGCAACTGT+AGG | - | chr6.4:6363463-6363482 | None:intergenic | 40.0% | |
TATTAGAGTTATGCCATGGC+TGG | - | chr6.4:6366007-6366026 | None:intergenic | 40.0% | |
TCAAATGTCAAAAAGGGGAC+AGG | - | chr6.4:6364530-6364549 | None:intergenic | 40.0% | |
TCATTTGAACAGTGACACCA+AGG | - | chr6.4:6366509-6366528 | None:intergenic | 40.0% | |
TCCTACAATGTTGATGTCAG+AGG | + | chr6.4:6364632-6364651 | MS.gene070857:intron | 40.0% | |
TCCTCTGACATCAACATTGT+AGG | - | chr6.4:6364636-6364655 | None:intergenic | 40.0% | |
TCGGGTATTTCATCTATTGG+TGG | + | chr6.4:6364762-6364781 | MS.gene070857:intron | 40.0% | |
TCTATGTAAGTTCATCAGGG+AGG | - | chr6.4:6365934-6365953 | None:intergenic | 40.0% | |
TCTGTCTTTAGATTTGTCGG+TGG | + | chr6.4:6364870-6364889 | MS.gene070857:intron | 40.0% | |
TGTCTGATAGGTGTAAGCTT+TGG | + | chr6.4:6361890-6361909 | MS.gene070857:intron | 40.0% | |
TTACCTGCATTTCAGAACTG+TGG | + | chr6.4:6362746-6362765 | MS.gene070857:intron | 40.0% | |
TTCAGAACTGTGGATCAACT+TGG | + | chr6.4:6362756-6362775 | MS.gene070857:intron | 40.0% | |
! | AGTAAATGATAGTGAGGCAG+AGG | + | chr6.4:6366692-6366711 | MS.gene070857:CDS | 40.0% |
! | ATTTTCAGTTGGGTCTCTTG+TGG | + | chr6.4:6364841-6364860 | MS.gene070857:intron | 40.0% |
! | CACTGGAGCAACTTTTGAAT+GGG | + | chr6.4:6363725-6363744 | MS.gene070857:CDS | 40.0% |
! | CAGTTTCAAAGAAAGCGTGA+TGG | - | chr6.4:6366734-6366753 | None:intergenic | 40.0% |
! | CTCTACCTTTTTCTCCATGT+GGG | + | chr6.4:6366269-6366288 | MS.gene070857:intron | 40.0% |
! | CTTCATATTGAAGGCACATC+TGG | + | chr6.4:6361867-6361886 | MS.gene070857:intron | 40.0% |
! | GAGAAGCACGTGATTGAAAA+TGG | + | chr6.4:6360719-6360738 | MS.gene070857:CDS | 40.0% |
! | GGAATGTCATTTGTTTACCC+TGG | + | chr6.4:6366291-6366310 | MS.gene070857:intron | 40.0% |
! | TCTACCTTTTTCTCCATGTG+GGG | + | chr6.4:6366270-6366289 | MS.gene070857:intron | 40.0% |
! | TCTCTACCTTTTTCTCCATG+TGG | + | chr6.4:6366268-6366287 | MS.gene070857:intron | 40.0% |
! | TGTGTTGATATGCACAAACC+TGG | - | chr6.4:6364389-6364408 | None:intergenic | 40.0% |
! | TTGTGGTTTGGCCAAAATAG+GGG | + | chr6.4:6361798-6361817 | MS.gene070857:intron | 40.0% |
! | TTTTCAGTTGGGTCTCTTGT+GGG | + | chr6.4:6364842-6364861 | MS.gene070857:intron | 40.0% |
!! | AATCTCACAAACCGGTTTTG+AGG | + | chr6.4:6363089-6363108 | MS.gene070857:intron | 40.0% |
!! | ACGACAATTGGGAAAGCATT+AGG | + | chr6.4:6364351-6364370 | MS.gene070857:CDS | 40.0% |
!! | ATCTCACAAACCGGTTTTGA+GGG | + | chr6.4:6363090-6363109 | MS.gene070857:intron | 40.0% |
!! | CGACAATTGGGAAAGCATTA+GGG | + | chr6.4:6364352-6364371 | MS.gene070857:CDS | 40.0% |
!! | GCAGTTTTAGTCCCCTATTT+TGG | - | chr6.4:6361812-6361831 | None:intergenic | 40.0% |
!! | GTCTTCCTTTGTTGTTTAGC+AGG | + | chr6.4:6366028-6366047 | MS.gene070857:intron | 40.0% |
!! | TGTCTAGTTCTAGATGTGAG+GGG | + | chr6.4:6363207-6363226 | MS.gene070857:intron | 40.0% |
!!! | ACTTGTTATGAGTTTTCCGG+AGG | + | chr6.4:6360859-6360878 | MS.gene070857:CDS | 40.0% |
!!! | TACTTCCCTGTGTCATTTTG+GGG | + | chr6.4:6364715-6364734 | MS.gene070857:intron | 40.0% |
!!! | TGTTTTTTGTTTCCCAGCCA+TGG | + | chr6.4:6365991-6366010 | MS.gene070857:intron | 40.0% |
!!! | TTCAAGTACTTTTTCTGGCG+TGG | + | chr6.4:6364808-6364827 | MS.gene070857:intron | 40.0% |
!!! | TTCTCTGTTTTGTTTTCGCC+AGG | + | chr6.4:6366653-6366672 | MS.gene070857:intron | 40.0% |
AACAAGAACACGTACTTGGC+GGG | - | chr6.4:6363863-6363882 | None:intergenic | 45.0% | |
AACTGTGGATCAACTTGGAG+TGG | + | chr6.4:6362761-6362780 | MS.gene070857:CDS | 45.0% | |
AAGTGAGTGAACCCAGTACA+AGG | + | chr6.4:6365301-6365320 | MS.gene070857:intron | 45.0% | |
AGACAAATGCCTGCTCGATT+AGG | + | chr6.4:6365951-6365970 | MS.gene070857:intron | 45.0% | |
AGCACGTGATTGAAAATGGG+AGG | + | chr6.4:6360723-6360742 | MS.gene070857:CDS | 45.0% | |
AGGAAGAAGGAGATGAAGGA+GGG | + | chr6.4:6360756-6360775 | MS.gene070857:CDS | 45.0% | |
AGTCAGTGTTTCCTTGACGT+TGG | + | chr6.4:6365819-6365838 | MS.gene070857:CDS | 45.0% | |
AGTGAGTGAACCCAGTACAA+GGG | + | chr6.4:6365302-6365321 | MS.gene070857:intron | 45.0% | |
ATTAGGGTTACCTGAGATCC+AGG | + | chr6.4:6364368-6364387 | MS.gene070857:CDS | 45.0% | |
CAAAGAGATTGCATGGCGAT+TGG | + | chr6.4:6364113-6364132 | MS.gene070857:CDS | 45.0% | |
CAACAAGAACACGTACTTGG+CGG | - | chr6.4:6363864-6363883 | None:intergenic | 45.0% | |
CAAGTAACACCTAATCGAGC+AGG | - | chr6.4:6365963-6365982 | None:intergenic | 45.0% | |
CAGGTATGGAAGGATGTTGA+TGG | + | chr6.4:6364464-6364483 | MS.gene070857:intron | 45.0% | |
CATCAACTCTCACCTTAGCA+AGG | - | chr6.4:6365675-6365694 | None:intergenic | 45.0% | |
CATTCCCCACATGGAGAAAA+AGG | - | chr6.4:6366277-6366296 | None:intergenic | 45.0% | |
CCATCTGTTATCGAGTCACT+AGG | + | chr6.4:6363172-6363191 | MS.gene070857:intron | 45.0% | |
CCTAGTGACTCGATAACAGA+TGG | - | chr6.4:6363175-6363194 | None:intergenic | 45.0% | |
CGAATTTCCGAAAAAAGCGG+CGG | + | chr6.4:6360673-6360692 | MS.gene070857:CDS | 45.0% | |
CTCGATAACAGATGGCACAA+CGG | - | chr6.4:6363167-6363186 | None:intergenic | 45.0% | |
GACTATCCCCAAAATGACAC+AGG | - | chr6.4:6364724-6364743 | None:intergenic | 45.0% | |
GAGATGAAGGAGGGATAAAG+AGG | + | chr6.4:6360765-6360784 | MS.gene070857:CDS | 45.0% | |
GAGCAGAGAACTAATACAGC+AGG | + | chr6.4:6365858-6365877 | MS.gene070857:CDS | 45.0% | |
GAGGAGTTTGTCTGGTCTAT+CGG | + | chr6.4:6363377-6363396 | MS.gene070857:intron | 45.0% | |
GATAGACCAGACAAACTCCT+CGG | - | chr6.4:6363378-6363397 | None:intergenic | 45.0% | |
GATCTCTCAAGGTGCATCTA+AGG | + | chr6.4:6366527-6366546 | MS.gene070857:CDS | 45.0% | |
GATTGAAAATGGGAGGAGTG+TGG | + | chr6.4:6360730-6360749 | MS.gene070857:CDS | 45.0% | |
GCAGTAACAACATTGGGTAG+AGG | + | chr6.4:6364309-6364328 | MS.gene070857:CDS | 45.0% | |
GCTGTTGCAAAGAGATTGCA+TGG | + | chr6.4:6364106-6364125 | MS.gene070857:CDS | 45.0% | |
GGAATATCACCTTCTCTAGC+AGG | - | chr6.4:6365407-6365426 | None:intergenic | 45.0% | |
GGAGAAAAAGCTGTGAGTTG+CGG | + | chr6.4:6362567-6362586 | MS.gene070857:CDS | 45.0% | |
GTAACAACATTGGGTAGAGG+TGG | + | chr6.4:6364312-6364331 | MS.gene070857:CDS | 45.0% | |
GTGAGAGTCTTCAAAATGCG+AGG | - | chr6.4:6361659-6361678 | None:intergenic | 45.0% | |
GTGTTAAGCAAGACTTGGAC+AGG | + | chr6.4:6365538-6365557 | MS.gene070857:intron | 45.0% | |
GTTGAGGAAGAAGGAGATGA+AGG | + | chr6.4:6360752-6360771 | MS.gene070857:CDS | 45.0% | |
TAGATTTGTCGGTGGTGATC+AGG | + | chr6.4:6364878-6364897 | MS.gene070857:intron | 45.0% | |
TATGCACAAACCTGGATCTC+AGG | - | chr6.4:6364381-6364400 | None:intergenic | 45.0% | |
TCAGTACGGTTTCCTTGCTA+AGG | + | chr6.4:6365660-6365679 | MS.gene070857:CDS | 45.0% | |
TCGCCAGGTGAATATCTCAT+TGG | + | chr6.4:6366668-6366687 | MS.gene070857:intron | 45.0% | |
TCTATGAGACCTGCTAGAGA+AGG | + | chr6.4:6365395-6365414 | MS.gene070857:CDS | 45.0% | |
TGAGGCAGAGGAATGTGTAA+GGG | + | chr6.4:6366704-6366723 | MS.gene070857:CDS | 45.0% | |
TGCAAGGGTGAAATCCATCA+TGG | - | chr6.4:6363499-6363518 | None:intergenic | 45.0% | |
TGCAATCTCTTTGCAACAGC+CGG | - | chr6.4:6364106-6364125 | None:intergenic | 45.0% | |
TGGTTATCTGCACGGTTGAA+TGG | + | chr6.4:6364688-6364707 | MS.gene070857:intron | 45.0% | |
TGTAAACCGAGGAGTTTGTC+TGG | + | chr6.4:6363369-6363388 | MS.gene070857:intron | 45.0% | |
TGTGACCAGTGTTACAAGCT+TGG | - | chr6.4:6363428-6363447 | None:intergenic | 45.0% | |
TGTTGTCGTTGAATGCGTTC+CGG | + | chr6.4:6365712-6365731 | MS.gene070857:intron | 45.0% | |
TTCAACCACTTACGCAGGTA+TGG | + | chr6.4:6364450-6364469 | MS.gene070857:intron | 45.0% | |
TTGTTTACCCTGGATCCCTT+GGG | + | chr6.4:6366301-6366320 | MS.gene070857:intron | 45.0% | |
TTTCGTGTTCTTCGAACCCT+TGG | + | chr6.4:6366489-6366508 | MS.gene070857:CDS | 45.0% | |
TTTGTTTACCCTGGATCCCT+TGG | + | chr6.4:6366300-6366319 | MS.gene070857:intron | 45.0% | |
! | AGTGGTGGAAGAAGAAGGTT+AGG | - | chr6.4:6360605-6360624 | None:intergenic | 45.0% |
! | CAGTACGACGCATTTGAGAT+TGG | + | chr6.4:6364028-6364047 | MS.gene070857:intron | 45.0% |
! | CCCCTTTTTGACATTTGACG+AGG | + | chr6.4:6364532-6364551 | MS.gene070857:CDS | 45.0% |
! | CTTTGATGGATCCAACGTCA+AGG | - | chr6.4:6365833-6365852 | None:intergenic | 45.0% |
! | GATGAAGTTTGGTGGTTCGT+CGG | + | chr6.4:6360802-6360821 | MS.gene070857:CDS | 45.0% |
! | GCACTGGAGCAACTTTTGAA+TGG | + | chr6.4:6363724-6363743 | MS.gene070857:CDS | 45.0% |
! | GTTGGAGTTGGTTATCTGCA+CGG | + | chr6.4:6364680-6364699 | MS.gene070857:intron | 45.0% |
! | TTATGAGTTTTCCGGAGGAG+AGG | + | chr6.4:6360864-6360883 | MS.gene070857:CDS | 45.0% |
!! | CATGTTTGGGTGGTGTTGAT+TGG | + | chr6.4:6362214-6362233 | MS.gene070857:intron | 45.0% |
!! | GATCCACAGTTCTGAAATGC+AGG | - | chr6.4:6362752-6362771 | None:intergenic | 45.0% |
!! | GCAATTGTTACTGGCTTCCT+TGG | + | chr6.4:6364154-6364173 | MS.gene070857:CDS | 45.0% |
!! | TGCGGTGTTACTAATGTCTC+TGG | + | chr6.4:6362585-6362604 | MS.gene070857:CDS | 45.0% |
!! | TGTTACTGGCTTCCTTGGAA+AGG | + | chr6.4:6364159-6364178 | MS.gene070857:CDS | 45.0% |
!!! | GGTCTAATTTTTGGCACCTC+TGG | + | chr6.4:6364931-6364950 | MS.gene070857:intron | 45.0% |
!!! | TGCTAGCTGCACCTCTTTTT+TGG | + | chr6.4:6365157-6365176 | MS.gene070857:intron | 45.0% |
AAGGGGACAGGTTCTGCTTT+CGG | - | chr6.4:6364518-6364537 | None:intergenic | 50.0% | |
ACCACTTACGCAGGTATGGA+AGG | + | chr6.4:6364454-6364473 | MS.gene070857:intron | 50.0% | |
ACTCGCATGCTTGGTCAGTA+CGG | + | chr6.4:6365646-6365665 | MS.gene070857:CDS | 50.0% | |
ACTGCTCTTACCTGAGATGC+AGG | - | chr6.4:6362638-6362657 | None:intergenic | 50.0% | |
AGGCACATCTGGTGTCTGAT+AGG | + | chr6.4:6361878-6361897 | MS.gene070857:intron | 50.0% | |
ATAGTGAGCACTCGCATGCT+TGG | + | chr6.4:6365637-6365656 | MS.gene070857:CDS | 50.0% | |
CAAGATCAACAGTGCCCCAA+GGG | - | chr6.4:6366319-6366338 | None:intergenic | 50.0% | |
CGGATGCAGAACCTGTGAAT+CGG | - | chr6.4:6365372-6365391 | None:intergenic | 50.0% | |
CGTTGGATCCATCAAAGCTC+TGG | + | chr6.4:6365836-6365855 | MS.gene070857:CDS | 50.0% | |
CTAGCAGGTCTCATAGACTG+CGG | - | chr6.4:6365392-6365411 | None:intergenic | 50.0% | |
GAAGGTCACGTGCAATGTGT+TGG | + | chr6.4:6360697-6360716 | MS.gene070857:CDS | 50.0% | |
GAGGAAGAAGGAGATGAAGG+AGG | + | chr6.4:6360755-6360774 | MS.gene070857:CDS | 50.0% | |
GATGCAGAACCTGTGAATCG+GGG | - | chr6.4:6365370-6365389 | None:intergenic | 50.0% | |
GGATGCAGAACCTGTGAATC+GGG | - | chr6.4:6365371-6365390 | None:intergenic | 50.0% | |
GTGAGGCAGAGGAATGTGTA+AGG | + | chr6.4:6366703-6366722 | MS.gene070857:CDS | 50.0% | |
TCAAGATCAACAGTGCCCCA+AGG | - | chr6.4:6366320-6366339 | None:intergenic | 50.0% | |
TCCTTCCATACCTGCGTAAG+TGG | - | chr6.4:6364458-6364477 | None:intergenic | 50.0% | |
TGTTTACCCTGGATCCCTTG+GGG | + | chr6.4:6366302-6366321 | MS.gene070857:intron | 50.0% | |
TTCCTACAACCCGAAAGCTC+CGG | + | chr6.4:6365442-6365461 | MS.gene070857:CDS | 50.0% | |
! | AAATGGGAGGAGTGTGGTTG+AGG | + | chr6.4:6360736-6360755 | MS.gene070857:CDS | 50.0% |
! | AGGAGTGTGGTTGAGGAAGA+AGG | + | chr6.4:6360743-6360762 | MS.gene070857:CDS | 50.0% |
! | GCTGCTGAGCTAGCTTACTT+TGG | + | chr6.4:6364554-6364573 | MS.gene070857:CDS | 50.0% |
! | TCTATGCTGATGATGCCACG+TGG | - | chr6.4:6360630-6360649 | None:intergenic | 50.0% |
! | TCTCTGCTCCAGAGCTTTGA+TGG | - | chr6.4:6365847-6365866 | None:intergenic | 50.0% |
! | TTGGAGAGTGCATGTCCACT+AGG | + | chr6.4:6363800-6363819 | MS.gene070857:CDS | 50.0% |
!! | GAGAGGATGATGGAAGTTGC+TGG | + | chr6.4:6360836-6360855 | MS.gene070857:CDS | 50.0% |
!! | GCTAGCTTACTTTGGTGCTC+AGG | + | chr6.4:6364562-6364581 | MS.gene070857:CDS | 50.0% |
!!! | ACCTTCACCGCCGCTTTTTT+CGG | - | chr6.4:6360683-6360702 | None:intergenic | 50.0% |
ACAACAATCGGCCTCTCCTC+CGG | - | chr6.4:6360878-6360897 | None:intergenic | 55.0% | |
AGGGGACAGGTTCTGCTTTC+GGG | - | chr6.4:6364517-6364536 | None:intergenic | 55.0% | |
TCCAGTGCTTCCAGATGCTC+TGG | - | chr6.4:6363712-6363731 | None:intergenic | 55.0% | |
TCCGAAAAAAGCGGCGGTGA+AGG | + | chr6.4:6360679-6360698 | MS.gene070857:CDS | 55.0% | |
TCCTACAACCCGAAAGCTCC+GGG | + | chr6.4:6365443-6365462 | MS.gene070857:CDS | 55.0% | |
! | TCCAGAGCATCTGGAAGCAC+TGG | + | chr6.4:6363708-6363727 | MS.gene070857:intron | 55.0% |
! | TGGCGAGTGGTGGAAGAAGA+AGG | - | chr6.4:6360610-6360629 | None:intergenic | 55.0% |
!! | ATGAGAGTGCCCGGAGCTTT+CGG | - | chr6.4:6365455-6365474 | None:intergenic | 55.0% |
!! | TCCTTGGTGATGAGAGTGCC+CGG | - | chr6.4:6365464-6365483 | None:intergenic | 55.0% |
AACAGTGCCCCAAGGGATCC+AGG | - | chr6.4:6366312-6366331 | None:intergenic | 60.0% | |
ACAGTGCCCCAAGGGATCCA+GGG | - | chr6.4:6366311-6366330 | None:intergenic | 60.0% | |
TCCGGGCACTCTCATCACCA+AGG | + | chr6.4:6365460-6365479 | MS.gene070857:CDS | 60.0% | |
TTCTTCCACCACTCGCCACG+TGG | + | chr6.4:6360612-6360631 | MS.gene070857:CDS | 60.0% | |
! | TGATGATGCCACGTGGCGAG+TGG | - | chr6.4:6360623-6360642 | None:intergenic | 60.0% |
! | TGGTGGTTCGTCGGTTGCGT+CGG | + | chr6.4:6360811-6360830 | MS.gene070857:CDS | 60.0% |
!! | TGAGAGTGCCCGGAGCTTTC+GGG | - | chr6.4:6365454-6365473 | None:intergenic | 60.0% |
TGATGCCACGTGGCGAGTGG+TGG | - | chr6.4:6360620-6360639 | None:intergenic | 65.0% | |
! | TGCGTCGGCGGAGAGGATGA+TGG | + | chr6.4:6360826-6360845 | MS.gene070857:CDS | 65.0% |
! | TGGTTCGTCGGTTGCGTCGG+CGG | + | chr6.4:6360814-6360833 | MS.gene070857:CDS | 65.0% |
!! | GCCCGGAGCTTTCGGGTTGT+AGG | - | chr6.4:6365447-6365466 | None:intergenic | 65.0% |
! | CGTCGGTTGCGTCGGCGGAG+AGG | + | chr6.4:6360819-6360838 | MS.gene070857:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 6360489 | 6366815 | 6360489 | ID=MS.gene070857 |
chr6.4 | mRNA | 6360489 | 6366815 | 6360489 | ID=MS.gene070857.t1;Parent=MS.gene070857 |
chr6.4 | exon | 6360489 | 6360937 | 6360489 | ID=MS.gene070857.t1.exon1;Parent=MS.gene070857.t1 |
chr6.4 | CDS | 6360489 | 6360937 | 6360489 | ID=cds.MS.gene070857.t1;Parent=MS.gene070857.t1 |
chr6.4 | exon | 6362564 | 6362646 | 6362564 | ID=MS.gene070857.t1.exon2;Parent=MS.gene070857.t1 |
chr6.4 | CDS | 6362564 | 6362646 | 6362564 | ID=cds.MS.gene070857.t1;Parent=MS.gene070857.t1 |
chr6.4 | exon | 6362761 | 6362801 | 6362761 | ID=MS.gene070857.t1.exon3;Parent=MS.gene070857.t1 |
chr6.4 | CDS | 6362761 | 6362801 | 6362761 | ID=cds.MS.gene070857.t1;Parent=MS.gene070857.t1 |
chr6.4 | exon | 6363713 | 6363867 | 6363713 | ID=MS.gene070857.t1.exon4;Parent=MS.gene070857.t1 |
chr6.4 | CDS | 6363713 | 6363867 | 6363713 | ID=cds.MS.gene070857.t1;Parent=MS.gene070857.t1 |
chr6.4 | exon | 6364031 | 6364180 | 6364031 | ID=MS.gene070857.t1.exon5;Parent=MS.gene070857.t1 |
chr6.4 | CDS | 6364031 | 6364180 | 6364031 | ID=cds.MS.gene070857.t1;Parent=MS.gene070857.t1 |
chr6.4 | exon | 6364294 | 6364389 | 6364294 | ID=MS.gene070857.t1.exon6;Parent=MS.gene070857.t1 |
chr6.4 | CDS | 6364294 | 6364389 | 6364294 | ID=cds.MS.gene070857.t1;Parent=MS.gene070857.t1 |
chr6.4 | exon | 6364467 | 6364583 | 6364467 | ID=MS.gene070857.t1.exon7;Parent=MS.gene070857.t1 |
chr6.4 | CDS | 6364467 | 6364583 | 6364467 | ID=cds.MS.gene070857.t1;Parent=MS.gene070857.t1 |
chr6.4 | exon | 6365380 | 6365499 | 6365380 | ID=MS.gene070857.t1.exon8;Parent=MS.gene070857.t1 |
chr6.4 | CDS | 6365380 | 6365499 | 6365380 | ID=cds.MS.gene070857.t1;Parent=MS.gene070857.t1 |
chr6.4 | exon | 6365589 | 6365681 | 6365589 | ID=MS.gene070857.t1.exon9;Parent=MS.gene070857.t1 |
chr6.4 | CDS | 6365589 | 6365681 | 6365589 | ID=cds.MS.gene070857.t1;Parent=MS.gene070857.t1 |
chr6.4 | exon | 6365763 | 6365879 | 6365763 | ID=MS.gene070857.t1.exon10;Parent=MS.gene070857.t1 |
chr6.4 | CDS | 6365763 | 6365879 | 6365763 | ID=cds.MS.gene070857.t1;Parent=MS.gene070857.t1 |
chr6.4 | exon | 6366050 | 6366166 | 6366050 | ID=MS.gene070857.t1.exon11;Parent=MS.gene070857.t1 |
chr6.4 | CDS | 6366050 | 6366166 | 6366050 | ID=cds.MS.gene070857.t1;Parent=MS.gene070857.t1 |
chr6.4 | exon | 6366486 | 6366548 | 6366486 | ID=MS.gene070857.t1.exon12;Parent=MS.gene070857.t1 |
chr6.4 | CDS | 6366486 | 6366548 | 6366486 | ID=cds.MS.gene070857.t1;Parent=MS.gene070857.t1 |
chr6.4 | exon | 6366675 | 6366815 | 6366675 | ID=MS.gene070857.t1.exon13;Parent=MS.gene070857.t1 |
chr6.4 | CDS | 6366675 | 6366815 | 6366675 | ID=cds.MS.gene070857.t1;Parent=MS.gene070857.t1 |
Gene Sequence |
Protein sequence |