AlfalfaGEDB | MS.gene050213

M. sativa cultivar XinJiangDaYe / MS.gene050213

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050213.t1	XP_024640583.1	99.5	386	2	0	1	386	618	1003	1.10E-213	752.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050213.t1	Q9Z160	24.8	303	199	5	30	328	638	915	1.4e-18	95.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050213.t1	A0A396JZ67	99.5	386	2	0	1	386	618	1003	8.1e-214	752.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049193	MS.gene050213	0.803696	3.08E-49	-1.69E-46
MS.gene049283	MS.gene050213	0.800424	1.45E-48	-1.69E-46
MS.gene050085	MS.gene050213	0.806517	7.92E-50	-1.69E-46
MS.gene050213	MS.gene050257	0.800542	1.37E-48	-1.69E-46
MS.gene050213	MS.gene050348	0.80728	5.46E-50	-1.69E-46
MS.gene050213	MS.gene050551	0.812195	4.79E-51	-1.69E-46
MS.gene050213	MS.gene050654	0.817136	3.86E-52	-1.69E-46
MS.gene050213	MS.gene050931	0.817884	2.62E-52	-1.69E-46
MS.gene050213	MS.gene051209	0.824803	6.62E-54	-1.69E-46
MS.gene050213	MS.gene052307	0.830226	3.31E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 87 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTCACTTACCCTCCC+AGG	0.568735	1.1:-67031744	None:intergenic
AAACAAACCTCAACTCTAAA+AGG	0.284126	1.1:+67031529	MS.gene050213:CDS
AAACCGGCTTTCTCAGAGAC+TGG	0.473732	1.1:+67034681	MS.gene050213:CDS
AAAGGTATGAACCATATCTC+TGG	0.433620	1.1:+67034991	MS.gene050213:intron
AAATCTCTTCAAGAAGTTCA+TGG	0.404740	1.1:+67036110	MS.gene050213:CDS
AACTGTAGATGCATTCCCAC+TGG	0.555315	1.1:-67031433	None:intergenic
AACTTTGAGCACGCCTGGGA+GGG	0.546184	1.1:+67031731	MS.gene050213:CDS
AAGAGATTTCATTTGAAGAT+GGG	0.456289	1.1:-67036096	None:intergenic
AAGGTATGAACCATATCTCT+GGG	0.568167	1.1:+67034992	MS.gene050213:intron
AATATCAAACTGACCTGATG+GGG	0.614646	1.1:-67035166	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGATACAGTTTCAGTG+AGG	+	chr1.1:67034305-67034324	MS.gene050213:intron	30.0%
AAACAAACCTCAACTCTAAA+AGG	+	chr1.1:67031529-67031548	MS.gene050213:CDS	30.0%
AAATCTCTTCAAGAAGTTCA+TGG	+	chr1.1:67036110-67036129	MS.gene050213:CDS	30.0%
AACATACATGTGAACAACTA+AGG	+	chr1.1:67032150-67032169	MS.gene050213:intron	30.0%
AAGTAACACCACTTAACTTA+AGG	-	chr1.1:67032744-67032763	None:intergenic	30.0%
AATTGGTCAAATGGGAATAA+CGG	-	chr1.1:67032076-67032095	None:intergenic	30.0%
ACAAACTTACATCTTAATCG+TGG	+	chr1.1:67036022-67036041	MS.gene050213:intron	30.0%
ACGGAAAATGAATAAACAAC+AGG	-	chr1.1:67031781-67031800	None:intergenic	30.0%
ACTTCTGTGTATTCTTAACT+TGG	-	chr1.1:67033997-67034016	None:intergenic	30.0%
AGAGATTTCATTTGAAGATG+GGG	-	chr1.1:67036098-67036117	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	67031425	67036228	67031425	ID=MS.gene050213
chr1.1	mRNA	67031425	67036228	67031425	ID=MS.gene050213.t1;Parent=MS.gene050213
chr1.1	exon	67031425	67031752	67031425	ID=MS.gene050213.t1.exon1;Parent=MS.gene050213.t1
chr1.1	CDS	67031425	67031752	67031425	ID=cds.MS.gene050213.t1;Parent=MS.gene050213.t1
chr1.1	exon	67033447	67033641	67033447	ID=MS.gene050213.t1.exon2;Parent=MS.gene050213.t1
chr1.1	CDS	67033447	67033641	67033447	ID=cds.MS.gene050213.t1;Parent=MS.gene050213.t1
chr1.1	exon	67034442	67034722	67034442	ID=MS.gene050213.t1.exon3;Parent=MS.gene050213.t1
chr1.1	CDS	67034442	67034722	67034442	ID=cds.MS.gene050213.t1;Parent=MS.gene050213.t1
chr1.1	exon	67034995	67035174	67034995	ID=MS.gene050213.t1.exon4;Parent=MS.gene050213.t1
chr1.1	CDS	67034995	67035174	67034995	ID=cds.MS.gene050213.t1;Parent=MS.gene050213.t1
chr1.1	exon	67036054	67036228	67036054	ID=MS.gene050213.t1.exon5;Parent=MS.gene050213.t1
chr1.1	CDS	67036054	67036228	67036054	ID=cds.MS.gene050213.t1;Parent=MS.gene050213.t1

Gene Sequence

>MS.gene050213

ATTTTGGGCCAGTGGGAATGCATCTACAGTTGGGAAATTACCATCTCTAGTGAAACATTCTCGTTTTGGATCTGATTCTGCTATCTGTGATAGTCCAGGAAGACAAACAAACCTCAACTCTAAAAGGCAAAATTCTTCTGCCACAGCAGCGTTGTTTGGAGCAAGAGAAGATGCAAGCCATGAATTGGAAGAATTGAATAAGACTATAGGTGATCTATGTATTAGAGCCTACAACTTATGGATACTATGGATGTCAGATGAGCTTGCTGCTATTGTCTCTCAGGATCTTAAACAAGATGATGCCTTAACTTTGAGCACGCCTGGGAGGGTAAGTGACATTTTTTCGTCTTCCCCCTGTTGTTTATTCATTTTCCGTGAATTTTGATGGTTTAAGATTGTTTTTTTCTTATGGTTATATCTTATTATTAGTTTTCCTCCGATCAGCCTTTAATTTTTGTAGAACGATTATCTTCTACAAGAGCTTGTTTGTTGCTTTTACATCTTATTTAATAAAATAGAAATTCCTAAGGCGAGAAGAAAAAACAATGGAAAAAGCATGAACAAGTGGGAAATTGAAGATTAATATTAAAACATAAAACAGTAGTCGGAAAGGCCTTTTAAAAGATATTCTGGTCAAACAAAACTTGTCCGTTATTCCCATTTGACCAATTATATCACACAGGATACCATATAATCATATTCTGATCTGATAAAAACTCTACTGAAACATACATGTGAACAACTAAGGAAATACATGATTTATATTATGTGAAGCTTGGAGCTGATATTATGGAGGAAGCACTGAAGTACTATACCATAATTCATAAATAAATATTACTATTTCGTTAATTAAATTTTCCTAATGTCTTGCCAATGAAATCATCTGTTAGCAGACTGATCCATTTCAACATTCATTTTCTCAGCCTATGAAAACTGATCAAACCAAATTTCTGTTACCGTCACCATCTTTGAGAATTATGACAAGGAATTGAGCAAACCTCATATCCAATTATTTCAGAGCTCTATTGTAAATATTGTTTTGAATCAGTTGAGAATAATTGGATTTTTTATGTGGCTTTGTCTTTGATCAGTTTCCTTTAAGATCCATATTCTTGAAAACAAAGTTTATTGTTTTCCGCAATCATTACCTCAATAGTAGTATTGTACTAGAAATATGCTAACGAGCATGTGATGATAAGGTTTTTTCACCTTAACTTCAATGAATCAGTGGCATTCAGCTTGACTAATTTCCGTCCTTTAAAACTTCCATTGCTCTCAAACCATGCAGTGATACATGCACACAAGTGGAGAACCTTCCTTAAGTTAAGTGGTGTTACTTGGTAGAAAGAGCCACCACTGAAATACCAAGAAGATATTGATATATATATCCCTTAATTGAATTTATTCTAGCAGTTAGCAATTTACCGAGGTTAGTCATGTTAAGACCAAAACAATTGAAATGAATTGAAAATTTGTTAAGGAAGTACATGCTCGCTTTGATATTCTGCGTTCCAATACAAAGAATTTTATGGGTTTTGAATCTTTAACTTTCATCATGTGTTTACTTTGGAAGAGATATTAAATTATAAGATGATATTAAAAACATTGCTTTCAATCGATTTATTAGGAATTCGGTTTTTGTCAGAGCTCAATAGTGCCAGTCAGTGCTTCTAGCAAACATACTTTGAGATTAGTCTTGGCTGTTATAAAGCTTTAGTGATGCCAGCTTAGTTAGCATTACACTTATCATCGTCAACATCATCTTTTCTTTCTCTATATGGAACCTTATACCTTCTGAAAACTCGTGGGCTTTCAATATAGAACTAAATATTTTGCTTACCTTTTTGTAGGGATGGTAGGTACCATCAAAGCATAATAATGTTATTATCATTGCTAATCATTGATAATACGTCTACCACTGCTACTATTCTTTTATTGAGGACTCTTTCTTGGTGATACAAACAACCAAGATCTTATAGCCTTTTAATCTAGAAGTTGCTCATGCTTTTGTTTACTGAACAGGGATGGGAGGATATCGCCGTCAAGCAAGATCAGTCTGATGAGAACCAATCGGAGATGAAAATATCTCTTCCGTCTATGCCTTCTCTATATATAATCTCATTTCTATTTAGAGCGTGTGAAGAAGTTCATCGAGTTGGAGGTCATGTACTTGACAAGAAGATTTTGCATAAACTTGCATCAAGGTTATTGGAAAAGGTAGGTTTTCTGATTTGTTAATCCATTTGATCTTAGTCCACTAGTGTGGCTGTTTTTTTTTTACTCCCAGCCTTTCCTTTAGGTACAATTATTTTTCTATAAATGAATTTTCGTTGAAAAAAAAAGAGTAAATGATGGAGGGGATTATATATCCACAAATTAATAGAATGCAAAAAACAATAAAAAAAATATGAGAAGTGAACTAAGAATGCAGTGCTGCAAATGCTGCATGATCTCTACAATATTCCTCTTGTTACTCTACTGTAGTTTTTTTTTACCTTCTGGGGGTTTTAAAGTCACTTTTGTCCCATTAAATTGATATGATATTTGAGTGTCTTTCTAATTTGAATCCCCAAGTTAAGAATACACAGAAGTTAGTCTGTGATATGTGGTATTTTCTTTGTCAGCTTACTTAAAATGGAGATAATTTGTAATCTTTGATCAATTTCTGATAGAAAATTTAGTTGGTATTCTTAAATTGACACATCCACTGTCAAATTTTATAGCTACTATGCAATTATGACATGTGACACTAAGATTTCAGAGAAATGAATCATAATGTCCCCAAGACCATACTGTTCCCACTTTTAAAGACCACTTTTAAGTAATTTATTGAAACACTAGAATGAATTATGAGTAAGTGGCTAAAGAGAATTGAAAAATAAAATGATACAGTTTCAGTGAGGCCCTTTATGCACCAGATGATGGATTATCAAGTAAATTTGAACATACAATGAGGCCCTCTATGTGCTTGACTTATTGTACATTTGTATATACAATGACTGTATTTTATCATACAGGTAGTTGGAATCTTTGAGGCCTTTCTTTCCACTGAAGTGGGTGGTGCTCATCAAGTGACAGAAAAAGGAGTCTTGCAGCTTTTGTTAGATGTCAAATTTGTCATTGATGTTCTCTCTGGTGGTGATTCAAATTTGGTTGGGGAATTATCTAGTAACCCAAAGGCAAAGTCTTCTCTTAGAAGAAAGCAGGGCCAAAGTTTGACAATCTCAGCCATTAGAGAACGGTCTAATCAGTTGTTAAACCGGCTTTCTCAGAGACTGGATCCTATAGACTGGCTTACGTAAGTTTCTCATTATTCTGTTCAAGCTTTTTCTTTCTTTCGATTCAACAGTACATCGGAAGGACCATCAGAGCACAGTTCATGGTGGCTTATGGAATAATAACTAAATTAGGGAAAATATAGGAAAAAGACTGATTGTAGACTGTAGTGTGTGTTTCTTGTGCAAGGATAAATTAGTAATGGGCAATAGTTTTTCTTTTAGTGATTGTTTGCTGTCATCTCAAGTTTTCTCCTTATAATCTGACAATGATTTCTTATCTACATGTGTAAAGGTATGAACCATATCTCTGGGAGAATGAGAGGCAATCGTATCTACGACATGCTGTTCTTTTTGGTTTCTTTGTGCAACTTAATCGAATGTACACAGATACTGTACAGAAACTGCCTACTAATTCAGAATCTAATACTCTGAGGTGTTCTACAGTTCCCCGGTTTAAATACCTCCCCATCAGGTCAGTTTGATATTGTAATTTATCTATTCTTTGTCCATCTTTTTACAGTGCACAGCTTTTTGCCAGTCTCTCTTACCATCATTCTGTATATATTTTTTAATTTAAATTCAATTATTTATTCCGTTGACTGAGGCTTTCTATATATTTTTTTTATTTCCTTCTTTTTATCATTACATGTGATATAGGGTCCGTTTGTTATAAATTTTAAAAAAAATAGAAAATTGCTTGTATTATTTTTATGAAAACGTATCCAAAAAAAAAAAATAGTAAAAGTTATTTCAAACTCATTTGTTATAAATTAAAAGTGTAATTTTGACATTCATTAATTTAGATATGCATTGTTATAAACTTAACATTATAAAAACCACATACTTTTTCAAAAAGATATCTCTCAAAAATGATTTTTCATTTTAAGCATTTTTTGATATTTTATTATCCCTAAAAGTTGTACCAAAAGGATGAAATACTAAAAATGACTTTCTATGAGAAGCTATTCGAACTAATTTCTCATTTGAAGCTTTCTTTACAAATTCTTAGTTAAAAAAATTATAGCAAAAATATGATATGCTATAAAAATCATTTTTAAAAAAAAGCTATAACAGACCCCTTAGCTTCCCATAGATAGGGTAAATATACAGCTCAACTGTAATCCCTCTTAATCCTCATAATACTAGAGGTTCCTTTTTCTCTACAGCATGTGTTAGACTTTATATTGTATCATTCCTAATTTAACAAGACAAGAAATTCATCAGTTTCAAGTTATTCAATGACTTTTACGGCAGATCTGCTAACAAACCTTTTAATATACCAAAGCTAGTAATTGACAACCTAAAATTTCTTCTTATTTACAAACTTACATCTTAATCGTGGTAAATCCAGTGCTCCAGCATTGTCCTCTAGAGGGCCAAAGAAGACATTCACCCCATCTTCAAATGAAATCTCTTCAAGAAGTTCATGGAATTCAATTACAAATGGAGATCTTTCTCAAAAGATAAATCTGGATGACAGCTCAAGTCTTGGGGTGGCAGCACCATTTTTGAAGTCTTTCATGCAA

Protein sequence

>MS.gene050213.t1

ILGQWECIYSWEITISSETFSFWIUFCYLUUSRKTNKPQLUKAKFFCHSSVVWSKRRCKPUIGRIEUDYRUSMYUSLQLMDTMDVRUACCYCLSGSUTRUCLNFEHAWEGMGGYRRQARSVUUEPIGDENISSVYAFSIYNLISIUSVURSSSSWRSCTUQEDFAUTCIKVIGKGSWNLUGLSFHUSGWCSSSDRKRSLAAFVRCQICHUCSLWWUFKFGWGIIUUPKGKVFSUKKAGPKFDNLSHURTVUSVVKPAFSETGSYRLAYVUTISLGEUEAIVSTTCCSFWFLCATUSNVHRYCTETAYUFRIUYSEVFYSSPVUIPPHQCSSIVLURAKEDIHPIFKUNLFKKFMEFNYKWRSFSKDKSGUQLKSWGGSTIFEVFHA