Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071003.t1 | XP_003604116.1 | 94.6 | 203 | 7 | 1 | 3 | 201 | 93 | 295 | 8.10E-107 | 396.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071003.t1 | G7JUF2 | 94.6 | 203 | 7 | 1 | 3 | 201 | 93 | 295 | 5.9e-107 | 396.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055849 | MS.gene071003 | 0.800882 | 1.17E-48 | -1.69E-46 |
| MS.gene057684 | MS.gene071003 | 0.809589 | 1.76E-50 | -1.69E-46 |
| MS.gene057687 | MS.gene071003 | 0.80674 | 7.10E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAAATGAGAATGCTAAAA+TGG | 0.194276 | 4.3:+89720648 | None:intergenic |
| AACCTTAGGTTTGCAGGATT+TGG | 0.251778 | 4.3:-89720714 | None:intergenic |
| ATCAGTAACCTTAGGTTTGC+AGG | 0.256518 | 4.3:-89720720 | None:intergenic |
| GACCGTGTTCAATAATATTT+CGG | 0.348371 | 4.3:+89721830 | MS.gene071003:CDS |
| CTAGAGAATACGTGCTAACT+TGG | 0.350444 | 4.3:+89721997 | MS.gene071003:CDS |
| TTCAGTCAATTTAATGCAAA+AGG | 0.385709 | 4.3:+89723081 | MS.gene071003:CDS |
| TTAGGAATGTGAACATACTT+TGG | 0.398158 | 4.3:+89722516 | MS.gene071003:intron |
| GACTGAACTGTTAACTGAAC+TGG | 0.403147 | 4.3:-89723065 | None:intergenic |
| GAATGTGGAGATGGCAAAAC+TGG | 0.403229 | 4.3:+89722961 | MS.gene071003:CDS |
| CTAAATGAGAATGCTAAAAT+GGG | 0.452700 | 4.3:+89720649 | None:intergenic |
| TACATAGCTCCATATGCCTT+TGG | 0.455824 | 4.3:-89722990 | None:intergenic |
| CAAGTTAGCACGTATTCTCT+AGG | 0.463689 | 4.3:-89721996 | None:intergenic |
| AAATCTGATGGTTCTGAAGT+TGG | 0.471935 | 4.3:+89721942 | MS.gene071003:CDS |
| TATTCTCTAGGTTTCAAAAG+AGG | 0.479731 | 4.3:-89721984 | None:intergenic |
| CTTGGAAATTGTGGAGGGGA+AGG | 0.495593 | 4.3:+89722015 | MS.gene071003:CDS |
| CAATGACTACAGAAAACAAT+GGG | 0.504178 | 4.3:+89721881 | MS.gene071003:CDS |
| ACGTGCTAACTTGGAAATTG+TGG | 0.505021 | 4.3:+89722006 | MS.gene071003:CDS |
| CACGGCAGAATAAATATGTA+CGG | 0.508876 | 4.3:+89722542 | MS.gene071003:CDS |
| ATGTTTCATCAAGAAGATGC+TGG | 0.515286 | 4.3:+89722935 | MS.gene071003:CDS |
| ATTCTCTAGGTTTCAAAAGA+GGG | 0.532340 | 4.3:-89721983 | None:intergenic |
| TGCCAAATCCTGCAAACCTA+AGG | 0.543122 | 4.3:+89720712 | MS.gene071003:CDS |
| GAAGATACTCTGCTGCAAGC+TGG | 0.548902 | 4.3:+89723035 | MS.gene071003:CDS |
| ATCTCACAGGCATTTCTACC+AGG | 0.552255 | 4.3:-89722908 | None:intergenic |
| GGTTGAGCACAATCAACTGC+AGG | 0.572742 | 4.3:+89721914 | MS.gene071003:CDS |
| ATGAAACATTGTGATCTCAC+AGG | 0.577864 | 4.3:-89722921 | None:intergenic |
| CTGCAGGTGGACAAATCTGA+TGG | 0.593077 | 4.3:+89721930 | MS.gene071003:CDS |
| TGCTAACTTGGAAATTGTGG+AGG | 0.595043 | 4.3:+89722009 | MS.gene071003:CDS |
| ACGGCAGAATAAATATGTAC+GGG | 0.595469 | 4.3:+89722543 | MS.gene071003:CDS |
| CGTACATATTTATTCTGCCG+TGG | 0.595658 | 4.3:-89722541 | None:intergenic |
| ATGGAGCTATGTATGCAAGA+TGG | 0.597778 | 4.3:+89723000 | MS.gene071003:CDS |
| GTGAACATACTTTGGCTCCA+CGG | 0.602406 | 4.3:+89722524 | MS.gene071003:CDS |
| GTCACACTCAAATATCTCAA+GGG | 0.610413 | 4.3:-89721810 | None:intergenic |
| GCTAACTTGGAAATTGTGGA+GGG | 0.612789 | 4.3:+89722010 | MS.gene071003:CDS |
| TGCTGGTTTGAATGTGGAGA+TGG | 0.613421 | 4.3:+89722952 | MS.gene071003:CDS |
| GGTCACACTCAAATATCTCA+AGG | 0.625085 | 4.3:-89721811 | None:intergenic |
| AGAAGATGCTGGTTTGAATG+TGG | 0.629014 | 4.3:+89722946 | MS.gene071003:CDS |
| TGAGCACAATCAACTGCAGG+TGG | 0.636879 | 4.3:+89721917 | MS.gene071003:CDS |
| GATGCTAAGAAACTTCTACA+TGG | 0.648028 | 4.3:+89721857 | MS.gene071003:CDS |
| TCACACTCAAATATCTCAAG+GGG | 0.652492 | 4.3:-89721809 | None:intergenic |
| ACAATGACTACAGAAAACAA+TGG | 0.653588 | 4.3:+89721880 | MS.gene071003:CDS |
| AGCCGAAATATTATTGAACA+CGG | 0.666524 | 4.3:-89721832 | None:intergenic |
| CTAACTTGGAAATTGTGGAG+GGG | 0.668627 | 4.3:+89722011 | MS.gene071003:CDS |
| TCTGGCTGGCGAATAAGACA+AGG | 0.684761 | 4.3:+89722580 | MS.gene071003:CDS |
| AAAACAATGGGATAAGACAG+TGG | 0.709971 | 4.3:+89721893 | MS.gene071003:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTATTTATAAATTAAA+TGG | + | chr4.3:89721388-89721407 | MS.gene071003:intron | 0.0% |
| !!! | TATAATTAGTTATATGTTTT+AGG | + | chr4.3:89721668-89721687 | MS.gene071003:intron | 10.0% |
| !!! | TGTAATTTTAAATTTGAATT+TGG | + | chr4.3:89721725-89721744 | MS.gene071003:intron | 10.0% |
| !! | ACAACGAAATATAAATAAAA+AGG | - | chr4.3:89722820-89722839 | None:intergenic | 15.0% |
| !! | GACATTATTATAATTTATCA+TGG | + | chr4.3:89720765-89720784 | MS.gene071003:intron | 15.0% |
| !!! | AACATTTTACTGTTATATAA+AGG | + | chr4.3:89722042-89722061 | MS.gene071003:intron | 15.0% |
| !!! | AATTTTTTTCTTTTCATCTT+TGG | + | chr4.3:89722483-89722502 | MS.gene071003:intron | 15.0% |
| !!! | ATTAGAAACAATATTTTAAC+TGG | + | chr4.3:89721528-89721547 | MS.gene071003:intron | 15.0% |
| !!! | ATTTATATTTTTCCTTAACT+TGG | - | chr4.3:89721025-89721044 | None:intergenic | 15.0% |
| !! | ATATTCCCATAAAAAATTCA+CGG | - | chr4.3:89722633-89722652 | None:intergenic | 20.0% |
| !! | CATTTCAAGAATGATATTAA+AGG | - | chr4.3:89721323-89721342 | None:intergenic | 20.0% |
| !! | GGAGTTTAAATTTAATTCTT+TGG | + | chr4.3:89721689-89721708 | MS.gene071003:intron | 20.0% |
| !! | TTATATAAAGGTAATACATC+CGG | + | chr4.3:89722054-89722073 | MS.gene071003:intron | 20.0% |
| !! | TTCTTGATCAATATATTTCT+AGG | - | chr4.3:89722258-89722277 | None:intergenic | 20.0% |
| !!! | AAATGGAAGATATTTTTTGT+TGG | + | chr4.3:89721405-89721424 | MS.gene071003:intron | 20.0% |
| !!! | ATTTAAAATTACATGCTTGA+AGG | - | chr4.3:89721718-89721737 | None:intergenic | 20.0% |
| !!! | CTTTTTTGAATAAACATGTT+TGG | - | chr4.3:89721591-89721610 | None:intergenic | 20.0% |
| !!! | TTTTTCCGTGAATTTTTTAT+GGG | + | chr4.3:89722625-89722644 | MS.gene071003:intron | 20.0% |
| !!! | TTTTTCTATCCTCATAAAAA+TGG | + | chr4.3:89722672-89722691 | MS.gene071003:intron | 20.0% |
| ! | AAAATTTGAATGAACTATGC+TGG | + | chr4.3:89721294-89721313 | MS.gene071003:intron | 25.0% |
| ! | AGAAATTAGAGATTAGAACT+TGG | + | chr4.3:89722274-89722293 | MS.gene071003:intron | 25.0% |
| ! | AGCAATCATTCTTGAAAAAA+AGG | - | chr4.3:89722458-89722477 | None:intergenic | 25.0% |
| ! | ATCATATAACAATTCAAGCT+TGG | - | chr4.3:89720846-89720865 | None:intergenic | 25.0% |
| ! | ATCATTCTTGAAAAAAAGGT+AGG | - | chr4.3:89722454-89722473 | None:intergenic | 25.0% |
| ! | TGATAATAGTGATATACTAG+TGG | - | chr4.3:89722329-89722348 | None:intergenic | 25.0% |
| ! | TGTGCAAATATTTGAGAATA+TGG | - | chr4.3:89722359-89722378 | None:intergenic | 25.0% |
| !! | AATCTATTTTGTCCAAGTTA+AGG | + | chr4.3:89721010-89721029 | MS.gene071003:intron | 25.0% |
| !! | GTTTTTCCGTGAATTTTTTA+TGG | + | chr4.3:89722624-89722643 | MS.gene071003:intron | 25.0% |
| !! | TTCTCATTCTGTACATATTT+TGG | + | chr4.3:89722395-89722414 | MS.gene071003:intron | 25.0% |
| !!! | AATATTGTTTCTAATCAGCT+TGG | - | chr4.3:89721523-89721542 | None:intergenic | 25.0% |
| !!! | TAAGAAAAATTGACTTGTGT+AGG | - | chr4.3:89721650-89721669 | None:intergenic | 25.0% |
| AAAAAGGGAAAACATACAAG+GGG | - | chr4.3:89720880-89720899 | None:intergenic | 30.0% | |
| AAATACAAGTTTAGGGACAA+AGG | + | chr4.3:89721254-89721273 | MS.gene071003:intron | 30.0% | |
| AATTCTTCTTGTTCAATGAC+AGG | - | chr4.3:89722233-89722252 | None:intergenic | 30.0% | |
| ACAATGACTACAGAAAACAA+TGG | + | chr4.3:89721880-89721899 | MS.gene071003:CDS | 30.0% | |
| ACATGTGCATTAACACTAAA+AGG | - | chr4.3:89722119-89722138 | None:intergenic | 30.0% | |
| ACATTGTGCAAGTTAGAAAA+AGG | - | chr4.3:89720896-89720915 | None:intergenic | 30.0% | |
| ACCTCCTAAAATACAAGTTT+AGG | + | chr4.3:89721246-89721265 | MS.gene071003:intron | 30.0% | |
| AGAAAAAGGGAAAACATACA+AGG | - | chr4.3:89720882-89720901 | None:intergenic | 30.0% | |
| AGCCGAAATATTATTGAACA+CGG | - | chr4.3:89721835-89721854 | None:intergenic | 30.0% | |
| AGGATAAAATCAGTAACCTT+AGG | - | chr4.3:89720731-89720750 | None:intergenic | 30.0% | |
| ATAACAATTCAAGCTTGGTA+AGG | - | chr4.3:89720841-89720860 | None:intergenic | 30.0% | |
| ATATTTGAGAATATGGTGAC+TGG | - | chr4.3:89722352-89722371 | None:intergenic | 30.0% | |
| ATTCTCTAGGTTTCAAAAGA+GGG | - | chr4.3:89721986-89722005 | None:intergenic | 30.0% | |
| CAATGACTACAGAAAACAAT+GGG | + | chr4.3:89721881-89721900 | MS.gene071003:CDS | 30.0% | |
| CATTGTGCAAGTTAGAAAAA+GGG | - | chr4.3:89720895-89720914 | None:intergenic | 30.0% | |
| CCTCCTAAAATACAAGTTTA+GGG | + | chr4.3:89721247-89721266 | MS.gene071003:intron | 30.0% | |
| GAAAAAGGGAAAACATACAA+GGG | - | chr4.3:89720881-89720900 | None:intergenic | 30.0% | |
| GACCGTGTTCAATAATATTT+CGG | + | chr4.3:89721830-89721849 | MS.gene071003:CDS | 30.0% | |
| TAATTTATCATGGCTACTCT+TGG | + | chr4.3:89720775-89720794 | MS.gene071003:intron | 30.0% | |
| TATTCTCTAGGTTTCAAAAG+AGG | - | chr4.3:89721987-89722006 | None:intergenic | 30.0% | |
| TCTCATATGGATGTTGTTAT+GGG | + | chr4.3:89722165-89722184 | MS.gene071003:intron | 30.0% | |
| TTAACCTCCATAAAAATGCA+CGG | - | chr4.3:89722782-89722801 | None:intergenic | 30.0% | |
| TTAGGAATGTGAACATACTT+TGG | + | chr4.3:89722516-89722535 | MS.gene071003:intron | 30.0% | |
| TTCTCATATGGATGTTGTTA+TGG | + | chr4.3:89722164-89722183 | MS.gene071003:intron | 30.0% | |
| ! | TGTATTTCCGTGCATTTTTA+TGG | + | chr4.3:89722772-89722791 | MS.gene071003:intron | 30.0% |
| ! | TGTCCCTAAACTTGTATTTT+AGG | - | chr4.3:89721253-89721272 | None:intergenic | 30.0% |
| !! | AGATCTTCACCATTTTTATG+AGG | - | chr4.3:89722684-89722703 | None:intergenic | 30.0% |
| !!! | ATTTTATTGTTGTTTCTCCC+TGG | + | chr4.3:89721772-89721791 | MS.gene071003:intron | 30.0% |
| !!! | ATTTTTTGTTGGTGGTGTAA+GGG | + | chr4.3:89721416-89721435 | MS.gene071003:intron | 30.0% |
| !!! | TACTGATTTTATCCTTCAAC+TGG | + | chr4.3:89720736-89720755 | MS.gene071003:intron | 30.0% |
| !!! | TATTTTTTGTTGGTGGTGTA+AGG | + | chr4.3:89721415-89721434 | MS.gene071003:intron | 30.0% |
| !!! | TGGAAGATATTTTTTGTTGG+TGG | + | chr4.3:89721408-89721427 | MS.gene071003:intron | 30.0% |
| AAAACAATGGGATAAGACAG+TGG | + | chr4.3:89721893-89721912 | MS.gene071003:CDS | 35.0% | |
| AAAGGTAATACATCCGGTTA+TGG | + | chr4.3:89722060-89722079 | MS.gene071003:intron | 35.0% | |
| AACAATAGCTCAACACCTAA+AGG | - | chr4.3:89721448-89721467 | None:intergenic | 35.0% | |
| AAGGTAATACATCCGGTTAT+GGG | + | chr4.3:89722061-89722080 | MS.gene071003:intron | 35.0% | |
| AATGTCTATACTCCAGTTGA+AGG | - | chr4.3:89720751-89720770 | None:intergenic | 35.0% | |
| ACAATCAACCTATCAAGCAT+GGG | - | chr4.3:89721621-89721640 | None:intergenic | 35.0% | |
| ACGGCAGAATAAATATGTAC+GGG | + | chr4.3:89722543-89722562 | MS.gene071003:CDS | 35.0% | |
| ATCTTTGGTGAAACCTTGTT+AGG | + | chr4.3:89722498-89722517 | MS.gene071003:intron | 35.0% | |
| ATGAAACATTGTGATCTCAC+AGG | - | chr4.3:89722924-89722943 | None:intergenic | 35.0% | |
| ATGTGTCAAACACTCTTAAC+CGG | - | chr4.3:89721558-89721577 | None:intergenic | 35.0% | |
| ATGTTTCATCAAGAAGATGC+TGG | + | chr4.3:89722935-89722954 | MS.gene071003:CDS | 35.0% | |
| CACGGCAGAATAAATATGTA+CGG | + | chr4.3:89722542-89722561 | MS.gene071003:CDS | 35.0% | |
| GATGCTAAGAAACTTCTACA+TGG | + | chr4.3:89721857-89721876 | MS.gene071003:CDS | 35.0% | |
| GTATGTTCACATTCCTAACA+AGG | - | chr4.3:89722514-89722533 | None:intergenic | 35.0% | |
| GTCACACTCAAATATCTCAA+GGG | - | chr4.3:89721813-89721832 | None:intergenic | 35.0% | |
| TACAGAATGAGAAGTCAGAA+CGG | - | chr4.3:89722388-89722407 | None:intergenic | 35.0% | |
| TCACAAAACAGTCATGTCAT+AGG | - | chr4.3:89722870-89722889 | None:intergenic | 35.0% | |
| TCACACTCAAATATCTCAAG+GGG | - | chr4.3:89721812-89721831 | None:intergenic | 35.0% | |
| ! | ATTTCCGTGCATTTTTATGG+AGG | + | chr4.3:89722775-89722794 | MS.gene071003:intron | 35.0% |
| ! | TTTTGTGTCTCAGCTGTATT+TGG | + | chr4.3:89721490-89721509 | MS.gene071003:intron | 35.0% |
| !! | AAATCTGATGGTTCTGAAGT+TGG | + | chr4.3:89721942-89721961 | MS.gene071003:CDS | 35.0% |
| !! | CCCTAAACTTGTATTTTAGG+AGG | - | chr4.3:89721250-89721269 | None:intergenic | 35.0% |
| !!! | CAATATTTTAACTGGACACC+CGG | + | chr4.3:89721536-89721555 | MS.gene071003:intron | 35.0% |
| AACCTTAGGTTTGCAGGATT+TGG | - | chr4.3:89720717-89720736 | None:intergenic | 40.0% | |
| ACGTGCTAACTTGGAAATTG+TGG | + | chr4.3:89722006-89722025 | MS.gene071003:CDS | 40.0% | |
| AGGTAATACATCCGGTTATG+GGG | + | chr4.3:89722062-89722081 | MS.gene071003:intron | 40.0% | |
| ATCAGTAACCTTAGGTTTGC+AGG | - | chr4.3:89720723-89720742 | None:intergenic | 40.0% | |
| ATGGAGCTATGTATGCAAGA+TGG | + | chr4.3:89723000-89723019 | MS.gene071003:CDS | 40.0% | |
| CAAGTTAGCACGTATTCTCT+AGG | - | chr4.3:89721999-89722018 | None:intergenic | 40.0% | |
| CGTACATATTTATTCTGCCG+TGG | - | chr4.3:89722544-89722563 | None:intergenic | 40.0% | |
| CTAACTTGGAAATTGTGGAG+GGG | + | chr4.3:89722011-89722030 | MS.gene071003:CDS | 40.0% | |
| CTAGAGAATACGTGCTAACT+TGG | + | chr4.3:89721997-89722016 | MS.gene071003:CDS | 40.0% | |
| CTGCATTTATGTCAGTGACT+AGG | - | chr4.3:89720928-89720947 | None:intergenic | 40.0% | |
| CTGGCGATTATTATAGTACC+TGG | + | chr4.3:89722890-89722909 | MS.gene071003:intron | 40.0% | |
| GACAATCAACCTATCAAGCA+TGG | - | chr4.3:89721622-89721641 | None:intergenic | 40.0% | |
| GACTGAACTGTTAACTGAAC+TGG | - | chr4.3:89723068-89723087 | None:intergenic | 40.0% | |
| GCTAACTTGGAAATTGTGGA+GGG | + | chr4.3:89722010-89722029 | MS.gene071003:CDS | 40.0% | |
| GGTCACACTCAAATATCTCA+AGG | - | chr4.3:89721814-89721833 | None:intergenic | 40.0% | |
| TACATAGCTCCATATGCCTT+TGG | - | chr4.3:89722993-89723012 | None:intergenic | 40.0% | |
| TATCAATGCAACCCCATAAC+CGG | - | chr4.3:89722076-89722095 | None:intergenic | 40.0% | |
| TCAACTAAATGCTGCTCAGA+TGG | - | chr4.3:89721151-89721170 | None:intergenic | 40.0% | |
| TGCTAACTTGGAAATTGTGG+AGG | + | chr4.3:89722009-89722028 | MS.gene071003:CDS | 40.0% | |
| TGTGTCAAACACTCTTAACC+GGG | - | chr4.3:89721557-89721576 | None:intergenic | 40.0% | |
| ! | AATGACAGGACAAAAAGTGC+AGG | - | chr4.3:89722219-89722238 | None:intergenic | 40.0% |
| ! | ATGACAGGACAAAAAGTGCA+GGG | - | chr4.3:89722218-89722237 | None:intergenic | 40.0% |
| ! | GCAAAACTGGCATTTTCCAA+AGG | + | chr4.3:89722974-89722993 | MS.gene071003:CDS | 40.0% |
| ! | TCTAACTTGCACAATGTGCT+GGG | + | chr4.3:89720899-89720918 | MS.gene071003:intron | 40.0% |
| ! | TGACATGACTGTTTTGTGAC+TGG | + | chr4.3:89722871-89722890 | MS.gene071003:intron | 40.0% |
| ! | TTCTAACTTGCACAATGTGC+TGG | + | chr4.3:89720898-89720917 | MS.gene071003:intron | 40.0% |
| !! | AGAAGATGCTGGTTTGAATG+TGG | + | chr4.3:89722946-89722965 | MS.gene071003:CDS | 40.0% |
| !! | TAGGTGTTGAGCTATTGTTG+AGG | + | chr4.3:89721449-89721468 | MS.gene071003:intron | 40.0% |
| !! | TGGCATTTTCCAAAGGCATA+TGG | + | chr4.3:89722981-89723000 | MS.gene071003:CDS | 40.0% |
| !! | TTGAGTTTTTCAGATCTGGC+TGG | + | chr4.3:89722566-89722585 | MS.gene071003:CDS | 40.0% |
| ATCTCACAGGCATTTCTACC+AGG | - | chr4.3:89722911-89722930 | None:intergenic | 45.0% | |
| CTGAGCAGCATTTAGTTGAG+AGG | + | chr4.3:89721152-89721171 | MS.gene071003:intron | 45.0% | |
| GAATGTGGAGATGGCAAAAC+TGG | + | chr4.3:89722961-89722980 | MS.gene071003:CDS | 45.0% | |
| GTGTAAGGGTTGTGTCCTTT+AGG | + | chr4.3:89721430-89721449 | MS.gene071003:intron | 45.0% | |
| TAGTGAACAAAGTGTGCCAG+AGG | - | chr4.3:89720962-89720981 | None:intergenic | 45.0% | |
| TGCCAAATCCTGCAAACCTA+AGG | + | chr4.3:89720712-89720731 | MS.gene071003:CDS | 45.0% | |
| TTCGCGACTGCTTTCTCATA+TGG | + | chr4.3:89722152-89722171 | MS.gene071003:intron | 45.0% | |
| ! | GTGAACATACTTTGGCTCCA+CGG | + | chr4.3:89722524-89722543 | MS.gene071003:CDS | 45.0% |
| ! | TGACAGGACAAAAAGTGCAG+GGG | - | chr4.3:89722217-89722236 | None:intergenic | 45.0% |
| !! | CGGGTTGAGTTTTTCAGATC+TGG | + | chr4.3:89722562-89722581 | MS.gene071003:CDS | 45.0% |
| !! | TCTCAGCTGTATTTGGTGCA+TGG | + | chr4.3:89721497-89721516 | MS.gene071003:intron | 45.0% |
| !! | TGCTGGTTTGAATGTGGAGA+TGG | + | chr4.3:89722952-89722971 | MS.gene071003:CDS | 45.0% |
| AAAGCAGTCGCGAACACATG+AGG | - | chr4.3:89722146-89722165 | None:intergenic | 50.0% | |
| AACTTGCACAATGTGCTGGG+AGG | + | chr4.3:89720902-89720921 | MS.gene071003:intron | 50.0% | |
| AAGTGCAGGGGAAGAGAAAG+AGG | - | chr4.3:89722205-89722224 | None:intergenic | 50.0% | |
| AGTGCAGGGGAAGAGAAAGA+GGG | - | chr4.3:89722204-89722223 | None:intergenic | 50.0% | |
| CTGCAGGTGGACAAATCTGA+TGG | + | chr4.3:89721930-89721949 | MS.gene071003:CDS | 50.0% | |
| CTTGGAAATTGTGGAGGGGA+AGG | + | chr4.3:89722015-89722034 | MS.gene071003:CDS | 50.0% | |
| GAACAAAGTGTGCCAGAGGA+TGG | - | chr4.3:89720958-89720977 | None:intergenic | 50.0% | |
| GAAGATACTCTGCTGCAAGC+TGG | + | chr4.3:89723035-89723054 | MS.gene071003:CDS | 50.0% | |
| GGTTGAGCACAATCAACTGC+AGG | + | chr4.3:89721914-89721933 | MS.gene071003:CDS | 50.0% | |
| GTTGAGGCTGTGTGTCTAAG+AGG | + | chr4.3:89721465-89721484 | MS.gene071003:intron | 50.0% | |
| TCTCCCTGGATGTTGCAGAA+TGG | + | chr4.3:89721786-89721805 | MS.gene071003:intron | 50.0% | |
| TCTGGCTGGCGAATAAGACA+AGG | + | chr4.3:89722580-89722599 | MS.gene071003:CDS | 50.0% | |
| TGAGCACAATCAACTGCAGG+TGG | + | chr4.3:89721917-89721936 | MS.gene071003:CDS | 50.0% | |
| TGCAGAGTCAAACCATCCTC+TGG | + | chr4.3:89720943-89720962 | MS.gene071003:intron | 50.0% | |
| !! | GAGAAGTGCCCATGCTTGAT+AGG | + | chr4.3:89721610-89721629 | MS.gene071003:intron | 50.0% |
| AGAGAAAGAGGGCGGGGATA+TGG | - | chr4.3:89722193-89722212 | None:intergenic | 55.0% | |
| GGGCCATTCTGCAACATCCA+GGG | - | chr4.3:89721792-89721811 | None:intergenic | 55.0% | |
| AGGGGAAGAGAAAGAGGGCG+GGG | - | chr4.3:89722199-89722218 | None:intergenic | 60.0% | |
| CAGGGGAAGAGAAAGAGGGC+GGG | - | chr4.3:89722200-89722219 | None:intergenic | 60.0% | |
| GCAGGGGAAGAGAAAGAGGG+CGG | - | chr4.3:89722201-89722220 | None:intergenic | 60.0% | |
| GGGGCCATTCTGCAACATCC+AGG | - | chr4.3:89721793-89721812 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 89720658 | 89723102 | 89720658 | ID=MS.gene071003 |
| chr4.3 | mRNA | 89720658 | 89723102 | 89720658 | ID=MS.gene071003.t1;Parent=MS.gene071003 |
| chr4.3 | exon | 89720658 | 89720733 | 89720658 | ID=MS.gene071003.t1.exon1;Parent=MS.gene071003.t1 |
| chr4.3 | CDS | 89720658 | 89720733 | 89720658 | ID=cds.MS.gene071003.t1;Parent=MS.gene071003.t1 |
| chr4.3 | exon | 89721804 | 89722052 | 89721804 | ID=MS.gene071003.t1.exon2;Parent=MS.gene071003.t1 |
| chr4.3 | CDS | 89721804 | 89722052 | 89721804 | ID=cds.MS.gene071003.t1;Parent=MS.gene071003.t1 |
| chr4.3 | exon | 89722520 | 89722601 | 89722520 | ID=MS.gene071003.t1.exon3;Parent=MS.gene071003.t1 |
| chr4.3 | CDS | 89722520 | 89722601 | 89722520 | ID=cds.MS.gene071003.t1;Parent=MS.gene071003.t1 |
| chr4.3 | exon | 89722906 | 89723102 | 89722906 | ID=MS.gene071003.t1.exon4;Parent=MS.gene071003.t1 |
| chr4.3 | CDS | 89722906 | 89723102 | 89722906 | ID=cds.MS.gene071003.t1;Parent=MS.gene071003.t1 |
| Gene Sequence |
| Protein sequence |
