AlfalfaGEDB | MS.gene071252

M. sativa cultivar XinJiangDaYe / MS.gene071252

KEGG: -
GO: GO:0005575 GO:0005875 GO:0007017 GO:0008150 GO:0009987 GO:0030286 GO:0032991 GO:1902494
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071252.t1	RDX90882.1	89.1	64	7	0	3	66	4	67	3.30E-25	123.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071252.t1	O96860	52.5	59	26	1	8	66	1	57	7.6e-10	63.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071252.t1	A0A371GJY9	89.1	64	7	0	3	66	4	67	2.4e-25	123.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051983	MS.gene071252	0.801352	9.38E-49	-1.69E-46
MS.gene052077	MS.gene071252	0.809728	1.64E-50	-1.69E-46
MS.gene052376	MS.gene071252	0.80282	4.68E-49	-1.69E-46
MS.gene054930	MS.gene071252	0.822716	2.04E-53	-1.69E-46
MS.gene056979	MS.gene071252	0.804357	2.25E-49	-1.69E-46
MS.gene057754	MS.gene071252	0.80096	1.13E-48	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 0 sgRNAs with CRISPR-Local

Find 18 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GGTAATAAATTAAAACTAAG+AGG	-	57506:2849-2868	MS.gene071252:CDS	20.0%
!	AAACTAAGAGGATTGTTTAT+TGG	-	57506:2861-2880	MS.gene071252:CDS	25.0%
!	AATTATTGCAGGAATTTGAT+AGG	-	57506:2931-2950	MS.gene071252:CDS	25.0%
!	AGTTACATCATAGAAATCTA+GGG	+	57506:2797-2816	MS.gene071252:intergenic	25.0%
!	ATGTGTTAGTTAATTATTGC+AGG	-	57506:2920-2939	MS.gene071252:CDS	25.0%
!	ATTATTGCAGGAATTTGATA+GGG	-	57506:2932-2951	MS.gene071252:CDS	25.0%
!	TATAAATCGAGCTATATCAA+TGG	+	57506:2824-2843	MS.gene071252:intergenic	25.0%
!	TATAGCTCGATTTATAAAGA+AGG	-	57506:2828-2847	MS.gene071252:CDS	25.0%
	AGATTTCTATGATGTAACTG+AGG	-	57506:2798-2817	MS.gene071252:intron	30.0%
	CAGTTACATCATAGAAATCT+AGG	+	57506:2798-2817	MS.gene071252:intergenic	30.0%
	CTTCAATTCATCATGCTAGA+AGG	-	57506:2700-2719	MS.gene071252:CDS	35.0%
!	ATCATAGAAATCTAGGGCTT+TGG	+	57506:2791-2810	MS.gene071252:intergenic	35.0%
	ATTCATCATGCTAGAAGGCA+AGG	-	57506:2705-2724	MS.gene071252:CDS	40.0%
	CAGGAATTTGATAGGGTTCA+TGG	-	57506:2939-2958	MS.gene071252:CDS	40.0%
	TTTGATAGGGTTCATGGACC+TGG	-	57506:2945-2964	MS.gene071252:CDS	45.0%
!!!	TTTTAATGTAATTTTTTTTA+TGG	-	57506:2887-2906	MS.gene071252:CDS	5.0%
	ATAGGGTTCATGGACCTGGT+TGG	-	57506:2949-2968	MS.gene071252:CDS	50.0%
	CTAGAAGGCAAGGCAGTGAT+TGG	-	57506:2715-2734	MS.gene071252:intron	50.0%

Chromosome	Type	Strat	End	Strand	Name
57506	gene	2690	2980	2690	ID=MS.gene071252
57506	mRNA	2690	2980	2690	ID=MS.gene071252.t1;Parent=MS.gene071252
57506	exon	2821	2980	2821	ID=MS.gene071252.t1.exon1;Parent=MS.gene071252.t1
57506	CDS	2821	2980	2821	ID=cds.MS.gene071252.t1;Parent=MS.gene071252.t1
57506	exon	2690	2728	2690	ID=MS.gene071252.t1.exon2;Parent=MS.gene071252.t1
57506	CDS	2690	2728	2690	ID=cds.MS.gene071252.t1;Parent=MS.gene071252.t1

Gene Sequence	>MS.gene071252 TAAATTTTGGCTTCAATTCATCATGCTAGAAGGCAAGGCAGTGATTGGTGAGACTGATATGCTTCAGACTATGCAACAAGATGCTCTTGATTTAGCATCCAAAGCCCTAGATTTCTATGATGTAACTGAGGCCATTGATATAGCTCGATTTATAAAGAAGGTAATAAATTAAAACTAAGAGGATTGTTTATTGGTTATTTTAATGTAATTTTTTTTATGGACAAATTTTGATGTGTTAGTTAATTATTGCAGGAATTTGATAGGGTTCATGGACCTGGTTGGCAATGCATT
Protein sequence	>MS.gene071252.t1 UILASIHHARRQGSDWUDUYASDYATRCSUFSIQSPRFLUCNUGHUYSSIYKEGIUUGSWTWLAMH

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