Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072405.t1 | KEH43565.1 | 96 | 873 | 8 | 2 | 1 | 873 | 1 | 846 | 0.00E+00 | 1596.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072405.t1 | F4HWE6 | 58.3 | 889 | 314 | 11 | 2 | 873 | 4 | 852 | 7.6e-267 | 921.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072405.t1 | A0A072VPI1 | 96.0 | 873 | 8 | 2 | 1 | 873 | 1 | 846 | 0.0e+00 | 1596.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049193 | MS.gene072405 | 0.800622 | 1.32E-48 | -1.69E-46 |
| MS.gene050213 | MS.gene072405 | 0.800162 | 1.64E-48 | -1.69E-46 |
| MS.gene050257 | MS.gene072405 | 0.839266 | 1.76E-57 | -1.69E-46 |
| MS.gene050258 | MS.gene072405 | 0.827192 | 1.79E-54 | -1.69E-46 |
| MS.gene050348 | MS.gene072405 | 0.835757 | 1.39E-56 | -1.69E-46 |
| MS.gene052609 | MS.gene072405 | 0.852524 | 4.36E-61 | -1.69E-46 |
| MS.gene052776 | MS.gene072405 | 0.826866 | 2.14E-54 | -1.69E-46 |
| MS.gene053143 | MS.gene072405 | 0.836436 | 9.37E-57 | -1.69E-46 |
| MS.gene053486 | MS.gene072405 | 0.805272 | 1.45E-49 | -1.69E-46 |
| MS.gene054585 | MS.gene072405 | 0.808898 | 2.47E-50 | -1.69E-46 |
| MS.gene054824 | MS.gene072405 | 0.801629 | 8.23E-49 | -1.69E-46 |
| MS.gene056507 | MS.gene072405 | 0.800098 | 1.69E-48 | -1.69E-46 |
| MS.gene056519 | MS.gene072405 | 0.824277 | 8.81E-54 | -1.69E-46 |
| MS.gene058649 | MS.gene072405 | 0.825501 | 4.53E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072405.t1 | MTR_1g096550 | 96.334 | 873 | 5 | 2 | 1 | 873 | 1 | 846 | 0.0 | 1720 |
| MS.gene072405.t1 | MTR_1g096550 | 96.334 | 873 | 5 | 2 | 1 | 873 | 1 | 846 | 0.0 | 1718 |
| MS.gene072405.t1 | MTR_1g096550 | 95.951 | 741 | 3 | 2 | 133 | 873 | 1 | 714 | 0.0 | 1452 |
| MS.gene072405.t1 | MTR_3g008090 | 88.136 | 177 | 15 | 2 | 251 | 426 | 1 | 172 | 4.25e-101 | 314 |
| MS.gene072405.t1 | MTR_3g008090 | 63.043 | 92 | 10 | 2 | 612 | 702 | 158 | 226 | 2.89e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072405.t1 | AT1G76850 | 61.204 | 897 | 280 | 13 | 1 | 873 | 1 | 853 | 0.0 | 1051 |
| MS.gene072405.t1 | AT1G21170 | 60.899 | 890 | 289 | 11 | 2 | 873 | 4 | 852 | 0.0 | 1046 |
| MS.gene072405.t1 | AT1G21170 | 59.956 | 899 | 292 | 11 | 2 | 873 | 4 | 861 | 0.0 | 1041 |
Find 209 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTAATCCTGGTGGTTTAT+TGG | 0.199665 | 1.1:+69535749 | MS.gene072405:CDS |
| AAGTTCTGCATTGGCTAAAA+AGG | 0.206585 | 1.1:+69535566 | MS.gene072405:CDS |
| TCCATCATATACCAGCTTTC+TGG | 0.223581 | 1.1:+69539671 | MS.gene072405:CDS |
| AACTTTATTTGCAGAACTAT+TGG | 0.226296 | 1.1:-69540059 | None:intergenic |
| CCTCTTCAAGAACACGTTTC+AGG | 0.240737 | 1.1:-69537917 | None:intergenic |
| GATCTTGTAATTTGTTTCTC+AGG | 0.252991 | 1.1:+69544624 | MS.gene072405:CDS |
| CCCACCTGGCGTTCGAATAA+AGG | 0.262738 | 1.1:-69537449 | None:intergenic |
| GCTTCTCCAGATGGCGTTAA+AGG | 0.264551 | 1.1:+69532628 | MS.gene072405:CDS |
| CATTGCAACCAGAGATTATA+AGG | 0.265405 | 1.1:+69541530 | MS.gene072405:CDS |
| AGTGAGGTTATTGTTGGATT+TGG | 0.275962 | 1.1:+69538719 | MS.gene072405:CDS |
| TTATAAGGATTTATGTTCTA+AGG | 0.283456 | 1.1:+69541545 | MS.gene072405:CDS |
| TTGATTGTACTAAGCAATAT+TGG | 0.288802 | 1.1:+69543162 | MS.gene072405:CDS |
| GCTTCAAGTGTATATCCATT+AGG | 0.312290 | 1.1:-69543081 | None:intergenic |
| TCCTGGTGGTTTATTGGTAT+TGG | 0.316237 | 1.1:+69535755 | MS.gene072405:CDS |
| ACAGCTGAGCGGAATGTTAA+AGG | 0.335517 | 1.1:-69541676 | None:intergenic |
| ACAACTCTCCCTTTCGTTTG+AGG | 0.340372 | 1.1:-69532773 | None:intergenic |
| ATTCTTGAATTTCTTGAAGT+TGG | 0.343173 | 1.1:-69542800 | None:intergenic |
| GAAGCAGCTCCTCCGGTTGC+AGG | 0.347304 | 1.1:+69541419 | MS.gene072405:CDS |
| TGGGAAGTCCCAGACCCTTC+AGG | 0.349609 | 1.1:-69537374 | None:intergenic |
| GAAGGTTCCCATTTCCCTAA+TGG | 0.352671 | 1.1:+69543066 | MS.gene072405:CDS |
| GTGTATATCCATTAGGGAAA+TGG | 0.359067 | 1.1:-69543074 | None:intergenic |
| CGAGGGAGGAGGATCGGACT+TGG | 0.367427 | 1.1:+69532909 | MS.gene072405:CDS |
| ATCTAAAGCATGCGCAGCTT+TGG | 0.368698 | 1.1:+69541388 | MS.gene072405:CDS |
| GAAAATGCACCTTCTGATCT+TGG | 0.374744 | 1.1:+69543108 | MS.gene072405:CDS |
| ATGGCATTATTTGAATATAC+AGG | 0.376714 | 1.1:+69538761 | MS.gene072405:CDS |
| GAGGATGACCCTGAAGGGTC+TGG | 0.381558 | 1.1:+69537365 | MS.gene072405:CDS |
| ATGACAAATACCGACATATC+TGG | 0.383194 | 1.1:+69543217 | MS.gene072405:CDS |
| GTGAATATGATTTGGCTGTC+AGG | 0.383310 | 1.1:+69537656 | MS.gene072405:CDS |
| ATATTCAAATAATGCCATAC+TGG | 0.383823 | 1.1:-69538756 | None:intergenic |
| CTTGAATAATATTAAACAAA+TGG | 0.384359 | 1.1:-69537394 | None:intergenic |
| CTTCAAGTGTATATCCATTA+GGG | 0.388225 | 1.1:-69543080 | None:intergenic |
| TTCTTGAATCTGCTTCCATC+TGG | 0.388412 | 1.1:-69539441 | None:intergenic |
| TAGCAAGGGTGAATATGATT+TGG | 0.391838 | 1.1:+69537648 | MS.gene072405:CDS |
| AATATCACTGTATGGAGTTA+AGG | 0.393330 | 1.1:+69540153 | MS.gene072405:CDS |
| ATTGCTCCTTTAACGCCATC+TGG | 0.396626 | 1.1:-69532634 | None:intergenic |
| TGTGTTGATCCACTAGGTTT+GGG | 0.397098 | 1.1:+69535630 | MS.gene072405:CDS |
| GCAGAGAAAGCAGTTGGTTA+AGG | 0.397647 | 1.1:+69537066 | MS.gene072405:CDS |
| TCAGCGTCCTTGTCAGTCTT+AGG | 0.398489 | 1.1:-69535840 | None:intergenic |
| TTGCAAAAGTATATTGTTCA+AGG | 0.400874 | 1.1:-69544662 | None:intergenic |
| GCCGGAGGCGCTGAGCGTTT+CGG | 0.405968 | 1.1:-69532740 | None:intergenic |
| TCAGGATGCTTCGATCCTTA+AGG | 0.408044 | 1.1:+69542745 | MS.gene072405:intron |
| GAATACAGTGAGGTTATTGT+TGG | 0.410142 | 1.1:+69538713 | MS.gene072405:CDS |
| ATGTGTTGATCCACTAGGTT+TGG | 0.412170 | 1.1:+69535629 | MS.gene072405:CDS |
| CATTTGTTTAATATTATTCA+AGG | 0.415540 | 1.1:+69537395 | MS.gene072405:CDS |
| TATTGGTATTGGTATTTGAC+AGG | 0.421694 | 1.1:+69535766 | MS.gene072405:CDS |
| ATGTTCTAAGGCTTTGCTCT+TGG | 0.421779 | 1.1:+69541557 | MS.gene072405:CDS |
| AGCAAACTTTCCACTGAAAA+CGG | 0.428323 | 1.1:-69539707 | None:intergenic |
| TGTATATCCATTAGGGAAAT+GGG | 0.428930 | 1.1:-69543073 | None:intergenic |
| ACATTTGTTATATCTATGTT+CGG | 0.429094 | 1.1:-69537993 | None:intergenic |
| TGCTTTAGATATATCTTCAA+TGG | 0.429528 | 1.1:-69541375 | None:intergenic |
| GTACAATCAATAACTGTTGA+TGG | 0.430845 | 1.1:-69543149 | None:intergenic |
| TGACCTGGAGGCTGGTGCGC+TGG | 0.431040 | 1.1:+69537012 | MS.gene072405:CDS |
| CCCTTTCGTTTGAGGTTTCG+CGG | 0.434697 | 1.1:-69532765 | None:intergenic |
| GTTTGAGGTTTCGCGGTGGC+CGG | 0.435052 | 1.1:-69532758 | None:intergenic |
| GAGCGTATTGGAATTGAACT+TGG | 0.440323 | 1.1:+69543024 | MS.gene072405:CDS |
| TTGAATAATATTAAACAAAT+GGG | 0.441605 | 1.1:-69537393 | None:intergenic |
| TCAGGTAATTTAGAGCGTAT+TGG | 0.444817 | 1.1:+69543012 | MS.gene072405:intron |
| TCTCATTCAGTAGATCTAAC+TGG | 0.446879 | 1.1:+69539592 | MS.gene072405:CDS |
| AGCCAGAGTCGGACCCAGTA+TGG | 0.449828 | 1.1:+69538742 | MS.gene072405:CDS |
| ACATAAATCCTTATAATCTC+TGG | 0.450739 | 1.1:-69541538 | None:intergenic |
| ACCGAAACGCTCAGCGCCTC+CGG | 0.459974 | 1.1:+69532739 | MS.gene072405:CDS |
| GCGTTCGAATAAAGGCTTCA+AGG | 0.466972 | 1.1:-69537441 | None:intergenic |
| AGGTGGATGGTCTAAGAGGA+AGG | 0.468303 | 1.1:+69539620 | MS.gene072405:CDS |
| TCTTTGACAGCTTGCTCGTA+GGG | 0.470249 | 1.1:+69535473 | MS.gene072405:intron |
| TGAGGATAATGTTAAAGATC+AGG | 0.473475 | 1.1:+69532847 | MS.gene072405:CDS |
| GGGAAGTCCCAGACCCTTCA+GGG | 0.475703 | 1.1:-69537373 | None:intergenic |
| TTCTTCGGAGGGATTAATCC+TGG | 0.476879 | 1.1:+69535738 | MS.gene072405:CDS |
| TAATACAAGTGCTGCTGACC+TGG | 0.477555 | 1.1:+69536997 | MS.gene072405:CDS |
| CTCCGGCGAGGGAGGAGGAT+CGG | 0.483522 | 1.1:+69532903 | MS.gene072405:CDS |
| TGGAAGAACTCCGGCGAGGG+AGG | 0.484878 | 1.1:+69532895 | MS.gene072405:CDS |
| GAAGAGGTGGATGGTCTAAG+AGG | 0.486145 | 1.1:+69539616 | MS.gene072405:CDS |
| AGGATGACCCTGAAGGGTCT+GGG | 0.487794 | 1.1:+69537366 | MS.gene072405:CDS |
| CTCGTAGGGTTCGTGAAATG+AGG | 0.487800 | 1.1:+69535487 | MS.gene072405:CDS |
| ATCTTGTAATTTGTTTCTCA+GGG | 0.488409 | 1.1:+69544625 | MS.gene072405:CDS |
| GCGTAACGAGTTGCATGAAA+AGG | 0.489136 | 1.1:+69539406 | MS.gene072405:CDS |
| AGTGCTGCTGACCTGGAGGC+TGG | 0.492005 | 1.1:+69537004 | MS.gene072405:CDS |
| AATGAAGGAAGCAGCTCCTC+CGG | 0.493395 | 1.1:+69541412 | MS.gene072405:CDS |
| TGCCATACTGGGTCCGACTC+TGG | 0.493611 | 1.1:-69538744 | None:intergenic |
| GTCAAAGTTAAGACGAATTG+AGG | 0.495174 | 1.1:+69537346 | MS.gene072405:CDS |
| ATTAGACCACGGGGCCAGAA+TGG | 0.496458 | 1.1:+69539376 | MS.gene072405:CDS |
| ATGCAAAATTGTTCTTATCA+CGG | 0.498458 | 1.1:+69536966 | MS.gene072405:CDS |
| GACATATCTGGCAGCACTCC+AGG | 0.500524 | 1.1:+69543229 | MS.gene072405:CDS |
| AAGCCAGCGCACCAGCCTCC+AGG | 0.501540 | 1.1:-69537015 | None:intergenic |
| TACAATCAATAACTGTTGAT+GGG | 0.504051 | 1.1:-69543148 | None:intergenic |
| GTCCGATCCTCCTCCCTCGC+CGG | 0.505168 | 1.1:-69532905 | None:intergenic |
| ACTATTGGAATTTGAATCTG+TGG | 0.506633 | 1.1:-69540044 | None:intergenic |
| GGCAGGTAAGAGATTGCATA+TGG | 0.507024 | 1.1:-69541655 | None:intergenic |
| TGCAGCACAATATCACTGTA+TGG | 0.507995 | 1.1:+69540145 | MS.gene072405:CDS |
| AAGAACTCCGGCGAGGGAGG+AGG | 0.509737 | 1.1:+69532898 | MS.gene072405:CDS |
| TCCAGAAAGCTGGTATATGA+TGG | 0.509908 | 1.1:-69539672 | None:intergenic |
| ATGCTGCCACGGATAGTACT+TGG | 0.513356 | 1.1:-69537625 | None:intergenic |
| TTCTTTGACAGCTTGCTCGT+AGG | 0.517337 | 1.1:+69535472 | MS.gene072405:intron |
| TTTCTCAGGGCTCGAAGAGA+AGG | 0.521113 | 1.1:+69544638 | MS.gene072405:CDS |
| TCAACATACCAGCAAAATCC+AGG | 0.522820 | 1.1:-69542851 | None:intergenic |
| CCTGAAACGTGTTCTTGAAG+AGG | 0.525268 | 1.1:+69537917 | MS.gene072405:CDS |
| GGAACCTCTGTAGCATCCCT+TGG | 0.525564 | 1.1:-69537585 | None:intergenic |
| GAGTGGAAGAACTCCGGCGA+GGG | 0.526418 | 1.1:+69532892 | MS.gene072405:CDS |
| AGATAATTGATACCTGCAAC+CGG | 0.526500 | 1.1:-69541431 | None:intergenic |
| TGATTACAGCGGTCAATCTA+CGG | 0.528635 | 1.1:-69539648 | None:intergenic |
| ATGCGCAGCTTTGGAAATGA+AGG | 0.534081 | 1.1:+69541397 | MS.gene072405:CDS |
| TGAGGTTTCGCGGTGGCCGG+AGG | 0.536535 | 1.1:-69532755 | None:intergenic |
| CACCCTTGCTAATGCTGCCA+CGG | 0.538730 | 1.1:-69537636 | None:intergenic |
| GAGGGAGGAGGATCGGACTT+GGG | 0.538835 | 1.1:+69532910 | MS.gene072405:CDS |
| CCGCGAAACCTCAAACGAAA+GGG | 0.540947 | 1.1:+69532765 | MS.gene072405:CDS |
| ATGAGACTGGACCGCAGGAT+AGG | 0.543692 | 1.1:-69539575 | None:intergenic |
| TTATTGTTTCAATTCTTGAA+AGG | 0.545710 | 1.1:+69541623 | MS.gene072405:CDS |
| GAGGAGGATCGGACTTGGGA+TGG | 0.549780 | 1.1:+69532914 | MS.gene072405:CDS |
| AGCAGTGTACATTAGACCAC+GGG | 0.556012 | 1.1:+69539366 | MS.gene072405:CDS |
| TTAGATCTACTGAATGAGAC+TGG | 0.557803 | 1.1:-69539588 | None:intergenic |
| GAAGCCTTTATTCGAACGCC+AGG | 0.558193 | 1.1:+69537445 | MS.gene072405:CDS |
| TGAATATGATTTGGCTGTCA+GGG | 0.558997 | 1.1:+69537657 | MS.gene072405:CDS |
| CGAAGAAAACTGAAGTAATG+TGG | 0.559740 | 1.1:-69535722 | None:intergenic |
| AGCGTATTGGAATTGAACTT+GGG | 0.559889 | 1.1:+69543025 | MS.gene072405:CDS |
| AATGCACCTTCTGATCTTGG+AGG | 0.560054 | 1.1:+69543111 | MS.gene072405:CDS |
| GCACCTTCTGATCTTGGAGG+AGG | 0.561034 | 1.1:+69543114 | MS.gene072405:CDS |
| TGGCATCACTCATGTAGGAC+CGG | 0.561726 | 1.1:-69541355 | None:intergenic |
| GGCTGTCAGGGAGTACAAGA+AGG | 0.563980 | 1.1:+69537669 | MS.gene072405:CDS |
| AGTGCAACCTTCCAGAAAGC+TGG | 0.564155 | 1.1:-69539682 | None:intergenic |
| GGTTGAACGTAGTTAGCGAC+GGG | 0.564760 | 1.1:-69532704 | None:intergenic |
| ACCGCGAAACCTCAAACGAA+AGG | 0.566816 | 1.1:+69532764 | MS.gene072405:CDS |
| AGGCTCTTTCTGATGCCAGA+TGG | 0.567609 | 1.1:+69539426 | MS.gene072405:CDS |
| CTCAGCTGTATCTTCAGCAA+TGG | 0.568432 | 1.1:+69541690 | MS.gene072405:CDS |
| TAGAGGAATCAAATGTCCTC+CGG | 0.571367 | 1.1:+69541336 | MS.gene072405:CDS |
| TATCCGTGGCAGCATTAGCA+AGG | 0.572993 | 1.1:+69537633 | MS.gene072405:CDS |
| AGGTGTCGAAGGATGTCTCA+TGG | 0.575149 | 1.1:+69541599 | MS.gene072405:CDS |
| ACAGTCATTCCCTCGTGGCA+TGG | 0.576315 | 1.1:+69535605 | MS.gene072405:CDS |
| TAGTATTTCTAGCGGTGATG+AGG | 0.576767 | 1.1:+69532829 | MS.gene072405:CDS |
| AGATCTAACTGGTGAAGAGG+TGG | 0.577494 | 1.1:+69539603 | MS.gene072405:CDS |
| TATTCAAGGAGTTAGTTCGC+AGG | 0.578647 | 1.1:+69537409 | MS.gene072405:CDS |
| TGAAGACGAGCTTCTCCAGA+TGG | 0.579001 | 1.1:+69532619 | MS.gene072405:CDS |
| GAGCGTTTCGGTTGAGACGA+CGG | 0.579201 | 1.1:-69532728 | None:intergenic |
| TTTCAGTGGAAAGTTTGCTA+AGG | 0.579251 | 1.1:+69539711 | MS.gene072405:CDS |
| CTGAGCGGAATGTTAAAGGC+AGG | 0.579566 | 1.1:-69541672 | None:intergenic |
| TAACATATTTCATGATCTAG+AGG | 0.579770 | 1.1:+69541319 | MS.gene072405:CDS |
| GTTGGATTTGGAGCCAGAGT+CGG | 0.580175 | 1.1:+69538731 | MS.gene072405:CDS |
| CAGTAGGTTTATACATGAGA+GGG | 0.581536 | 1.1:-69537709 | None:intergenic |
| TACTGAGCAGAGAAAGCAGT+TGG | 0.581539 | 1.1:+69537060 | MS.gene072405:CDS |
| CGAATTGAGGATGACCCTGA+AGG | 0.581739 | 1.1:+69537359 | MS.gene072405:CDS |
| TCGTTGAAGAATCGAGGGAG+TGG | 0.582471 | 1.1:+69532875 | MS.gene072405:CDS |
| GGATCGGACTTGGGATGGTG+AGG | 0.584375 | 1.1:+69532919 | MS.gene072405:CDS |
| AGTAGATCTAACTGGTGAAG+AGG | 0.584520 | 1.1:+69539600 | MS.gene072405:CDS |
| TATTCAAATAATGCCATACT+GGG | 0.589618 | 1.1:-69538755 | None:intergenic |
| AGGAGAACTGTCTGAAGACT+CGG | 0.593578 | 1.1:-69535820 | None:intergenic |
| TTGGTAGGTTGAAAAGTGTA+CGG | 0.593735 | 1.1:-69537606 | None:intergenic |
| ATCAGTTGAAGAGGTGTCGA+AGG | 0.598476 | 1.1:+69541588 | MS.gene072405:CDS |
| AATACTAAGCATCTCCACTT+CGG | 0.599165 | 1.1:-69532813 | None:intergenic |
| GGAAACAAGGACGGCACCTG+TGG | 0.601069 | 1.1:+69535509 | MS.gene072405:CDS |
| TCATTGCGGAAACTTCATCA+AGG | 0.604122 | 1.1:-69540120 | None:intergenic |
| TTCAATGGCATCACTCATGT+AGG | 0.604601 | 1.1:-69541360 | None:intergenic |
| TGGAGTGCTGCCAGATATGT+CGG | 0.606372 | 1.1:-69543227 | None:intergenic |
| CTGTCCAAGGGATGCTACAG+AGG | 0.607097 | 1.1:+69537581 | MS.gene072405:CDS |
| ACAGTAGGTTTATACATGAG+AGG | 0.607437 | 1.1:-69537710 | None:intergenic |
| CTATTGGAATTTGAATCTGT+GGG | 0.607795 | 1.1:-69540043 | None:intergenic |
| CATTGCGGAAACTTCATCAA+GGG | 0.607952 | 1.1:-69540119 | None:intergenic |
| TCATATACCAGCTTTCTGGA+AGG | 0.610847 | 1.1:+69539675 | MS.gene072405:CDS |
| AGAGGGAAGAGCAATTGACT+TGG | 0.611105 | 1.1:-69537692 | None:intergenic |
| CAAGTCCATACCGTCGATTG+TGG | 0.611201 | 1.1:-69537119 | None:intergenic |
| ACGCCTCCTCCAAGATCAGA+AGG | 0.612055 | 1.1:-69543117 | None:intergenic |
| TCGTAGGGTTCGTGAAATGA+GGG | 0.612594 | 1.1:+69535488 | MS.gene072405:CDS |
| GGTGTCGAAGGATGTCTCAT+GGG | 0.613077 | 1.1:+69541600 | MS.gene072405:CDS |
| GAACTTTACCCCAAACCTAG+TGG | 0.615864 | 1.1:-69535639 | None:intergenic |
| ACGAGGGAATGACTGTAAGT+AGG | 0.616245 | 1.1:-69535598 | None:intergenic |
| TCGAGGGAGTGGAAGAACTC+CGG | 0.618008 | 1.1:+69532886 | MS.gene072405:CDS |
| GATGCGAGCATCAGTTGAAG+AGG | 0.619132 | 1.1:+69541579 | MS.gene072405:CDS |
| GTTACATCGTTGAAGAATCG+AGG | 0.619621 | 1.1:+69532869 | MS.gene072405:CDS |
| GAATTGAGGATGACCCTGAA+GGG | 0.619638 | 1.1:+69537360 | MS.gene072405:CDS |
| ACTGAATGAGACTGGACCGC+AGG | 0.620192 | 1.1:-69539580 | None:intergenic |
| CAACATAGCTCACACAGAGA+AGG | 0.621313 | 1.1:+69543048 | MS.gene072405:CDS |
| ACAATCAATAACTGTTGATG+GGG | 0.622342 | 1.1:-69543147 | None:intergenic |
| GTGTTGATCCACTAGGTTTG+GGG | 0.623025 | 1.1:+69535631 | MS.gene072405:CDS |
| TTCGTGAAATGAGGGAAACA+AGG | 0.623993 | 1.1:+69535496 | MS.gene072405:CDS |
| ATGGTGAGGAGCCTAGTCGT+TGG | 0.625615 | 1.1:+69532933 | MS.gene072405:CDS |
| CGGTTGAACGTAGTTAGCGA+CGG | 0.626399 | 1.1:-69532705 | None:intergenic |
| ACCAATACCAATAAACCACC+AGG | 0.626830 | 1.1:-69535756 | None:intergenic |
| TCACAACGAGATCTCAACTA+CGG | 0.630699 | 1.1:+69532656 | MS.gene072405:CDS |
| CTAACTGGTGAAGAGGTGGA+TGG | 0.633022 | 1.1:+69539607 | MS.gene072405:CDS |
| TCAACATGCTTCCAACGACT+AGG | 0.633271 | 1.1:-69532944 | None:intergenic |
| TGAAATGAGGGAAACAAGGA+CGG | 0.634069 | 1.1:+69535500 | MS.gene072405:CDS |
| TGATGACGATGATTCCGAAG+TGG | 0.634924 | 1.1:+69532799 | MS.gene072405:CDS |
| TTCGGAGGGATTAATCCTGG+TGG | 0.636941 | 1.1:+69535741 | MS.gene072405:CDS |
| GTATTTCTTTAGATTCAGGT+AGG | 0.638317 | 1.1:+69537891 | MS.gene072405:intron |
| TTACATCGTTGAAGAATCGA+GGG | 0.639118 | 1.1:+69532870 | MS.gene072405:CDS |
| CAGTTCTCCTAAGACTGACA+AGG | 0.642066 | 1.1:+69535833 | MS.gene072405:CDS |
| ATCCGTGGCAGCATTAGCAA+GGG | 0.649080 | 1.1:+69537634 | MS.gene072405:CDS |
| ATGGAATGTGTTGATCCACT+AGG | 0.649820 | 1.1:+69535624 | MS.gene072405:CDS |
| TCTTGTAAAACCACAATCGA+CGG | 0.650818 | 1.1:+69537109 | MS.gene072405:CDS |
| GCTTCGATCCTTAAGGAGTG+AGG | 0.661393 | 1.1:+69542752 | MS.gene072405:CDS |
| GAGCAGTGTACATTAGACCA+CGG | 0.672896 | 1.1:+69539365 | MS.gene072405:CDS |
| AACCTACCAAGTACTATCCG+TGG | 0.673497 | 1.1:+69537619 | MS.gene072405:CDS |
| TACAAGTGCTGCTGACCTGG+AGG | 0.675876 | 1.1:+69537000 | MS.gene072405:CDS |
| TCACAGAATCAGAGAATACG+TGG | 0.678297 | 1.1:+69539335 | MS.gene072405:intron |
| GAAGCATGTTGATGAAGCTG+AGG | 0.682725 | 1.1:+69532955 | MS.gene072405:CDS |
| GAGATGCTTAGTATTTCTAG+CGG | 0.697331 | 1.1:+69532821 | MS.gene072405:CDS |
| CATCACTCATGTAGGACCGG+AGG | 0.702712 | 1.1:-69541352 | None:intergenic |
| CGTTTCGGTTGAGACGACGG+CGG | 0.702993 | 1.1:-69532725 | None:intergenic |
| TACTTACAGTCATTCCCTCG+TGG | 0.703042 | 1.1:+69535600 | MS.gene072405:CDS |
| TCAACACATTCCATGCCACG+AGG | 0.705544 | 1.1:-69535615 | None:intergenic |
| TATCAACAACTCCTATCCTG+CGG | 0.706573 | 1.1:+69539564 | MS.gene072405:CDS |
| TAATTGATACCTGCAACCGG+AGG | 0.710536 | 1.1:-69541428 | None:intergenic |
| TGCCACGGATAGTACTTGGT+AGG | 0.711375 | 1.1:-69537621 | None:intergenic |
| GGAGTGGAAGAACTCCGGCG+AGG | 0.715263 | 1.1:+69532891 | MS.gene072405:CDS |
| TATTGTGCTGCATATCATTG+CGG | 0.729492 | 1.1:-69540134 | None:intergenic |
| CAACACATTCCATGCCACGA+GGG | 0.730428 | 1.1:-69535614 | None:intergenic |
| TTTCGTTTGAGGTTTCGCGG+TGG | 0.749694 | 1.1:-69532762 | None:intergenic |
| GACGCTGATAGCAACCTACG+TGG | 0.752006 | 1.1:+69535855 | MS.gene072405:CDS |
| TTGCTGAAGATACAGCTGAG+CGG | 0.772135 | 1.1:-69541687 | None:intergenic |
| TATATGATGGATGATTACAG+CGG | 0.782568 | 1.1:-69539659 | None:intergenic |
| TGTAGCTTGAGAATACAGTG+AGG | 0.785722 | 1.1:+69538703 | MS.gene072405:intron |
| GCAGTGTACATTAGACCACG+GGG | 0.811185 | 1.1:+69539367 | MS.gene072405:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 69532602 | 69544686 | 69532602 | ID=MS.gene072405 |
| chr1.1 | mRNA | 69532602 | 69544686 | 69532602 | ID=MS.gene072405.t1;Parent=MS.gene072405 |
| chr1.1 | exon | 69532602 | 69532976 | 69532602 | ID=MS.gene072405.t1.exon1;Parent=MS.gene072405.t1 |
| chr1.1 | CDS | 69532602 | 69532976 | 69532602 | ID=cds.MS.gene072405.t1;Parent=MS.gene072405.t1 |
| chr1.1 | exon | 69535483 | 69535652 | 69535483 | ID=MS.gene072405.t1.exon2;Parent=MS.gene072405.t1 |
| chr1.1 | CDS | 69535483 | 69535652 | 69535483 | ID=cds.MS.gene072405.t1;Parent=MS.gene072405.t1 |
| chr1.1 | exon | 69535710 | 69535876 | 69535710 | ID=MS.gene072405.t1.exon3;Parent=MS.gene072405.t1 |
| chr1.1 | CDS | 69535710 | 69535876 | 69535710 | ID=cds.MS.gene072405.t1;Parent=MS.gene072405.t1 |
| chr1.1 | exon | 69536936 | 69537130 | 69536936 | ID=MS.gene072405.t1.exon4;Parent=MS.gene072405.t1 |
| chr1.1 | CDS | 69536936 | 69537130 | 69536936 | ID=cds.MS.gene072405.t1;Parent=MS.gene072405.t1 |
| chr1.1 | exon | 69537339 | 69537466 | 69537339 | ID=MS.gene072405.t1.exon5;Parent=MS.gene072405.t1 |
| chr1.1 | CDS | 69537339 | 69537466 | 69537339 | ID=cds.MS.gene072405.t1;Parent=MS.gene072405.t1 |
| chr1.1 | exon | 69537559 | 69537717 | 69537559 | ID=MS.gene072405.t1.exon6;Parent=MS.gene072405.t1 |
| chr1.1 | CDS | 69537559 | 69537717 | 69537559 | ID=cds.MS.gene072405.t1;Parent=MS.gene072405.t1 |
| chr1.1 | exon | 69537903 | 69538013 | 69537903 | ID=MS.gene072405.t1.exon7;Parent=MS.gene072405.t1 |
| chr1.1 | CDS | 69537903 | 69538013 | 69537903 | ID=cds.MS.gene072405.t1;Parent=MS.gene072405.t1 |
| chr1.1 | exon | 69538708 | 69538782 | 69538708 | ID=MS.gene072405.t1.exon8;Parent=MS.gene072405.t1 |
| chr1.1 | CDS | 69538708 | 69538782 | 69538708 | ID=cds.MS.gene072405.t1;Parent=MS.gene072405.t1 |
| chr1.1 | exon | 69539341 | 69539478 | 69539341 | ID=MS.gene072405.t1.exon9;Parent=MS.gene072405.t1 |
| chr1.1 | CDS | 69539341 | 69539478 | 69539341 | ID=cds.MS.gene072405.t1;Parent=MS.gene072405.t1 |
| chr1.1 | exon | 69539559 | 69539732 | 69539559 | ID=MS.gene072405.t1.exon10;Parent=MS.gene072405.t1 |
| chr1.1 | CDS | 69539559 | 69539732 | 69539559 | ID=cds.MS.gene072405.t1;Parent=MS.gene072405.t1 |
| chr1.1 | exon | 69540031 | 69540174 | 69540031 | ID=MS.gene072405.t1.exon11;Parent=MS.gene072405.t1 |
| chr1.1 | CDS | 69540031 | 69540174 | 69540031 | ID=cds.MS.gene072405.t1;Parent=MS.gene072405.t1 |
| chr1.1 | exon | 69541314 | 69541440 | 69541314 | ID=MS.gene072405.t1.exon12;Parent=MS.gene072405.t1 |
| chr1.1 | CDS | 69541314 | 69541440 | 69541314 | ID=cds.MS.gene072405.t1;Parent=MS.gene072405.t1 |
| chr1.1 | exon | 69541515 | 69541725 | 69541515 | ID=MS.gene072405.t1.exon13;Parent=MS.gene072405.t1 |
| chr1.1 | CDS | 69541515 | 69541725 | 69541515 | ID=cds.MS.gene072405.t1;Parent=MS.gene072405.t1 |
| chr1.1 | exon | 69542749 | 69542864 | 69542749 | ID=MS.gene072405.t1.exon14;Parent=MS.gene072405.t1 |
| chr1.1 | CDS | 69542749 | 69542864 | 69542749 | ID=cds.MS.gene072405.t1;Parent=MS.gene072405.t1 |
| chr1.1 | exon | 69543016 | 69543250 | 69543016 | ID=MS.gene072405.t1.exon15;Parent=MS.gene072405.t1 |
| chr1.1 | CDS | 69543016 | 69543250 | 69543016 | ID=cds.MS.gene072405.t1;Parent=MS.gene072405.t1 |
| chr1.1 | exon | 69544593 | 69544686 | 69544593 | ID=MS.gene072405.t1.exon16;Parent=MS.gene072405.t1 |
| chr1.1 | CDS | 69544593 | 69544686 | 69544593 | ID=cds.MS.gene072405.t1;Parent=MS.gene072405.t1 |
| Gene Sequence |
| Protein sequence |
