AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058752


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058752.t1 MTR_3g005210 93.478 322 5 1 1 306 1 322 0.0 609
MS.gene058752.t1 MTR_3g005170 86.250 320 28 1 3 306 7 326 0.0 563
MS.gene058752.t1 MTR_3g005170 86.139 303 27 1 4 306 8 295 0.0 529
MS.gene058752.t1 MTR_3g005170 86.081 273 22 1 3 259 7 279 1.31e-172 479
MS.gene058752.t1 MTR_8g062440 67.925 318 85 2 5 306 7 323 4.75e-160 449
MS.gene058752.t1 MTR_8g062440 67.712 319 85 3 5 306 7 324 5.51e-158 444
MS.gene058752.t1 MTR_8g062110 66.352 318 90 2 5 306 8 324 7.04e-156 438
MS.gene058752.t1 MTR_8g062110 66.352 318 90 2 5 306 17 333 8.39e-156 439
MS.gene058752.t1 MTR_4g077100 63.522 318 100 1 5 306 10 327 3.65e-154 434
MS.gene058752.t1 MTR_4g077130 62.462 325 103 2 1 306 1 325 7.91e-152 428
MS.gene058752.t1 MTR_8g062440 67.159 271 72 2 5 259 7 276 1.67e-129 372
MS.gene058752.t1 MTR_4g077100 63.100 271 84 1 5 259 10 280 8.20e-128 365
MS.gene058752.t1 MTR_8g062110 64.945 271 78 2 5 259 8 277 2.57e-127 365
MS.gene058752.t1 MTR_8g062110 64.945 271 78 2 5 259 8 277 2.63e-127 364
MS.gene058752.t1 MTR_8g062110 69.298 228 69 1 79 306 12 238 1.18e-114 331
MS.gene058752.t1 MTR_4g006940 47.419 310 146 6 6 301 17 323 8.63e-89 268
MS.gene058752.t1 MTR_5g072620 44.720 322 156 5 3 305 2 320 2.72e-88 266
MS.gene058752.t1 MTR_8g062110 67.956 181 57 1 79 259 12 191 4.60e-86 256
MS.gene058752.t1 MTR_2g104960 44.375 320 161 6 1 306 15 331 5.50e-84 256
MS.gene058752.t1 MTR_3g031650 40.810 321 168 5 3 304 2 319 2.54e-80 246
MS.gene058752.t1 MTR_5g056600 38.801 317 173 5 7 304 5 319 5.58e-79 243
MS.gene058752.t1 MTR_2g101330 41.139 316 162 6 6 301 5 316 2.41e-78 241
MS.gene058752.t1 MTR_1g022440 39.252 321 170 6 3 301 5 322 4.91e-76 236
MS.gene058752.t1 MTR_0685s0030 63.415 164 60 0 143 306 1 164 1.89e-75 228
MS.gene058752.t1 MTR_4g006940 47.566 267 124 5 6 259 17 280 2.04e-74 230
MS.gene058752.t1 MTR_4g006940 47.566 267 124 5 6 259 17 280 2.04e-74 230
MS.gene058752.t1 MTR_3g031650 42.751 269 132 5 3 252 2 267 5.48e-71 221
MS.gene058752.t1 MTR_4g009040 40.252 318 164 7 2 300 9 319 1.45e-70 221
MS.gene058752.t1 MTR_4g009040 39.752 322 164 7 2 300 9 323 6.48e-70 220
MS.gene058752.t1 MTR_1g022445 37.576 330 173 8 3 304 5 329 1.60e-69 219
MS.gene058752.t1 MTR_4g009690 40.379 317 164 6 2 300 9 318 4.87e-63 202
MS.gene058752.t1 MTR_2g028620 37.538 325 173 9 5 305 9 327 5.42e-62 200
MS.gene058752.t1 MTR_4g009690 40.252 318 164 7 2 300 9 319 3.67e-61 197
MS.gene058752.t1 MTR_4g092080 36.957 322 171 8 7 299 15 333 1.35e-57 189
MS.gene058752.t1 MTR_7g074880 34.862 327 177 9 6 304 8 326 1.86e-55 182
MS.gene058752.t1 MTR_3g011130 77.586 116 25 1 81 195 30 145 3.78e-55 176
MS.gene058752.t1 MTR_7g074820 35.474 327 178 9 6 304 8 329 1.73e-54 180
MS.gene058752.t1 MTR_2g028620 40.590 271 131 9 5 251 9 273 8.31e-54 178
MS.gene058752.t1 MTR_4g081440 37.003 327 162 11 7 295 25 345 3.66e-53 177
MS.gene058752.t1 MTR_7g074730 34.969 326 180 9 6 304 8 328 4.19e-53 177
MS.gene058752.t1 MTR_4g081440 36.697 327 162 11 7 295 21 340 9.19e-53 176
MS.gene058752.t1 MTR_7g074850 34.557 327 181 9 6 304 8 329 1.08e-52 176
MS.gene058752.t1 MTR_0685s0030 62.393 117 44 0 143 259 1 117 3.64e-49 159
MS.gene058752.t1 MTR_7g074710 35.294 272 152 6 6 256 8 276 4.66e-45 155
MS.gene058752.t1 MTR_4g077150 40.553 217 74 6 62 276 2 165 1.08e-42 145
MS.gene058752.t1 MTR_4g023730 33.571 280 156 7 2 256 4 278 1.06e-38 139
MS.gene058752.t1 MTR_7g074870 31.597 288 168 9 41 304 6 288 1.65e-35 130
MS.gene058752.t1 MTR_0164s0070 48.413 126 48 1 6 114 5 130 3.02e-33 121
MS.gene058752.t1 MTR_5g029990 27.869 305 184 8 1 284 7 296 3.26e-33 124
MS.gene058752.t1 MTR_1g099230 91.935 62 5 0 81 142 36 97 5.05e-32 117
MS.gene058752.t1 MTR_6g406250 31.111 270 157 8 5 250 54 318 2.58e-31 120
MS.gene058752.t1 MTR_6g406250 32.821 195 107 5 5 178 54 245 1.04e-26 105
MS.gene058752.t1 MTR_2g013250 29.758 289 168 6 6 259 7 295 1.60e-26 107
MS.gene058752.t1 MTR_2g013230 29.758 289 168 7 6 259 8 296 6.39e-25 102
MS.gene058752.t1 MTR_7g117190 30.640 297 162 11 6 262 7 299 1.66e-23 99.0
MS.gene058752.t1 MTR_2g013260 30.034 293 162 7 6 259 8 296 2.16e-23 97.8
MS.gene058752.t1 MTR_7g117190 30.032 313 170 12 6 278 7 310 3.69e-23 97.4
MS.gene058752.t1 MTR_2g013260 30.034 293 162 7 6 259 8 296 6.84e-23 97.4
MS.gene058752.t1 MTR_8g062490 58.000 50 21 0 211 260 68 117 3.40e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058752.t1 AT5G19440 71.384 318 75 1 5 306 9 326 6.76e-168 469
MS.gene058752.t1 AT1G51410 68.770 317 83 1 6 306 9 325 2.39e-165 462
MS.gene058752.t1 AT1G09510 50.470 319 142 1 2 304 4 322 2.52e-109 320
MS.gene058752.t1 AT1G66800 51.118 313 133 2 5 301 7 315 8.41e-103 303
MS.gene058752.t1 AT1G09480 48.882 313 144 1 5 301 7 319 4.09e-102 302
MS.gene058752.t1 AT1G09490 48.562 313 145 1 5 301 7 319 9.05e-102 301
MS.gene058752.t1 AT1G09480 48.882 313 144 1 5 301 54 366 1.14e-101 303
MS.gene058752.t1 AT1G09500 48.903 319 144 3 5 304 7 325 3.42e-101 300
MS.gene058752.t1 AT1G09500 50.000 272 119 1 5 259 7 278 2.24e-92 276
MS.gene058752.t1 AT4G35420 44.654 318 155 5 6 305 8 322 7.83e-91 273
MS.gene058752.t1 AT1G15950 46.326 313 151 6 3 301 10 319 2.83e-84 257
MS.gene058752.t1 AT1G15950 46.326 313 151 6 3 301 10 319 2.83e-84 257
MS.gene058752.t1 AT5G58490 43.125 320 160 5 5 305 8 324 1.23e-82 253
MS.gene058752.t1 AT1G15950 45.752 306 149 6 3 294 10 312 1.20e-80 248
MS.gene058752.t1 AT1G80820 44.127 315 159 6 1 301 3 314 7.51e-80 246
MS.gene058752.t1 AT1G09500 45.296 287 138 3 37 304 5 291 2.32e-79 243
MS.gene058752.t1 AT1G09490 44.444 279 139 1 39 301 10 288 4.97e-79 242
MS.gene058752.t1 AT2G02400 37.963 324 175 7 1 304 1 318 8.98e-74 229
MS.gene058752.t1 AT1G15950 47.037 270 127 5 3 259 10 276 5.09e-72 224
MS.gene058752.t1 AT1G15950 46.403 278 132 6 3 267 10 283 9.44e-72 224
MS.gene058752.t1 AT1G15950 47.547 265 123 5 6 257 13 274 2.79e-71 222
MS.gene058752.t1 AT1G68540 38.435 294 161 4 8 282 6 298 7.95e-71 222
MS.gene058752.t1 AT1G80820 44.485 272 135 5 1 259 3 271 2.73e-66 209
MS.gene058752.t1 AT5G42800 37.383 321 176 6 6 304 8 325 4.58e-64 207
MS.gene058752.t1 AT2G33590 39.185 319 169 6 6 305 9 321 3.26e-63 202
MS.gene058752.t1 AT1G25460 38.225 293 161 5 8 282 6 296 3.67e-62 200
MS.gene058752.t1 AT2G33600 40.062 322 162 8 6 305 9 321 8.70e-59 191
MS.gene058752.t1 AT1G76470 40.252 318 159 9 6 299 7 317 3.00e-58 190
MS.gene058752.t1 AT1G15950 44.395 223 120 4 81 301 1 221 2.05e-52 172
MS.gene058752.t1 AT1G61720 34.356 326 180 7 3 300 10 329 1.64e-51 173
MS.gene058752.t1 AT4G27250 33.232 328 182 9 7 303 14 335 1.74e-46 160
MS.gene058752.t1 AT4G27250 33.234 337 180 11 7 303 14 345 3.22e-46 159
MS.gene058752.t1 AT2G45400 32.573 307 182 5 3 284 37 343 2.43e-43 152
MS.gene058752.t1 AT2G45400 33.571 280 161 5 3 257 37 316 2.67e-43 151
MS.gene058752.t1 AT1G68540 38.021 192 116 3 93 282 1 191 1.84e-41 143
MS.gene058752.t1 AT2G23910 29.478 268 170 5 7 259 11 274 8.26e-41 143
MS.gene058752.t1 AT2G23910 29.699 266 168 5 7 257 11 272 9.81e-41 143
MS.gene058752.t1 AT2G23910 29.478 268 170 5 7 259 11 274 1.37e-40 144
MS.gene058752.t1 AT4G30470 29.412 272 174 5 2 259 6 273 2.75e-39 140
MS.gene058752.t1 AT2G45400 36.073 219 117 4 3 198 37 255 1.04e-35 129
MS.gene058752.t1 AT2G23910 28.761 226 142 5 49 259 19 240 1.51e-30 116
MS.gene058752.t1 AT2G45400 29.259 270 168 4 38 284 17 286 2.65e-27 108
MS.gene058752.t1 AT5G14700 25.965 285 178 10 5 262 54 332 3.71e-25 103
MS.gene058752.t1 AT5G14700 27.397 219 132 7 2 197 51 265 1.08e-20 90.1

Find 64 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGAAAAGGCAATGAGTT+TGG 0.216710 3.1:+573763 MS.gene058752:CDS
CTAGGGAGATACGTTTAATT+TGG 0.229039 3.1:-572130 None:intergenic
ACCCATCCCAAAGTAGAATT+TGG 0.245483 3.1:-572868 None:intergenic
CATTCTCGTATGCCAGAATA+TGG 0.267945 3.1:-572915 None:intergenic
GCAATTCTAAACCTGATTAA+TGG 0.275531 3.1:+572573 MS.gene058752:CDS
AATTATTAATCTTACTTCTC+TGG 0.299337 3.1:-573033 None:intergenic
TAAAGAAAACAACATTGATA+TGG 0.308617 3.1:+572485 MS.gene058752:CDS
AACATTTCCAAATTCTACTT+TGG 0.318580 3.1:+572861 MS.gene058752:CDS
TTGCAGCAGCACTTGTGTTT+AGG 0.321177 3.1:-572554 None:intergenic
TGTTGCAAATGCCCATATTC+TGG 0.323215 3.1:+572903 MS.gene058752:CDS
GTAATTAATTACCATTAATC+AGG 0.328588 3.1:-572584 None:intergenic
CAAGGCAAATCTACTTGAAC+AGG 0.339055 3.1:+571843 MS.gene058752:CDS
GCCTTTGATTCTGCTGTTCA+AGG 0.346135 3.1:+571868 MS.gene058752:CDS
ATTAACCCAGCAATGGTCAT+AGG 0.359026 3.1:+572513 MS.gene058752:CDS
AAAGAAAAGGCAATGAGTTT+GGG 0.369837 3.1:+573764 MS.gene058752:CDS
AACTGATATGTAGGCACATA+TGG 0.371044 3.1:-573737 None:intergenic
AGCTAGTGGAAGACATTGTT+TGG 0.373238 3.1:+572942 MS.gene058752:CDS
AGCAACGTTGTGTGTGTAAC+TGG 0.375079 3.1:+571468 MS.gene058752:CDS
ACCAAGTGGTTGATCTTCTT+CGG 0.375522 3.1:-571784 None:intergenic
ACATTTCCAAATTCTACTTT+GGG 0.382077 3.1:+572862 MS.gene058752:CDS
AGAGGCCCTATGACCATTGC+TGG 0.404733 3.1:-572519 None:intergenic
ATTATTAATCTTACTTCTCT+GGG 0.410205 3.1:-573032 None:intergenic
GGGAATTGAATATACTCCTT+TGG 0.411555 3.1:+573784 MS.gene058752:CDS
ACGTTTCAGTGATGGCGATT+TGG 0.412461 3.1:-572004 None:intergenic
GTGTGTGTAACTGGCGCTTC+AGG 0.413471 3.1:+571477 MS.gene058752:CDS
AACCACTTGGTTAAGCTTGA+AGG 0.417225 3.1:+571796 MS.gene058752:CDS
CTTCAGGTTACATAGCTTCA+TGG 0.422476 3.1:+571493 MS.gene058752:CDS
TCTTTGGAAAACTGATATGT+AGG 0.433529 3.1:-573746 None:intergenic
TCCAAATTCTACTTTGGGAT+GGG 0.448702 3.1:+572867 MS.gene058752:CDS
GGAGAGATTACAATTATTCA+AGG 0.452632 3.1:+571825 MS.gene058752:CDS
CGCAACAGCAGCAGCAGAAG+AGG 0.476034 3.1:-572037 None:intergenic
TTCCAAATTCTACTTTGGGA+TGG 0.486039 3.1:+572866 MS.gene058752:CDS
GTCTCGTCAACAACAACATC+AGG 0.489728 3.1:-572081 None:intergenic
TCCTTGATGCTCACTTCCAA+AGG 0.501654 3.1:-573800 None:intergenic
TTTAGGACTGGTTGCAAGAG+AGG 0.512693 3.1:-572537 None:intergenic
GCAGCACTTGTGTTTAGGAC+TGG 0.518349 3.1:-572549 None:intergenic
TACGAGAATGCTTCAGCTAG+TGG 0.518867 3.1:+572928 MS.gene058752:CDS
TCTGCTGTTCAAGGCTGTCA+AGG 0.530516 3.1:+571877 MS.gene058752:CDS
GGTTAAGCTTGAAGGTGCTA+AGG 0.535332 3.1:+571804 MS.gene058752:CDS
ATGTTGTTGTTGACGAGACT+TGG 0.540828 3.1:+572085 MS.gene058752:CDS
TTAACCCAGCAATGGTCATA+GGG 0.542832 3.1:+572514 MS.gene058752:CDS
ATTCTCGTATGCCAGAATAT+GGG 0.546372 3.1:-572914 None:intergenic
GCCTTGAACAGCAGAATCAA+AGG 0.555036 3.1:-571869 None:intergenic
AAGACAACACGTTTCAGTGA+TGG 0.558880 3.1:-572012 None:intergenic
TTGAGAGTACCGTTGAGTGC+AGG 0.577644 3.1:-571964 None:intergenic
CACCTTCAAGCTTAACCAAG+TGG 0.579342 3.1:-571798 None:intergenic
CATTGGCTGAAGAAGCTGCA+TGG 0.580278 3.1:+572454 MS.gene058752:CDS
TGACTTACTTGGGTCGCGAA+CGG 0.581536 3.1:-571559 None:intergenic
CAGTGTAACCACGATGGAGA+AGG 0.586371 3.1:-571527 None:intergenic
CTTACTTGGGTCGCGAACGG+TGG 0.590707 3.1:-571556 None:intergenic
TTCTCTGGGAGTTGCAACGA+AGG 0.598543 3.1:-573018 None:intergenic
TCCTTTGGAAGTGAGCATCA+AGG 0.611448 3.1:+573799 MS.gene058752:CDS
TCCGAAGAAGATCAACCACT+TGG 0.626562 3.1:+571783 MS.gene058752:CDS
ACAACAACATCAGGAGTTCG+AGG 0.628925 3.1:-572072 None:intergenic
GAGGCCCTATGACCATTGCT+GGG 0.631385 3.1:-572518 None:intergenic
GGTTACTATTAACCCAGCAA+TGG 0.635018 3.1:+572506 MS.gene058752:CDS
TTGATTGATCCTGCACTCAA+CGG 0.644648 3.1:+571955 MS.gene058752:CDS
GTTCGTTTCCTTCTCCATCG+TGG 0.644846 3.1:+571519 MS.gene058752:CDS
ACTGTTTCAGCTGTGGTATG+CGG 0.647792 3.1:+572422 MS.gene058752:intron
TCTCTGGGAGTTGCAACGAA+GGG 0.653512 3.1:-573017 None:intergenic
TATATATGTTACCAGGTGTG+CGG 0.694634 3.1:+573706 MS.gene058752:intron
CTTTAACAGTGTAACCACGA+TGG 0.707935 3.1:-571533 None:intergenic
GTATGCGGTTTCGAAAACAT+TGG 0.716031 3.1:+572437 MS.gene058752:CDS
AAGGCAAATCTACTTGAACA+GGG 0.722044 3.1:+571844 MS.gene058752:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATCAAATCAAACAT+AGG - chr3.1:571747-571766 None:intergenic 15.0%
!! ATTTATTACATGATTAATCA+TGG - chr3.1:572362-572381 None:intergenic 15.0%
!! TAATAATCAAATCAAACATA+GGG - chr3.1:571746-571765 None:intergenic 15.0%
!! TATAAATGTAAATACAGAAA+TGG - chr3.1:573632-573651 None:intergenic 15.0%
!! TATTTAATACATACAGAAAA+AGG + chr3.1:573215-573234 MS.gene058752:intron 15.0%
!!! AATTAAGTGTTTCTAAAATA+AGG + chr3.1:573508-573527 MS.gene058752:intron 15.0%
!!! TATGTTTGATTTGATTATTA+TGG + chr3.1:571746-571765 MS.gene058752:intron 15.0%
!! AATTATTAATCTTACTTCTC+TGG - chr3.1:573036-573055 None:intergenic 20.0%
!! ATTATTAATCTTACTTCTCT+GGG - chr3.1:573035-573054 None:intergenic 20.0%
!! CCATTACAATAAAACAAAAA+TGG - chr3.1:572609-572628 None:intergenic 20.0%
!! GAAAAATTTCAACAATTTAG+AGG + chr3.1:573257-573276 MS.gene058752:intron 20.0%
!! GTAATTAATTACCATTAATC+AGG - chr3.1:572587-572606 None:intergenic 20.0%
!! TAAAATTCAATAAGCAACAA+TGG - chr3.1:572716-572735 None:intergenic 20.0%
!! TAAAGAAAACAACATTGATA+TGG + chr3.1:572485-572504 MS.gene058752:CDS 20.0%
!!! CCATTTTTGTTTTATTGTAA+TGG + chr3.1:572606-572625 MS.gene058752:intron 20.0%
!!! TGCACTTTTTAACATATATT+CGG + chr3.1:573308-573327 MS.gene058752:intron 20.0%
! AACATTTCCAAATTCTACTT+TGG + chr3.1:572861-572880 MS.gene058752:CDS 25.0%
! AAGTATAGCAACTTTAAATG+TGG + chr3.1:573533-573552 MS.gene058752:intron 25.0%
! AATTCAGTGCTAAAAATGAA+AGG + chr3.1:573157-573176 MS.gene058752:intron 25.0%
! ACATTTCCAAATTCTACTTT+GGG + chr3.1:572862-572881 MS.gene058752:CDS 25.0%
! ACGAAAAATTCAGTACAAAT+TGG - chr3.1:573466-573485 None:intergenic 25.0%
! ATGTATTAAATAAACAACCC+TGG - chr3.1:573207-573226 None:intergenic 25.0%
! ATTATGTTCCTAAATGAATG+CGG + chr3.1:573080-573099 MS.gene058752:intron 25.0%
! GGATATTAAACAACATTTGT+AGG - chr3.1:573564-573583 None:intergenic 25.0%
! TAACCATTAACCTATGATTT+CGG - chr3.1:573585-573604 None:intergenic 25.0%
! TACAGAAGACATAAAAATAG+AGG - chr3.1:573421-573440 None:intergenic 25.0%
! TCATATCAAACGAAAATAAC+AGG - chr3.1:572667-572686 None:intergenic 25.0%
! TGTTTAATATCCGAAATCAT+AGG + chr3.1:573572-573591 MS.gene058752:intron 25.0%
!! ACATTTAAAGTTGCTATACT+TGG - chr3.1:573534-573553 None:intergenic 25.0%
!! ATATCAGTTTTCCAAAGAAA+AGG + chr3.1:573751-573770 MS.gene058752:CDS 25.0%
!! GAAACCATGTTTTACATATT+GGG - chr3.1:573342-573361 None:intergenic 25.0%
!! TGAAACCATGTTTTACATAT+TGG - chr3.1:573343-573362 None:intergenic 25.0%
!! TGATTTTGTAAGTTTAGCTA+GGG - chr3.1:572150-572169 None:intergenic 25.0%
AAAGAAAAGGCAATGAGTTT+GGG + chr3.1:573764-573783 MS.gene058752:CDS 30.0%
AATAAGCAACAATGGATGTT+GGG - chr3.1:572708-572727 None:intergenic 30.0%
ATAAGAATCCGCATTCATTT+AGG - chr3.1:573091-573110 None:intergenic 30.0%
CATCACTAATATTTGATCCA+GGG + chr3.1:573187-573206 MS.gene058752:intron 30.0%
GAAGACATAAAAATAGAGGA+AGG - chr3.1:573417-573436 None:intergenic 30.0%
GCAATTCTAAACCTGATTAA+TGG + chr3.1:572573-572592 MS.gene058752:CDS 30.0%
GGAGAGATTACAATTATTCA+AGG + chr3.1:571825-571844 MS.gene058752:CDS 30.0%
GTTTCTATGTGCTTCAAATA+TGG + chr3.1:572766-572785 MS.gene058752:intron 30.0%
TACATGATTAATCATGGCAT+TGG - chr3.1:572356-572375 None:intergenic 30.0%
TATCCGAAATCATAGGTTAA+TGG + chr3.1:573579-573598 MS.gene058752:intron 30.0%
TCATCACTAATATTTGATCC+AGG + chr3.1:573186-573205 MS.gene058752:intron 30.0%
TCTTTGACATCATGATAGAA+GGG - chr3.1:571922-571941 None:intergenic 30.0%
TGTCAACTATATATGTTACC+AGG + chr3.1:573699-573718 MS.gene058752:intron 30.0%
TTTAACATATATTCGGCTTC+TGG + chr3.1:573315-573334 MS.gene058752:intron 30.0%
! AGCAAGGACTAAATTGTTTT+TGG + chr3.1:572228-572247 MS.gene058752:intron 30.0%
! GTGATTTTGTAAGTTTAGCT+AGG - chr3.1:572151-572170 None:intergenic 30.0%
! TCTTTGGAAAACTGATATGT+AGG - chr3.1:573749-573768 None:intergenic 30.0%
!!! TAATGGTTTTGTTCCAATGT+CGG + chr3.1:572314-572333 MS.gene058752:intron 30.0%
AACTGATATGTAGGCACATA+TGG - chr3.1:573740-573759 None:intergenic 35.0%
AAGGCAAATCTACTTGAACA+GGG + chr3.1:571844-571863 MS.gene058752:CDS 35.0%
AATGAATGCGGATTCTTATC+TGG + chr3.1:573092-573111 MS.gene058752:intron 35.0%
AGAGAAGAGAATGACTTACT+TGG - chr3.1:571573-571592 None:intergenic 35.0%
ATAAGCAACAATGGATGTTG+GGG - chr3.1:572707-572726 None:intergenic 35.0%
ATGTTTGTGTACCTGTATCA+AGG - chr3.1:572846-572865 None:intergenic 35.0%
ATTCTCGTATGCCAGAATAT+GGG - chr3.1:572917-572936 None:intergenic 35.0%
CAAAGAAAAGGCAATGAGTT+TGG + chr3.1:573763-573782 MS.gene058752:CDS 35.0%
CAAATATGGTTGTGTTCAAG+AGG + chr3.1:572780-572799 MS.gene058752:intron 35.0%
CAATAAGCAACAATGGATGT+TGG - chr3.1:572709-572728 None:intergenic 35.0%
CACTGAATTGAGTTTCAAAC+AGG - chr3.1:573146-573165 None:intergenic 35.0%
CCATAACATCTTCAATAGCA+AGG + chr3.1:572212-572231 MS.gene058752:intron 35.0%
CTAGGGAGATACGTTTAATT+TGG - chr3.1:572133-572152 None:intergenic 35.0%
GAGAAGAGAATGACTTACTT+GGG - chr3.1:571572-571591 None:intergenic 35.0%
GGGAATTGAATATACTCCTT+TGG + chr3.1:573784-573803 MS.gene058752:CDS 35.0%
GTCTTTGACATCATGATAGA+AGG - chr3.1:571923-571942 None:intergenic 35.0%
TATATATGTTACCAGGTGTG+CGG + chr3.1:573706-573725 MS.gene058752:intron 35.0%
TGGACCCAATATGTAAAACA+TGG + chr3.1:573335-573354 MS.gene058752:intron 35.0%
! CAAACTCATTGCCTTTTCTT+TGG - chr3.1:573765-573784 None:intergenic 35.0%
! TTCACAGATGTTTTGCTACT+GGG + chr3.1:573359-573378 MS.gene058752:intron 35.0%
! TTCCAAATTCTACTTTGGGA+TGG + chr3.1:572866-572885 MS.gene058752:CDS 35.0%
! TTTCACAGATGTTTTGCTAC+TGG + chr3.1:573358-573377 MS.gene058752:intron 35.0%
!! CCTTGCTATTGAAGATGTTA+TGG - chr3.1:572215-572234 None:intergenic 35.0%
!! TCCAAATTCTACTTTGGGAT+GGG + chr3.1:572867-572886 MS.gene058752:CDS 35.0%
AACCACTTGGTTAAGCTTGA+AGG + chr3.1:571796-571815 MS.gene058752:CDS 40.0%
AAGACAACACGTTTCAGTGA+TGG - chr3.1:572015-572034 None:intergenic 40.0%
ACCAAGTGGTTGATCTTCTT+CGG - chr3.1:571787-571806 None:intergenic 40.0%
ACCCATCCCAAAGTAGAATT+TGG - chr3.1:572871-572890 None:intergenic 40.0%
ACGGACATAGACACAAACAT+CGG - chr3.1:571707-571726 None:intergenic 40.0%
AGAGAGCTATTATCTGCAGA+AGG - chr3.1:572818-572837 None:intergenic 40.0%
AGCTAGTGGAAGACATTGTT+TGG + chr3.1:572942-572961 MS.gene058752:CDS 40.0%
ATCTTCTTCGGATCATCTAC+AGG - chr3.1:571775-571794 None:intergenic 40.0%
ATTAACCCAGCAATGGTCAT+AGG + chr3.1:572513-572532 MS.gene058752:CDS 40.0%
CAAGGCAAATCTACTTGAAC+AGG + chr3.1:571843-571862 MS.gene058752:CDS 40.0%
CATTCTCGTATGCCAGAATA+TGG - chr3.1:572918-572937 None:intergenic 40.0%
CTTTAACAGTGTAACCACGA+TGG - chr3.1:571536-571555 None:intergenic 40.0%
GGTTACTATTAACCCAGCAA+TGG + chr3.1:572506-572525 MS.gene058752:CDS 40.0%
GTATGCGGTTTCGAAAACAT+TGG + chr3.1:572437-572456 MS.gene058752:CDS 40.0%
GTGCATAACATGCTAGCTAA+TGG + chr3.1:572297-572316 MS.gene058752:intron 40.0%
TGTTGCAAATGCCCATATTC+TGG + chr3.1:572903-572922 MS.gene058752:CDS 40.0%
TTAACCCAGCAATGGTCATA+GGG + chr3.1:572514-572533 MS.gene058752:CDS 40.0%
TTGATTGATCCTGCACTCAA+CGG + chr3.1:571955-571974 MS.gene058752:CDS 40.0%
TTGCTACTGGGTAACTTGAA+TGG + chr3.1:573371-573390 MS.gene058752:intron 40.0%
! ATGTTGTTGTTGACGAGACT+TGG + chr3.1:572085-572104 MS.gene058752:CDS 40.0%
! CTTCAGGTTACATAGCTTCA+TGG + chr3.1:571493-571512 MS.gene058752:CDS 40.0%
!! GATTAATCATGGCATTGGCA+TGG - chr3.1:572351-572370 None:intergenic 40.0%
ACAACAACATCAGGAGTTCG+AGG - chr3.1:572075-572094 None:intergenic 45.0%
ACTGTTTCAGCTGTGGTATG+CGG + chr3.1:572422-572441 MS.gene058752:intron 45.0%
AGCAACGTTGTGTGTGTAAC+TGG + chr3.1:571468-571487 MS.gene058752:CDS 45.0%
CACCTTCAAGCTTAACCAAG+TGG - chr3.1:571801-571820 None:intergenic 45.0%
CATAGACACAAACATCGGAC+AGG - chr3.1:571702-571721 None:intergenic 45.0%
CATGTTATGCACTAGCGCAT+TGG - chr3.1:572289-572308 None:intergenic 45.0%
CCACAGCTGAAACAGTCAAT+AGG - chr3.1:572418-572437 None:intergenic 45.0%
CTCTCTCACTTCCTTGATAC+AGG + chr3.1:572832-572851 MS.gene058752:intron 45.0%
GATCAATCAACTCAGCCTGA+GGG - chr3.1:571945-571964 None:intergenic 45.0%
GCCTTGAACAGCAGAATCAA+AGG - chr3.1:571872-571891 None:intergenic 45.0%
GCCTTTGATTCTGCTGTTCA+AGG + chr3.1:571868-571887 MS.gene058752:CDS 45.0%
GGGTCAAAACGTATGAAGCA+CGG - chr3.1:571726-571745 None:intergenic 45.0%
GTCTCGTCAACAACAACATC+AGG - chr3.1:572084-572103 None:intergenic 45.0%
TACGAGAATGCTTCAGCTAG+TGG + chr3.1:572928-572947 MS.gene058752:CDS 45.0%
TCATGATGTCAAAGACCCTC+AGG + chr3.1:571927-571946 MS.gene058752:intron 45.0%
TCCGAAGAAGATCAACCACT+TGG + chr3.1:571783-571802 MS.gene058752:CDS 45.0%
TCCTTGATGCTCACTTCCAA+AGG - chr3.1:573803-573822 None:intergenic 45.0%
TTGCAGCAGCACTTGTGTTT+AGG - chr3.1:572557-572576 None:intergenic 45.0%
! ACGTTTCAGTGATGGCGATT+TGG - chr3.1:572007-572026 None:intergenic 45.0%
! CCTATTGACTGTTTCAGCTG+TGG + chr3.1:572415-572434 MS.gene058752:intron 45.0%
! TCCTTTGGAAGTGAGCATCA+AGG + chr3.1:573799-573818 MS.gene058752:CDS 45.0%
!! GGTTAAGCTTGAAGGTGCTA+AGG + chr3.1:571804-571823 MS.gene058752:CDS 45.0%
!! TTTAGGACTGGTTGCAAGAG+AGG - chr3.1:572540-572559 None:intergenic 45.0%
CAGTGTAACCACGATGGAGA+AGG - chr3.1:571530-571549 None:intergenic 50.0%
GGATCAATCAACTCAGCCTG+AGG - chr3.1:571946-571965 None:intergenic 50.0%
GTTCGTTTCCTTCTCCATCG+TGG + chr3.1:571519-571538 MS.gene058752:CDS 50.0%
TCTGCTGTTCAAGGCTGTCA+AGG + chr3.1:571877-571896 MS.gene058752:CDS 50.0%
TGACTTACTTGGGTCGCGAA+CGG - chr3.1:571562-571581 None:intergenic 50.0%
! CATTGGCTGAAGAAGCTGCA+TGG + chr3.1:572454-572473 MS.gene058752:CDS 50.0%
! GCAGCACTTGTGTTTAGGAC+TGG - chr3.1:572552-572571 None:intergenic 50.0%
! TCTCTGGGAGTTGCAACGAA+GGG - chr3.1:573020-573039 None:intergenic 50.0%
! TTCTCTGGGAGTTGCAACGA+AGG - chr3.1:573021-573040 None:intergenic 50.0%
!! TTGAGAGTACCGTTGAGTGC+AGG - chr3.1:571967-571986 None:intergenic 50.0%
AGAGGCCCTATGACCATTGC+TGG - chr3.1:572522-572541 None:intergenic 55.0%
GAGGCCCTATGACCATTGCT+GGG - chr3.1:572521-572540 None:intergenic 55.0%
GGCACACACTTTGCCGACAT+TGG - chr3.1:572330-572349 None:intergenic 55.0%
GTGTGTGTAACTGGCGCTTC+AGG + chr3.1:571477-571496 MS.gene058752:CDS 55.0%
CGCAACAGCAGCAGCAGAAG+AGG - chr3.1:572040-572059 None:intergenic 60.0%
CTTACTTGGGTCGCGAACGG+TGG - chr3.1:571559-571578 None:intergenic 60.0%
TGGCTTATCGTCCGCACACC+TGG - chr3.1:573720-573739 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 571462 573865 571462 ID=MS.gene058752
chr3.1 mRNA 571462 573865 571462 ID=MS.gene058752.t1;Parent=MS.gene058752
chr3.1 exon 571462 571573 571462 ID=MS.gene058752.t1.exon1;Parent=MS.gene058752.t1
chr3.1 CDS 571462 571573 571462 ID=cds.MS.gene058752.t1;Parent=MS.gene058752.t1
chr3.1 exon 571779 571900 571779 ID=MS.gene058752.t1.exon2;Parent=MS.gene058752.t1
chr3.1 CDS 571779 571900 571779 ID=cds.MS.gene058752.t1;Parent=MS.gene058752.t1
chr3.1 exon 571949 572140 571949 ID=MS.gene058752.t1.exon3;Parent=MS.gene058752.t1
chr3.1 CDS 571949 572140 571949 ID=cds.MS.gene058752.t1;Parent=MS.gene058752.t1
chr3.1 exon 572432 572594 572432 ID=MS.gene058752.t1.exon4;Parent=MS.gene058752.t1
chr3.1 CDS 572432 572594 572432 ID=cds.MS.gene058752.t1;Parent=MS.gene058752.t1
chr3.1 exon 572854 573040 572854 ID=MS.gene058752.t1.exon5;Parent=MS.gene058752.t1
chr3.1 CDS 572854 573040 572854 ID=cds.MS.gene058752.t1;Parent=MS.gene058752.t1
chr3.1 exon 573721 573865 573721 ID=MS.gene058752.t1.exon6;Parent=MS.gene058752.t1
chr3.1 CDS 573721 573865 573721 ID=cds.MS.gene058752.t1;Parent=MS.gene058752.t1
Gene Sequence

>MS.gene058752

ATGAACAGCAACGTTGTGTGTGTAACTGGCGCTTCAGGTTACATAGCTTCATGGCTCGTTCGTTTCCTTCTCCATCGTGGTTACACTGTTAAAGCCACCGTTCGCGACCCAAGTAAGTCATTCTCTTCTCTTTTGATCTTTATAACACAAACACTTGTGATCAAAGATATTTCTAGTGTCAGACGTATAATTACACTGAATTAATTAAGTCATTGTTTAAAGTTAATGTGTCTATCTCCTGTCCGATGTTTGTGTCTATGTCCGTGCTTCATACGTTTTGACCCTATGTTTGATTTGATTATTATGGCTGCCTGTAGATGATCCGAAGAAGATCAACCACTTGGTTAAGCTTGAAGGTGCTAAGGAGAGATTACAATTATTCAAGGCAAATCTACTTGAACAGGGAGCCTTTGATTCTGCTGTTCAAGGCTGTCAAGGTGTCTTTCACACTGCATCTCCCTTCTATCATGATGTCAAAGACCCTCAGGCTGAGTTGATTGATCCTGCACTCAACGGTACTCTCAATGTTCTCAAATCATGTGCCAAATCGCCATCACTGAAACGTGTTGTCTTAACCTCTTCTGCTGCTGCTGTTGCGTACAATGAAAAGCCTCGAACTCCTGATGTTGTTGTTGACGAGACTTGGTTTACTGATGCTGATTTCTGTGCCAAATTAAACGTATCTCCCTAGCTAAACTTACAAAATCACACAATTTAGTCATAAAGTACATAAAAATTTGTCAATTTAGTCCATAACATCTTCAATAGCAAGGACTAAATTGTTTTTGGAGTTAGTGTTTCAATCTTAAATGTATCTTCTTCAGCCAATGCGCTAGTGCATAACATGCTAGCTAATGGTTTTGTTCCAATGTCGGCAAAGTGTGTGCCATGCCAATGCCATGATTAATCATGTAATAAATTATGCTATCATGCTCTTTGAATTCTTTCTATTTCCTATTGACTGTTTCAGCTGTGGTATGCGGTTTCGAAAACATTGGCTGAAGAAGCTGCATGGAAATTTGTTAAAGAAAACAACATTGATATGGTTACTATTAACCCAGCAATGGTCATAGGGCCTCTCTTGCAACCAGTCCTAAACACAAGTGCTGCTGCAATTCTAAACCTGATTAATGGTAATTAATTACCATTTTTGTTTTATTGTAATGGTAACAATTATTGTTGAGCTAGATGAGAGTATATTTCCTGTTATTTTCGTTTGATATGAGTATGACATCGATTTTTCCCCAACATCCATTGTTGCTTATTGAATTTTATTCTGTTTGCTATTTCAATGAATATTAGCAGTTTCTATGTGCTTCAAATATGGTTGTGTTCAAGAGGACAAGATTTTGTCCTTCTGCAGATAATAGCTCTCTCACTTCCTTGATACAGGTACACAAACATTTCCAAATTCTACTTTGGGATGGGTGTATGTGAAAGATGTTGCAAATGCCCATATTCTGGCATACGAGAATGCTTCAGCTAGTGGAAGACATTGTTTGGTTGAGAGTGTAGCGCACTACTCAGAAATTGTGAAGATTTTACGTGAACTGTACCCTTCGTTGCAACTCCCAGAGAAGTAAGATTAATAATTTCAATAACTGAAAGATTGCATATAATTATGTTCCTAAATGAATGCGGATTCTTATCTGGTGTGCGTCATTCTTTAAAGCTCTCTTTACCTGTTTGAAACTCAATTCAGTGCTAAAAATGAAAGGATTCAGTCATCACTAATATTTGATCCAGGGTTGTTTATTTAATACATACAGAAAAAGGTAATTAAGTGAAAAATGCAGAAAAATTTCAACAATTTAGAGGTTAACTACAGTATAACTTTTATTACTTTTGCACTTTTTAACATATATTCGGCTTCTGGACCCAATATGTAAAACATGGTTTCACAGATGTTTTGCTACTGGGTAACTTGAATGGCATGATCATGACTTTGCACACCTTCCTCTATTTTTATGTCTTCTGTAGATTAATTGTTATGCAAAATTGCCAATTTGTACTGAATTTTTCGTTTGAAATTGAAACTCATTACTGAATTAAGTGTTTCTAAAATAAGGCCAAGTATAGCAACTTTAAATGTGGCTAGTCCTACAAATGTTGTTTAATATCCGAAATCATAGGTTAATGGTTACTATAAAATGATTCATCATTCTGTCCATTTCTGTATTTACATTTATATATTTCTAGTTTAATTTGTTTAGATTTTTCTAATATCGTCTTCACTTTGTCAACTATATATGTTACCAGGTGTGCGGACGATAAGCCATATGTGCCTACATATCAGTTTTCCAAAGAAAAGGCAATGAGTTTGGGAATTGAATATACTCCTTTGGAAGTGAGCATCAAGGAAACTGTTGAAAGTTTGAAAGAAAAGAAGTTCGTCAACTTTTGA

Protein sequence

>MS.gene058752.t1

MNSNVVCVTGASGYIASWLVRFLLHRGYTVKATVRDPNDPKKINHLVKLEGAKERLQLFKANLLEQGAFDSAVQGCQGAELIDPALNGTLNVLKSCAKSPSLKRVVLTSSAAAVAYNEKPRTPDVVVDETWFTDADFCAKLNLWYAVSKTLAEEAAWKFVKENNIDMVTINPAMVIGPLLQPVLNTSAAAILNLINGTQTFPNSTLGWVYVKDVANAHILAYENASASGRHCLVESVAHYSEIVKILRELYPSLQLPEKCADDKPYVPTYQFSKEKAMSLGIEYTPLEVSIKETVESLKEKKFVNF