Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072508.t1 | XP_003626231.1 | 98.8 | 163 | 2 | 0 | 1 | 163 | 1 | 163 | 1.50E-82 | 315.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072508.t1 | O65729 | 86.4 | 162 | 21 | 1 | 4 | 165 | 1 | 161 | 4.9e-74 | 278.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072508.t1 | B7FMF5 | 98.8 | 163 | 2 | 0 | 1 | 163 | 1 | 163 | 1.1e-82 | 315.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050916 | MS.gene072508 | 0.929241 | 9.21E-93 | -1.69E-46 |
| MS.gene051330 | MS.gene072508 | 0.83767 | 4.53E-57 | -1.69E-46 |
| MS.gene051903 | MS.gene072508 | 0.816949 | 4.25E-52 | -1.69E-46 |
| MS.gene06001 | MS.gene072508 | 0.819062 | 1.41E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072508.t1 | MTR_7g112880 | 98.788 | 165 | 2 | 0 | 1 | 165 | 1 | 165 | 4.38e-118 | 331 |
| MS.gene072508.t1 | MTR_7g108805 | 88.485 | 165 | 19 | 0 | 1 | 165 | 1 | 165 | 3.57e-106 | 301 |
| MS.gene072508.t1 | MTR_1g083460 | 86.667 | 165 | 22 | 0 | 1 | 165 | 1 | 165 | 3.85e-105 | 299 |
| MS.gene072508.t1 | MTR_7g112880 | 98.214 | 112 | 2 | 0 | 54 | 165 | 1 | 112 | 1.46e-77 | 227 |
| MS.gene072508.t1 | MTR_4g005170 | 84.848 | 33 | 5 | 0 | 133 | 165 | 582 | 614 | 2.01e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072508.t1 | AT5G27850 | 81.212 | 165 | 31 | 0 | 1 | 165 | 1 | 165 | 3.20e-99 | 284 |
| MS.gene072508.t1 | AT3G05590 | 80.606 | 165 | 32 | 0 | 1 | 165 | 1 | 165 | 2.11e-98 | 281 |
| MS.gene072508.t1 | AT2G47570 | 76.829 | 164 | 37 | 1 | 3 | 165 | 1 | 164 | 1.37e-90 | 262 |
| MS.gene072508.t1 | AT3G05590 | 79.464 | 112 | 23 | 0 | 54 | 165 | 1 | 112 | 4.96e-65 | 195 |
| MS.gene072508.t1 | AT3G05590 | 79.464 | 112 | 23 | 0 | 54 | 165 | 1 | 112 | 4.96e-65 | 195 |
| MS.gene072508.t1 | AT5G27850 | 78.571 | 112 | 24 | 0 | 54 | 165 | 1 | 112 | 6.09e-64 | 192 |
Find 57 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGCTTCCCTAGCATTCTT+TGG | 0.206364 | 7.3:-3970124 | None:intergenic |
| ATCAACTTTGACAGAGAAAT+TGG | 0.227766 | 7.3:-3969362 | None:intergenic |
| TAGCATTCTTTGGGCCTCTT+AGG | 0.233236 | 7.3:-3970114 | None:intergenic |
| AGGTAGATATCATTGGATTT+AGG | 0.281327 | 7.3:-3967947 | None:intergenic |
| GGTAAAATTGGTGTCGTTGT+GGG | 0.314974 | 7.3:+3969517 | MS.gene072508:CDS |
| CTGCTTCCCTAGCATTCTTT+GGG | 0.325698 | 7.3:-3970123 | None:intergenic |
| GGGCTGTAACAGATGATATC+AGG | 0.365645 | 7.3:+3969539 | MS.gene072508:CDS |
| TATATCGCTTCCTTGTTAGA+AGG | 0.375930 | 7.3:+3969276 | MS.gene072508:CDS |
| GTTATGCAGGACGGTAAAAT+TGG | 0.388471 | 7.3:+3969505 | MS.gene072508:intron |
| GGATTTAGGTTCGGTTCGTT+TGG | 0.400306 | 7.3:-3967933 | None:intergenic |
| GAGCTTGAGGTAGATATCAT+TGG | 0.411467 | 7.3:-3967954 | None:intergenic |
| CTTTGATCTTACATAAGGCT+TGG | 0.418522 | 7.3:-3970188 | None:intergenic |
| CAGGGGATCGATCTCAAAGC+TGG | 0.420599 | 7.3:+3967893 | MS.gene072508:intron |
| GATATCATTGGATTTAGGTT+CGG | 0.438911 | 7.3:-3967942 | None:intergenic |
| TCTGTCCAAGGGGAGCTCTA+AGG | 0.443443 | 7.3:-3969669 | None:intergenic |
| GGGCAAGTTGATCAAATGTT+AGG | 0.445307 | 7.3:-3969648 | None:intergenic |
| CGGTAAAATTGGTGTCGTTG+TGG | 0.446137 | 7.3:+3969516 | MS.gene072508:CDS |
| GTGCCGTCTCTGTGAACCTA+AGG | 0.461512 | 7.3:-3969594 | None:intergenic |
| AAACACTTTGGTCGTGCTCC+TGG | 0.468460 | 7.3:+3970148 | MS.gene072508:CDS |
| CTGTCCAAGGGGAGCTCTAA+GGG | 0.473811 | 7.3:-3969668 | None:intergenic |
| GTAAAATTGGTGTCGTTGTG+GGG | 0.476743 | 7.3:+3969518 | MS.gene072508:CDS |
| CATTCTTTGGGCCTCTTAGG+AGG | 0.481833 | 7.3:-3970111 | None:intergenic |
| TAAGAGGCCCAAAGAATGCT+AGG | 0.491610 | 7.3:+3970116 | MS.gene072508:CDS |
| TGAATTCAGGTCCTCCTAAG+AGG | 0.506122 | 7.3:+3970100 | MS.gene072508:intron |
| GAATGGCTGTGTGGCACACC+AGG | 0.520029 | 7.3:-3970166 | None:intergenic |
| CTCATACCGTGTTCTGTCCA+AGG | 0.524348 | 7.3:-3969681 | None:intergenic |
| ATCTTACATAAGGCTTGGAA+TGG | 0.527336 | 7.3:-3970183 | None:intergenic |
| TGCCCTTAGGTTCACAGAGA+CGG | 0.538036 | 7.3:+3969591 | MS.gene072508:CDS |
| AAAGTTGATCGAGTACATGA+AGG | 0.551641 | 7.3:+3969376 | MS.gene072508:CDS |
| AAGTTGATCGAGTACATGAA+GGG | 0.557741 | 7.3:+3969377 | MS.gene072508:CDS |
| GGACCTTGACGAGGAGCTTG+AGG | 0.569815 | 7.3:-3967967 | None:intergenic |
| AGGGGATCGATCTCAAAGCT+GGG | 0.574140 | 7.3:+3967894 | MS.gene072508:intron |
| CTTGCCCTTAGAGCTCCCCT+TGG | 0.575267 | 7.3:+3969664 | MS.gene072508:CDS |
| TGCTGTCAGTCCTTCTAACA+AGG | 0.579764 | 7.3:-3969286 | None:intergenic |
| GGCTGTAACAGATGATATCA+GGG | 0.589836 | 7.3:+3969540 | MS.gene072508:CDS |
| AGGGAAGCAGTAAAACACTT+TGG | 0.592083 | 7.3:+3970136 | MS.gene072508:CDS |
| TCATACCGTGTTCTGTCCAA+GGG | 0.595030 | 7.3:-3969680 | None:intergenic |
| CAAGCGCTTGTTCATGAGCA+AGG | 0.595633 | 7.3:+3969328 | MS.gene072508:CDS |
| AACTTTGACAGAGAAATTGG+AGG | 0.595797 | 7.3:-3969359 | None:intergenic |
| CGTGCAAGAATAGAGAAGGC+GGG | 0.608166 | 7.3:+3969616 | MS.gene072508:CDS |
| TTGACAGAGAAATTGGAGGT+CGG | 0.608358 | 7.3:-3969355 | None:intergenic |
| AGCTCCCCTTGGACAGAACA+CGG | 0.610780 | 7.3:+3969675 | MS.gene072508:CDS |
| TGCCGTCTCTGTGAACCTAA+GGG | 0.611665 | 7.3:-3969593 | None:intergenic |
| CTACCTCAAGCTCCTCGTCA+AGG | 0.612377 | 7.3:+3967964 | MS.gene072508:CDS |
| TAAAATTGGTGTCGTTGTGG+GGG | 0.613763 | 7.3:+3969519 | MS.gene072508:CDS |
| GGCACGTGCAAGAATAGAGA+AGG | 0.623253 | 7.3:+3969612 | MS.gene072508:CDS |
| AAGAGGCCCAAAGAATGCTA+GGG | 0.636036 | 7.3:+3970117 | MS.gene072508:CDS |
| GGGGATCGATCTCAAAGCTG+GGG | 0.637375 | 7.3:+3967895 | MS.gene072508:intron |
| AAATGGAATGGACCTTGACG+AGG | 0.641410 | 7.3:-3967976 | None:intergenic |
| AGTTGATCGAGTACATGAAG+GGG | 0.649783 | 7.3:+3969378 | MS.gene072508:CDS |
| GATCGAGTACATGAAGGGGA+AGG | 0.663524 | 7.3:+3969382 | MS.gene072508:CDS |
| ACGTGCAAGAATAGAGAAGG+CGG | 0.663924 | 7.3:+3969615 | MS.gene072508:CDS |
| GCAAGAATAGAGAAGGCGGG+TGG | 0.710757 | 7.3:+3969619 | MS.gene072508:CDS |
| CATACCGTGTTCTGTCCAAG+GGG | 0.721874 | 7.3:-3969679 | None:intergenic |
| GGGATCGATCTCAAAGCTGG+GGG | 0.738953 | 7.3:+3967896 | MS.gene072508:CDS |
| GACTGACAGCAATTTCAATG+CGG | 0.745385 | 7.3:+3969298 | MS.gene072508:CDS |
| TAAGGCTTGGAATGGCTGTG+TGG | 0.750805 | 7.3:-3970175 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACGATAAAATAAAAATTA+TGG | - | chr7.3:3968259-3968278 | None:intergenic | 10.0% |
| !! | AACAAGTATATTAATTAAGT+TGG | - | chr7.3:3970081-3970100 | None:intergenic | 15.0% |
| !! | AACTAAACAATTATAATTTC+TGG | - | chr7.3:3969442-3969461 | None:intergenic | 15.0% |
| !! | AGAATGCAAATTATTTATAA+CGG | - | chr7.3:3968931-3968950 | None:intergenic | 15.0% |
| !!! | ATTTTATAAGACATAGAAAA+TGG | - | chr7.3:3967996-3968015 | None:intergenic | 15.0% |
| !! | AAAAAATGTTTATGATTGTG+TGG | + | chr7.3:3969154-3969173 | MS.gene072508:intron | 20.0% |
| !! | AACTTTGACATTAACAAAAA+TGG | - | chr7.3:3968969-3968988 | None:intergenic | 20.0% |
| !! | AGCTTAATTATCAACAAAAA+TGG | - | chr7.3:3968488-3968507 | None:intergenic | 20.0% |
| !! | CTTTAATATCAATATACTGA+GGG | + | chr7.3:3969097-3969116 | MS.gene072508:intron | 20.0% |
| !! | GTCAAAGTTTATAACATATA+AGG | + | chr7.3:3968980-3968999 | MS.gene072508:intron | 20.0% |
| !! | GTTTATAACATATAAGGATT+TGG | + | chr7.3:3968986-3969005 | MS.gene072508:intron | 20.0% |
| !! | TAATTTGAATTTGATATGCA+GGG | + | chr7.3:3967875-3967894 | MS.gene072508:intron | 20.0% |
| !! | TCTTTAATATCAATATACTG+AGG | + | chr7.3:3969096-3969115 | MS.gene072508:intron | 20.0% |
| !!! | AAATTACTTTTCAATGTATC+AGG | - | chr7.3:3968422-3968441 | None:intergenic | 20.0% |
| !!! | TCATCAATTATAAGAGATTT+TGG | + | chr7.3:3969798-3969817 | MS.gene072508:intron | 20.0% |
| !!! | TTAATATACTTGTTGAATTC+AGG | + | chr7.3:3970087-3970106 | MS.gene072508:intron | 20.0% |
| !!! | TTAATTTGAATTTGATATGC+AGG | + | chr7.3:3967874-3967893 | MS.gene072508:intron | 20.0% |
| ! | AATTATAATGCGAATACATG+TGG | + | chr7.3:3968516-3968535 | MS.gene072508:intron | 25.0% |
| ! | AATTTGAATTTGATATGCAG+GGG | + | chr7.3:3967876-3967895 | MS.gene072508:intron | 25.0% |
| ! | AGAGCTAATATAACAAAACT+TGG | - | chr7.3:3969993-3970012 | None:intergenic | 25.0% |
| ! | ATAAGACATAGAAAATGGAA+TGG | - | chr7.3:3967991-3968010 | None:intergenic | 25.0% |
| ! | ATTCTATCTCCATATGAAAA+TGG | - | chr7.3:3968376-3968395 | None:intergenic | 25.0% |
| ! | TTAAAATAAAATACACTGCG+AGG | - | chr7.3:3968187-3968206 | None:intergenic | 25.0% |
| ! | TTATGTGATTATTGTGATCA+AGG | + | chr7.3:3968045-3968064 | MS.gene072508:intron | 25.0% |
| !! | ACTATGATCTAATTTTCTCA+TGG | + | chr7.3:3969473-3969492 | MS.gene072508:intron | 25.0% |
| !! | CTATGATCTAATTTTCTCAT+GGG | + | chr7.3:3969474-3969493 | MS.gene072508:intron | 25.0% |
| !! | TGGTTTGAATGGTATATTTT+TGG | + | chr7.3:3969854-3969873 | MS.gene072508:intron | 25.0% |
| !!! | ATTTGGTGTCTATTTTAGAT+TGG | + | chr7.3:3969826-3969845 | MS.gene072508:intron | 25.0% |
| !!! | TGCTCTAAAAACACAAATAT+TGG | - | chr7.3:3969713-3969732 | None:intergenic | 25.0% |
| !!! | TTTTAGAGTAGATAGAGATT+AGG | - | chr7.3:3967809-3967828 | None:intergenic | 25.0% |
| AATTATAGTCCTAGACCTTA+CGG | - | chr7.3:3968320-3968339 | None:intergenic | 30.0% | |
| AGGTAGATATCATTGGATTT+AGG | - | chr7.3:3967950-3967969 | None:intergenic | 30.0% | |
| ATAGCTTAAAACACACACTA+AGG | - | chr7.3:3968565-3968584 | None:intergenic | 30.0% | |
| ATCAACTTTGACAGAGAAAT+TGG | - | chr7.3:3969365-3969384 | None:intergenic | 30.0% | |
| ATGCATATACTTAGTCCTAA+TGG | - | chr7.3:3968696-3968715 | None:intergenic | 30.0% | |
| ATGGTTAAAAGTAACATCAC+TGG | - | chr7.3:3969054-3969073 | None:intergenic | 30.0% | |
| GTACAATTGATTATATCCAG+AGG | - | chr7.3:3968882-3968901 | None:intergenic | 30.0% | |
| GTTGGAACTAATTATATTCC+TGG | - | chr7.3:3968844-3968863 | None:intergenic | 30.0% | |
| TATTAAAAATTGCTGCCCTT+AGG | + | chr7.3:3969578-3969597 | MS.gene072508:CDS | 30.0% | |
| TGGTTAAAAGTAACATCACT+GGG | - | chr7.3:3969053-3969072 | None:intergenic | 30.0% | |
| TTGGAACTAATTGTATTCCT+TGG | - | chr7.3:3968148-3968167 | None:intergenic | 30.0% | |
| ! | AAATGTGTTTTCGATCAACT+TGG | - | chr7.3:3968765-3968784 | None:intergenic | 30.0% |
| ! | AAGCCTTATGTAAGATCAAA+GGG | + | chr7.3:3970190-3970209 | MS.gene072508:intron | 30.0% |
| ! | AATTTTATTCCTGGACCTTA+TGG | - | chr7.3:3968626-3968645 | None:intergenic | 30.0% |
| ! | ACTTTTCAATGTATCAGGAA+TGG | - | chr7.3:3968417-3968436 | None:intergenic | 30.0% |
| ! | GATATCATTGGATTTAGGTT+CGG | - | chr7.3:3967945-3967964 | None:intergenic | 30.0% |
| ! | GTTGGAACTAATTTTATTCC+TGG | - | chr7.3:3968635-3968654 | None:intergenic | 30.0% |
| !! | GTCTTCTCTGTATTTAGTTT+TGG | + | chr7.3:3967845-3967864 | MS.gene072508:intron | 30.0% |
| !! | TAGGTGTTTGTTGTTGATAT+AGG | + | chr7.3:3969017-3969036 | MS.gene072508:intron | 30.0% |
| !! | TCTATTTTAGATTGGAGACT+TGG | + | chr7.3:3969834-3969853 | MS.gene072508:intron | 30.0% |
| !!! | AAGAGATTTTGGTGTCTATT+TGG | + | chr7.3:3969809-3969828 | MS.gene072508:intron | 30.0% |
| AACTTTGACAGAGAAATTGG+AGG | - | chr7.3:3969362-3969381 | None:intergenic | 35.0% | |
| AATTATATTCCTGGACCTTC+CGG | - | chr7.3:3968835-3968854 | None:intergenic | 35.0% | |
| ATACTTAGTCCTAATGGTGA+TGG | - | chr7.3:3968690-3968709 | None:intergenic | 35.0% | |
| ATCCATTGCGTCATTATGAT+TGG | + | chr7.3:3969752-3969771 | MS.gene072508:intron | 35.0% | |
| ATCTTACATAAGGCTTGGAA+TGG | - | chr7.3:3970186-3970205 | None:intergenic | 35.0% | |
| ATGGGATTATTGTGTTATGC+AGG | + | chr7.3:3969492-3969511 | MS.gene072508:intron | 35.0% | |
| CTTATGTAAGATCAAAGGGA+AGG | + | chr7.3:3970194-3970213 | MS.gene072508:intron | 35.0% | |
| CTTCCCTTTGATCTTACATA+AGG | - | chr7.3:3970196-3970215 | None:intergenic | 35.0% | |
| CTTTGATCTTACATAAGGCT+TGG | - | chr7.3:3970191-3970210 | None:intergenic | 35.0% | |
| GATTATTGTGTTATGCAGGA+CGG | + | chr7.3:3969496-3969515 | MS.gene072508:intron | 35.0% | |
| TAATGACGCAATGGATAGTA+AGG | - | chr7.3:3969748-3969767 | None:intergenic | 35.0% | |
| TATATCGCTTCCTTGTTAGA+AGG | + | chr7.3:3969276-3969295 | MS.gene072508:CDS | 35.0% | |
| TCATGTAATCAGCATTAGCA+TGG | - | chr7.3:3969073-3969092 | None:intergenic | 35.0% | |
| TCCATTGCGTCATTATGATT+GGG | + | chr7.3:3969753-3969772 | MS.gene072508:intron | 35.0% | |
| TGCAACACATGGAATTAGAA+TGG | - | chr7.3:3969248-3969267 | None:intergenic | 35.0% | |
| TGTTGTTGATATAGGACTTG+AGG | + | chr7.3:3969025-3969044 | MS.gene072508:intron | 35.0% | |
| TTGGCTTCATAAAAGCTTGT+TGG | - | chr7.3:3970062-3970081 | None:intergenic | 35.0% | |
| ! | AAAGTTGATCGAGTACATGA+AGG | + | chr7.3:3969376-3969395 | MS.gene072508:CDS | 35.0% |
| ! | AAGTTGATCGAGTACATGAA+GGG | + | chr7.3:3969377-3969396 | MS.gene072508:CDS | 35.0% |
| ! | AGGGCAGCAATTTTTAATAC+TGG | - | chr7.3:3969577-3969596 | None:intergenic | 35.0% |
| ! | CAAGCCTTATGTAAGATCAA+AGG | + | chr7.3:3970189-3970208 | MS.gene072508:intron | 35.0% |
| ! | GGGCAGCAATTTTTAATACT+GGG | - | chr7.3:3969576-3969595 | None:intergenic | 35.0% |
| ! | TAAGGATTTGGCTTCATGAT+AGG | + | chr7.3:3968998-3969017 | MS.gene072508:intron | 35.0% |
| !! | AATTGTATTCCTTGGCCTTA+CGG | - | chr7.3:3968140-3968159 | None:intergenic | 35.0% |
| AAAGGGAAGGAAACAAGAGA+AGG | + | chr7.3:3970207-3970226 | MS.gene072508:intron | 40.0% | |
| AATGTATCAGGAATGGTTCC+TGG | - | chr7.3:3968410-3968429 | None:intergenic | 40.0% | |
| AGAGGAAGAGTAGAGGATTT+AGG | + | chr7.3:3970239-3970258 | MS.gene072508:intron | 40.0% | |
| AGGGAAGCAGTAAAACACTT+TGG | + | chr7.3:3970136-3970155 | MS.gene072508:CDS | 40.0% | |
| AGTTGATCGAGTACATGAAG+GGG | + | chr7.3:3969378-3969397 | MS.gene072508:CDS | 40.0% | |
| ATAGAATAGCTTCTTCAGCC+AGG | + | chr7.3:3968389-3968408 | MS.gene072508:intron | 40.0% | |
| ATAGCTGATTGTGCAACACA+TGG | - | chr7.3:3969259-3969278 | None:intergenic | 40.0% | |
| GACTGACAGCAATTTCAATG+CGG | + | chr7.3:3969298-3969317 | MS.gene072508:CDS | 40.0% | |
| GAGCTTGAGGTAGATATCAT+TGG | - | chr7.3:3967957-3967976 | None:intergenic | 40.0% | |
| GAGGAAGAGTAGAGGATTTA+GGG | + | chr7.3:3970240-3970259 | MS.gene072508:intron | 40.0% | |
| GGCTGTAACAGATGATATCA+GGG | + | chr7.3:3969540-3969559 | MS.gene072508:CDS | 40.0% | |
| GTTATGCAGGACGGTAAAAT+TGG | + | chr7.3:3969505-3969524 | MS.gene072508:intron | 40.0% | |
| TCCCAATCATAATGACGCAA+TGG | - | chr7.3:3969757-3969776 | None:intergenic | 40.0% | |
| TGGTAAGCTCAACATAACCA+AGG | - | chr7.3:3969973-3969992 | None:intergenic | 40.0% | |
| TTCCTGTGAGTAGTTGTGAT+GGG | + | chr7.3:3969943-3969962 | MS.gene072508:intron | 40.0% | |
| TTGACAGAGAAATTGGAGGT+CGG | - | chr7.3:3969358-3969377 | None:intergenic | 40.0% | |
| ! | CCTCTCAGTCCATTTTCATA+TGG | + | chr7.3:3968364-3968383 | MS.gene072508:intron | 40.0% |
| ! | GATTGGAGACTTGGTTTGAA+TGG | + | chr7.3:3969843-3969862 | MS.gene072508:intron | 40.0% |
| !! | CCATATGAAAATGGACTGAG+AGG | - | chr7.3:3968367-3968386 | None:intergenic | 40.0% |
| !! | GGGCAAGTTGATCAAATGTT+AGG | - | chr7.3:3969651-3969670 | None:intergenic | 40.0% |
| !! | GGTAAAATTGGTGTCGTTGT+GGG | + | chr7.3:3969517-3969536 | MS.gene072508:CDS | 40.0% |
| !! | GTAAAATTGGTGTCGTTGTG+GGG | + | chr7.3:3969518-3969537 | MS.gene072508:CDS | 40.0% |
| !! | TAAAATTGGTGTCGTTGTGG+GGG | + | chr7.3:3969519-3969538 | MS.gene072508:CDS | 40.0% |
| AAATGGAATGGACCTTGACG+AGG | - | chr7.3:3967979-3967998 | None:intergenic | 45.0% | |
| AAGAGGCCCAAAGAATGCTA+GGG | + | chr7.3:3970117-3970136 | MS.gene072508:CDS | 45.0% | |
| AATGTGATCCCAGCTCTATG+AGG | + | chr7.3:3968114-3968133 | MS.gene072508:intron | 45.0% | |
| ACCTTATGGTCTCATAGAGC+TGG | - | chr7.3:3968612-3968631 | None:intergenic | 45.0% | |
| ACGTGCAAGAATAGAGAAGG+CGG | + | chr7.3:3969615-3969634 | MS.gene072508:CDS | 45.0% | |
| ACTGCTTCCCTAGCATTCTT+TGG | - | chr7.3:3970127-3970146 | None:intergenic | 45.0% | |
| AGAGGAAAGAGGAAGAGTAG+AGG | + | chr7.3:3970232-3970251 | MS.gene072508:intron | 45.0% | |
| AGGCTCAGACAAATGTGTGT+TGG | - | chr7.3:3968167-3968186 | None:intergenic | 45.0% | |
| ATCCCATCACAACTACTCAC+AGG | - | chr7.3:3969948-3969967 | None:intergenic | 45.0% | |
| CCTTATGGTCTCATAGAGCT+GGG | - | chr7.3:3968611-3968630 | None:intergenic | 45.0% | |
| CTGCTTCCCTAGCATTCTTT+GGG | - | chr7.3:3970126-3970145 | None:intergenic | 45.0% | |
| CTTCCTGTGAGTAGTTGTGA+TGG | + | chr7.3:3969942-3969961 | MS.gene072508:intron | 45.0% | |
| GGGCTGTAACAGATGATATC+AGG | + | chr7.3:3969539-3969558 | MS.gene072508:CDS | 45.0% | |
| TAAGAGGCCCAAAGAATGCT+AGG | + | chr7.3:3970116-3970135 | MS.gene072508:CDS | 45.0% | |
| TAGCATTCTTTGGGCCTCTT+AGG | - | chr7.3:3970117-3970136 | None:intergenic | 45.0% | |
| TCATACCGTGTTCTGTCCAA+GGG | - | chr7.3:3969683-3969702 | None:intergenic | 45.0% | |
| TCTACTCTTCCTCTTTCCTC+TGG | - | chr7.3:3970233-3970252 | None:intergenic | 45.0% | |
| TCTATGAGACCATAAGGTCC+AGG | + | chr7.3:3968614-3968633 | MS.gene072508:intron | 45.0% | |
| TCTCTCACACCATCACCATT+AGG | + | chr7.3:3968678-3968697 | MS.gene072508:intron | 45.0% | |
| TGAATTCAGGTCCTCCTAAG+AGG | + | chr7.3:3970100-3970119 | MS.gene072508:intron | 45.0% | |
| TGCTGTCAGTCCTTCTAACA+AGG | - | chr7.3:3969289-3969308 | None:intergenic | 45.0% | |
| ! | GGATTTAGGTTCGGTTCGTT+TGG | - | chr7.3:3967936-3967955 | None:intergenic | 45.0% |
| ! | TAGTTGTGATGGGATAGCCT+TGG | + | chr7.3:3969953-3969972 | MS.gene072508:intron | 45.0% |
| !! | CGGTAAAATTGGTGTCGTTG+TGG | + | chr7.3:3969516-3969535 | MS.gene072508:CDS | 45.0% |
| !! | TAAATAAATAAATACAAAAA+CGG | - | chr7.3:3968024-3968043 | None:intergenic | 5.0% |
| AAACACTTTGGTCGTGCTCC+TGG | + | chr7.3:3970148-3970167 | MS.gene072508:CDS | 50.0% | |
| AAGAGAAGGCCAGAGGAAAG+AGG | + | chr7.3:3970221-3970240 | MS.gene072508:intron | 50.0% | |
| AGGAAACAAGAGAAGGCCAG+AGG | + | chr7.3:3970214-3970233 | MS.gene072508:intron | 50.0% | |
| AGGCTCAGACAAGTGTGTGT+TGG | - | chr7.3:3968653-3968672 | None:intergenic | 50.0% | |
| AGGGGATCGATCTCAAAGCT+GGG | + | chr7.3:3967894-3967913 | MS.gene072508:intron | 50.0% | |
| CAAGCGCTTGTTCATGAGCA+AGG | + | chr7.3:3969328-3969347 | MS.gene072508:CDS | 50.0% | |
| CACACATTTGTCTGAGCCTC+TGG | + | chr7.3:3968168-3968187 | MS.gene072508:intron | 50.0% | |
| CATACCGTGTTCTGTCCAAG+GGG | - | chr7.3:3969682-3969701 | None:intergenic | 50.0% | |
| CATTCTTTGGGCCTCTTAGG+AGG | - | chr7.3:3970114-3970133 | None:intergenic | 50.0% | |
| CCCAGCTCTATGAGACCATA+AGG | + | chr7.3:3968608-3968627 | MS.gene072508:intron | 50.0% | |
| CGTGCAAGAATAGAGAAGGC+GGG | + | chr7.3:3969616-3969635 | MS.gene072508:CDS | 50.0% | |
| CTCATACCGTGTTCTGTCCA+AGG | - | chr7.3:3969684-3969703 | None:intergenic | 50.0% | |
| GATCGAGTACATGAAGGGGA+AGG | + | chr7.3:3969382-3969401 | MS.gene072508:CDS | 50.0% | |
| GGCACGTGCAAGAATAGAGA+AGG | + | chr7.3:3969612-3969631 | MS.gene072508:CDS | 50.0% | |
| TAAGGCTTGGAATGGCTGTG+TGG | - | chr7.3:3970178-3970197 | None:intergenic | 50.0% | |
| TCTATGAGGCCGTAAGGTCT+AGG | + | chr7.3:3968308-3968327 | MS.gene072508:intron | 50.0% | |
| TGATCCCAGCTCTATGAGAC+CGG | + | chr7.3:3968604-3968623 | MS.gene072508:intron | 50.0% | |
| TGCCCTTAGGTTCACAGAGA+CGG | + | chr7.3:3969591-3969610 | MS.gene072508:CDS | 50.0% | |
| TGCCGTCTCTGTGAACCTAA+GGG | - | chr7.3:3969596-3969615 | None:intergenic | 50.0% | |
| ! | TGATGGTGTGAGAGATGCAG+AGG | - | chr7.3:3968673-3968692 | None:intergenic | 50.0% |
| ACCTTACGGCCTCATAGAGC+TGG | - | chr7.3:3968306-3968325 | None:intergenic | 55.0% | |
| ACCTTCCGGTCTCATAGAGC+TGG | - | chr7.3:3968821-3968840 | None:intergenic | 55.0% | |
| AGCTCCCCTTGGACAGAACA+CGG | + | chr7.3:3969675-3969694 | MS.gene072508:CDS | 55.0% | |
| CAGGGGATCGATCTCAAAGC+TGG | + | chr7.3:3967893-3967912 | MS.gene072508:intron | 55.0% | |
| CCTTACGGCCTCATAGAGCT+GGG | - | chr7.3:3968125-3968144 | None:intergenic | 55.0% | |
| CCTTCCGGTCTCATAGAGCT+GGG | - | chr7.3:3968820-3968839 | None:intergenic | 55.0% | |
| CTACCTCAAGCTCCTCGTCA+AGG | + | chr7.3:3967964-3967983 | MS.gene072508:CDS | 55.0% | |
| GCAAGAATAGAGAAGGCGGG+TGG | + | chr7.3:3969619-3969638 | MS.gene072508:CDS | 55.0% | |
| GGGATCGATCTCAAAGCTGG+GGG | + | chr7.3:3967896-3967915 | MS.gene072508:CDS | 55.0% | |
| GGGGATCGATCTCAAAGCTG+GGG | + | chr7.3:3967895-3967914 | MS.gene072508:intron | 55.0% | |
| GTGCCGTCTCTGTGAACCTA+AGG | - | chr7.3:3969597-3969616 | None:intergenic | 55.0% | |
| TCTATGAGACCGGAAGGTCC+AGG | + | chr7.3:3968823-3968842 | MS.gene072508:intron | 55.0% | |
| TCTATGAGGCCGTAAGGCCA+AGG | + | chr7.3:3968128-3968147 | MS.gene072508:intron | 55.0% | |
| TCTGTCCAAGGGGAGCTCTA+AGG | - | chr7.3:3969672-3969691 | None:intergenic | 55.0% | |
| ! | CTGTCCAAGGGGAGCTCTAA+GGG | - | chr7.3:3969671-3969690 | None:intergenic | 55.0% |
| CCCAGCTCTATGAGACCGGA+AGG | + | chr7.3:3968817-3968836 | MS.gene072508:intron | 60.0% | |
| CCCAGCTCTATGAGGCCGTA+AGG | + | chr7.3:3968122-3968141 | MS.gene072508:intron | 60.0% | |
| CTTGCCCTTAGAGCTCCCCT+TGG | + | chr7.3:3969664-3969683 | MS.gene072508:CDS | 60.0% | |
| GAATGGCTGTGTGGCACACC+AGG | - | chr7.3:3970169-3970188 | None:intergenic | 60.0% | |
| GCCTTACGGCCTCATAGAGC+TGG | - | chr7.3:3968126-3968145 | None:intergenic | 60.0% | |
| GGACCTTGACGAGGAGCTTG+AGG | - | chr7.3:3967970-3967989 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 3967789 | 3970304 | 3967789 | ID=MS.gene072508 |
| chr7.3 | mRNA | 3967789 | 3970304 | 3967789 | ID=MS.gene072508.t1;Parent=MS.gene072508 |
| chr7.3 | exon | 3967789 | 3967791 | 3967789 | ID=MS.gene072508.t1.exon1;Parent=MS.gene072508.t1 |
| chr7.3 | CDS | 3967789 | 3967791 | 3967789 | ID=cds.MS.gene072508.t1;Parent=MS.gene072508.t1 |
| chr7.3 | exon | 3967896 | 3967985 | 3967896 | ID=MS.gene072508.t1.exon2;Parent=MS.gene072508.t1 |
| chr7.3 | CDS | 3967896 | 3967985 | 3967896 | ID=cds.MS.gene072508.t1;Parent=MS.gene072508.t1 |
| chr7.3 | exon | 3969275 | 3969403 | 3969275 | ID=MS.gene072508.t1.exon3;Parent=MS.gene072508.t1 |
| chr7.3 | CDS | 3969275 | 3969403 | 3969275 | ID=cds.MS.gene072508.t1;Parent=MS.gene072508.t1 |
| chr7.3 | exon | 3969514 | 3969696 | 3969514 | ID=MS.gene072508.t1.exon4;Parent=MS.gene072508.t1 |
| chr7.3 | CDS | 3969514 | 3969696 | 3969514 | ID=cds.MS.gene072508.t1;Parent=MS.gene072508.t1 |
| chr7.3 | exon | 3970109 | 3970198 | 3970109 | ID=MS.gene072508.t1.exon5;Parent=MS.gene072508.t1 |
| chr7.3 | CDS | 3970109 | 3970198 | 3970109 | ID=cds.MS.gene072508.t1;Parent=MS.gene072508.t1 |
| chr7.3 | exon | 3970299 | 3970304 | 3970299 | ID=MS.gene072508.t1.exon6;Parent=MS.gene072508.t1 |
| chr7.3 | CDS | 3970299 | 3970304 | 3970299 | ID=cds.MS.gene072508.t1;Parent=MS.gene072508.t1 |
| Gene Sequence |
| Protein sequence |
